Pregenerated sensors for CCL6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018927Ensembl transcript IDs: ENSMUST00000019071.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGTTATATGGTCCCATCTCCCTCCTGTACTCAAGGTGAGTGAGTaGGATAATTTCACCCCAAGAGCCCAGTTTCAGACTGGCCCCGTA | + |
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Preference number: 1 (lower is better) Translates to: KVIWSHLPPVLKVSE*DNFTPRAQFQTGPV Trigger: TACGGGGCCAGTCTGAAACTGGGCTCTTGGGGTGAAATTATCTCACTCACTCACCTTGAGTACAGGAGGGAGATGGGACCATATAACTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CCA 90 bp | GTGGCAGGGCGAACAACTGGGAACCCACAAAGCTGGACATATGTATaGCCTAGGGCAAAATTGATTTCATCTCAGCTAGATATTACCCGG | + |
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Preference number: 1 (lower is better) Translates to: VAGRTTGNPQSWTYV*PRAKLISSQLDITR Trigger: CCGGGTAATATCTAGCTGAGATGAAATCAATTTTGCCCTAGGCCATACATATGTCCAGCTTTGTGGGTTCCCAGTTGTTCGCCCTGCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CCA 90 bp | GACTGGCCCCGTAGTTCTATGAATCTGAAGAAAGAGACAGTCCTGTaGCTACATGGAGTGGACTTTATTGGGGGCACTCATTGCTCTATT | + |
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Preference number: 1 (lower is better) Translates to: DWPRSSMNLKKETVL*LHGVDFIGGTHCSI Trigger: AATAGAGCAATGAGTGCCCCCAATAAAGTCCACTCCATGTAGCCACAGGACTGTCTCTTTCTTCAGATTCATAGAACTACGGGGCCAGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CCA 90 bp | CATTGCTCTATTGTGGCAGGGCGAACAACTGGGAACCCACAAAGCTaGACATATGTATGGCCTAGGGCAAAATTGATTTCATCTCAGCTA | + |
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Preference number: 1 (lower is better) Translates to: HCSIVAGRTTGNPQS*TYVWPRAKLISSQL Trigger: TAGCTGAGATGAAATCAATTTTGCCCTAGGCCATACATATGTCCAGCTTTGTGGGTTCCCAGTTGTTCGCCCTGCCACAATAGAGCAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CCA 90 bp | TACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTTGAAGAAGACGCCCTGCTaGAAAAGGTATTCCTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: YWECLICMERHSRNPRYLKKTPC*KRYSSV Trigger: AACAGAGGAATACCTTTTCCAGCAGGGCGTCTTCTT...CAAGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR GCA 90 bp | TACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTTGGGTATTCCTCTGTTTTaGACCAAGCTCAGAGGAATA | + |
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Preference number: 2 (lower is better) Translates to: YWECLICMERHSRNPRYLGIPLF*TKLRGI Trigger: TATTCCTCTGAGCTTGGTGCAAAACAGAGGAATACC...CAAGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CCA 90 bp | AGTTCTATGAATCTGAAGAAAGAGACAGTCCTGTGGCTACATGGAGTGGACTTTGGGAACCCACAAAGCTaGACATATGTATGGCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: SSMNLKKETVLWLHGVDFGNPQS*TYVWPR Trigger: CCTAGGCCATACATATGTCCAGCTTTGTGGGTTCCC...AAAGTCCACTCCATGTAGCCACAGGACTGTCTCTTTCTTCAGATTCATAGAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR TCA 90 bp | TTTAAAGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGCTCCTGTACTCAAGGTaGGTGAGTGAGATAATTTCA | + |
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Preference number: 2 (lower is better) Translates to: FKVLGMPHLHGEAFQESQLLYSR*VSEIIS Trigger: TGAAATTATCTCACTCACTCACCTTGAGTACAGGAG...CTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACTTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CCA 90 bp | TACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTTGAGCTGGACATATGTATaGCCTAGGGCAAAATTGATT | + |
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Preference number: 2 (lower is better) Translates to: YWECLICMERHSRNPRYLSWTYV*PRAKLI Trigger: AATCAATTTTGCCCTAGGCCATACATATGTCCAGCT...CAAGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CAA 90 bp | ACTGGGAACCCACAAAGCTGGACATATGTATGGCCTAGGGCAAAATaGATTTCATCTCAGCTAGATATTACCCGGCTTAAGCTTGTATCA | + |
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Preference number: 2 (lower is better) Translates to: TGNPQSWTYVWPRAK*ISSQLDITRLKLVS Trigger: TGATACAAGCTTAAGCCGGGTAATATCTAGCTGAGATGAAATCAATTTTGCCCTAGGCCATACATATGTCCAGCTTTGTGGGTTCCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CCA 90 bp | AGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTATATTCAAAGTTATATaGTCCCATCTCCCTCCTGTA | + |
