Pregenerated sensors for CCL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019122Ensembl transcript IDs: ENSMUST00000019266.6
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGACAGACCTGTGGCTGCATAGATGCACTTTATTAGTGGCTTACTaGTGGAGGGGTGGTGGGAAAATCAGCTGGGTCCTTACAAACACA | + |
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Preference number: 1 (lower is better) Translates to: QTDLWLHRCTLLVAY*WRGGGKISWVLTNT Trigger: TGTGTTTGTAAGGACCCAGCTGATTTTCCCACCACCCCTCCATCAGTAAGCCACTAATAAAGTGCATCTATGCAGCCACAGGTCTGTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 90 bp | GCTTTCTCCCTAACAGCCCAATTTCAGCCCATAGTCCTAGGAAACTaGAGCAAAAGAGGCAGACAGACCTGTGGCTGCATAGATGCACTT | + |
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Preference number: 1 (lower is better) Translates to: AFSLTAQFQPIVLGN*SKRGRQTCGCIDAL Trigger: AAGTGCATCTATGCAGCCACAGGTCTGTCTGCCTCTTTTGCTTCAGTTTCCTAGGACTATGGGCTGAAATTGGGCTGTTAGGGAGAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CCA 90 bp | AAAGTCCCACAGACCACTCTCACAGTTTATCCACTTAAAATCCGCTaGGAAACCGAGTGGAAGAACTTGAGTGATTCTGAGGCAGTTAGG | + |
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Preference number: 1 (lower is better) Translates to: KVPQTTLTVYPLKIR*ETEWKNLSDSEAVR Trigger: CCTAACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTTAAGTGGATAAACTGTGAGAGTGGTCTGTGGGACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 90 bp | CCAGACCTTGCCCATTTATCTCAATCAAATATTATGTGTAGTCATTaGGGTCAGCTTCAGACCTTCCAGGCATCTGAGTTTTCAGATGAC | + |
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Preference number: 1 (lower is better) Translates to: PDLAHLSQSNIMCSH*GQLQTFQASEFSDD Trigger: GTCATCTGAAAACTCAGATGCCTGGAAGGTCTGAAGCTGACCTCAATGACTACACATAATATTTGATTGAGATAAATGGGCAAGGTCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 90 bp | GGGACATGGATACTTTCTCTCAGTACTTCTTTTCAGCTGAGTACTTaGAGTTTTTGCTACAGCAGTAAGGCAAGAGAAGGAGACAAGATG | + |
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Preference number: 1 (lower is better) Translates to: GTWILSLSTSFQLST*SFCYSSKAREGDKM Trigger: CATCTTGTCTCCTTCTCTTGCCTTACTGCTGTAGCAAAAACTTCAAGTACTCAGCTGAAAAGAAGTACTGAGAGAAAGTATCCATGTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 90 bp | TCAGGAAAGGGACATGGATACTTTCTCTCAGTACTTCTTTTCAGCTaGGTACTTGAAGTTTTTGCTACAGCAGTAAGGCAAGAGAAGGAG | + |
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Preference number: 1 (lower is better) Translates to: SGKGHGYFLSVLLFS*VLEVFATAVRQEKE Trigger: CTCCTTCTCTTGCCTTACTGCTGTAGCAAAAACTTCAAGTACTCAGCTGAAAAGAAGTACTGAGAGAAAGTATCCATGTCCCTTTCCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR GCA 90 bp | TTGGCAGATGATATCATTCTTTCTCTCTCTATAAAAGGCCCTAAATaGTACACTAGAAAACTCGTAGAGCTGATAAACACTTTCAGCCAA | + |
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Preference number: 1 (lower is better) Translates to: LADDIILSLSIKGPK*YTRKLVELINTFSQ Trigger: TTGGCTGAAAGTGTTTATCAGCTCTACGAGTTTTCTAGTGTAGCATTTAGGGCCTTTTATAGAGAGAGAAAGAATGATATCATCTGCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGCGCTGGGAAACCGAGTaGAAGAACTTGAGTGATTCT | + |
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Preference number: 2 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWRWETE*KNLSDS Trigger: AGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCG...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGAGAAGACCCAGAAGATaGAAAGACCACCTATGCTCA | + |
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Preference number: 2 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWRRPRR*KDHLCS Trigger: TGAGCATAGGTGGTCTTTCCATCTTCTGGGTCTTCT...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR GCA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGCATCTCTCCAGACCTTaGCCATTTATCTCAATCAAA | + |
