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Pregenerated sensors for CCL7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035373

Ensembl transcript IDs: ENSMUST00000021011.3

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAATGGGGAAAGGGGGAGAATTCTGCAGCTAACACAACGTTAAAGTaGCATGAGGTCTCCAGAGCTTTACATTCAAATCACACCAAAGTA +
Preference number: 1 (lower is better)
Translates to: KWGKGENSAANTTLK*HEVSRALHSNHTKV
Trigger: TACTTTGGTGTGATTTGAATGTAAAGCTCTGGAGACCTCATGTCACTTTAACGTTGTGTTAGCTGCAGAATTCTCCCCCTTTCCCCATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
3UTR-3UTR GCA 90 bp GTGACCATTTCACATTCCTACAGACAGCTCCTATCCCTTAGGACCGTGATCAACAGCGGTGAGGAATTTTaGTTCTTGGCTCCTAGGTTG +
Preference number: 2 (lower is better)
Translates to: VTISHSYRQLLSLRTVINSGEEF*FLAPRL
Trigger: CAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCT...GTTGATCACGGTCCTAAGGGATAGGAGCTGTCTGTAGGAATGTGAAATGGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
3UTR-3UTR CCA 90 bp GACCATTCCTTAGGCGTGACCATTTCACATTCCTACAGACAGCTCCTATCCCTTTCTTGGCTCCTAGGTTaGTTTCTGTTCAGGCACATT +
Preference number: 2 (lower is better)
Translates to: DHSLGVTISHSYRQLLSLSWLLG*FLFRHI
Trigger: AATGTGCCTGAACAGAAACCAACCTAGGAGCCAAGA...AAGGGATAGGAGCTGTCTGTAGGAATGTGAAATGGTCACGCCTAAGGAATGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
3UTR GCA 72 bp TCAACAGTTCTCAGAAAGAACAGCGGTGAGGAATTTTaGTTCTTGGCTCCTAGGTTGGTTTCTGTTCAGGCA +
Preference number: 3 (lower is better)
Translates to: STVLRKNSGEEF*FLAPRLVSVQA
Trigger: TGCCTGAACAGAAACCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCTGAGAACTGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
3UTR CCA 72 bp TTCTCAGAAAGAACAGCGGTGAGGAATTTTGCTTCTTaGCTCCTAGGTTGGTTTCTGTTCAGGCACATTTCT +
Preference number: 3 (lower is better)
Translates to: FSERTAVRNFAS*LLGWFLFRHIS
Trigger: AGAAATGTGCCTGAACAGAAACCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
3UTR TCA 72 bp AAGGGGGAGAATTCTGCAGCTAACACAACGTTAAAGTaGCATGAGGTCTCCAGAGCTTTACATTCAAATCAC +
Preference number: 3 (lower is better)
Translates to: KGENSAANTTLK*HEVSRALHSNH
Trigger: GTGATTTGAATGTAAAGCTCTGGAGACCTCATGTCACTTTAACGTTGTGTTAGCTGCAGAATTCTCCCCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS-3UTR CCA 90 bp GTGACCATTTCACATTCCTACAGACAGCTCCTATCCCTTAGGACCGTGATCAACGGTTGGGCCCACACTTaGATGCTGAAAGCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: VTISHSYRQLLSLRTVINGWAHT*MLKAAA
Trigger: AGCCGCTGCTTTCAGCATCCAAGTGTGGGCCCAACC...GTTGATCACGGTCCTAAGGGATAGGAGCTGTCTGTAGGAATGTGAAATGGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS-3UTR CCA 90 bp CAGTTCTCAGAAAGAACAGCGGTGAGGAATTTTGCTTCTTGGCTCCTAGGTTGGTTGGGCCCATCTGGTTaGGCCCACACTTGGATGCTG +
Preference number: 4 (lower is better)
Translates to: QFSERTAVRNFASWLLGWLGPSG*AHTWML
Trigger: CAGCATCCAAGTGTGGGCCCAACCAGATGGGCCCAA...CCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCTGAGAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS-3UTR TCA 90 bp AGAAAGAACAGCGGTGAGGAATTTTGCTTCTTGGCTCCTAGGTTGGTTTCTGTTTCCTCGACCCACTTCTaGTGGGCTTCAGCGCAGACT +
Preference number: 4 (lower is better)
Translates to: RKNSGEEFCFLAPRLVSVSSTHF*WASAQT
Trigger: AGTCTGCGCTGAAGCCCATCAGAAGTGGGTCGAGGA...AACAGAAACCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS-3UTR GCA 90 bp CAGTTCTCAGAAAGAACAGCGGTGAGGAATTTTGCTTCTTGGCTCCTAGGTTGGATAGCAGCATGTGGATaGATTGGGCCCATCTGGTTG +
