Pregenerated sensors for CCN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019997Ensembl transcript IDs: ENSMUST00000020171.12, ENSMUST00000129142.2, ENSMUST00000176228.2
Found 149 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATATTCTTTTTCATGATCTCGCCATCGGGGCATTTGAACTCCACTaGCAGAGTGGTGGTTCTGTGCGGTGTGCAGCAGCGGCCGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: HILFHDLAIGAFELH*QSGGSVRCAAAAVC Trigger: ACAGACGGCCGCTGCTGCACACCGCACAGAACCACCACTCTGCCAGTGGAGTTCAAATGCCCCGATGGCGAGATCATGAAAAAGAATATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR TCA 90 bp | TACTTGCCACAAGCTGTCCAGTCTAACAGACAAGGCTCTGACTCCTaGCAAGTGTCACTGGAATCAGAATGGTCAGAGCTGAAACTGCTG | + |
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Preference number: 1 (lower is better) Translates to: YLPQAVQSNRQGSDS*QVSLESEWSELKLL Trigger: CAGCAGTTTCAGCTCTGACCATTCTGATTCCAGTGACACTTGTCAGGAGTCAGAGCCTTGTCTGTTAGACTGGACAGCTTGTGGCAAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR TCA 90 bp | TCAAAGAAGCAGCAAGCACTTCCTGGTAGGAATCGGACCTTACCCTaGGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGG | + |
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Preference number: 1 (lower is better) Translates to: SKKQQALPGRNRTLP*ASHFLIKAICSPTG Trigger: CCCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTCCTACCAGGAAGTGCTTGCTGCTTCTTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR CCA 90 bp | GCTGCTTTTAAAATAACCTCAGCTAGTACCTGTCTTTCTTTCTCCTaGCATCTCCACTGTTCCAGGAGACTCACCTCAGTGTGCATTCTG | + |
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Preference number: 1 (lower is better) Translates to: AAFKITSASTCLSFS*HLHCSRRLTSVCIL Trigger: CAGAATGCACACTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTACTAGCTGAGGTTATTTTAAAAGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR TCA 90 bp | TCTGACTTCCAATACATAGCTTTATCACCTGCACAGCATTTGTTCTaGCAGAGAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCT | + |
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Preference number: 1 (lower is better) Translates to: SDFQYIALSPAQHLF*QRVTQVTIPTAVSP Trigger: AGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAGGTGATAAAGCTATGTATTGGAAGTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR TCA 90 bp | AGAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTaGATCACAGATAAGCTTCGTGTCCTACCTATGGTGTTTGGAGTT | + |
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Preference number: 1 (lower is better) Translates to: RVTQVTIPTAVSPLF*ITDKLRVLPMVFGV Trigger: AACTCCAAACACCATAGGTAGGACACGAAGCTTATCTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR CAA 90 bp | TTAGCCCTGTATGTCTTCACACTGGTGCAGCCAGAAAGCTCAAACTaGACAGGCTTGGCGATTTTAGGTGTCCGGATGCACTTTTTGCCC | + |
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Preference number: 2 (lower is better) Translates to: LALYVFTLVQPESSN*TGLAILGVRMHFLP Trigger: GGGCAAAAAGTGCATCCGGACACCTAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATACAGGGCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAAAGAGTGGTGGTTCTGTaGGGTGTGCAGCAGCGGCCG | + |
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Preference number: 2 (lower is better) Translates to: FVSYLWCLEFEAISLKSQRVVVL*GVQQRP Trigger: CGGCCGCTGCTGCACACCGCACAGAACCACCACTCT...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | ATGAGTTCGTGTCCCTTACTTCCTGGCTTTACGCCATGTCTCCGTACATCTTCCGCATTTGAACTCCACTaGCAGAGTGGTGGTTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: MSSCPLLPGFTPCLRTSSAFELH*QSGGSV Trigger: CACAGAACCACCACTCTGCCAGTGGAGTTCAAATGC...GGAAGATGTACGGAGACATGGCGTAAAGCCAGGAAGTAAGGGACACGAACTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR TCA 90 bp | GTACCTGTCTTTCTTTCTCCTGGCATCTCCACTGTTCCAGGAGACTCACCTCAGCTTGTGTTTATATTCTaGGGGGAGAGACTGGGAGTT | + |
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Preference number: 2 (lower is better) Translates to: VPVFLSPGISTVPGDSPQLVFIF*GERLGV Trigger: AACTCCCAGTCTCTCCCCTCAGAATATAAACACAAG...CTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCTGTCTTTCTTTCTCCTaGCATCTCCACTGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: VLKEQLDSASSSGGHMLSCLSFS*HLHCSR Trigger: CCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACA...GCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | GTATGTCTTCACACTGGTGCAGCCAGAAAGCTCAAACTTGACAGGCTTGGCGATTCTGAGGGGAGAGACTaGGAGTTTCATTTGCCAGTT | + |
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Preference number: 2 (lower is better) Translates to: VCLHTGAARKLKLDRLGDSEGRD*EFHLPV Trigger: AACTGGCAAATGAAACTCCCAGTCTCTCCCCTCAGA...ATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTTCGTGTCCCTTACTTCCTGGCTTTACGCCATGTCTCCGTACATCTTCCTGTGTATGTCTTCACACTaGTGCAGCCAGAAAGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: EFVSLTSWLYAMSPYIFLCMSSH*CSQKAQ Trigger: TTGAGCTTTCTGGCTGCACCAGTGTGAAGACATACA...CAGGAAGATGTACGGAGACATGGCGTAAAGCCAGGAAGTAAGGGACACGAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR TCA 90 bp | CCCCCACCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGATCATATTCTTTTTCATaGTCTCGCCATCGGGGCATT | + |
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Preference number: 2 (lower is better) Translates to: PPPQTSHNQRSSKHFLVGSYSFS*SRHRGI Trigger: AATGCCCCGATGGCGAGATCATGAAAAAGAATATGA...TCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGGTGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGCTGAAACTGCTGTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAGTCTGTCTGCAAGCATaGTATAATTTCCCTCCCCGG | + |
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Preference number: 2 (lower is better) Translates to: RAETAVLKEQLDSASSSGVCLQA*YNFPPR Trigger: CCGGGGAGGGAAATTATAGCATGCTTGCAGACAGAC...TCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAACAGCAGTTTCAGCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | AAGCTGTCCAGTCTAACAGACAAGGCTCTGACTCCTGACAAGTGTCACTGGAATTGCATTCTGGCACTGTaGGCTAATGAACAACTGTCA | + |
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Preference number: 2 (lower is better) Translates to: KLSSLTDKALTPDKCHWNCILAL*ANEQLS Trigger: TGACAGTTGTTCATTAGCGCACAGTGCCAGAATGCA...ATTCCAGTGACACTTGTCAGGAGTCAGAGCCTTGTCTGTTAGACTGGACAGCTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTGGCACTGTGCGCTAATGAACAACTGTCAAGTGTAAACTGTCTCGAAACCGTCTGTCTGCAAGCATaGTATAATTTCCCTCCCCGG | + |
