Pregenerated sensors for CCN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028195Ensembl transcript IDs: ENSMUST00000029846.5
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGCTCCAGTACTATGAAGCGAAGTCTTCTCCAACTGCGGCTGCGCTaGTGTCCGTCCACATCAGCCCCTTGGCATTCTCCAACTGCGGCT | + |
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Preference number: 1 (lower is better) Translates to: RSSTMKRSLLQLRLR*CPSTSAPWHSPTAA Trigger: AGCCGCAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGACTTCGCTTCATAGTACTGGAGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR TCA 90 bp | ATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTACTCAAGAATaGGCAAGGCACCATTCATCCTCCGCCCACCCACGTCTCCATGAT | + |
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Preference number: 1 (lower is better) Translates to: ISPLAVLKYPNATQE*ARHHSSSAHPRLHD Trigger: ATCATGGAGACGTGGGTGGGCGGAGGATGAATGGTGCCTTGCTCATTCTTGAGTAGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR CCA 90 bp | TTTACAAACAGAAAACAGAACGTCATCCGTAAACATGCTCCAATATaGAGCAATAATGCCCGCTCCAGTACTATGAAGCGAAGTCTTCTC | + |
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Preference number: 1 (lower is better) Translates to: FTNRKQNVIRKHAPI*SNNARSSTMKRSLL Trigger: GAGAAGACTTCGCTTCATAGTACTGGAGCGGGCATTATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCTGTTTGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR CAA 90 bp | TCTTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTaGGCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAG | + |
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Preference number: 2 (lower is better) Translates to: SSPTAAALLSVHISP*AFSNCGCAAVRPHQ Trigger: CTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR-3UTR TCA 90 bp | CAGTACTATGAAGCGAAGTCTTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACGCCCCTTGGCAGTTTTaGAATACCCTAATGCTACTC | + |
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Preference number: 2 (lower is better) Translates to: QYYEAKSSPTAAALLSVHAPWQF*NTLMLL Trigger: GAGTAGCATTAGGGTATTTCAAAACTGCCAAGGGGC...GTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGACTTCGCTTCATAGTACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR GCA 72 bp | CTGTCCGTCCACATCAGCCCCTTGGCATTCTCCAACTaGGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTT | + |
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Preference number: 3 (lower is better) Translates to: LSVHISPLAFSN*GCAAVRPHQPL Trigger: AAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR TCA 72 bp | AAGGCACCATTCATCCTCCGCCCACCCACGTCTCCATaGTGCTTGCGCTTCTCCTCTGTCCAGCCCACACTA | + |
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Preference number: 3 (lower is better) Translates to: KAPFILRPPTSP*CLRFSSVQPTL Trigger: TAGTGTGGGCTGGACAGAGGAGAAGCGCAAGCATCATGGAGACGTGGGTGGGCGGAGGATGAATGGTGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTACTATGAAGCGAAGTCTTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCAGCCCCTTGGCAGTTTaGAAATACCCTAATGCTACT | + |
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Preference number: 3 (lower is better) Translates to: SSTMKRSLLQLRLRCCPSSPLAV*KYPNAT Trigger: AGTAGCATTAGGGTATTTCAAAACTGCCAAGGGGCT...GGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGACTTCGCTTCATAGTACTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR-3UTR CAA 90 bp | GCTCCAATATGGAGCAATAATGCCCGCTCCAGTACTATGAAGCGAAGTCTTCTCGTCCACATCAGCCCCTaGGCAGTTTTGAAATACCCT | + |
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Preference number: 3 (lower is better) Translates to: APIWSNNARSSTMKRSLLVHISP*AVLKYP Trigger: AGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGAC...GAGAAGACTTCGCTTCATAGTACTGGAGCGGGCATTATTGCTCCATATTGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR CCA 72 bp | AGAAAACAGAACGTCATCCGTAAACATGCTCCAATATaGAGCAATAATGCCCGCTCCAGTACTATGAAGCGA | + |
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Preference number: 3 (lower is better) Translates to: RKQNVIRKHAPI*SNNARSSTMKR Trigger: TCGCTTCATAGTACTGGAGCGGGCATTATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR CAA 72 bp | ACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTaGGCATTCTCCAACTGCGGCTGCGCTGCTGTCCGT | + |
