Pregenerated sensors for CCN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037362Ensembl transcript IDs: ENSMUST00000050027.9
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGAGATGTATGTTTTCTTTGATCTTACACTTGGAAGCACAAGTTaGCCTACCCCAACAAGGAACTCAGTAGAGATCCCTCAAGTCAAC | + |
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Preference number: 1 (lower is better) Translates to: QEMYVFFDLTLGSTS*PTPTRNSVEIPQVN Trigger: GTTGACTTGAGGGATCTCTACTGAGTTCCTTGTTGGGGTAGGTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CCA 90 bp | CCCGTCATCTCTGCATTGGGAGTTTTTGGTTCAGCTTCTTTCTATTaGAAAGGAGTCGGTTTGTCTATAATGGAGAAAGTTCATGACACT | + |
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Preference number: 1 (lower is better) Translates to: PVISALGVFGSASFY*KGVGLSIMEKVHDT Trigger: AGTGTCATGAACTTTCTCCATTATAGACAAACCGACTCCTTTCCAATAGAAAGAAGCTGAACCAAAAACTCCCAATGCAGAGATGACGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR-3UTR TCA 90 bp | CTTCAGTGTACTTTAACTATGAAAGAGTCCCTGTTTAATTTTGAAGAAGTGGGCCCGGGGTACAAACCATaGGCTGAGAGGCCCCGTCAT | + |
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Preference number: 2 (lower is better) Translates to: LQCTLTMKESLFNFEEVGPGYKP*AERPRH Trigger: ATGACGGGGCCTCTCAGCTCATGGTTTGTACCCCGG...GCCCACTTCTTCAAAATTAAACAGGGACTCTTTCATAGTTAAAGTACACTGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR-3UTR TCA 90 bp | ATTCTAAGATTGCAAATTCAGGTATCAGTGTATAAGGATGTCTGGGGACCTTCTGTACAAACCATGAGCTaGGAGGCCCCGTCATCTCTG | + |
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Preference number: 2 (lower is better) Translates to: ILRLQIQVSVYKDVWGPSVQTMS*EAPSSL Trigger: CAGAGATGACGGGGCCTCTCAGCTCATGGTTTGTAC...AGAAGGTCCCCAGACATCCTTATACACTGATACCTGAATTTGCAATCTTAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR-3UTR GCA 90 bp | CTTCAGTGTACTTTAACTATGAAAGAGTCCCTGTTTAATTTTGAAGAAGTGGGCGCCGCAGCAACCATTTaGCTCAACCAATATGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: LQCTLTMKESLFNFEEVGAAATI*LNQYAS Trigger: GGAAGCATATTGGTTGAGGCAAATGGTTGCTGCGGC...GCCCACTTCTTCAAAATTAAACAGGGACTCTTTCATAGTTAAAGTACACTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR-3UTR GCA 90 bp | CTTCAGTGTACTTTAACTATGAAAGAGTCCCTGTTTAATTTTGAAGAAGTGGGCAGGCCCCGTCATCTCTaGATTGGGAGTTTTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: LQCTLTMKESLFNFEEVGRPRHL*IGSFWF Trigger: GAACCAAAAACTCCCAATGCAGAGATGACGGGGCCT...GCCCACTTCTTCAAAATTAAACAGGGACTCTTTCATAGTTAAAGTACACTGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR-3UTR TCA 90 bp | ATTCTAAGATTGCAAATTCAGGTATCAGTGTATAAGGATGTCTGGGGACCTTCTATAAATGGCCTCATATaGTCACAGCAACATACGTGG | + |
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Preference number: 2 (lower is better) Translates to: ILRLQIQVSVYKDVWGPSINGLI*SQQHTW Trigger: CCACGTATGTTGCTGTGATCATATGAGGCCATTTAT...AGAAGGTCCCCAGACATCCTTATACACTGATACCTGAATTTGCAATCTTAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CCA 72 bp | ACGTGGGACAACTTCATTATGTTTCCTATATACAGATaGTGGGCCATGCCGCAGCAACCATTTGCCTCAACC | + |
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Preference number: 3 (lower is better) Translates to: TWDNFIMFPIYR*WAMPQQPFAST Trigger: GGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACATAATGAAGTTGTCCCACGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CCA 72 bp | TGGGACAACTTCATTATGTTTCCTATATACAGATGGTaGGCCATGCCGCAGCAACCATTTGCCTCAACCAAT | + |