Preference number: 4 (lower is better)
Translates to: QFSERTAVRNFASWLLGWIAACG*IGPIWL
Trigger: CAACCAGATGGGCCCAATGCATCCACATGCTGCTAT...CCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCTGAGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
3UTR CAA 72 bp GTTCTCAGAAAGAACAGCGGTGAGGAATTTTGCTTCTaGGCTCCTAGGTTGGTTTCTGTTCAGGCACATTTC +
Preference number: 4 (lower is better)
Translates to: VLRKNSGEEFCF*APRLVSVQAHF
Trigger: GAAATGTGCCTGAACAGAAACCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCTGAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS CCA 90 bp CTTTTGTTTCTTGACATAGCAGCATGTGGATGCATTGGGCCCATCTaGTTGGGCCCACACTTGGATGCTGAAAGCAGCGGCTATGAGCAG +
Preference number: 5 (lower is better)
Translates to: LLFLDIAACGCIGPI*LGPHLDAESSGYEQ
Trigger: CTGCTCATAGCCGCTGCTTTCAGCATCCAAGTGTGGGCCCAACCAGATGGGCCCAATGCATCCACATGCTGCTATGTCAAGAAACAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS TCA 90 bp GGGGTTTTCATGTCTAAGTATGCTATAGCCTCCTCGACCCACTTCTaGTGGGCTTCAGCGCAGACTTCCATGCCCTTCTTTGTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: GVFMSKYAIASSTHF*WASAQTSMPFFVLK
Trigger: CTTCAAGACAAAGAAGGGCATGGAAGTCTGCGCTGAAGCCCATCAGAAGTGGGTCGAGGAGGCTATAGCATACTTAGACATGAAAACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS GCA 90 bp ATTCCTCTTGGGGATCTTTTGTTTCTTGACATAGCAGCATGTGGATaGATTGGGCCCATCTGGTTGGGCCCACACTTGGATGCTGAAAGC +
Preference number: 5 (lower is better)
Translates to: IPLGDLLFLDIAACG*IGPIWLGPHLDAES
Trigger: GCTTTCAGCATCCAAGTGTGGGCCCAACCAGATGGGCCCAATGCATCCACATGCTGCTATGTCAAGAAACAAAAGATCCCCAAGAGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS-3UTR CAA 90 bp GTGACCATTTCACATTCCTACAGACAGCTCCTATCCCTTAGGACCGTGATCAACCTCTTGAGATTCCTCTaGGGGATCTTTTGTTTCTTG +
Preference number: 5 (lower is better)
Translates to: VTISHSYRQLLSLRTVINLLRFL*GIFCFL
Trigger: CAAGAAACAAAAGATCCCCAAGAGGAATCTCAAGAG...GTTGATCACGGTCCTAAGGGATAGGAGCTGTCTGTAGGAATGTGAAATGGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS-3UTR CAA 90 bp AGAAAGAACAGCGGTGAGGAATTTTGCTTCTTGGCTCCTAGGTTGGTTTCTGTTCCTCTTGGGGATCTTTaGTTTCTTGACATAGCAGCA +
Preference number: 5 (lower is better)
Translates to: RKNSGEEFCFLAPRLVSVPLGDL*FLDIAA
Trigger: TGCTGCTATGTCAAGAAACAAAAGATCCCCAAGAGG...AACAGAAACCAACCTAGGAGCCAAGAAGCAAAATTCCTCACCGCTGTTCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS CAA 72 bp GACATAGCAGCATGTGGATGCATTGGGCCCATCTGGTaGGGCCCACACTTGGATGCTGAAAGCAGCGGCTAT +
Preference number: 6 (lower is better)
Translates to: DIAACGCIGPIW*GPHLDAESSGY
Trigger: ATAGCCGCTGCTTTCAGCATCCAAGTGTGGGCCCAACCAGATGGGCCCAATGCATCCACATGCTGCTATGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS GCA 72 bp GGGGATCTTTTGTTTCTTGACATAGCAGCATGTGGATaGATTGGGCCCATCTGGTTGGGCCCACACTTGGAT +
Preference number: 6 (lower is better)
Translates to: GDLLFLDIAACG*IGPIWLGPHLD
Trigger: ATCCAAGTGTGGGCCCAACCAGATGGGCCCAATGCATCCACATGCTGCTATGTCAAGAAACAAAAGATCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3
CDS TCA 72 bp ATGTCTAAGTATGCTATAGCCTCCTCGACCCACTTCTaGTGGGCTTCAGCGCAGACTTCCATGCCCTTCTTT +
Preference number: 6 (lower is better)
Translates to: MSKYAIASSTHF*WASAQTSMPFF
Trigger: AAAGAAGGGCATGGAAGTCTGCGCTGAAGCCCATCAGAAGTGGGTCGAGGAGGCTATAGCATACTTAGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021011.3