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Preference number: 2 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWHLSRP*PFISIK Trigger: TTTGATTGAGATAAATGGGCAAGGTCTGGAGAGATG...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CAA 90 bp | ACAGTTTATCCACTTAAAATCCGCTGGGAAACCGAGTGGAAGAACTaGAGTGATTCTGAGGCAGTTAGGATGGCTGTAGCTCAAGATGGT | + |
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Preference number: 2 (lower is better) Translates to: TVYPLKIRWETEWKN*SDSEAVRMAVAQDG Trigger: ACCATCTTGAGCTACAGCCATCCTAACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTTAAGTGGATAAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | TATCTCAATCAAATATTATGTGTAGTCATTGAGGTCAGCTTCAGACCTTCCAGGTCAGATGACTGGGGTTaGCACAGACAAGTTTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: YLNQILCVVIEVSFRPSRSDDWG*HRQVSP Trigger: AGGGGAAACTTGTCTGTGCCAACCCCAGTCATCTGA...CCTGGAAGGTCTGAAGCTGACCTCAATGACTACACATAATATTTGATTGAGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | GGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTGAAAACTTACTGATGGAGGGGTaGTGGGAAAATCAGCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: GLNSRKQKVDSENACGENLLMEG*WENQLG Trigger: ACCCAGCTGATTTTCCCACCACCCCTCCATCAGTAA...GTTTTCACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | ATCATAAAGAGCTTCATTCCAGACTTGCAGGGATGTTCAACATACATAAATCAGGAGCTGCCATCTAAGTaGGAATTGAACCCAGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: IIKSFIPDLQGCSTYINQELPSK*ELNPGP Trigger: AGGACCTGGGTTCAATTCCCACTTAGATGGCAGCTC...CTGATTTATGTATGTTGAACATCCCTGCAAGTCTGGAATGAAGCTCTTTATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | ATAAATGGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTGGCGGATTTCTGAGTTaGAGGCCAACCTGGTCTACA | + |
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Preference number: 2 (lower is better) Translates to: INGLNSRKQKVDSENACGGGFLS*RPTWST Trigger: TGTAGACCAGGTTGGCCTCCAACTCAGAAATCCGCC...ACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCCATTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR TCA 90 bp | ATAGAATTGAGGATCTTATCGAACAGGGAGAACTTCCAAAGATTTGTAGATCACTTATTAGTGGCTTACTaGTGGAGGGGTGGTGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: IELRILSNRENFQRFVDHLLVAY*WRGGGK Trigger: TTTCCCACCACCCCTCCATCAGTAAGCCACTAATAA...GTGATCTACAAATCTTTGGAAGTTCTCCCTGTTCGATAAGATCCTCAATTCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | GGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTGAAAACGAGTTTTCAGATGACTaGGGTTGGCACAGACAAGTT | + |
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Preference number: 2 (lower is better) Translates to: GLNSRKQKVDSENACGENEFSDD*GWHRQV Trigger: AACTTGTCTGTGCCAACCCCAGTCATCTGAAAACTC...GTTTTCACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | ATAGAATTGAGGATCTTATCGAACAGGGAGAACTTCCAAAGATTTGTAGATCACAGGCAGACAGACCTGTaGCTGCATAGATGCACTTTA | + |
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Preference number: 2 (lower is better) Translates to: IELRILSNRENFQRFVDHRQTDL*LHRCTL Trigger: TAAAGTGCATCTATGCAGCCACAGGTCTGTCTGCCT...GTGATCTACAAATCTTTGGAAGTTCTCCCTGTTCGATAAGATCCTCAATTCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR TCA 90 bp | ATAGAATTGAGGATCTTATCGAACAGGGAGAACTTCCAAAGATTTGTAGATCACATAGTCCTAGGAAACTaGAGCAAAAGAGGCAGACAG | + |
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Preference number: 2 (lower is better) Translates to: IELRILSNRENFQRFVDHIVLGN*SKRGRQ Trigger: CTGTCTGCCTCTTTTGCTTCAGTTTCCTAGGACTAT...GTGATCTACAAATCTTTGGAAGTTCTCCCTGTTCGATAAGATCCTCAATTCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | ATAAATGGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTTTAGAGCCACTTAGGTaGTCACTGGGGAAGACCAAA | + |