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Preference number: 2 (lower is better) Translates to: ILALCANEQLSSVNCLETVCLQA*YNFPPR Trigger: CCGGGGAGGGAAATTATAGCATGCTTGCAGACAGAC...GGTTTCGAGACAGTTTACACTTGACAGTTGTTCATTAGCGCACAGTGCCAGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTGTAAACTGTCTCGAAACCAGTGTCTGAGGTTGACAGACTACTTGTATGGCACGTTCTCACTTTGGTaGGATAGTTCCTCCCACGGT | + |
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Preference number: 2 (lower is better) Translates to: KCKLSRNQCLRLTDYLYGTFSLW*DSSSHG Trigger: ACCGTGGGAGGAACTATCCCACCAAAGTGAGAACGT...GCCATACAAGTAGTCTGTCAACCTCAGACACTGGTTTCGAGACAGTTTACACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCTGGCACTGTGCGCTAATGAACAACTGTCAAGTGTAAACTGTCTCGAAACCTGTCTTTCTTTCTCCTaGCATCTCCACTGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: ILALCANEQLSSVNCLETCLSFS*HLHCSR Trigger: CCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACA...GGTTTCGAGACAGTTTACACTTGACAGTTGTTCATTAGCGCACAGTGCCAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCTGGCACTGTGCGCTAATGAACAACTGTCAAGTGTAAACTGTCTCGAAACCCCTGACAAGTGTCACTaGAATCAGAATGGTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: ILALCANEQLSSVNCLETPDKCH*NQNGQS Trigger: GCTCTGACCATTCTGATTCCAGTGACACTTGTCAGG...GGTTTCGAGACAGTTTACACTTGACAGTTGTTCATTAGCGCACAGTGCCAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCTGTCCAGTCTAACAGACAAGGCTCTGACTCCTGACAAGTGTCACTGGAATCCTACCTATGGTGTTTaGAGTTTGAGGCTATCAGTT | + |
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Preference number: 2 (lower is better) Translates to: KLSSLTDKALTPDKCHWNPTYGV*SLRLSV Trigger: AACTGATAGCCTCAAACTCCAAACACCATAGGTAGG...ATTCCAGTGACACTTGTCAGGAGTCAGAGCCTTGTCTGTTAGACTGGACAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR CAA 90 bp | AAGTGTAAACTGTCTCGAAACCAGTGTCTGAGGTTGACAGACTACTaGTATGGCCATGACATAACGTTCTCACTTTGGTGGGATAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: KCKLSRNQCLRLTDY*YGHDITFSLWWDSS Trigger: GGAACTATCCCACCAAAGTGAGAACGTTATGTCATGGCCATACAAGTAGTCTGTCAACCTCAGACACTGGTTTCGAGACAGTTTACACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTGAAACTGCTGTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGATCACCAACAGGGATTTaGCCACATTTCCTACTAGAA | + |
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Preference number: 2 (lower is better) Translates to: RAETAVLKEQLDSASSSGSPTGI*PHFLLE Trigger: TTCTAGTAGGAAATGTGGTCAAATCCCTGTTGGTGA...TCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAACAGCAGTTTCAGCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGTGCATTCTGGCACTGTaGGCTAATGAACAACTGTCA | + |
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Preference number: 2 (lower is better) Translates to: ESLRSQFPLQYLLCFESQCILAL*ANEQLS Trigger: TGACAGTTGTTCATTAGCGCACAGTGCCAGAATGCA...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGACAGGCAAACTTACTTaGCACAAGCTGTCCAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: ESLRSQFPLQYLLCFESQTGKLT*HKLSSL Trigger: TAGACTGGACAGCTTGTGGCAAGTAAGTTTGCCTGT...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGGGTCACAATTCCCACTaGAGTATCTCCTTTGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRGHNSH*SISFVL Trigger: CAAAACAAAGGAGATACTGCAGTGGGAATTGTGACC...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | GTATGTCTTCACACTGGTGCAGCCAGAAAGCTCAAACTTGACAGGCTTGGCGATACTGGGAGTTTCATTTaGCAGTTTTCCAAAAATAGC | + |
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Preference number: 2 (lower is better) Translates to: VCLHTGAARKLKLDRLGDTGSFI*QFSKNS Trigger: GCTATTTTTGGAAAACTGGCAAATGAAACTCCCAGT...ATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGGTCTGTCTGCAAGCATGCTATAATTTCCCTCCCCGGTTACACTCCAAAATTTGTAGTGGAAAACTaGCAGCTGTTGTTACAGCAT | + |
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Preference number: 2 (lower is better) Translates to: SRSVCKHAIISLPGYTPKFVVEN*QLLLQH Trigger: ATGCTGTAACAACAGCTGCCAGTTTTCCACTACAAA...TTTTGGAGTGTAACCGGGGAGGGAAATTATAGCATGCTTGCAGACAGACCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | GAATCGGACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCCATAGCTTTATCACCTaGACAGCATTTGTTCTGACA | + |
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Preference number: 2 (lower is better) Translates to: ESDLTLSQPFLNKGHLFTHSFIT*TAFVLT Trigger: TGTCAGAACAAATGCTGTGCAGGTGATAAAGCTATG...GGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGCATAGCTTTATCACCTaGACAGCATTTGTTCTGACA | + |
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Preference number: 2 (lower is better) Translates to: ESLRSQFPLQYLLCFESQHSFIT*TAFVLT Trigger: TGTCAGAACAAATGCTGTGCAGGTGATAAAGCTATG...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR CCA 72 bp | TTTCATGATCTCGCCATCGGGGCATTTGAACTCCACTaGCAGAGTGGTGGTTCTGTGCGGTGTGCAGCAGCG | + |
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Preference number: 3 (lower is better) Translates to: FHDLAIGAFELH*QSGGSVRCAAA Trigger: CGCTGCTGCACACCGCACAGAACCACCACTCTGCCAGTGGAGTTCAAATGCCCCGATGGCGAGATCATGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR CAA 90 bp | ACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGAACCAGTGTCTGAGGTaGACAGACTACTTGTATGGC | + |
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Preference number: 3 (lower is better) Translates to: TQPHLVEDTCSALARAGLNQCLR*TDYLYG Trigger: GCCATACAAGTAGTCTGTCAACCTCAGACACTGGTT...CAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR GCA 72 bp | GCTCAGCTCTCGCTAGAGCAGGTCTGTCTGCAAGCATaGTATAATTTCCCTCCCCGGTTACACTCCAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: AQLSLEQVCLQA*YNFPPRLHSKK Trigger: CTTTTTGGAGTGTAACCGGGGAGGGAAATTATAGCATGCTTGCAGACAGACCTGCTCTAGCGAGAGCTGAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR TCA 72 bp | CAAGCTGTCCAGTCTAACAGACAAGGCTCTGACTCCTaGCAAGTGTCACTGGAATCAGAATGGTCAGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QAVQSNRQGSDS*QVSLESEWSEL Trigger: CAGCTCTGACCATTCTGATTCCAGTGACACTTGTCAGGAGTCAGAGCCTTGTCTGTTAGACTGGACAGCTTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR GCA 72 bp | TCCAGGAGACTCACCTCAGTGTGCATTCTGGCACTGTaGGCTAATGAACAACTGTCAAGTGTAAACTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: SRRLTSVCILAL*ANEQLSSVNCL Trigger: GAGACAGTTTACACTTGACAGTTGTTCATTAGCGCACAGTGCCAGAATGCACACTGAGGTGAGTCTCCTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CAA 90 bp | GAATCGGACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACCAGTGTCTGAGGTaGACAGACTACTTGTATGGC | + |
