Pregenerated sensors for CCL8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009185Ensembl transcript IDs: ENSMUST00000009329.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCATCCTTGTAACATCTCTCTaGCTGGAGAAGATTAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SVVHITDKDEKTRSPGTILVTSL*LEKIRG Trigger: TCCCCTAATCTTCTCCAGGCAGAGAGATGTTACAAG...GATGGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| 3UTR-3UTR CCA 90 bp | ATTTCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCGAGAACTTCCAGCTTTaGCTGTCTCTTAACTCAGGT | + |
|
Preference number: 2 (lower is better) Translates to: ISVVHITDKDEKTRSPGTENFQL*LSLNSG Trigger: ACCTGAGTTAAGAGACAGCCAAAGCTGGAAGTTCTC...GGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| 3UTR GCA 72 bp | ACGCAGCCCAGGCACCATCTGCTTGTAACATCTCTCTaGCTGGAGAAGATTAGGGGAGAACTTCCAGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: TQPRHHLLVTSL*LEKIRGELPAL Trigger: CAAAGCTGGAAGTTCTCCCCTAATCTTCTCCAGGCAGAGAGATGTTACAAGCAGATGGTGCCTGGGCTGCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR CCA 90 bp | ATTTCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCCCCAGTCAGCTTCTCTaGGCTGACAGGGACAGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: ISVVHITDKDEKTRSPGTPSQLL*ADRDSY Trigger: ATAGCTGTCCCTGTCAGCCCAGAGAAGCTGACTGGG...GGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR TCA 90 bp | ATTTCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCTCTCCATGTACTCACTaGCCCACTTCTGTGTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ISVVHITDKDEKTRSPGTSPCTH*PTSVWG Trigger: ACCCCACACAGAAGTGGGTCAGTGAGTACATGGAGA...GGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR TCA 90 bp | TCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCATCCAAGGCTGCAGAATTTaGGACTTCTGGTCAAGGATC | + |
|
Preference number: 4 (lower is better) Translates to: SVVHITDKDEKTRSPGTIQGCRI*DFWSRI Trigger: GATCCTTGACCAGAAGTCTCAAATTCTGCAGCCTTG...GATGGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR CCA 90 bp | TCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCATCATACCCTGCTTGGTCTaGAAAACCACAGCTTCCATG | + |
|
Preference number: 4 (lower is better) Translates to: SVVHITDKDEKTRSPGTIIPCLV*KTTASM Trigger: CATGGAAGCTGTGGTTTTCCAGACCAAGCAGGGTAT...GATGGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR TCA 90 bp | TCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCATCTTCAGCTTTAGTACATaGAAGCAGCAGGTGACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SVVHITDKDEKTRSPGTIFSFST*KQQVTG Trigger: TCCAGTCACCTGCTGCTTTCATGTACTAAAGCTGAA...GATGGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR CCA 90 bp | ATTTCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCGCTTCCATGGGGCACTaGATATTGTTGATTCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: ISVVHITDKDEKTRSPGTASMGH*ILLILS Trigger: CGAGAGAATCAACAATATCCAGTGCCCCATGGAAGC...GGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS TCA 90 bp | GCTGCAGAATTTGAGACTTCTGGTCAAGGATCTCCATGTACTCACTaGCCCACTTCTGTGTGGGGTCTACACAGAGAGACATACCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: AAEFETSGQGSPCTH*PTSVWGLHRETYPA Trigger: AGCAGGGTATGTCTCTCTGTGTAGACCCCACACAGAAGTGGGTCAGTGAGTACATGGAGATCCTTGACCAGAAGTCTCAAATTCTGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS-3UTR CAA 90 bp | ATTTCAGTTGTTCATATAACAGACAAGGATGAGAAAACACGCAGCCCAGGCACCTCAAGGCTGCAGAATTaGAGACTTCTGGTCAAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: ISVVHITDKDEKTRSPGTSRLQN*RLLVKD Trigger: ATCCTTGACCAGAAGTCTCAAATTCTGCAGCCTTGA...GGTGCCTGGGCTGCGTGTTTTCTCATCCTTGTCTGTTATATGAACAACTGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS TCA 72 bp | TTCAGCACCCGAAGGGGGATCTTCAGCTTTAGTACATaGAAGCAGCAGGTGACTGGAGCCTTATCTGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: FSTRRGIFSFST*KQQVTGALSGP Trigger: TGGGCCAGATAAGGCTCCAGTCACCTGCTGCTTTCATGTACTAAAGCTGAAGATCCCCCTTCGGGTGCTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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| CDS TCA 72 bp | TTTGAGACTTCTGGTCAAGGATCTCCATGTACTCACTaGCCCACTTCTGTGTGGGGTCTACACAGAGAGACA | + |
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Preference number: 6 (lower is better) Translates to: FETSGQGSPCTH*PTSVWGLHRET Trigger: TGTCTCTCTGTGTAGACCCCACACAGAAGTGGGTCAGTGAGTACATGGAGATCCTTGACCAGAAGTCTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009329.3 |
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