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Preference number: 2 (lower is better) Translates to: STGNASFAWRGIPGIPDTIFKVI*SHLPPV Trigger: TACAGGAGGGAGATGGGACCATATAACTTTGAATAT...AGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR TCA 90 bp | GAACCTTGGAGTATAGGAAGGAGTTTTCAGGGTAAATGTAAATTACTAGATGAAACAGAAGAAAGTGGGTaGCAATGCCTGCCCTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: EPWSIGRSFQGKCKLLDETEESG*QCLPSF Trigger: GAAGGAGGGCAGGCATTGTCACCCACTTTCTTCTGT...TTCATCTAGTAATTTACATTTACCCTGAAAACTCCTTCCTATACTCCAAGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CCA 90 bp | GAACCTTGGAGTATAGGAAGGAGTTTTCAGGGTAAATGTAAATTACTAGATGAAGAAGACAGAAGAAAGTaGGTGACAATGCCTGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: EPWSIGRSFQGKCKLLDEEDRRK*VTMPAL Trigger: GAGGGCAGGCATTGTCACCCACTTTCTTCTGTCTTC...TTCATCTAGTAATTTACATTTACCCTGAAAACTCCTTCCTATACTCCAAGGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR TCA 90 bp | GCTATACATGAACCTTGGAGTATAGGAAGGAGTTTTCAGGGTAAATGTAAATTACTCAAGGTGAGTGAGTaGGATAATTTCACCCCAAGA | + |
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Preference number: 2 (lower is better) Translates to: AIHEPWSIGRSFQGKCKLLKVSE*DNFTPR Trigger: TCTTGGGGTGAAATTATCTCACTCACTCACCTTGAG...TAATTTACATTTACCCTGAAAACTCCTTCCTATACTCCAAGGTTCATGTATAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CAA 90 bp | TACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTTGGCACTCATTGCTCTATaGTGGCAGGGCGAACAACTG | + |
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Preference number: 3 (lower is better) Translates to: YWECLICMERHSRNPRYLALIAL*WQGEQL Trigger: CAGTTGTTCGCCCTGCCACAATAGAGCAATGAGTGC...CAAGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CAA 90 bp | TTAAAGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATTACCCGGCTTAAGCTaGTATCAGAACCAGACACAT | + |
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Preference number: 3 (lower is better) Translates to: LKYWECLICMERHSRNPRLPGLS*YQNQTH Trigger: ATGTGTCTGGTTCTGATACAAGCTTAAGCCGGGTAA...TCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CAA 90 bp | AGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTTGGCCTAGGGCAAAATaGATTTCATCTCAGCTAGAT | + |
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Preference number: 3 (lower is better) Translates to: STGNASFAWRGIPGIPDTWPRAK*ISSQLD Trigger: ATCTAGCTGAGATGAAATCAATTTTGCCCTAGGCCA...AGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR TCA 72 bp | TGCAGGTTCTTACTTGTAGATTTGCCAACAACTACCTaGACTTCCTCAGGTAGAGGGTGTGAAGGTCAGGTT | + |
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Preference number: 3 (lower is better) Translates to: CRFLLVDLPTTT*TSSGRGCEGQV Trigger: AACCTGACCTTCACACCCTCTACCTGAGGAAGTTCAGGTAGTTGTTGGCAAATCTACAAGTAAGAACCTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CCA 72 bp | CGTAGTTCTATGAATCTGAAGAAAGAGACAGTCCTGTaGCTACATGGAGTGGACTTTATTGGGGGCACTCAT | + |
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Preference number: 3 (lower is better) Translates to: RSSMNLKKETVL*LHGVDFIGGTH Trigger: ATGAGTGCCCCCAATAAAGTCCACTCCATGTAGCCACAGGACTGTCTCTTTCTTCAGATTCATAGAACTACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR GCA 72 bp | AGAAGACGCCCTGCTGGAAAAGGTATTCCTCTGTTTTaGACCAAGCTCAGAGGAATAAACCGTGTTCTTAAT | + |