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Preference number: 3 (lower is better) Translates to: WDNFIMFPIYRW*AMPQQPFASTN Trigger: ATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACATAATGAAGTTGTCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CCA 72 bp | AAAGTGACTAGGGCTGAAGACGATGGTCCAAGTAAATaGCAGAGAATGTTTGCTCTTTTGGTGATAGAGATA | + |
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Preference number: 3 (lower is better) Translates to: KVTRAEDDGPSK*QRMFALLVIEI Trigger: TATCTCTATCACCAAAAGAGCAAACATTCTCTGCCATTTACTTGGACCATCGTCTTCAGCCCTAGTCACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR-3UTR CAA 90 bp | ATGTTCAAGAGATGTATGTTTTCTTTGATCTTACACTTGGAAGCACAAGTTGACTATCCTGAGCTTACCTaGATTCTAAGTTTACATTCG | + |
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Preference number: 3 (lower is better) Translates to: MFKRCMFSLILHLEAQVDYPELT*ILSLHS Trigger: CGAATGTAAACTTAGAATCAAGGTAAGCTCAGGATA...GTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTGAACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | AGCAGCCTCCGGGGTACAAACCATGAGCTGAGAGGCCCCGTCATCTCTGCATTGCAATCTGCCCATCTCTaGAGGTGCAGAAGTACTGAC | + |
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Preference number: 4 (lower is better) Translates to: SSLRGTNHELRGPVISALQSAHL*RCRSTD Trigger: GTCAGTACTTCTGCACCTGCAGAGATGGGCAGATTG...CAATGCAGAGATGACGGGGCCTCTCAGCTCATGGTTTGTACCCCGGAGGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTACTGGGGCACTTGGGTaGGCACCGAGAAGGGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: IYRWWAMPQQPFASTNMLTGALG*APRRAA Trigger: CGCTGCCCTTCTCGGTGCCCACCCAAGTGCCCCAGT...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTAGCAGCGGCCATCACTaGAGACCCCACAGAACCGGG | + |
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Preference number: 4 (lower is better) Translates to: IYRWWAMPQQPFASTNMLSSGHH*RPHRTG Trigger: CCCGGTTCTGTGGGGTCTGCAGTGATGGCCGCTGCT...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR TCA 90 bp | TGTTTCCTATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCATCCCCCGGGAGACACTaGAACTCCACCTGGATGGTT | + |
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Preference number: 4 (lower is better) Translates to: CFLYTDGGPCRSNHLPQPSPGRH*NSTWMV Trigger: AACCATCCAGGTGGAGTTTCAGTGTCTCCCGGGGGA...TGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTTGCCAGTCTGGTTGTTaGGGTCTGCGCTGCGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: IYRWWAMPQQPFASTNMLCQSGC*GLRCGH Trigger: GTGACCGCAGCGCAGACCCCAACAACCAGACTGGCA...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | AGCAGCCTCCGGGGTACAAACCATGAGCTGAGAGGCCCCGTCATCTCTGCATTGCTTTCAGGGATTTCTTaGTGCGGAGACACTTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: SSLRGTNHELRGPVISALLSGIS*CGDTFY Trigger: GTAAAAAGTGTCTCCGCACCAAGAAATCCCTGAAAG...CAATGCAGAGATGACGGGGCCTCTCAGCTCATGGTTTGTACCCCGGAGGCTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | GTTTCCTATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAAATGGTTTTGGTGTTGTaGGGGGTACAGCAGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: VSYIQMVGHAAATICLNQMVLVL*GVQQRP Trigger: TGGCCGCTGCTGTACCCCCCACAACACCAAAACCAT...TTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | AGCAGCCTCCGGGGTACAAACCATGAGCTGAGAGGCCCCGTCATCTCTGCATTGTCCAATGACCATGACTaGTTTCTTGATGATTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SSLRGTNHELRGPVISALSNDHD*FLDDFP Trigger: GGGGAAATCATCAAGAAACCAGTCATGGTCATTGGA...CAATGCAGAGATGACGGGGCCTCTCAGCTCATGGTTTGTACCCCGGAGGCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | TGTTTCCTATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAGCCCATCTCTGCAGGTaGAGAAGTACTGACAGTTCG | + |