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Preference number: 2 (lower is better) Translates to: INGLNSRKQKVDSENACGLEPLR*SLGKTK Trigger: TTTGGTCTTCCCCAGTGACCACCTAAGTGGCTCTAA...ACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCCATTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | GGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTGAAAACGAGAAGGAGACAAGATaGATTCAAACAGGAAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: GLNSRKQKVDSENACGENEKETR*IQTGKE Trigger: TTCCTTTCCTGTTTGAATCCATCTTGTCTCCTTCTC...GTTTTCACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR TCA 90 bp | ATCATAAAGAGCTTCATTCCAGACTTGCAGGGATGTTCAACATACATAAATCAGTTCAATAAAAGCGAGTaGGATGCTTTCTCCCTAACA | + |
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Preference number: 2 (lower is better) Translates to: IIKSFIPDLQGCSTYINQFNKSE*DAFSLT Trigger: TGTTAGGGAGAAAGCATCTCACTCGCTTTTATTGAA...CTGATTTATGTATGTTGAACATCCCTGCAAGTCTGGAATGAAGCTCTTTATGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | TTTCAATACAATAAAGGAAATATACAACAAGCCTGTAGCCAACGGAATGCTAACCTAGTTGAATGTACCTaGGTTGCCATAAGTGACTAT | + |
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Preference number: 2 (lower is better) Translates to: FQYNKGNIQQACSQRNANLVECT*VAISDY Trigger: ATAGTCACTTATGGCAACCCAGGTACATTCAACTAG...GTTAGCATTCCGTTGGCTACAGGCTTGTTGTATATTTCCTTTATTGTATTGAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR GCA 90 bp | ATAAATGGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTTGGAAAGACCACCTATaGTCATGGTCTAGTTTAATA | + |
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Preference number: 2 (lower is better) Translates to: INGLNSRKQKVDSENACGWKDHL*SWSSLI Trigger: TATTAAACTAGACCATGAGCATAGGTGGTCTTTCCA...ACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCCATTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CCA 90 bp | TTTCAATACAATAAAGGAAATATACAACAAGCCTGTAGCCAACGGAATGCTAACACACAGACATACTACTaGGCTAAGGCAGAATTTATT | + |
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Preference number: 2 (lower is better) Translates to: FQYNKGNIQQACSQRNANTQTYY*AKAEFI Trigger: AATAAATTCTGCCTTAGCCCAGTAGTATGTCTGTGT...GTTAGCATTCCGTTGGCTACAGGCTTGTTGTATATTTCCTTTATTGTATTGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | TCCACCCCACGCTCTCTTCCTGCTAACAGTGAAACCTaGGCAGCCAGGTTTCAGGCTAGGGGGAGAGGTTAC | + |
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Preference number: 3 (lower is better) Translates to: STPRSLPANSET*AARFQARGRGY Trigger: GTAACCTCTCCCCCTAGCCTGAAACCTGGCTGCTCAGGTTTCACTGTTAGCAGGAAGAGAGCGTGGGGTGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CAA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGGGAATTATAGATAGTTaGAGCTGCCATCTAAGTGGG | + |
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Preference number: 3 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWGIIDS*SCHLSG Trigger: CCCACTTAGATGGCAGCTCAAACTATCTATAATTCC...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CAA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGATACTGAGGAAGAAATaGGGAGGAAAATCCCACTCT | + |
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Preference number: 3 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWILRKK*GGKSHS Trigger: AGAGTGGGATTTTCCTCCCAATTTCTTCCTCAGTAT...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | CTGTGGCTGCATAGATGCACTTTATTAGTGGCTTACTaGTGGAGGGGTGGTGGGAAAATCAGCTGGGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: LWLHRCTLLVAY*WRGGGKISWVL Trigger: AAGGACCCAGCTGATTTTCCCACCACCCCTCCATCAGTAAGCCACTAATAAAGTGCATCTATGCAGCCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CAA 90 bp | AAAATCCGCTGGGAAACCGAGTGGAAGAACTTGAGTGATTCTGAGGCAGTTAGGCCATCTAAGTGGGAATaGAACCCAGGTCCTCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: KIRWETEWKNLSDSEAVRPSKWE*NPGPLE Trigger: TTCCAGAGGACCTGGGTTCAATTCCCACTTAGATGG...CCTAACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | GATGACTGGGGTTGGCACAGACAAGTTTCCCCTCTGTaGCAAAGCCAGATATGCCACTTTAAAGTGGAACAG | + |