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Preference number: 4 (lower is better) Translates to: TAAALLSVHISP*AFSNCGCAAVR Trigger: ACGGACAGCAGCGCAGCCGCAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTAGGCGGCGGGGCAGGTaGAGAGCGCCAGTCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ALLSVHISPLAVLKYPNARRRGR*RAPVWS Trigger: TGACCAGACTGGCGCTCTCCACCTGCCCCGCCGCCT...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTCTCCCGGGGCGCACTTaGGTGCCTCCAGAGGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: ALLSVHISPLAVLKYPNALPGRT*VPPEGS Trigger: ACTGCCCTCTGGAGGCACCCAAGTGCGCCCCGGGAG...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | CGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCATTCTCCAACTGCGGCTGGGAGAGACAGTTCTTaGGGACACAGAGGAATGCAG | + |
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Preference number: 4 (lower is better) Translates to: RLRCCPSTSAPWHSPTAAGRDSS*GHRGMQ Trigger: CTGCATTCCTCTGTGTCCCCAAGAACTGTCTCTCCC...AGCCGCAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTCACCAGGCGGCACTCTaGGTTGTCATTGGTAACTCG | + |
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Preference number: 4 (lower is better) Translates to: AFSNCGCAAVRPHQPLGSHQAAL*VVIGNS Trigger: CGAGTTACCAATGACAACCCAGAGTGCCGCCTGGTG...ACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR TCA 90 bp | CCCCTTGGCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTAGGAAGCCTCTTCAGTaGGCTGCCTTTTCCAATTGC | + |
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Preference number: 4 (lower is better) Translates to: PLGILQLRLRCCPSTSAPRKPLQ*AAFSNC Trigger: GCAATTGGAAAAGGCAGCTCACTGAAGAGGCTTCCT...AGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGCCAAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | TCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCATTCTCCAGCTGGCGCCGAAATTaGATTCCAACCCCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SPTAAALLSVHISPLAFSSWRRN*IPTPWC Trigger: ACACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCT...GGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | TCCTCCGCCCACCCACGTCTCCATGATGCTTGCGCTTCTCCTCTGTCCAGCCCACTTCTGACTGAGCTCTaGAGATCCCTTTCAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: SSAHPRLHDACASPLSSPLLTEL*RSLSER Trigger: CCGCTCTGAAAGGGATCTGCAGAGCTCAGTCAGAAG...TGGGCTGGACAGAGGAGAAGCGCAAGCATCATGGAGACGTGGGTGGGCGGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | AGCCCCTTGGCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCTATATTCACAGGGTCTaGCTTCTGACTGAGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPLAFSNCGCAAVRPHQPYIHRV*LLTELC Trigger: GCAGAGCTCAGTCAGAAGGCAGACCCTGTGAATATA...GGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGCCAAGGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR TCA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTGGGCGTGCAGAGGGTTaGAAAGAACTCGCGGTTCGG | + |
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Preference number: 4 (lower is better) Translates to: ALLSVHISPLAVLKYPNAGRAEG*KELAVR Trigger: CCGAACCGCGAGTTCTTTTCAACCCTCTGCACGCCC...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTGTTTACAGTTGGGCTaGAAGCTTTCCCCGTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: AFSNCGCAAVRPHQPLGSCLQLG*KLSPFW Trigger: CCAAAACGGGGAAAGCTTCCAGCCCAACTGTAAACA...ACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | TCCAGTACTATGAAGCGAAGTCTTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCTGGGACAGCCCAGATTaGGGAGAGACAGTTCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: SSTMKRSLLQLRLRCCPSWDSPD*GETVLG Trigger: CCCAAGAACTGTCTCTCCCCAATCTGGGCTGTCCCA...GGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGACTTCGCTTCATAGTACTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTGGGATTTCTTGGTCTTaGTGCATTTCTTGCCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: PLGILQLRLRCCPSTSAPGISWS*CISCPF Trigger: AAAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCC...AGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGCCAAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTGCCAGTCTGGTCAAGTaGAGAAGGGTGACGGCGACA | + |