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Preference number: 4 (lower is better) Translates to: CFLYTDGGPCRSNHLPQPAHLCR*RSTDSS Trigger: CGAACTGTCAGTACTTCTGCACCTGCAGAGATGGGC...TGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR TCA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTCTCCGTTGCGGTAAATaGCCCCATCGAACACACAGT | + |
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Preference number: 4 (lower is better) Translates to: IYRWWAMPQQPFASTNMLLRCGK*PHRTHS Trigger: ACTGTGTGTTCGATGGGGTCATTTACCGCAACGGAG...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | TGTTTCCTATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAACAGTTGTCTCCCTCTaGAACCATGCAAATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: CFLYTDGGPCRSNHLPQPTVVSL*NHANAS Trigger: ACTGGCATTTGCATGGTTCCAGAGGGAGACAACTGT...TGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CCA 90 bp | TGTTTCCTATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCACGAACTGTAGGTGGATaGCTTTCAGGGATTTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: CFLYTDGGPCRSNHLPQPRTVGG*LSGISW Trigger: CCAAGAAATCCCTGAAAGCCATCCACCTACAGTTCG...TGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | ACAGGAAAGGAAGTCACCTTTAAGCCATATCCTGAGCTTACCTTGATTCTAAGTTGTTGGGGTCTGCGCTaGGGTCACAGTAGAGACCAC | + |
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Preference number: 4 (lower is better) Translates to: TGKEVTFKPYPELTLILSCWGLR*GHSRDH Trigger: GTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACA...ACTTAGAATCAAGGTAAGCTCAGGATATGGCTTAAAGGTGACTTCCTTTCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | ACAGGAAAGGAAGTCACCTTTAAGCCATATCCTGAGCTTACCTTGATTCTAAGTCTGGTTGTTGGGGTCTaGGCTGCGGTCACAGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: TGKEVTFKPYPELTLILSLVVGV*AAVTVE Trigger: CTCTACTGTGACCGCAGCGCAGACCCCAACAACCAG...ACTTAGAATCAAGGTAAGCTCAGGATATGGCTTAAAGGTGACTTCCTTTCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CAA 72 bp | ACAAACCATGAGCTGAGAGGCCCCGTCATCTCTGCATaGGGAGTTTTTGGTTCAGCTTCTTTCTATTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TNHELRGPVISA*GVFGSASFYWK Trigger: TTTCCAATAGAAAGAAGCTGAACCAAAAACTCCCAATGCAGAGATGACGGGGCCTCTCAGCTCATGGTTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | ACAGGAAAGGAAGTCACCTTTAAGCCATATCCTGAGCTTACCTTGATTCTAAGTCACAAGGCCGAACGATaGAGAGACGAGTCTGTTTTA | + |
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Preference number: 4 (lower is better) Translates to: TGKEVTFKPYPELTLILSHKAER*RDESVL Trigger: TAAAACAGACTCGTCTCTGCATCGTTCGGCCTTGTG...ACTTAGAATCAAGGTAAGCTCAGGATATGGCTTAAAGGTGACTTCCTTTCCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | ATGTTCAAGAGATGTATGTTTTCTTTGATCTTACACTTGGAAGCACAAGTTGACCTGGAACCATGCAAATaGCAGTCTGGTTGTTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: MFKRCMFSLILHLEAQVDLEPCK*QSGCWG Trigger: ACCCCAACAACCAGACTGGCATTTGCATGGTTCCAG...GTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTGAACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR TCA 90 bp | CTTCAGTGTACTTTAACTATGAAAGAGTCCCTGTTTAATTTTGAAGAAGTGGGCAGAGATGCAGAGACTTaGCTTAAGAGATGGAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LQCTLTMKESLFNFEEVGRDAET*LKRWKS Trigger: GCTCTTCCATCTCTTAAGTCAAGTCTCTGCATCTCT...GCCCACTTCTTCAAAATTAAACAGGGACTCTTTCATAGTTAAAGTACACTGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR GCA 90 bp | CTTCAGTGTACTTTAACTATGAAAGAGTCCCTGTTTAATTTTGAAGAAGTGGGCTCAGGGATTTCTTGGTaGGGAGACACTTTTTACCTT | + |