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Preference number: 3 (lower is better) Translates to: ESDLTLSQPFLNKGHLFTNQCLR*TDYLYG Trigger: GCCATACAAGTAGTCTGTCAACCTCAGACACTGGTT...GGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CAA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGTACAGGCAAACTTACTaGCCACAAGCTGTCCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRYRQTY*PQAVQS Trigger: AGACTGGACAGCTTGTGGCAAGTAAGTTTGCCTGTA...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CAA 90 bp | CCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGAATCGGATCCTACCTATGGTGTTaGGAGTTTGAGGCTATCAGT | + |
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Preference number: 3 (lower is better) Translates to: PQTSHNQRSSKHFLVGIGSYLWC*EFEAIS Trigger: ACTGATAGCCTCAAACTCCAAACACCATAGGTAGGA...TCCGATTCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR-3UTR CAA 90 bp | AGCAGGTCTGTCTGCAAGCATGCTATAATTTCCCTCCCCGGTTACACTCCAAAACCAGAAAGCTCAAACTaGACAGGCTTGGCGATTTTA | + |
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Preference number: 3 (lower is better) Translates to: SRSVCKHAIISLPGYTPKPESSN*TGLAIL Trigger: TAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGG...TTTTGGAGTGTAACCGGGGAGGGAAATTATAGCATGCTTGCAGACAGACCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR TCA 72 bp | CAGCAAGCACTTCCTGGTAGGAATCGGACCTTACCCTaGGCCAGCCATTTCTTAATAAAGGCCATTTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: QQALPGRNRTLP*ASHFLIKAICS Trigger: TGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTCCTACCAGGAAGTGCTTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR CCA 72 bp | AAAATAACCTCAGCTAGTACCTGTCTTTCTTTCTCCTaGCATCTCCACTGTTCCAGGAGACTCACCTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: KITSASTCLSFS*HLHCSRRLTSV Trigger: CACTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTACTAGCTGAGGTTATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR CCA 72 bp | AGACAGAAGGAGAAACAGCAATTACTACAACGGGAGTaGCCTTCCTCAAGCCTTTGTAGACTAGCCCTATGT | + |
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Preference number: 3 (lower is better) Translates to: RQKEKQQLLQRE*PSSSLCRLALC Trigger: ACATAGGGCTAGTCTACAAAGGCTTGAGGAAGGCCACTCCCGTTGTAGTAATTGCTGTTTCTCCTTCTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
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| 3UTR-3UTR CAA 90 bp | TATCACCTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCATCCTACCTATGGTGTTaGGAGTTTGAGGCTATCAGT | + |
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Preference number: 3 (lower is better) Translates to: YHLHSICSDRESLRSQFPSYLWC*EFEAIS Trigger: ACTGATAGCCTCAAACTCCAAACACCATAGGTAGGA...TGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAGGTGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR TCA 72 bp | CAATACATAGCTTTATCACCTGCACAGCATTTGTTCTaGCAGAGAGTCACTCAGGTCACAATTCCCACTGCA | + |
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Preference number: 3 (lower is better) Translates to: QYIALSPAQHLF*QRVTQVTIPTA Trigger: TGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAGGTGATAAAGCTATGTATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR GCA 72 bp | TCAATAAAAATCTGGCTTGTTACAGGCAAACTTACTTaGCACAAGCTGTCCAGTCTAACAGACAAGGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: SIKIWLVTGKLT*HKLSSLTDKAL Trigger: CAGAGCCTTGTCTGTTAGACTGGACAGCTTGTGGCAAGTAAGTTTGCCTGTAACAAGCCAGATTTTTATTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| 3UTR TCA 72 bp | GATAAGCTTCGTGTCCTACCTATGGTGTTTGGAGTTTaGGGCTATCAGTTTAAAATCCCAAAAGCACTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: DKLRVLPMVFGV*GYQFKIPKALK Trigger: TTTAAGTGCTTTTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAAGCTTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | ACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGTGCGCGCTGCAGTCCTaGCCCATAGCAGGCCGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TQPHLVEDTCSALARAGLCALQS*PIAGRV Trigger: CACCCGGCCTGCTATGGGCCAGGACTGCAGCGCGCA...CAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | CATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGTCTGCAAGCAGAGTGGTGGTTCTGTaGGGTGTGCAGCAGCGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: HLVEDTCSALARAGLSASRVVVL*GVQQRP Trigger: CGGCCGCTGCTGCACACCGCACAGAACCACCACTCT...GCTTGCAGACAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR CCA 90 bp | GTACCTGTCTTTCTTTCTCCTGGCATCTCCACTGTTCCAGGAGACTCACCTCAGTGCGCGCTGCAGTCCTaGCCCATAGCAGGCCGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VPVFLSPGISTVPGDSPQCALQS*PIAGRV Trigger: CACCCGGCCTGCTATGGGCCAGGACTGCAGCGCGCA...CTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR TCA 90 bp | GTATGTCTTCACACTGGTGCAGCCAGAAAGCTCAAACTTGACAGGCTTGGCGATGCACCAAGGCGAGGCTaGTGGGACCTGCGACGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VCLHTGAARKLKLDRLGDAPRRG*WDLRRR Trigger: CCTCCGTCGCAGGTCCCATCAGCCTCGCCTTGGTGC...ATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR TCA 90 bp | TCCACTGGCAGAGTGGTGGTTCTGTGCGGTGTGCAGCAGCGGCCGTCTGTGCACTTCTGTAAAACGGAGTaGCTAGGGGCAGAGGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: STGRVVVLCGVQQRPSVHFCKTE*LGAEDV Trigger: TACATCCTCTGCCCCTAGTCACTCCGTTTTACAGAA...GTGCACAGACGGCCGCTGCTGCACACCGCACAGAACCACCACTCTGCCAGTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | CTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCAGAGGGGCAGTCAGGGCTaGGCAGGCGCACGTCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: LHSICSDRESLRSQFPLQRGSQG*AGARPC Trigger: GCATGGACGTGCGCCTGCCCAGCCCTGACTGCCCCT...CTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | AAGCTGTCCAGTCTAACAGACAAGGCTCTGACTCCTGACAAGTGTCACTGGAATGCAGGCGCACGTCCATaGTGCACAGGGGCACGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KLSSLTDKALTPDKCHWNAGARP*CTGARS Trigger: GCTGCGTGCCCCTGTGCAGCATGGACGTGCGCCTGC...ATTCCAGTGACACTTGTCAGGAGTCAGAGCCTTGTCTGTTAGACTGGACAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR TCA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGGCACCAAGGCGAGGCTaGTGGGACCTGCGACGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRAPRRG*WDLRRR Trigger: CCTCCGTCGCAGGTCCCATCAGCCTCGCCTTGGTGC...