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Preference number: 4 (lower is better) Translates to: ALLSVHISPLAVLKYPNAASLVK*RRVTAT Trigger: TGTCGCCGTCACCCTTCTCCACTTGACCAGACTGGC...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTTGCATTCCAACCCCTTaGTGTGGTCGCAGGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ALLSVHISPLAVLKYPNACIPTP*CGRRAE Trigger: CTCAGCCCTGCGACCACACCAAGGGGTTGGAATGCA...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | AGAAAACAGAACGTCATCCGTAAACATGCTCCAATATGGAGCAATAATGCCCGCCGGGGCGCACTTGGGTaGCTCCAGAGGGCAGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: RKQNVIRKHAPIWSNNARRGALG*LQRAVA Trigger: TGCCACTGCCCTCTGGAGGCACCCAAGTGCGCCCCG...GCGGGCATTATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | ACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCATTCTCCAACTGCAAATCTGACTGGTTCTaGGGATTTCTTGGTCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: TAAALLSVHISPLAFSNCKSDWF*GFLGLA Trigger: AGCAAGACCAAGAAATCCCCAGAACCAGTCAGATTT...GCAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR TCA 90 bp | TCTGTTTGCAGTTTTAGAGTGCAGGTAGCTGCCCCAAGGACACTCACAGAGTGTACAGGGTCTGCCTTCTaGCTGAGCTCTGCAGATCCC | + |
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Preference number: 4 (lower is better) Translates to: SVCSFRVQVAAPRTLTECTGSAF*LSSADP Trigger: GGGATCTGCAGAGCTCAGTCAGAAGGCAGACCCTGT...ACACTCTGTGAGTGTCCTTGGGGCAGCTACCTGCACTCTAAAACTGCAAACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR CAA 72 bp | ACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTaGGCAGTTTTGAAATACCCTAATGCTACTCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: TAAALLSVHISP*AVLKYPNATQE Trigger: TTCTTGAGTAGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | AGAAAACAGAACGTCATCCGTAAACATGCTCCAATATGGAGCAATAATGCCCGCGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: RKQNVIRKHAPIWSNNARGDTEE*SPRRHQ Trigger: TTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCC...GCGGGCATTATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | AATACCCTAATGCTACTCAAGAATGAGCAAGGCACCATTCATCCTCCGCCCACCGCATCTTCACAGTTCTaGTCTGCAGAGGTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NTLMLLKNEQGTIHPPPTASSQF*SAEVCS Trigger: GCTGCACACCTCTGCAGACCAGAACTGTGAAGATGC...GGTGGGCGGAGGATGAATGGTGCCTTGCTCATTCTTGAGTAGCATTAGGGTATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | GCTCCAATATGGAGCAATAATGCCCGCTCCAGTACTATGAAGCGAAGTCTTCTCGGAACGATGCCTCGTTaGGATGCGGGCAGTTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: APIWSNNARSSTMKRSLLGTMPR*DAGSCS Trigger: ACTACAACTGCCCGCATCCCAACGAGGCATCGTTCC...GAGAAGACTTCGCTTCATAGTACTGGAGCGGGCATTATTGCTCCATATTGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR TCA 90 bp | TCAATCTTAAAACACCTGGTTTCTGTTTGCAGTTTTAGAGTGCAGGTAGCTGCCGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SILKHLVSVCSFRVQVAAVWSQG*VLLQSS Trigger: CGAGGACTGCAGCAAAACTCAGCCCTGCGACCACAC...GGCAGCTACCTGCACTCTAAAACTGCAAACAGAAACCAGGTGTTTTAAGATTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | CAGTACTATGAAGCGAAGTCTTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACCGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: QYYEAKSSPTAAALLSVHRFGRF*SYIHRV Trigger: GACCCTGTGAATATAACTCCAGAATCTACCAAAACG...GTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGACTTCGCTTCATAGTACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR GCA 90 bp | GTTTCTGTTTGCAGTTTTAGAGTGCAGGTAGCTGCCCCAAGGACACTCACAGAGGCCTCTTCAGTGAGCTaGCTTTTCCAATTGCGATTA | + |
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Preference number: 4 (lower is better) Translates to: VSVCSFRVQVAAPRTLTEASSVS*LFQLRL Trigger: TAATCGCAATTGGAAAAGGCAGCTCACTGAAGAGGC...CTCTGTGAGTGTCCTTGGGGCAGCTACCTGCACTCTAAAACTGCAAACAGAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | TGCTACTCAAGAATGAGCAAGGCACCATTCATCCTCCGCCCACCCACGTCTCCAATAAGTAAATCTGACTaGTTCTGGGGATTTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: CYSRMSKAPFILRPPTSPISKSD*FWGFLG Trigger: ACCAAGAAATCCCCAGAACCAGTCAGATTTACTTAT...TGGAGACGTGGGTGGGCGGAGGATGAATGGTGCCTTGCTCATTCTTGAGTAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | TTACAAACAGAAAACAGAACGTCATCCGTAAACATGCTCCAATATGGAGCAATATCCCTTTCAGAGCGGTaGAGCTGGCGCCGAAATTGC | + |
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Preference number: 4 (lower is better) Translates to: LQTENRTSSVNMLQYGAISLSER*SWRRNC Trigger: GCAATTTCGGCGCCAGCTCCACCGCTCTGAAAGGGA...TATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCTGTTTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | TTACAAACAGAAAACAGAACGTCATCCGTAAACATGCTCCAATATGGAGCAATATCAGAGCGGTGGAGCTaGCGCCGAAATTGCATTCCA | + |