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Preference number: 4 (lower is better) Translates to: LQCTLTMKESLFNFEEVGSGISW*GDTFYL Trigger: AAGGTAAAAAGTGTCTCCGCACCAAGAAATCCCTGA...GCCCACTTCTTCAAAATTAAACAGGGACTCTTTCATAGTTAAAGTACACTGAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CAA 72 bp | ATGTTCAAGAGATGTATGTTTTCTTTGATCTTACACTaGGAAGCACAAGTTGACCTACCCCAACAAGGAACT | + |
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Preference number: 4 (lower is better) Translates to: MFKRCMFSLILH*EAQVDLPQQGT Trigger: AGTTCCTTGTTGGGGTAGGTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTGAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| 3UTR CAA 72 bp | TCTCTGAACTTCATGTTCAAGAGATGTATGTTTTCTTaGATCTTACACTTGGAAGCACAAGTTGACCTACCC | + |
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Preference number: 4 (lower is better) Translates to: SLNFMFKRCMFS*ILHLEAQVDLP Trigger: GGGTAGGTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTGAACATGAAGTTCAGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 90 bp | CAGTCTGGTTGTTGGGGTCTGCGCTGCGGTCACAGTAGAGACCACTaGTCTGGTCACAGGGTCTCATCTCAGAACAACTCTCCCCGCGCT | + |
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Preference number: 5 (lower is better) Translates to: QSGCWGLRCGHSRDH*SGHRVSSQNNSPRA Trigger: AGCGCGGGGAGAGTTGTTCTGAGATGAGACCCTGTGACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 90 bp | GTCTCCCTCTGGAACCATGCAAATGCCAGTCTGGTTGTTGGGGTCTaGGCTGCGGTCACAGTAGAGACCACTGCTCTGGTCACAGGGTCT | + |
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Preference number: 5 (lower is better) Translates to: VSLWNHANASLVVGV*AAVTVETTALVTGS Trigger: AGACCCTGTGACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTGGCATTTGCATGGTTCCAGAGGGAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 90 bp | CTAGCTGGCAGCGGGGCAGACAGCCAATCTGCCCATCTCTGCAGGTaGAGAAGTACTGACAGTTCGGCTCAAACTTCTCTCCGTTGCGGT | + |
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Preference number: 5 (lower is better) Translates to: LAGSGADSQSAHLCR*RSTDSSAQTSLRCG Trigger: ACCGCAACGGAGAGAAGTTTGAGCCGAACTGTCAGTACTTCTGCACCTGCAGAGATGGGCAGATTGGCTGTCTGCCCCGCTGCCAGCTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 90 bp | CCTCTGGAACCATGCAAATGCCAGTCTGGTTGTTGGGGTCTGCGCTaGGGTCACAGTAGAGACCACTGCTCTGGTCACAGGGTCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: PLEPCKCQSGCWGLR*GHSRDHCSGHRVSS Trigger: AGATGAGACCCTGTGACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTGGCATTTGCATGGTTCCAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 90 bp | CACAGTTGTCTCCCTCTGGAACCATGCAAATGCCAGTCTGGTTGTTaGGGTCTGCGCTGCGGTCACAGTAGAGACCACTGCTCTGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: HSCLPLEPCKCQSGC*GLRCGHSRDHCSGH Trigger: GTGACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTGGCATTTGCATGGTTCCAGAGGGAGACAACTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS TCA 90 bp | AGAGACGAGTCTGTTTTACCATCTCACACTGGCGATTCCTGTTGGTaGCCCGGGTGGACACGCCCATTCCACAGCTCTTGGAACATGCGC | + |
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Preference number: 5 (lower is better) Translates to: RDESVLPSHTGDSCW*PGWTRPFHSSWNMR Trigger: GCGCATGTTCCAAGAGCTGTGGAATGGGCGTGTCCACCCGGGTCACCAACAGGAATCGCCAGTGTGAGATGGTAAAACAGACTCGTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTCACTGGCGATTCCTGTaGGTGACCCGGGTGGACACG | + |