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | CTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCAGCAGGGCCAACTGCTGTaGGGTCCTTGGGCTCGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: LHSICSDRESLRSQFPLQQGQLL*GPWARH Trigger: GTGACGAGCCCAAGGACCGCACAGCAGTTGGCCCTG...CTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GTACCTGTCTTTCTTTCTCCTGGCATCTCCACTGTTCCAGGAGACTCACCTCAGAGGCGCTCCACTCTGTaGTCTGGACCAGGCAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VPVFLSPGISTVPGDSPQRRSTL*SGPGSW Trigger: CCAACTGCCTGGTCCAGACCACAGAGTGGAGCGCCT...CTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGGCAGGCGCACGTCCATaGTGCACAGGGGCACGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: ESLRSQFPLQYLLCFESQAGARP*CTGARS Trigger: GCTGCGTGCCCCTGTGCAGCATGGACGTGCGCCTGC...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTCTGTCTGCAAGCATGCTATAATTTCCCTCCCCGGTTACACTCCAAAACTCCGATCTTGCGGTTaGCGGGGGAGCCGAAATCGC | + |
|
Preference number: 4 (lower is better) Translates to: SRSVCKHAIISLPGYTPKLRSCG*RGSRNR Trigger: GCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAG...TTTTGGAGTGTAACCGGGGAGGGAAATTATAGCATGCTTGCAGACAGACCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGAGGGGCAGTCAGGGCTaGGCAGGCGCACGTCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: ESLRSQFPLQYLLCFESQRGSQG*AGARPC Trigger: GCATGGACGTGCGCCTGCCCAGCCCTGACTGCCCCT...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR TCA 90 bp | CCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGAATCGGAATTTCCCAGGCAGCTTaGCCCTTCTCGGGAAGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PQTSHNQRSSKHFLVGIGISQAA*PFSGRG Trigger: GCCCCTTCCCGAGAAGGGTCAAGCTGCCTGGGAAAT...TCCGATTCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR TCA 90 bp | ATTCTGGCACTGTGCGCTAATGAACAACTGTCAAGTGTAAACTGTCTCGAAACCCAGCTTCGCAGGGCCTaGCCATGCAGAGGCGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ILALCANEQLSSVNCLETQLRRA*PCRGGS Trigger: AGAGCCGCCTCTGCATGGTCAGGCCCTGCGAAGCTG...GGTTTCGAGACAGTTTACACTTGACAGTTGTTCATTAGCGCACAGTGCCAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTCCGTACATCTTCCTGTAGTACAGGGACTCAAAGATGTCATTGTCCCCAGCTGCTGTGCGGTCCTTaGGCTCGTCACACACCCACT | + |
|
Preference number: 4 (lower is better) Translates to: CLRTSSCSTGTQRCHCPQLLCGP*ARHTPT Trigger: AGTGGGTGTGTGACGAGCCCAAGGACCGCACAGCAG...CTGGGGACAATGACATCTTTGAGTCCCTGTACTACAGGAAGATGTACGGAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | AAGCTGTCCAGTCTAACAGACAAGGCTCTGACTCCTGACAAGTGTCACTGGAATCTCCACTCTGTGGTCTaGACCAGGCAGTTGGCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: KLSSLTDKALTPDKCHWNLHSVV*TRQLAR Trigger: GCGAGCCAACTGCCTGGTCCAGACCACAGAGTGGAG...ATTCCAGTGACACTTGTCAGGAGTCAGAGCCTTGTCTGTTAGACTGGACAGCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | ACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGGCATTTGAACTCCACTaGCAGAGTGGTGGTTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: TQPHLVEDTCSALARAGLAFELH*QSGGSV Trigger: CACAGAACCACCACTCTGCCAGTGGAGTTCAAATGC...CAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR GCA 90 bp | CTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCAGATGCAGAGGCGGCTCTaGTTCTCCAGTCTGCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LHSICSDRESLRSQFPLQMQRRL*FSSLQK Trigger: CTTCTGCAGACTGGAGAAGCAGAGCCGCCTCTGCAT...CTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | GTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCATGCAGAGGCGGCTCTaGTTCTCCAGTCTGCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: VLKEQLDSASSSGGHMLSMQRRL*FSSLQK Trigger: CTTCTGCAGACTGGAGAAGCAGAGCCGCCTCTGCAT...GCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGGAAGAGGCCCTTGTGTaGGTCGCAGGGGTCACGCTC | + |
|
Preference number: 4 (lower is better) Translates to: ESLRSQFPLQYLLCFESQEEALV*VAGVTL Trigger: GAGCGTGACCCCTGCGACCCACACAAGGGCCTCTTC...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | AAGTGTAAACTGTCTCGAAACCAGTGTCTGAGGTTGACAGACTACTTGTATGGCGAAGAGGCCCTTGTGTaGGTCGCAGGGGTCACGCTC | + |
|
Preference number: 4 (lower is better) Translates to: KCKLSRNQCLRLTDYLYGEEALV*VAGVTL Trigger: GAGCGTGACCCCTGCGACCCACACAAGGGCCTCTTC...GCCATACAAGTAGTCTGTCAACCTCAGACACTGGTTTCGAGACAGTTTACACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | CATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGTCTGCAAGCTCCAGGCAAGTGCATTaGTATTTGCAGCTGCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: HLVEDTCSALARAGLSASSRQVH*YLQLLW Trigger: CCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGA...GCTTGCAGACAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | TATCACCTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCTGTGCGGTCCTTaGGCTCGTCACACACCCACT | + |
|
Preference number: 4 (lower is better) Translates to: YHLHSICSDRESLRSQFPLLCGP*ARHTPT Trigger: AGTGGGTGTGTGACGAGCCCAAGGACCGCACAGCAG...TGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAGGTGATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGCTCCACTCTGTGGTCTaGACCAGGCAGTTGGCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRLHSVV*TRQLAR Trigger: GCGAGCCAACTGCCTGGTCCAGACCACAGAGTGGAG...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | TATCACCTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCAAGGCGCTCCACTCTGTaGTCTGGACCAGGCAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: YHLHSICSDRESLRSQFPRRSTL*SGPGSW Trigger: CCAACTGCCTGGTCCAGACCACAGAGTGGAGCGCCT...TGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAGGTGATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR TCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGATTTCCCAGGCAGCTTaGCCCTTCTCGGGAAGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: ESLRSQFPLQYLLCFESQISQAA*PFSGRG Trigger: GCCCCTTCCCGAGAAGGGTCAAGCTGCCTGGGAAAT...