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Preference number: 4 (lower is better) Translates to: LQTENRTSSVNMLQYGAISERWS*RRNCIP Trigger: TGGAATGCAATTTCGGCGCCAGCTCCACCGCTCTGA...TATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCTGTTTGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | TCTGTTTGCAGTTTTAGAGTGCAGGTAGCTGCCCCAAGGACACTCACAGAGTGTTTACATTTGCAGGACTaGATCATCATGACATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: SVCSFRVQVAAPRTLTECLHLQD*IIMTFL Trigger: CAAGAATGTCATGATGATCCAGTCCTGCAAATGTAA...ACACTCTGTGAGTGTCCTTGGGGCAGCTACCTGCACTCTAAAACTGCAAACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CCA 90 bp | TTTCATTTACTTCTGTCAAAGGACAAGCAGGGCTTTCACTTGGCCCAACTAATCTCAATACATGTGCACTaGTGTTTACAGTTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FHLLLSKDKQGFHLAQLISIHVH*CLQLGW Trigger: CCAGCCCAACTGTAAACACCAGTGCACATGTATTGA...GATTAGTTGGGCCAAGTGAAAGCCCTGCTTGTCCTTTGACAGAAGTAAATGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR TCA 90 bp | TTACTTCTGTCAAAGGACAAGCAGGGCTTTCACTTGGCCCAACTAATCTTATTTACTTGTGGATGTCATTaGATAGGCTGTACAGTCGGA | + |
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Preference number: 4 (lower is better) Translates to: LLLSKDKQGFHLAQLILFTCGCH*IGCTVG Trigger: TCCGACTGTACAGCCTATTCAATGACATCCACAAGT...AAATAAGATTAGTTGGGCCAAGTGAAAGCCCTGCTTGTCCTTTGACAGAAGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR TCA 90 bp | TCAATCTTAAAACACCTGGTTTCTGTTTGCAGTTTTAGAGTGCAGGTAGCTGCCAGGACTGGATCATCATaGCATTCTTGGAAAACATCT | + |
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Preference number: 4 (lower is better) Translates to: SILKHLVSVCSFRVQVAARTGSS*HSWKTS Trigger: AGATGTTTTCCAAGAATGTCATGATGATCCAGTCCT...GGCAGCTACCTGCACTCTAAAACTGCAAACAGAAACCAGGTGTTTTAAGATTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| 3UTR CAA 72 bp | CATTTACTTCTGTCAAAGGACAAGCAGGGCTTTCACTaGGCCCAACTAATCTTATTTTGTCTCTATTACAAT | + |
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Preference number: 4 (lower is better) Translates to: HLLLSKDKQGFH*AQLILFCLYYN Trigger: ATTGTAATAGAGACAAAATAAGATTAGTTGGGCCAAGTGAAAGCCCTGCTTGTCCTTTGACAGAAGTAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS CCA 90 bp | AGCAGCCGCAGCCGTCCCGGACCAACCCGACTCCCGGGGCGCACTTaGGTGCCTCCAGAGGGCAGTGGCAGGCGGCGGGGCAGGTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: SSRSRPGPTRLPGRT*VPPEGSGRRRGRWR Trigger: TCTCCACCTGCCCCGCCGCCTGCCACTGCCCTCTGGAGGCACCCAAGTGCGCCCCGGGAGTCGGGTTGGTCCGGGACGGCTGCGGCTGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS-3UTR CAA 90 bp | GCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTGAGCTGGCGCCGAAATaGCATTCCAACCCCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: AFSNCGCAAVRPHQPLGSELAPK*HSNPLV Trigger: CACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCTC...ACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS GCA 90 bp | CTTCGCATCGGAACCGCATCTTCACAGTTCTGGTCTGCAGAGGTGTaGAGCACCGGCCATCTACGCAGGAGCCGCAGTATTTGGGCCGGT | + |
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Preference number: 5 (lower is better) Translates to: LRIGTASSQFWSAEV*STGHLRRSRSIWAG Trigger: ACCGGCCCAAATACTGCGGCTCCTGCGTAGATGGCCGGTGCTGCACACCTCTGCAGACCAGAACTGTGAAGATGCGGTTCCGATGCGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS CCA 90 bp | ACCAGCCGGGGGTTGGGACAGCCCAGATTGGGGAGAGACAGTTCTTaGGGACACAGAGGAATGCAGCCCACGGCGCCATCAATACATGTG | + |
|
Preference number: 5 (lower is better) Translates to: TSRGLGQPRLGRDSS*GHRGMQPTAPSIHV Trigger: CACATGTATTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTGTCTCTCCCCAATCTGGGCTGTCCCAACCCCCGGCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 90 bp | GAGCTCTGCAGATCCCTTTCAGAGCGGTGGAGCTGGCGCCGAAATTaGATTCCAACCCCTTGGTGTGGTCGCAGGGCTGAGTTTTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: ELCRSLSERWSWRRN*IPTPWCGRRAEFCC Trigger: GCAGCAAAACTCAGCCCTGCGACCACACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCTCCACCGCTCTGAAAGGGATCTGCAGAGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 90 bp | TGCCTTCTGACTGAGCTCTGCAGATCCCTTTCAGAGCGGTGGAGCTaGCGCCGAAATTGCATTCCAACCCCTTGGTGTGGTCGCAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: CLLTELCRSLSERWS*RRNCIPTPWCGRRA Trigger: AGCCCTGCGACCACACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCTCCACCGCTCTGAAAGGGATCTGCAGAGCTCAGTCAGAAGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | AACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCATTCTCCAACTGAGGCGGCACTCTGGGTaGTCATTGGTAACTCGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: NCGCAAVRPHQPLGILQLRRHSG*SLVTRV Trigger: CACACGAGTTACCAATGACAACCCAGAGTGCCGCCT...CAGTTGGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | TCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCATTCTCCTTGGGCCGGTATTTCTaGACACTGGAGCATCCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: SPTAAALLSVHISPLAFSLGRYF*TLEHPA Trigger: TGCAGGATGCTCCAGTGTCAAGAAATACCGGCCCAA...GGAGAATGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | CAGTACTATGAAGCGAAGTCTTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACTGGGCGTGCAGAGGGTaGAAAAGAACTCGCGGTTCG | + |
|
Preference number: 5 (lower is better) Translates to: QYYEAKSSPTAAALLSVHWACRG*KRTRGS Trigger: CGAACCGCGAGTTCTTTTCAACCCTCTGCACGCCCA...GTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAAGACTTCGCTTCATAGTACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | GCATTCTCCAACTGCGGCTGCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTCACTCTGGGTTGTCATaGGTAACTCGTGTGGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: AFSNCGCAAVRPHQPLGSHSGLS*VTRVEM Trigger: CATCTCCACACGAGTTACCAATGACAACCCAGAGTG...ACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGCAGCCGCAGTTGGAGAATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 90 bp | ATCTCTCCATCTTCGCATCGGAACCGCATCTTCACAGTTCTGGTCTaGAGAGGTGTGCAGCACCGGCCATCTACGCAGGAGCCGCAGTAT | + |
|
Preference number: 5 (lower is better) Translates to: ISPSSHRNRIFTVLV*RGVQHRPSTQEPQY Trigger: ATACTGCGGCTCCTGCGTAGATGGCCGGTGCTGCACACCTCTGCAGACCAGAACTGTGAAGATGCGGTTCCGATGCGAAGATGGAGAGAT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 90 bp | AAAACATCTCTCCATCTTCGCATCGGAACCGCATCTTCACAGTTCTaGTCTGCAGAGGTGTGCAGCACCGGCCATCTACGCAGGAGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: KTSLHLRIGTASSQF*SAEVCSTGHLRRSR Trigger: GCGGCTCCTGCGTAGATGGCCGGTGCTGCACACCTCTGCAGACCAGAACTGTGAAGATGCGGTTCCGATGCGAAGATGGAGAGATGTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | TCCTCCGCCCACCCACGTCTCCATGATGCTTGCGCTTCTCCTCTGTCCAGCCCAGGGGATTTCTTGGTCTaGCTGCATTTCTTGCCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: SSAHPRLHDACASPLSSPGDFLV*LHFLPF Trigger: AAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCC...TGGGCTGGACAGAGGAGAAGCGCAAGCATCATGGAGACGTGGGTGGGCGGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 90 bp | GAGTCCTTAATGCTGTCTTCATCACAAACCCACTCTTCACAGCACTaGCCGCTGACTTTCACCAGCCGGGGGTTGGGACAGCCCAGATTG | + |
|
Preference number: 5 (lower is better) Translates to: ESLMLSSSQTHSSQH*PLTFTSRGLGQPRL Trigger: CAATCTGGGCTGTCCCAACCCCCGGCTGGTGAAAGTCAGCGGGCAGTGCTGTGAAGAGTGGGTTTGTGATGAAGACAGCATTAAGGACTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS TCA 90 bp | CTGGCGCCGAAATTGCATTCCAACCCCTTGGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCGTTGAGTTGTTTAGCGCAGACCTTA | + |
|
Preference number: 5 (lower is better) Translates to: LAPKLHSNPLVWSQG*VLLQSSLSCLAQTL Trigger: TAAGGTCTGCGCTAAACAACTCAACGAGGACTGCAGCAAAACTCAGCCCTGCGACCACACCAAGGGGTTGGAATGCAATTTCGGCGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 90 bp | GACAGCCCAGATTGGGGAGAGACAGTTCTTGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAATACATGTGCACTGGTGTTTACAGT | + |
|
Preference number: 5 (lower is better) Translates to: DSPDWGETVLGDTEE*SPRRHQYMCTGVYS Trigger: ACTGTAAACACCAGTGCACATGTATTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTGTCTCTCCCCAATCTGGGCTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTTTGGGACAGCCCAGATaGGGGAGAGACAGTTCTTGG | + |
|
Preference number: 5 (lower is better) Translates to: ALLSVHISPLAVLKYPNALGQPR*GRDSSW Trigger: CCAAGAACTGTCTCTCCCCAATCTGGGCTGTCCCAA...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | TTTCATTTACTTCTGTCAAAGGACAAGCAGGGCTTTCACTTGGCCCAACTAATCTTCACCAGCCGGGGGTaGGGACAGCCCAGATTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: FHLLLSKDKQGFHLAQLIFTSRG*GQPRLG Trigger: CCCCAATCTGGGCTGTCCCAACCCCCGGCTGGTGAA...GATTAGTTGGGCCAAGTGAAAGCCCTGCTTGTCCTTTGACAGAAGTAAATGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | TCTGTTTGCAGTTTTAGAGTGCAGGTAGCTGCCCCAAGGACACTCACAGAGTGTTTGCTGCAGTCCTCGTaGAGTTGTTTAGCGCAGACC | + |