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Preference number: 3 (lower is better) Translates to: DDWGWHRQVSPL*QSQICHFKVEQ Trigger: CTGTTCCACTTTAAAGTGGCATATCTGGCTTTGTCACAGAGGGGAAACTTGTCTGTGCCAACCCCAGTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | CTAACAGCCCAATTTCAGCCCATAGTCCTAGGAAACTaGAGCAAAAGAGGCAGACAGACCTGTGGCTGCATA | + |
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Preference number: 3 (lower is better) Translates to: LTAQFQPIVLGN*SKRGRQTCGCI Trigger: TATGCAGCCACAGGTCTGTCTGCCTCTTTTGCTTCAGTTTCCTAGGACTATGGGCTGAAATTGGGCTGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | ATTATAGATAGTTTGAGCTGCCATCTAAGTGGGAATTaGACCCAGGTCCTCTGGAAGAGCAGCAGGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: IIDSLSCHLSGN*TQVLWKSSRCS Trigger: AGAGCACCTGCTGCTCTTCCAGAGGACCTGGGTTCAATTCCCACTTAGATGGCAGCTCAAACTATCTATAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CCA 72 bp | CAGACCACTCTCACAGTTTATCCACTTAAAATCCGCTaGGAAACCGAGTGGAAGAACTTGAGTGATTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: QTTLTVYPLKIR*ETEWKNLSDSE Trigger: CTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTTAAGTGGATAAACTGTGAGAGTGGTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | CTGTTTCTTTTCCACTGCAGATTCAATAAAAGCGAGTaGGATGCTTTCTCCCTAACAGCCCAATTTCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: LFLFHCRFNKSE*DAFSLTAQFQP Trigger: GGGCTGAAATTGGGCTGTTAGGGAGAAAGCATCTCACTCGCTTTTATTGAATCTGCAGTGGAAAAGAAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CCA 72 bp | ACAGTTTATCCACTTAAAATCCGCTGGGAAACCGAGTaGAAGAACTTGAGTGATTCTGAGGCAGTTAGGATG | + |
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Preference number: 3 (lower is better) Translates to: TVYPLKIRWETE*KNLSDSEAVRM Trigger: CATCCTAACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTTAAGTGGATAAACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CAA 90 bp | ATCATAAAGAGCTTCATTCCAGACTTGCAGGGATGTTCAACATACATAAATCAGACCGAGTGGAAGAACTaGAGTGATTCTGAGGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: IIKSFIPDLQGCSTYINQTEWKN*SDSEAV Trigger: AACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGT...CTGATTTATGTATGTTGAACATCCCTGCAAGTCTGGAATGAAGCTCTTTATGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | GCCCATTTATCTCAATCAAATATTATGTGTAGTCATTaGGGTCAGCTTCAGACCTTCCAGGCATCTGAGTTT | + |
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Preference number: 3 (lower is better) Translates to: AHLSQSNIMCSH*GQLQTFQASEF Trigger: AAACTCAGATGCCTGGAAGGTCTGAAGCTGACCTCAATGACTACACATAATATTTGATTGAGATAAATGGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | GGACATGGATACTTTCTCTCAGTACTTCTTTTCAGCTaGGTACTTGAAGTTTTTGCTACAGCAGTAAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: GHGYFLSVLLFS*VLEVFATAVRQ Trigger: TTGCCTTACTGCTGTAGCAAAAACTTCAAGTACTCAGCTGAAAAGAAGTACTGAGAGAAAGTATCCATGTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CCA 72 bp | CTGGAAGCATTTCTGCTAAAAATCAGGAAAGGGACATaGATACTTTCTCTCAGTACTTCTTTTCAGCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: LEAFLLKIRKGT*ILSLSTSFQLS Trigger: ACTCAGCTGAAAAGAAGTACTGAGAGAAAGTATCCATGTCCCTTTCCTGATTTTTAGCAGAAATGCTTCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | ATACTTTCTCTCAGTACTTCTTTTCAGCTGAGTACTTaGAGTTTTTGCTACAGCAGTAAGGCAAGAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: ILSLSTSFQLST*SFCYSSKAREG Trigger: TCCTTCTCTTGCCTTACTGCTGTAGCAAAAACTTCAAGTACTCAGCTGAAAAGAAGTACTGAGAGAAAGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR-3UTR CAA 90 bp | TTTCAATACAATAAAGGAAATATACAACAAGCCTGTAGCCAACGGAATGCTAACTTTTCAGCTGAGTACTaGAAGTTTTTGCTACAGCAG | + |