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | GTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCCCCCATCCAGGCAAGTaGATTGGTATTTGCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VLKEQLDSASSSGGHMLSPHPGK*IGICSC Trigger: GCAGCTGCAAATACCAATGCACTTGCCTGGATGGGG...GCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | ACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGTCTGCTTCTCCAGTCTaGAGAAGGTATTGTCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: TQPHLVEDTCSALARAGLSASPV*RRYCHW Trigger: CCAATGACAATACCTTCTGCAGACTGGAGAAGCAGA...CAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GAATCGGACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCACTCCACTGGCAGAGTaGTGGTTCTGTGCGGTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: ESDLTLSQPFLNKGHLFTTPLAE*WFCAVC Trigger: GCACACCGCACAGAACCACCACTCTGCCAGTGGAGT...GGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR CCA 90 bp | CATCTAGTGGAGGACACATGCTCAGCTCTCGCTAGAGCAGGTCTGTCTGCAAGCAGCCAGACAGCTCCATaGTTAGATATTTCTGGAGAC | + |
|
Preference number: 4 (lower is better) Translates to: HLVEDTCSALARAGLSASSQTAP*LDISGD Trigger: GTCTCCAGAAATATCTAACCATGGAGCTGTCTGGCT...GCTTGCAGACAGACCTGCTCTAGCGAGAGCTGAGCATGTGTCCTCCACTAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| 3UTR CAA 72 bp | ACACTGGTGCAGCCAGAAAGCTCAAACTTGACAGGCTaGGCGATTTTAGGTGTCCGGATGCACTTTTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: TLVQPESSNLTG*AILGVRMHFLP Trigger: GGGCAAAAAGTGCATCCGGACACCTAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | CCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGAATCGGAACCGAAGACACAGGGTaGACCATCTTTGGCAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: PQTSHNQRSSKHFLVGIGTEDTG*TIFGSA Trigger: TGCACTGCCAAAGATGGTGCACCCTGTGTCTTCGGT...TCCGATTCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAACAGGGCCAACTGCTGTaGGGTCCTTGGGCTCGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: FVSYLWCLEFEAISLKSQQGQLL*GPWARH Trigger: GTGACGAGCCCAAGGACCGCACAGCAGTTGGCCCTG...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| 3UTR CAA 72 bp | TATGTCTTCACACTGGTGCAGCCAGAAAGCTCAAACTaGACAGGCTTGGCGATTTTAGGTGTCCGGATGCAC | + |
|
Preference number: 4 (lower is better) Translates to: YVFTLVQPESSN*TGLAILGVRMH Trigger: GTGCATCCGGACACCTAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCTCCAGGCAAGTGCATTaGTATTTGCAGCTGCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VLKEQLDSASSSGGHMLSSRQVH*YLQLLW Trigger: CCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGA...GCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGGGCTCGCATCATAGTTaGGTCTGGGCCAAATGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRGSHHS*VWAKCV Trigger: GACACATTTGGCCCAGACCCAACTATGATGCGAGCC...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGACCGAAGACACAGGGTaGACCATCTTTGGCAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: ESLRSQFPLQYLLCFESQTEDTG*TIFGSA Trigger: TGCACTGCCAAAGATGGTGCACCCTGTGTCTTCGGT...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | CCCCCACCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGAAAGTGCATTGGTATTTaGAGCTGCTTTGGAAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: PPPQTSHNQRSSKHFLVGKCIGI*SCFGRT Trigger: AGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTT...TCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGGTGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | GAGTCACTCAGGTCACAATTCCCACTGCAGTATCTCCTTTGTTTTGAATCACAGCCCCATCCAGGCAAGTaGATTGGTATTTGCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ESLRSQFPLQYLLCFESQPHPGK*IGICSC Trigger: GCAGCTGCAAATACCAATGCACTTGCCTGGATGGGG...CTGTGATTCAAAACAAAGGAGATACTGCAGTGGGAATTGTGACCTGAGTGACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | CTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCAGATGTCTTCACACTGGTaGAGCCAGAAAGCTCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: LHSICSDRESLRSQFPLQMSSHW*SQKAQT Trigger: AGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACAT...CTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR GCA 90 bp | GAATCGGACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCATTGGTATTTGCAGCTaGTTTGGAAGGACTCACCGC | + |
|
Preference number: 4 (lower is better) Translates to: ESDLTLSQPFLNKGHLFTIGICS*FGRTHR Trigger: GCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAAT...GGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | TGTTACAGGCAAACTTACTTGCCACAAGCTGTCCAGTCTAACAGACAAGGCTCTCATCATAGTTGGGTCTaGGCCAAATGTGTCTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CYRQTYLPQAVQSNRQGSHHSWV*AKCVFQ Trigger: CTGGAAGACACATTTGGCCCAGACCCAACTATGATG...AGAGCCTTGTCTGTTAGACTGGACAGCTTGTGGCAAGTAAGTTTGCCTGTAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | AGAGCTGAAACTGCTGTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGACATCATAGTTGGGTCTaGGCCAAATGTGTCTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RAETAVLKEQLDSASSSGHHSWV*AKCVFQ Trigger: CTGGAAGACACATTTGGCCCAGACCCAACTATGATG...TCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAACAGCAGTTTCAGCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| 3UTR CAA 72 bp | CTGTCTCGAAACCAGTGTCTGAGGTTGACAGACTACTaGTATGGCCATGACATAACGTTCTCACTTTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LSRNQCLRLTDY*YGHDITFSLWW Trigger: CCACCAAAGTGAGAACGTTATGTCATGGCCATACAAGTAGTCTGTCAACCTCAGACACTGGTTTCGAGACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | TATCACCTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCATCTGCTTCTCCAGTCTaGAGAAGGTATTGTCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: YHLHSICSDRESLRSQFPSASPV*RRYCHW Trigger: CCAATGACAATACCTTCTGCAGACTGGAGAAGCAGA...TGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAGGTGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAAGGCTCGCATCATAGTTaGGTCTGGGCCAAATGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FVSYLWCLEFEAISLKSQGSHHS*VWAKCV Trigger: GACACATTTGGCCCAGACCCAACTATGATGCGAGCC...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR GCA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGAAGTGCATTGGTATTTaGAGCTGCTTTGGAAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRKCIGI*SCFGRT Trigger: AGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTT...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CCA 90 bp | AAGTGTAAACTGTCTCGAAACCAGTGTCTGAGGTTGACAGACTACTTGTATGGCTGTATGTCTTCACACTaGTGCAGCCAGAAAGCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: KCKLSRNQCLRLTDYLYGCMSSH*CSQKAQ Trigger: TTGAGCTTTCTGGCTGCACCAGTGTGAAGACATACA...GCCATACAAGTAGTCTGTCAACCTCAGACACTGGTTTCGAGACAGTTTACACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR TCA 90 bp | ATTCTGGCACTGTGCGCTAATGAACAACTGTCAAGTGTAAACTGTCTCGAAACCTCATATTCTTTTTCATaGTCTCGCCATCGGGGCATT | + |