|
Preference number: 5 (lower is better) Translates to: SVCSFRVQVAAPRTLTECLLQSS*SCLAQT Trigger: GGTCTGCGCTAAACAACTCAACGAGGACTGCAGCAA...ACACTCTGTGAGTGTCCTTGGGGCAGCTACCTGCACTCTAAAACTGCAAACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | AGAAAACAGAACGTCATCCGTAAACATGCTCCAATATGGAGCAATAATGCCCGCCCAGTTCCGCAGCTCTaGGAGCACTGGGACCAAGAC | + |
|
Preference number: 5 (lower is better) Translates to: RKQNVIRKHAPIWSNNARPVPQL*EHWDQD Trigger: GTCTTGGTCCCAGTGCTCCAAGAGCTGCGGAACTGG...GCGGGCATTATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | CTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTACTGCAGTCCTCGTTGAGTaGTTTAGCGCAGACCTTACA | + |
|
Preference number: 5 (lower is better) Translates to: LLSVHISPLAVLKYPNATAVLVE*FSADLT Trigger: TGTAAGGTCTGCGCTAAACAACTCAACGAGGACTGC...AGTAGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTAACTTGTGGATGTCATaGAATAGGCTGTACAGTCGG | + |
|
Preference number: 5 (lower is better) Translates to: ALLSVHISPLAVLKYPNANLWMS*NRLYSR Trigger: CCGACTGTACAGCCTATTCAATGACATCCACAAGTT...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 90 bp | GGAGCCGCAGTATTTGGGCCGGTATTTCTTGACACTGGAGCATCCTaGATAAGTAAATCTGACTGGTTCTGGGGATTTCTTGGTCTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: GAAVFGPVFLDTGAS*ISKSDWFWGFLGLA Trigger: AGCAAGACCAAGAAATCCCCAGAACCAGTCAGATTTACTTATGCAGGATGCTCCAGTGTCAAGAAATACCGGCCCAAATACTGCGGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 90 bp | GGTGTTTACAGTTGGGCTGGAAGCTTTCCCCGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTCTGCCTTCTGACTGAGCTCTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: GVYSWAGSFPRFGRF*SYIHRVCLLTELCR Trigger: TCTGCAGAGCTCAGTCAGAAGGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACGGGGAAAGCTTCCAGCCCAACTGTAAACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | GCGCTGCTGTCCGTCCACATCAGCCCCTTGGCAGTTTTGAAATACCCTAATGCTGAAGCTTTCCCCGTTTaGGTAGATTCTGGAGTTATA | + |
|
Preference number: 5 (lower is better) Translates to: ALLSVHISPLAVLKYPNAEAFPV*VDSGVI Trigger: TATAACTCCAGAATCTACCAAAACGGGGAAAGCTTC...AGCATTAGGGTATTTCAAAACTGCCAAGGGGCTGATGTGGACGGACAGCAGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | AGAAAACAGAACGTCATCCGTAAACATGCTCCAATATGGAGCAATAATGCCCGCGCTGCTGTACACTGGTaGTCCACAAGGACGCACTTC | + |
|
Preference number: 5 (lower is better) Translates to: RKQNVIRKHAPIWSNNARAAVHW*STRTHF Trigger: GAAGTGCGTCCTTGTGGACAACCAGTGTACAGCAGC...GCGGGCATTATTGCTCCATATTGGAGCATGTTTACGGATGACGTTCTGTTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS TCA 90 bp | TGGGATGCGGGCAGTTGTAGTTACATTTGCAGGACTGGATCATCATaGCATTCTTGGAAAACATCTCTCCATCTTCGCATCGGAACCGCA | + |
|
Preference number: 5 (lower is better) Translates to: WDAGSCSYICRTGSS*HSWKTSLHLRIGTA Trigger: TGCGGTTCCGATGCGAAGATGGAGAGATGTTTTCCAAGAATGTCATGATGATCCAGTCCTGCAAATGTAACTACAACTGCCCGCATCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 90 bp | GAACTCGCGGTTCGGTGCCAAAGACAGGAAGCCTCTTCAGTGAGCTaGCTTTTCCAATTGCGATTAACTCATTGTTTCTCGTTAACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: ELAVRCQRQEASSVS*LFQLRLTHCFSLTP Trigger: TGGAGTTAACGAGAAACAATGAGTTAATCGCAATTGGAAAAGGCAGCTCACTGAAGAGGCTTCCTGTCTTTGGCACCGAACCGCGAGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS-3UTR CAA 90 bp | AAACATTCAATCTTAAAACACCTGGTTTCTGTTTGCAGTTTTAGAGTGCAGGTACAGGAGCCGCAGTATTaGGGCCGGTATTTCTTGACA | + |
|
Preference number: 5 (lower is better) Translates to: KHSILKHLVSVCSFRVQVQEPQY*GRYFLT Trigger: TGTCAAGAAATACCGGCCCAAATACTGCGGCTCCTG...TACCTGCACTCTAAAACTGCAAACAGAAACCAGGTGTTTTAAGATTGAATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 90 bp | CAGCAGCCGCAGCCGTCCCGGACCAACCCGACTCCCGGGGCGCACTaGGGTGCCTCCAGAGGGCAGTGGCAGGCGGCGGGGCAGGTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: QQPQPSRTNPTPGAH*GASRGQWQAAGQVE Trigger: CTCCACCTGCCCCGCCGCCTGCCACTGCCCTCTGGAGGCACCCAAGTGCGCCCCGGGAGTCGGGTTGGTCCGGGACGGCTGCGGCTGCTG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 72 bp | AGCCGTCCCGGACCAACCCGACTCCCGGGGCGCACTTaGGTGCCTCCAGAGGGCAGTGGCAGGCGGCGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: SRPGPTRLPGRT*VPPEGSGRRRG Trigger: GCCCCGCCGCCTGCCACTGCCCTCTGGAGGCACCCAAGTGCGCCCCGGGAGTCGGGTTGGTCCGGGACGGCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 