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Preference number: 5 (lower is better) Translates to: IYRWWAMPQQPFASTNMLHWRFL*VTRVDT Trigger: CGTGTCCACCCGGGTCACCAACAGGAATCGCCAGTG...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 90 bp | CTGAGGGCAGTTGGAGTAGCAGGTACAGGTTCCAATGACCATGACTaGTTTCTTGATGATTTCCCCCGGGAGACACTGAAACTCCACCTG | + |
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Preference number: 5 (lower is better) Translates to: LRAVGVAGTGSNDHD*FLDDFPRETLKLHL Trigger: CAGGTGGAGTTTCAGTGTCTCCCGGGGGAAATCATCAAGAAACCAGTCATGGTCATTGGAACCTGTACCTGCTACTCCAACTGCCCTCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 90 bp | TCTTGTCTGTTACTTCCTCGGGCTCTTGTTCACAAGGCCGAACGATaGAGAGACGAGTCTGTTTTACCATCTCACACTGGCGATTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: SCLLLPRALVHKAER*RDESVLPSHTGDSC Trigger: ACAGGAATCGCCAGTGTGAGATGGTAAAACAGACTCGTCTCTGCATCGTTCGGCCTTGTGAACAAGAGCCCGAGGAAGTAACAGACAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS TCA 90 bp | AGAAGTACTGACAGTTCGGCTCAAACTTCTCTCCGTTGCGGTAAATaGCCCCATCGAACACACAGTTGTCTCCCTCTGGAACCATGCAAA | + |
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Preference number: 5 (lower is better) Translates to: RSTDSSAQTSLRCGK*PHRTHSCLPLEPCK Trigger: TTTGCATGGTTCCAGAGGGAGACAACTGTGTGTTCGATGGGGTCATTTACCGCAACGGAGAGAAGTTTGAGCCGAACTGTCAGTACTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTCTTCAGCTCCAGATCTaGGAGGAAGGCCTCATTGTT | + |
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Preference number: 5 (lower is better) Translates to: IYRWWAMPQQPFASTNMLLQLQI*EEGLIV Trigger: AACAATGAGGCCTTCCTCCAAGATCTGGAGCTGAAG...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATTCTAAGATTGCAAATTCAGGTATCAGTGTATAAGGATGTCTGGGGACCTTCTCAAATGCCAGTCTGGTaGTTGGGGTCTGCGCTGCGG | + |
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Preference number: 5 (lower is better) Translates to: ILRLQIQVSVYKDVWGPSQMPVW*LGSALR Trigger: CCGCAGCGCAGACCCCAACAACCAGACTGGCATTTG...AGAAGGTCCCCAGACATCCTTATACACTGATACCTGAATTTGCAATCTTAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | TGTTTCCTATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAGCTTTCAGGGATTTCTaGGTGCGGAGACACTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: CFLYTDGGPCRSNHLPQPAFRDF*VRRHFL Trigger: TAAAAAGTGTCTCCGCACCAAGAAATCCCTGAAAGC...TGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATATAGGAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATATACAGATGGTGGGCCATGCCGCAGCAACCATTTGCCTCAACCAATATGCTTCACTTTTTACCTTTCTaGTCTGTTACTTCCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: IYRWWAMPQQPFASTNMLHFLPF*SVTSSG Trigger: GCCCGAGGAAGTAACAGACAAGAAAGGTAAAAAGTG...AAGCATATTGGTTGAGGCAAATGGTTGCTGCGGCATGGCCCACCATCTGTATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATGTTCAAGAGATGTATGTTTTCTTTGATCTTACACTTGGAAGCACAAGTTGACATGCCAGTCTGGTTGTaGGGGTCTGCGCTGCGGTCA | + |
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Preference number: 5 (lower is better) Translates to: MFKRCMFSLILHLEAQVDMPVWL*GSALRS Trigger: TGACCGCAGCGCAGACCCCAACAACCAGACTGGCAT...GTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTGAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATTCTAAGATTGCAAATTCAGGTATCAGTGTATAAGGATGTCTGGGGACCTTCTCCATCGAACACACAGTaGTCTCCCTCTGGAACCATG | + |
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Preference number: 5 (lower is better) Translates to: ILRLQIQVSVYKDVWGPSPSNTQ*SPSGTM Trigger: CATGGTTCCAGAGGGAGACAACTGTGTGTTCGATGG...AGAAGGTCCCCAGACATCCTTATACACTGATACCTGAATTTGCAATCTTAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATGTTCAAGAGATGTATGTTTTCTTTGATCTTACACTTGGAAGCACAAGTTGACCCCATTCCACAGCTCTaGGAACATGCGCTCCACTCC | + |