|
Preference number: 4 (lower is better) Translates to: ILALCANEQLSSVNCLETSYSFS*SRHRGI Trigger: AATGCCCCGATGGCGAGATCATGAAAAAGAATATGA...GGTTTCGAGACAGTTTACACTTGACAGTTGTTCATTAGCGCACAGTGCCAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| 3UTR CAA 72 bp | ATCAATAAAAATCTGGCTTGTTACAGGCAAACTTACTaGCCACAAGCTGTCCAGTCTAACAGACAAGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: INKNLACYRQTY*PQAVQSNRQGS Trigger: AGAGCCTTGTCTGTTAGACTGGACAGCTTGTGGCAAGTAAGTTTGCCTGTAACAAGCCAGATTTTTATTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| 3UTR CAA 72 bp | GAATCACAGATAAGCTTCGTGTCCTACCTATGGTGTTaGGAGTTTGAGGCTATCAGTTTAAAATCCCAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ESQISFVSYLWC*EFEAISLKSQK Trigger: CTTTTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAAGCTTATCTGTGATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS TCA 90 bp | AGGCTCACGCCGGCGGGGCAGTGCGGCGCTGCTTCGGCTGCGCACTaGCATTGCGCGCTGCAGTCCTGGCCCATAGCAGGCCGGGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RLTPAGQCGAASAAH*HCALQSWPIAGRVQ Trigger: CTGCACCCGGCCTGCTATGGGCCAGGACTGCAGCGCGCAATGTCAGTGCGCAGCCGAAGCAGCGCCGCACTGCCCCGCCGGCGTGAGCCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS GCA 90 bp | CAGCACCAGGCTCACGCCGGCGGGGCAGTGCGGCGCTGCTTCGGCTaGGCACTGACATTGCGCGCTGCAGTCCTGGCCCATAGCAGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: QHQAHAGGAVRRCFG*ALTLRAAVLAHSRP Trigger: CGGCCTGCTATGGGCCAGGACTGCAGCGCGCAATGTCAGTGCGCAGCCGAAGCAGCGCCGCACTGCCCCGCCGGCGTGAGCCTGGTGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS CCA 90 bp | CTTGCGGTTGGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTGTGTaGGTCGCAGGGGTCACGCTCCGTACACAGTTCTCCCAGCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LAVGGGAEIAEEALV*VAGVTLRTQFSQLL Trigger: AAGCAGCTGGGAGAACTGTGTACGGAGCGTGACCCCTGCGACCCACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
||
| CDS GCA 90 bp | CCATGCTGCACAGGGGCACGCAGCCCACGGCCCCATCCAGGCAAGTaGATTGGTATTTGCAGCTGCTTTGGAAGGACTCACCGCTGCGGT | + |
|
Preference number: 5 (lower is better) Translates to: PCCTGARSPRPHPGK*IGICSCFGRTHRCG Trigger: ACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGATGGGGCCGTGGGCTGCGTGCCCCTGTGCAGCATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS CCA 90 bp | CACAGGGTGCACCATCTTTGGCAGTGCACACTCCGATCTTGCGGTTaGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTGTGTGGGTCGC | + |
|
Preference number: 5 (lower is better) Translates to: HRVHHLWQCTLRSCG*RGSRNRRRGPCVGR Trigger: GCGACCCACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
||
| CDS GCA 90 bp | CGAAGACACAGGGTGCACCATCTTTGGCAGTGCACACTCCGATCTTaGGGTTGGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: RRHRVHHLWQCTLRS*GWRGSRNRRRGPCV Trigger: CACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTGTGTCTTCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS CCA 90 bp | CCCACGGCCCCATCCAGGCAAGTGCATTGGTATTTGCAGCTGCTTTaGAAGGACTCACCGCTGCGGTACACCGACCCACCGAAGACACAG | + |
|
Preference number: 5 (lower is better) Translates to: PTAPSRQVHWYLQLL*KDSPLRYTDPPKTQ Trigger: CTGTGTCTTCGGTGGGTCGGTGTACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGATGGGGCCGTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | ATGAGTTCGTGTCCCTTACTTCCTGGCTTTACGCCATGTCTCCGTACATCTTCCACTCCGATCTTGCGGTaGGCGGGGGAGCCGAAATCG | + |
|
Preference number: 5 (lower is better) Translates to: MSSCPLLPGFTPCLRTSSTPILR*AGEPKS Trigger: CGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGT...GGAAGATGTACGGAGACATGGCGTAAAGCCAGGAAGTAAGGGACACGAACTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | GTACCTGTCTTTCTTTCTCCTGGCATCTCCACTGTTCCAGGAGACTCACCTCAGCATTTCCCAGGCAGCTaGACCCTTCTCGGGAAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: VPVFLSPGISTVPGDSPQHFPGS*TLLGKG Trigger: CCCCTTCCCGAGAAGGGTCAAGCTGCCTGGGAAATG...CTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | AGCAGGTCTGTCTGCAAGCATGCTATAATTTCCCTCCCCGGTTACACTCCAAAAACTCCGATCTTGCGGTaGGCGGGGGAGCCGAAATCG | + |
|
Preference number: 5 (lower is better) Translates to: SRSVCKHAIISLPGYTPKTPILR*AGEPKS Trigger: CGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGT...TTTTGGAGTGTAACCGGGGAGGGAAATTATAGCATGCTTGCAGACAGACCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | GTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAGGACACATGCTCAGCCAGGGTGCACCATCTTaGGCAGTGCACACTCCGATC | + |
|
Preference number: 5 (lower is better) Translates to: VLKEQLDSASSSGGHMLSQGAPS*AVHTPI Trigger: GATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTG...GCTGAGCATGTGTCCTCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | GACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCAACAGGACTGCTGTGCGGTCCTaGGGCTCGTCACACACCCAC | + |
|
Preference number: 5 (lower is better) Translates to: DLTLSQPFLNKGHLFTNRTAVRS*GSSHTH Trigger: GTGGGTGTGTGACGAGCCCAAGGACCGCACAGCAGT...CCTGTTGGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | AGAGCTGAAACTGCTGTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGAACTGCTGTGCGGTCCTaGGGCTCGTCACACACCCAC | + |
|
Preference number: 5 (lower is better) Translates to: RAETAVLKEQLDSASSSGTAVRS*GSSHTH Trigger: GTGGGTGTGTGACGAGCCCAAGGACCGCACAGCAGT...TCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAACAGCAGTTTCAGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | ATGAGTTCGTGTCCCTTACTTCCTGGCTTTACGCCATGTCTCCGTACATCTTCCGTCTGGACCAGGCAGTaGGCTCGCATCATAGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: MSSCPLLPGFTPCLRTSSVWTRQ*ARIIVG Trigger: CCCAACTATGATGCGAGCCAACTGCCTGGTCCAGAC...GGAAGATGTACGGAGACATGGCGTAAAGCCAGGAAGTAAGGGACACGAACTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | CCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGAATCGGACAGGGTGCACCATCTTaGGCAGTGCACACTCCGATC | + |