72 bp | CAGCCGTCCCGGACCAACCCGACTCCCGGGGCGCACTaGGGTGCCTCCAGAGGGCAGTGGCAGGCGGCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: QPSRTNPTPGAH*GASRGQWQAAG Trigger: CCCCGCCGCCTGCCACTGCCCTCTGGAGGCACCCAAGTGCGCCCCGGGAGTCGGGTTGGTCCGGGACGGCTG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS TCA 72 bp | CCGCAGCTCTTGGAGCACTGGGACCAAGACGTGGTCTaGACGATGCATTTCTGGCCATGGGCGTGCAGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: PQLLEHWDQDVV*TMHFWPWACRG Trigger: CCCTCTGCACGCCCATGGCCAGAAATGCATCGTTCAGACCACGTCTTGGTCCCAGTGCTCCAAGAGCTGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 72 bp | GGGTTGGGACAGCCCAGATTGGGGAGAGACAGTTCTTaGGGACACAGAGGAATGCAGCCCACGGCGCCATCA | + |
|
Preference number: 6 (lower is better) Translates to: GLGQPRLGRDSS*GHRGMQPTAPS Trigger: TGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTGTCTCTCCCCAATCTGGGCTGTCCCAACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 72 bp | TCACAGCACTGCCCGCTGACTTTCACCAGCCGGGGGTaGGGACAGCCCAGATTGGGGAGAGACAGTTCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: SQHCPLTFTSRG*GQPRLGRDSSW Trigger: CCAAGAACTGTCTCTCCCCAATCTGGGCTGTCCCAACCCCCGGCTGGTGAAAGTCAGCGGGCAGTGCTGTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 72 bp | AGATCCCTTTCAGAGCGGTGGAGCTGGCGCCGAAATTaGATTCCAACCCCTTGGTGTGGTCGCAGGGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: RSLSERWSWRRN*IPTPWCGRRAE Trigger: CTCAGCCCTGCGACCACACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCTCCACCGCTCTGAAAGGGATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 72 bp | CGGTGGAGCTGGCGCCGAAATTGCATTCCAACCCCTTaGTGTGGTCGCAGGGCTGAGTTTTGCTGCAGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RWSWRRNCIPTP*CGRRAEFCCSP Trigger: AGGACTGCAGCAAAACTCAGCCCTGCGACCACACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCTCCACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 90 bp | CTTGGTGTGGTCGCAGGGCTGAGTTTTGCTGCAGTCCTCGTTGAGTaGTTTAGCGCAGACCTTACAGCAGCCGCAGCCGTCCCGGACCAA | + |
|
Preference number: 6 (lower is better) Translates to: LGVVAGLSFAAVLVE*FSADLTAAAAVPDQ Trigger: TTGGTCCGGGACGGCTGCGGCTGCTGTAAGGTCTGCGCTAAACAACTCAACGAGGACTGCAGCAAAACTCAGCCCTGCGACCACACCAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS TCA 72 bp | CTTCATCACAAACCCACTCTTCACAGCACTGCCCGCTaGCTTTCACCAGCCGGGGGTTGGGACAGCCCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: LHHKPTLHSTAR*LSPAGGWDSPD Trigger: ATCTGGGCTGTCCCAACCCCCGGCTGGTGAAAGTCAGCGGGCAGTGCTGTGAAGAGTGGGTTTGTGATGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 72 bp | TCTTCGCATCGGAACCGCATCTTCACAGTTCTGGTCTaGAGAGGTGTGCAGCACCGGCCATCTACGCAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SSHRNRIFTVLV*RGVQHRPSTQE Trigger: CTCCTGCGTAGATGGCCGGTGCTGCACACCTCTGCAGACCAGAACTGTGAAGATGCGGTTCCGATGCGAAGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 72 bp | CTCCATCTTCGCATCGGAACCGCATCTTCACAGTTCTaGTCTGCAGAGGTGTGCAGCACCGGCCATCTACGC | + |
|
Preference number: 6 (lower is better) Translates to: LHLRIGTASSQF*SAEVCSTGHLR Trigger: GCGTAGATGGCCGGTGCTGCACACCTCTGCAGACCAGAACTGTGAAGATGCGGTTCCGATGCGAAGATGGAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 72 bp | GTCGCAGGGCTGAGTTTTGCTGCAGTCCTCGTTGAGTaGTTTAGCGCAGACCTTACAGCAGCCGCAGCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: VAGLSFAAVLVE*FSADLTAAAAV Trigger: GACGGCTGCGGCTGCTGTAAGGTCTGCGCTAAACAACTCAACGAGGACTGCAGCAAAACTCAGCCCTGCGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 72 bp | GTGCAGCACCGGCCATCTACGCAGGAGCCGCAGTATTaGGGCCGGTATTTCTTGACACTGGAGCATCCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: VQHRPSTQEPQY*GRYFLTLEHPA Trigger: TGCAGGATGCTCCAGTGTCAAGAAATACCGGCCCAAATACTGCGGCTCCTGCGTAGATGGCCGGTGCTGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 72 bp | ATGCTGTCTTCATCACAAACCCACTCTTCACAGCACTaGCCGCTGACTTTCACCAGCCGGGGGTTGGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: MLSSSQTHSSQH*PLTFTSRGLGQ Trigger: CTGTCCCAACCCCCGGCTGGTGAAAGTCAGCGGGCAGTGCTGTGAAGAGTGGGTTTGTGATGAAGACAGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 72 bp | ACTGAGCTCTGCAGATCCCTTTCAGAGCGGTGGAGCTaGCGCCGAAATTGCATTCCAACCCCTTGGTGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: TELCRSLSERWS*RRNCIPTPWCG Trigger: ACCACACCAAGGGGTTGGAATGCAATTTCGGCGCCAGCTCCACCGCTCTGAAAGGGATCTGCAGAGCTCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS GCA 72 bp | GATTGGGGAGAGACAGTTCTTGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAATACATGTGCACTGGT | + |
|
Preference number: 6 (lower is better) Translates to: DWGETVLGDTEE*SPRRHQYMCTG Trigger: ACCAGTGCACATGTATTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTGTCTCTCCCCAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS TCA 72 bp | GAACGATGCATTTCTGGCCATGGGCGTGCAGAGGGTTaGAAAGAACTCGCGGTTCGGTGCCAAAGACAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: ERCISGHGRAEG*KELAVRCQRQE Trigger: TTCCTGTCTTTGGCACCGAACCGCGAGTTCTTTTCAACCCTCTGCACGCCCATGGCCAGAAATGCATCGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 90 bp | GGAAGCCTCTTCAGTGAGCTGCCTTTTCCAATTGCGATTAACTCATaGTTTCTCGTTAACTCCACCTCCGAGGCATCGAGTCCGAGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GSLFSELPFPIAINS*FLVNSTSEASSPRR Trigger: CCTCCTCGGACTCGATGCCTCGGAGGTGGAGTTAACGAGAAACAATGAGTTAATCGCAATTGGAAAAGGCAGCTCACTGAAGAGGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS TCA 72 bp | AAATTGCATTCCAACCCCTTGGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCGTTGAGTTGTTTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: KLHSNPLVWSQG*VLLQSSLSCLA Trigger: CGCTAAACAACTCAACGAGGACTGCAGCAAAACTCAGCCCTGCGACCACACCAAGGGGTTGGAATGCAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CAA 90 bp | CGGTGCCAAAGACAGGAAGCCTCTTCAGTGAGCTGCCTTTTCCAATaGCGATTAACTCATTGTTTCTCGTTAACTCCACCTCCGAGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: RCQRQEASSVSCLFQ*RLTHCFSLTPPPRH Trigger: ATGCCTCGGAGGTGGAGTTAACGAGAAACAATGAGTTAATCGCAATTGGAAAAGGCAGCTCACTGAAGAGGCTTCCTGTCTTTGGCACCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
||
| CDS CCA 72 bp | AGTTGGGCTGGAAGCTTTCCCCGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTCTGCCTTCTGACTGAG | + |
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Preference number: 6 (lower is better) Translates to: SWAGSFPRFGRF*SYIHRVCLLTE Trigger: CTCAGTCAGAAGGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACGGGGAAAGCTTCCAGCCCAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS CAA 72 bp | CTGGTGTTTACAGTTGGGCTGGAAGCTTTCCCCGTTTaGGTAGATTCTGGAGTTATATTCACAGGGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LVFTVGLEAFPV*VDSGVIFTGSA Trigger: GGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACGGGGAAAGCTTCCAGCCCAACTGTAAACACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS GCA 72 bp | CGTTTTGGTAGATTCTGGAGTTATATTCACAGGGTCTaGCTTCTGACTGAGCTCTGCAGATCCCTTTCAGAG | + |
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Preference number: 6 (lower is better) Translates to: RFGRFWSYIHRV*LLTELCRSLSE Trigger: CTCTGAAAGGGATCTGCAGAGCTCAGTCAGAAGGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS GCA 72 bp | GTTCGGTGCCAAAGACAGGAAGCCTCTTCAGTGAGCTaGCTTTTCCAATTGCGATTAACTCATTGTTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: VRCQRQEASSVS*LFQLRLTHCFS Trigger: CGAGAAACAATGAGTTAATCGCAATTGGAAAAGGCAGCTCACTGAAGAGGCTTCCTGTCTTTGGCACCGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS CCA 72 bp | ACTGGAGCATCCTGCATAAGTAAATCTGACTGGTTCTaGGGATTTCTTGGTCTTGCTGCATTTCTTGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: TGASCISKSDWF*GFLGLAAFLAL Trigger: AAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCCAGAACCAGTCAGATTTACTTATGCAGGATGCTCCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS CAA 72 bp | TTCAGTGAGCTGCCTTTTCCAATTGCGATTAACTCATaGTTTCTCGTTAACTCCACCTCCGAGGCATCGAGT | + |
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Preference number: 6 (lower is better) Translates to: FSELPFPIAINS*FLVNSTSEASS Trigger: ACTCGATGCCTCGGAGGTGGAGTTAACGAGAAACAATGAGTTAATCGCAATTGGAAAAGGCAGCTCACTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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| CDS GCA 72 bp | GTATTTGGGCCGGTATTTCTTGACACTGGAGCATCCTaGATAAGTAAATCTGACTGGTTCTGGGGATTTCTT | + |
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Preference number: 6 (lower is better) Translates to: VFGPVFLDTGAS*ISKSDWFWGFL Trigger: AAGAAATCCCCAGAACCAGTCAGATTTACTTATGCAGGATGCTCCAGTGTCAAGAAATACCGGCCCAAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029846.5 |
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