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Preference number: 3 (lower is better) Translates to: FQYNKGNIQQACSQRNANFSAEY*KFLLQQ Trigger: CTGCTGTAGCAAAAACTTCAAGTACTCAGCTGAAAA...GTTAGCATTCCGTTGGCTACAGGCTTGTTGTATATTTCCTTTATTGTATTGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR TCA 72 bp | GTGGTGAAAACCAACAGCTCTTCATTATTAAAGCCCTaGAGACAACAGAAATACAAGGAACGTATTTCAATA | + |
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Preference number: 3 (lower is better) Translates to: VVKTNSSSLLKP*RQQKYKERISI Trigger: TATTGAAATACGTTCCTTGTATTTCTGTTGTCTTCAGGGCTTTAATAATGAAGAGCTGTTGGTTTTCACCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR GCA 72 bp | GATATCATTCTTTCTCTCTCTATAAAAGGCCCTAAATaGTACACTAGAAAACTCGTAGAGCTGATAAACACT | + |
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Preference number: 3 (lower is better) Translates to: DIILSLSIKGPK*YTRKLVELINT Trigger: AGTGTTTATCAGCTCTACGAGTTTTCTAGTGTAGCATTTAGGGCCTTTTATAGAGAGAGAAAGAATGATATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR CCA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGTCCGATCACTGGGGTTaGCACAGACCTGGAACCCCC | + |
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Preference number: 4 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWSDHWG*HRPGTP Trigger: GGGGGTTCCAGGTCTGTGCCAACCCCAGTGATCGGA...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CAA 72 bp | CCACTTAAAATCCGCTGGGAAACCGAGTGGAAGAACTaGAGTGATTCTGAGGCAGTTAGGATGGCTGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: PLKIRWETEWKN*SDSEAVRMAVA Trigger: AGCTACAGCCATCCTAACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTTAAGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR GCA 90 bp | AAACATACTGAGGAAGAAATTGGGAGGAAAATCCCACTCTCAATACCTGCAAAATTCAAGCCCTTGCTGTaGCTTCAGACTGCTCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: KHTEEEIGRKIPLSIPAKFKPLL*LQTALD Trigger: GTCCAGAGCAGTCTGAAGGCACAGCAAGGGCTTGAA...TTTTGCAGGTATTGAGAGTGGGATTTTCCTCCCAATTTCTTCCTCAGTATGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR CCA 90 bp | ATAAATGGACTCAATTCAAGAAAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTGAACTCTCCGATCACTaGGGTTGGCACAGACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: INGLNSRKQKVDSENACGELSDH*GWHRPG Trigger: TCCAGGTCTGTGCCAACCCCAGTGATCGGAGAGTTC...ACCACAGGCATTTTCTGAATCTACTTTCTGCTTTCTTGAATTGAGTCCATTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| 3UTR CAA 72 bp | CAGGTGCTCTTAACCACCAAGCCATCTCTCCAGACCTaGCCCATTTATCTCAATCAAATATTATGTGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: QVLLTTKPSLQT*PIYLNQILCVV Trigger: GACTACACATAATATTTGATTGAGATAAATGGGCAAGGTCTGGAGAGATGGCTTGGTGGTTAAGAGCACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR GCA 90 bp | AAGCAGAAAGTAGATTCAGAAAATGCCTGTGGTGAAAACCAACAGCTCTTCATTTCAATTTCAAGCCCTTaGTGTGCCTTCAGACTGCTC | + |
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Preference number: 4 (lower is better) Translates to: KQKVDSENACGENQQLFISISSP*CAFRLL Trigger: GAGCAGTCTGAAGGCACAGCAAGGGCTTGAAATTGA...AATGAAGAGCTGTTGGTTTTCACCACAGGCATTTTCTGAATCTACTTTCTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR CCA 90 bp | AAACATACTGAGGAAGAAATTGGGAGGAAAATCCCACTCTCAATACCTGCAAAAGCCTTCAGACTGCTCTaGACTTCTTTTGTCTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: KHTEEEIGRKIPLSIPAKAFRLL*TSFVSV Trigger: AACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGC...TTTTGCAGGTATTGAGAGTGGGATTTTCCTCCCAATTTCTTCCTCAGTATGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR CAA 90 bp | GACCACGTGTTGGCTCAGGAACAGCTAGGTGGCAGGCAGCCGCAGTGGGAGTGGTTCAATTTCAAGCCCTaGCTGTGCCTTCAGACTGCT | + |