|
Preference number: 5 (lower is better) Translates to: PQTSHNQRSSKHFLVGIGQGAPS*AVHTPI Trigger: GATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTG...TCCGATTCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | GAATCGGACCTTACCCTGAGCCAGCCATTTCTTAATAAAGGCCATTTGTTCACCGTCTGGACCAGGCAGTaGGCTCGCATCATAGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: ESDLTLSQPFLNKGHLFTVWTRQ*ARIIVG Trigger: CCCAACTATGATGCGAGCCAACTGCCTGGTCCAGAC...GGTGAACAAATGGCCTTTATTAAGAAATGGCTGGCTCAGGGTAAGGTCCGATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | AGAGCTGAAACTGCTGTTCTTAAAGAACAGCTGGACTCAGCCTCATCTAGTGGATCGCCATCGGGGCATTaGAACTCCACTGGCAGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: RAETAVLKEQLDSASSSGSPSGH*NSTGRV Trigger: CACTCTGCCAGTGGAGTTCAAATGCCCCGATGGCGA...TCCACTAGATGAGGCTGAGTCCAGCTGTTCTTTAAGAACAGCAGTTTCAGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR CAA 90 bp | CCCCCACCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGACAAGTGCATTGGTATTaGCAGCTGCTTTGGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: PPPQTSHNQRSSKHFLVGQVHWY*QLLWKD Trigger: GTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTG...TCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | CCCCCACCCCAAACCAGTCATAATCAAAGAAGCAGCAAGCACTTCCTGGTAGGAAGTCTGCAGAAGGTATaGTCATTGGTAACTCGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: PPPQTSHNQRSSKHFLVGSLQKV*SLVTRV Trigger: CACCCGAGTTACCAATGACAATACCTTCTGCAGACT...TCCTACCAGGAAGTGCTTGCTGCTTCTTTGATTATGACTGGTTTGGGGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS CCA 90 bp | GCTCCATGGTTAGATATTTCTGGAGACAACAGGCCTCTAATAACATaGGAGGTGAGACAGCCAGCTCGGTTCTCTTCCCTGTCATTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: APWLDISGDNRPLIT*EVRQPARFSSLSFC Trigger: ACAGAATGACAGGGAAGAGAACCGAGCTGGCTGTCTCACCTCCCATGTTATTAGAGGCCTGTTGTCTCCAGAAATATCTAACCATGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAACATTTCCCAGGCAGCTaGACCCTTCTCGGGAAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: FVSYLWCLEFEAISLKSQHFPGS*TLLGKG Trigger: CCCCTTCCCGAGAAGGGTCAAGCTGCCTGGGAAATG...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | CTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCAGCAGAAGGTATTGTCATaGGTAACTCGGGTGGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: LHSICSDRESLRSQFPLQQKVLS*VTRVEM Trigger: CATCTCCACCCGAGTTACCAATGACAATACCTTCTG...CTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | CTGCACAGCATTTGTTCTGACAGAGAGTCACTCAGGTCACAATTCCCACTGCAGAGTCTGCAGAAGGTATaGTCATTGGTAACTCGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: LHSICSDRESLRSQFPLQSLQKV*SLVTRV Trigger: CACCCGAGTTACCAATGACAATACCTTCTGCAGACT...CTGCAGTGGGAATTGTGACCTGAGTGACTCTCTGTCAGAACAAATGCTGTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | GTACCTGTCTTTCTTTCTCCTGGCATCTCCACTGTTCCAGGAGACTCACCTCAGCCAGAAAGCTCAAACTaGACAGGCTTGGCGATTTTA | + |
|
Preference number: 5 (lower is better) Translates to: VPVFLSPGISTVPGDSPQPESSN*TGLAIL Trigger: TAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGG...CTGAGGTGAGTCTCCTGGAACAGTGGAGATGCCAGGAGAAAGAAAGACAGGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS-3UTR CAA 90 bp | AGCAGGTCTGTCTGCAAGCATGCTATAATTTCCCTCCCCGGTTACACTCCAAAACAGAAGGTATTGTCATaGGTAACTCGGGTGGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: SRSVCKHAIISLPGYTPKQKVLS*VTRVEM Trigger: CATCTCCACCCGAGTTACCAATGACAATACCTTCTG...TTTTGGAGTGTAACCGGGGAGGGAAATTATAGCATGCTTGCAGACAGACCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAAGTATTTGCAGCTGCTTaGGAAGGACTCACCGCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: FVSYLWCLEFEAISLKSQVFAAA*EGLTAA Trigger: CGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATAC...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | AAGTGTAAACTGTCTCGAAACCAGTGTCTGAGGTTGACAGACTACTTGTATGGCATCCAGGCAAGTGCATaGGTATTTGCAGCTGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: KCKLSRNQCLRLTDYLYGIQASA*VFAAAL Trigger: CAAAGCAGCTGCAAATACCAATGCACTTGCCTGGAT...GCCATACAAGTAGTCTGTCAACCTCAGACACTGGTTTCGAGACAGTTTACACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAACAAGTGCATTGGTATTaGCAGCTGCTTTGGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: FVSYLWCLEFEAISLKSQQVHWY*QLLWKD Trigger: GTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTG...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS-3UTR CAA 90 bp | TTCGTGTCCTACCTATGGTGTTTGGAGTTTGAGGCTATCAGTTTAAAATCCCAAGTCCGGATGCACTTTTaGCCCTTCTTAATGTTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: FVSYLWCLEFEAISLKSQVRMHF*PFLMFS Trigger: GGAAAACATTAAGAAGGGCAAAAAGTGCATCCGGAC...TTGGGATTTTAAACTGATAGCCTCAAACTCCAAACACCATAGGTAGGACACGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
||
| CDS CAA 90 bp | CACGCCGGCGGGGCAGTGCGGCGCTGCTTCGGCTGCGCACTGACATaGCGCGCTGCAGTCCTGGCCCATAGCAGGCCGGGTGCAGAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: HAGGAVRRCFGCALT*RAAVLAHSRPGAES Trigger: GCTCTCTGCACCCGGCCTGCTATGGGCCAGGACTGCAGCGCGCAATGTCAGTGCGCAGCCGAAGCAGCGCCGCACTGCCCCGCCGGCGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS TCA 72 bp | CCGGCGGGGCAGTGCGGCGCTGCTTCGGCTGCGCACTaGCATTGCGCGCTGCAGTCCTGGCCCATAGCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: PAGQCGAASAAH*HCALQSWPIAG Trigger: GCCTGCTATGGGCCAGGACTGCAGCGCGCAATGTCAGTGCGCAGCCGAAGCAGCGCCGCACTGCCCCGCCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS GCA 72 bp | GCTCACGCCGGCGGGGCAGTGCGGCGCTGCTTCGGCTaGGCACTGACATTGCGCGCTGCAGTCCTGGCCCAT | + |
|
Preference number: 6 (lower is better) Translates to: AHAGGAVRRCFG*ALTLRAAVLAH Trigger: ATGGGCCAGGACTGCAGCGCGCAATGTCAGTGCGCAGCCGAAGCAGCGCCGCACTGCCCCGCCGGCGTGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
||
| CDS GCA 72 bp | CCAGTCGGTAGGCAGCTAGGGCAGGGCCAACTGCTGTaGGGTCCTTGGGCTCGTCACACACCCACTCCTCGC | + |
|
Preference number: 6 (lower is better) Translates to: PVGRQLGQGQLL*GPWARHTPTPR Trigger: GCGAGGAGTGGGTGTGTGACGAGCCCAAGGACCGCACAGCAGTTGGCCCTGCCCTAGCTGCCTACCGACTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
||