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Preference number: 5 (lower is better) Translates to: MFKRCMFSLILHLEAQVDPIPQL*EHALHS Trigger: GGAGTGGAGCGCATGTTCCAAGAGCTGTGGAATGGG...GTCAACTTGTGCTTCCAAGTGTAAGATCAAAGAAAACATACATCTCTTGAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS-3UTR CAA 90 bp | ATTCTAAGATTGCAAATTCAGGTATCAGTGTATAAGGATGTCTGGGGACCTTCTAAATTTCTCCTCTGCTaGTCTTCAGCTCCAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: ILRLQIQVSVYKDVWGPSKFLLC*SSAPDL Trigger: AAGATCTGGAGCTGAAGACAAGCAGAGGAGAAATTT...AGAAGGTCCCCAGACATCCTTATACACTGATACCTGAATTTGCAATCTTAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 72 bp | TCACAGGGTCTCATCTCAGAACAACTCTCCCCGCGCTaGCGGGCGCACACCGGACAGCAGGAGCAGCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: SQGLISEQLSPR*RAHTGQQEQPS Trigger: GGACGGCTGCTCCTGCTGTCCGGTGTGCGCCCGCCAGCGCGGGGAGAGTTGTTCTGAGATGAGACCCTGTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 72 bp | GCTGGGCAGTCAGGACCCGGCAGTAGCACGTCTAGCTaGCAGCGGGGCAGACAGCCAATCTGCCCATCTCTG | + |
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Preference number: 6 (lower is better) Translates to: AGQSGPGSSTSS*QRGRQPICPSL Trigger: CAGAGATGGGCAGATTGGCTGTCTGCCCCGCTGCCAGCTAGACGTGCTACTGCCGGGTCCTGACTGCCCAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 72 bp | GACTTCAACTCCTACGGTGGCTTCCGGTCTATAGGCTaGAAGGGCCAAGCCTCCCAGCGTCCCCTGCGTCCC | + |
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Preference number: 6 (lower is better) Translates to: DFNSYGGFRSIG*KGQASQRPLRP Trigger: GGGACGCAGGGGACGCTGGGAGGCTTGGCCCTTCCAGCCTATAGACCGGAAGCCACCGTAGGAGTTGAAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 72 bp | CCATGCAAATGCCAGTCTGGTTGTTGGGGTCTGCGCTaGGGTCACAGTAGAGACCACTGCTCTGGTCACAGG | + |
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Preference number: 6 (lower is better) Translates to: PCKCQSGCWGLR*GHSRDHCSGHR Trigger: CCTGTGACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTGGCATTTGCATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 72 bp | CTCCCTCTGGAACCATGCAAATGCCAGTCTGGTTGTTaGGGTCTGCGCTGCGGTCACAGTAGAGACCACTGC | + |
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Preference number: 6 (lower is better) Translates to: LPLEPCKCQSGC*GLRCGHSRDHC Trigger: GCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTGGCATTTGCATGGTTCCAGAGGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS TCA 72 bp | GGGCACCGAGAAGGGCAGCGCAGAGATGCAGAGACTTaGCTTAAGAGATGGAAGAGCAGGAAGCCTAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GHREGQRRDAET*LKRWKSRKPRQ Trigger: CTGCCTAGGCTTCCTGCTCTTCCATCTCTTAAGTCAAGTCTCTGCATCTCTGCGCTGCCCTTCTCGGTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 72 bp | TGGAACCATGCAAATGCCAGTCTGGTTGTTGGGGTCTaGGCTGCGGTCACAGTAGAGACCACTGCTCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: WNHANASLVVGV*AAVTVETTALV Trigger: GACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACAACCAGACTGGCATTTGCATGGTTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 72 bp | CCGGGTGGACACGCCCATTCCACAGCTCTTGGAACATaGGCTCCACTCCGTCGTCTGCTCAATGCAGTTAAT | + |
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Preference number: 6 (lower is better) Translates to: PGGHAHSTALGT*APLRRLLNAVN Trigger: ATTAACTGCATTGAGCAGACGACGGAGTGGAGCGCATGTTCCAAGAGCTGTGGAATGGGCGTGTCCACCCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 72 bp | ACGATGCAGAGACGAGTCTGTTTTACCATCTCACACTaGCGATTCCTGTTGGTGACCCGGGTGGACACGCCC | + |