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Preference number: 5 (lower is better) Translates to: DHVLAQEQLGGRQPQWEWFNFKP*LCLQTA Trigger: AGCAGTCTGAAGGCACAGCAAGGGCTTGAAATTGAA...CCACTCCCACTGCGGCTGCCTGCCACCTAGCTGTTCCTGAGCCAACACGTGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR CAA 90 bp | AAAATCCGCTGGGAAACCGAGTGGAAGAACTTGAGTGATTCTGAGGCAGTTAGGCTCCGATCACTGGGGTaGGCACAGACCTGGAACCCC | + |
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Preference number: 5 (lower is better) Translates to: KIRWETEWKNLSDSEAVRLRSLG*AQTWNP Trigger: GGGGTTCCAGGTCTGTGCCAACCCCAGTGATCGGAG...CCTAACTGCCTCAGAATCACTCAAGTTCTTCCACTCGGTTTCCCAGCGGATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS GCA 90 bp | CCCTTGCTGTGCCTTCAGACTGCTCTGGACTTCTTTTGTCTCTGTTaGATGTGTGATCTGGGCCCAGATTCCAAGAGCAGTTGTAAGAAT | + |
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Preference number: 5 (lower is better) Translates to: PLLCLQTALDFFCLC*MCDLGPDSKSSCKN Trigger: ATTCTTACAACTGCTCTTGGAATCTGGGCCCAGATCACACATGCAACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCAAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS GCA 90 bp | GTCTTGAAAGCCCATGTGAAACATTTCAATTTCAAGCCCTTGCTGTaGCTTCAGACTGCTCTGGACTTCTTTTGTCTCTGTTGCATGTGT | + |
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Preference number: 5 (lower is better) Translates to: VLKAHVKHFNFKPLL*LQTALDFFCLCCMC Trigger: ACACATGCAACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCAAGGGCTTGAAATTGAAATGTTTCACATGGGCTTTCAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS-3UTR CAA 90 bp | TTTCAATACAATAAAGGAAATATACAACAAGCCTGTAGCCAACGGAATGCTAACACCTGGAACCCCCTCTaGCTGATAAAGATGATGCCC | + |
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Preference number: 5 (lower is better) Translates to: FQYNKGNIQQACSQRNANTWNPL*LIKMMP Trigger: GGGCATCATCTTTATCAGCAAGAGGGGGTTCCAGGT...GTTAGCATTCCGTTGGCTACAGGCTTGTTGTATATTTCCTTTATTGTATTGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS TCA 72 bp | GGTTGTGAGTTTTGCTCCAATCTTTCAATGCATCTCTaGACTCTCCGATCACTGGGGTTGGCACAGACCTGG | + |
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Preference number: 6 (lower is better) Translates to: GCEFCSNLSMHL*TLRSLGLAQTW Trigger: CCAGGTCTGTGCCAACCCCAGTGATCGGAGAGTTCAGAGATGCATTGAAAGATTGGAGCAAAACTCACAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS GCA 72 bp | TGCCTTCAGACTGCTCTGGACTTCTTTTGTCTCTGTTaGATGTGTGATCTGGGCCCAGATTCCAAGAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: CLQTALDFFCLC*MCDLGPDSKSS Trigger: ACTGCTCTTGGAATCTGGGCCCAGATCACACATGCAACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS CCA 72 bp | TCAATTTCAAGCCCTTGCTGTGCCTTCAGACTGCTCTaGACTTCTTTTGTCTCTGTTGCATGTGTGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: SISSPCCAFRLL*TSFVSVACVIW Trigger: CCAGATCACACATGCAACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCAAGGGCTTGAAATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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| CDS GCA 72 bp | GCCCATGTGAAACATTTCAATTTCAAGCCCTTGCTGTaGCTTCAGACTGCTCTGGACTTCTTTTGTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: AHVKHFNFKPLL*LQTALDFFCLC Trigger: ACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCAAGGGCTTGAAATTGAAATGTTTCACATGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019266.6 |
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