| CDS CCA 72 bp | GGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTGTGTaGGTCGCAGGGGTCACGCTCCGTACACAGTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: GGGAEIAEEALV*VAGVTLRTQFS Trigger: GGAGAACTGTGTACGGAGCGTGACCCCTGCGACCCACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
||
| CDS CAA 72 bp | CGGTTGGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTaGTGTGGGTCGCAGGGGTCACGCTCCGTACACAGT | + |
|
Preference number: 6 (lower is better) Translates to: RLAGEPKSQKRP*CGSQGSRSVHS Trigger: ACTGTGTACGGAGCGTGACCCCTGCGACCCACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS CAA 90 bp | CCGATCTTGCGGTTGGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTaGTGTGGGTCGCAGGGGTCACGCTCCGTACACAGTTCTCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: PILRLAGEPKSQKRP*CGSQGSRSVHSSPS Trigger: GCTGGGAGAACTGTGTACGGAGCGTGACCCCTGCGACCCACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS CAA 90 bp | AGGGGCACGCAGCCCACGGCCCCATCCAGGCAAGTGCATTGGTATTaGCAGCTGCTTTGGAAGGACTCACCGCTGCGGTACACCGACCCA | + |
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Preference number: 6 (lower is better) Translates to: RGTQPTAPSRQVHWY*QLLWKDSPLRYTDP Trigger: TGGGTCGGTGTACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGATGGGGCCGTGGGCTGCGTGCCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS CAA 90 bp | ACACAGGGTGCACCATCTTTGGCAGTGCACACTCCGATCTTGCGGTaGGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTGTGTGGGTCG | + |
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Preference number: 6 (lower is better) Translates to: TQGAPSLAVHTPILR*AGEPKSQKRPLCGS Trigger: CGACCCACACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS GCA 72 bp | AGGGTGCACCATCTTTGGCAGTGCACACTCCGATCTTaGGGTTGGCGGGGGAGCCGAAATCGCAGAAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: RVHHLWQCTLRS*GWRGSRNRRRG Trigger: GCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS GCA 72 bp | ACCGCTGCGGTACACCGACCCACCGAAGACACAGGGTaGACCATCTTTGGCAGTGCACACTCCGATCTTGCG | + |
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Preference number: 6 (lower is better) Translates to: TAAVHRPTEDTG*TIFGSAHSDLA Trigger: CGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTGTGTCTTCGGTGGGTCGGTGTACCGCAGCGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS CAA 72 bp | GCACCATCTTTGGCAGTGCACACTCCGATCTTGCGGTaGGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: APSLAVHTPILR*AGEPKSQKRPL Trigger: CAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS CAA 72 bp | CAGGGTGCACCATCTTTGGCAGTGCACACTCCGATCTaGCGGTTGGCGGGGGAGCCGAAATCGCAGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: QGAPSLAVHTPI*RLAGEPKSQKR Trigger: CCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS CAA 72 bp | TACACCGACCCACCGAAGACACAGGGTGCACCATCTTaGGCAGTGCACACTCCGATCTTGCGGTTGGCGGGG | + |
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Preference number: 6 (lower is better) Translates to: YTDPPKTQGAPS*AVHTPILRLAG Trigger: CCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTGCACCCTGTGTCTTCGGTGGGTCGGTGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS CAA 90 bp | GCCCACGGCCCCATCCAGGCAAGTGCATTGGTATTTGCAGCTGCTTaGGAAGGACTCACCGCTGCGGTACACCGACCCACCGAAGACACA | + |
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Preference number: 6 (lower is better) Translates to: AHGPIQASALVFAAA*EGLTAAVHRPTEDT Trigger: TGTGTCTTCGGTGGGTCGGTGTACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGATGGGGCCGTGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS GCA 72 bp | CGGCCCCATCCAGGCAAGTGCATTGGTATTTGCAGCTaGTTTGGAAGGACTCACCGCTGCGGTACACCGACC | + |
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Preference number: 6 (lower is better) Translates to: RPHPGKCIGICS*FGRTHRCGTPT Trigger: GGTCGGTGTACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGATGGGGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS CCA 72 bp | CACCATCTTTGGCAGTGCACACTCCGATCTTGCGGTTaGCGGGGGAGCCGAAATCGCAGAAGAGGCCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: HHLWQCTLRSCG*RGSRNRRRGPC Trigger: ACAAGGGCCTCTTCTGCGATTTCGGCTCCCCCGCCAACCGCAAGATCGGAGTGTGCACTGCCAAAGATGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020171.12 ENSMUST00000129142.2 ENSMUST00000176228.2 |
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| CDS CAA 72 bp | CCCATCCAGGCAAGTGCATTGGTATTTGCAGCTGCTTaGGAAGGACTCACCGCTGCGGTACACCGACCCACC | + |
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Preference number: 6 (lower is better) Translates to: PIQASALVFAAA*EGLTAAVHRPT Trigger: GGTGGGTCGGTGTACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAATGCACTTGCCTGGATGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS CAA 72 bp | GAACAGGCGCTCCACTCTGTGGTCTGGACCAGGCAGTaGGCTCGCATCATAGTTGGGTCTGGGCCAAATGTG | + |
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Preference number: 6 (lower is better) Translates to: EQALHSVVWTRQ*ARIIVGSGPNV Trigger: CACATTTGGCCCAGACCCAACTATGATGCGAGCCAACTGCCTGGTCCAGACCACAGAGTGGAGCGCCTGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS GCA 72 bp | ATTGGTATTTGCAGCTGCTTTGGAAGGACTCACCGCTaGGGTACACCGACCCACCGAAGACACAGGGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: IGICSCFGRTHR*GTPTHRRHRVH Trigger: GTGCACCCTGTGTCTTCGGTGGGTCGGTGTACCGCAGCGGTGAGTCCTTCCAAAGCAGCTGCAAATACCAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS GCA 72 bp | TCAGCTTCGCAGGGCCTGACCATGCAGAGGCGGCTCTaGTTCTCCAGTCTGCAGAAGGTATTGTCATTGGTA | + |
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Preference number: 6 (lower is better) Translates to: SASQGLTMQRRL*FSSLQKVLSLV Trigger: TACCAATGACAATACCTTCTGCAGACTGGAGAAGCAGAGCCGCCTCTGCATGGTCAGGCCCTGCGAAGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020171.12 ENSMUST00000176228.2 |
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| CDS CAA 90 bp | TATGTCTTCACACTGGTGCAGCCAGAAAGCTCAAACTTGACAGGCTaGGCGATTTTAGGTGTCCGGATGCACTTTTTGCCCTTCTTAATG | + |
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Preference number: 6 (lower is better) Translates to: YVFTLVQPESSNLTG*AILGVRMHFLPFLM Trigger: CATTAAGAAGGGCAAAAAGTGCATCCGGACACCTAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020171.12 |
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