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Preference number: 6 (lower is better) Translates to: TMQRRVCFTISH*RFLLVTRVDTP Trigger: GGGCGTGTCCACCCGGGTCACCAACAGGAATCGCCAGTGTGAGATGGTAAAACAGACTCGTCTCTGCATCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS TCA 72 bp | TCTGTTTTACCATCTCACACTGGCGATTCCTGTTGGTaGCCCGGGTGGACACGCCCATTCCACAGCTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SVLPSHTGDSCW*PGWTRPFHSSW Trigger: CCAAGAGCTGTGGAATGGGCGTGTCCACCCGGGTCACCAACAGGAATCGCCAGTGTGAGATGGTAAAACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 72 bp | TGTTGGGGTCTGCGCTGCGGTCACAGTAGAGACCACTaGTCTGGTCACAGGGTCTCATCTCAGAACAACTCT | + |
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Preference number: 6 (lower is better) Translates to: CWGLRCGHSRDH*SGHRVSSQNNS Trigger: AGAGTTGTTCTGAGATGAGACCCTGTGACCAGAGCAGTGGTCTCTACTGTGACCGCAGCGCAGACCCCAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 72 bp | AGCGGGGCAGACAGCCAATCTGCCCATCTCTGCAGGTaGAGAAGTACTGACAGTTCGGCTCAAACTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SGADSQSAHLCR*RSTDSSAQTSL Trigger: GAGAGAAGTTTGAGCCGAACTGTCAGTACTTCTGCACCTGCAGAGATGGGCAGATTGGCTGTCTGCCCCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS TCA 72 bp | GACAGTTCGGCTCAAACTTCTCTCCGTTGCGGTAAATaGCCCCATCGAACACACAGTTGTCTCCCTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: DSSAQTSLRCGK*PHRTHSCLPLE Trigger: TTCCAGAGGGAGACAACTGTGTGTTCGATGGGGTCATTTACCGCAACGGAGAGAAGTTTGAGCCGAACTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS TCA 72 bp | ATGACTGGTTTCTTGATGATTTCCCCCGGGAGACACTaGAACTCCACCTGGATGGTTTTGGTGTTGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: MTGFLMISPGRH*NSTWMVLVLWG Trigger: CCCCCACAACACCAAAACCATCCAGGTGGAGTTTCAGTGTCTCCCGGGGGAAATCATCAAGAAACCAGTCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS GCA 72 bp | TTACTTCCTCGGGCTCTTGTTCACAAGGCCGAACGATaGAGAGACGAGTCTGTTTTACCATCTCACACTGGC | + |
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Preference number: 6 (lower is better) Translates to: LLPRALVHKAER*RDESVLPSHTG Trigger: GCCAGTGTGAGATGGTAAAACAGACTCGTCTCTGCATCGTTCGGCCTTGTGAACAAGAGCCCGAGGAAGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CAA 72 bp | AGGGATTTCTTGGTGCGGAGACACTTTTTACCTTTCTaGTCTGTTACTTCCTCGGGCTCTTGTTCACAAGGC | + |
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Preference number: 6 (lower is better) Translates to: RDFLVRRHFLPF*SVTSSGSCSQG Trigger: GCCTTGTGAACAAGAGCCCGAGGAAGTAACAGACAAGAAAGGTAAAAAGTGTCTCCGCACCAAGAAATCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CCA 72 bp | TCTCGAACTGTAGGTGGATGGCTTTCAGGGATTTCTTaGTGCGGAGACACTTTTTACCTTTCTTGTCTGTTA | + |
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Preference number: 6 (lower is better) Translates to: SRTVGGWLSGIS*CGDTFYLSCLL Trigger: TAACAGACAAGAAAGGTAAAAAGTGTCTCCGCACCAAGAAATCCCTGAAAGCCATCCACCTACAGTTCGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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| CDS CAA 72 bp | TTCTCGAACTGTAGGTGGATGGCTTTCAGGGATTTCTaGGTGCGGAGACACTTTTTACCTTTCTTGTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: FSNCRWMAFRDF*VRRHFLPFLSV Trigger: AACAGACAAGAAAGGTAAAAAGTGTCTCCGCACCAAGAAATCCCTGAAAGCCATCCACCTACAGTTCGAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050027.9 |
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