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Preference number: 3 (lower is better) Translates to: RRRPAGKGIPLF*TKLRGINRVLN Trigger: ATTAAGAACACGGTTTATTCCTCTGAGCTTGGTGCAAAACAGAGGAATACCTTTTCCAGCAGGGCGTCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR GCA 72 bp | ACCGTGTCAGGCGGAGTCCACATGAATACTGTTGACTaGTCTAAACCTGAACAGAAGGATAAATGCTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: TVSGGVHMNTVD*SKPEQKDKCFK Trigger: TTTAAAGCATTTATCCTTCTGTTCAGGTTTAGAGCAGTCAACAGTATTCATGTGGACTCCGCCTGACACGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR-3UTR CAA 90 bp | GCTATACATGAACCTTGGAGTATAGGAAGGAGTTTTCAGGGTAAATGTAAATTAAGGTATTCCTCTGTTTaGCACCAAGCTCAGAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: AIHEPWSIGRSFQGKCKLRYSSV*HQAQRN Trigger: ATTCCTCTGAGCTTGGTGCAAAACAGAGGAATACCT...TAATTTACATTTACCCTGAAAACTCCTTCCTATACTCCAAGGTTCATGTATAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR GCA 90 bp | TATTGTGGCAGGGCGAACAACTGGGAACCCACAAAGCTGGACATATGTATGGCCGGCCTTGCTTCAGGGTaGTTAGGCACCTCTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: YCGRANNWEPTKLDICMAGLASG*LGTSEL Trigger: GAGTTCAGAGGTGCCTAAGCACCCTGAAGCAAGGCC...GGCCATACATATGTCCAGCTTTGTGGGTTCCCAGTTGTTCGCCCTGCCACAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR CCA 90 bp | AGTTCTATGAATCTGAAGAAAGAGACAGTCCTGTGGCTACATGGAGTGGACTTTTGTATGAGGCCAGCCTaGGACCCAAGGACAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: SSMNLKKETVLWLHGVDFCMRPA*DPRTAT Trigger: TGTGGCTGTCCTTGGGTCCCAGGCTGGCCTCATACA...AAAGTCCACTCCATGTAGCCACAGGACTGTCTCTTTCTTCAGATTCATAGAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR CCA 90 bp | CAAAGCTGGACATATGTATGGCCTAGGGCAAAATTGATTTCATCTCAGCTAGATGGGTCGGCACAGACCTaGGTTCCCCTCCTGCTGATA | + |
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Preference number: 4 (lower is better) Translates to: QSWTYVWPRAKLISSQLDGSAQT*VPLLLI Trigger: TATCAGCAGGAGGGGAACCCAGGTCTGTGCCGACCC...ATCTAGCTGAGATGAAATCAATTTTGCCCTAGGCCATACATATGTCCAGCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR TCA 90 bp | TTTAAAGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGAGAGAAGCAGCAGTCTaGAGAAGTGTCTTGAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: FKVLGMPHLHGEAFQESQREAAV*RSVLKA Trigger: GGCTTTCAAGACACTTCTTCAGACTGCTGCTTCTCT...CTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACTTTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR TCA 90 bp | AGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTCACAAGGATAAAGAATaGAATGGCAGTCTTGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: STGNASFAWRGIPGIPDTHKDKE*NGSLGV Trigger: AACTCCAAGACTGCCATTTCATTCTTTATCCTTGTG...AGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CAA 72 bp | ATTTGCATGGAGAGGCATTCCAGGAATCCCAGATACTaGGTGTGCAGGTTCTTACTTGTAGATTTGCCAACA | + |
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Preference number: 4 (lower is better) Translates to: ICMERHSRNPRY*VCRFLLVDLPT Trigger: TGTTGGCAAATCTACAAGTAAGAACCTGCACACCAAGTATCTGGGATTCCTGGAATGCCTCTCCATGCAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR GCA 90 bp | GAACCTTGGAGTATAGGAAGGAGTTTTCAGGGTAAATGTAAATTACTAGATGAACCAGATCTTGGGCCTTaGTTCAGGGTGCTTAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: EPWSIGRSFQGKCKLLDEPDLGP*FRVLRH Trigger: GTGCCTAAGCACCCTGAAGCAAGGCCCAAGATCTGG...TTCATCTAGTAATTTACATTTACCCTGAAAACTCCTTCCTATACTCCAAGGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| 3UTR CAA 72 bp | CCACAAAGCTGGACATATGTATGGCCTAGGGCAAAATaGATTTCATCTCAGCTAGATATTACCCGGCTTAAG | + |
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Preference number: 4 (lower is better) Translates to: PQSWTYVWPRAK*ISSQLDITRLK Trigger: CTTAAGCCGGGTAATATCTAGCTGAGATGAAATCAATTTTGCCCTAGGCCATACATATGTCCAGCTTTGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR CCA 90 bp | CAAAGCTGGACATATGTATGGCCTAGGGCAAAATTGATTTCATCTCAGCTAGATTACATGGGATCTGTGTaGCATAAGAGAAGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: QSWTYVWPRAKLISSQLDYMGSV*HKRSSS Trigger: ACTGCTGCTTCTCTTATGCCACACAGATCCCATGTA...ATCTAGCTGAGATGAAATCAATTTTGCCCTAGGCCATACATATGTCCAGCTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS TCA 90 bp | TTGTTCCCAGATCTTGGGCCTTGCTTCAGGGTGCTTAGGCACCTCTaGACTCTCCGATCGCTGGGGTCGGCACAGACCTGGGTTCCCCTC | + |
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Preference number: 5 (lower is better) Translates to: LFPDLGPCFRVLRHL*TLRSLGSAQTWVPL Trigger: GAGGGGAACCCAGGTCTGTGCCGACCCCAGCGATCGGAGAGTTCAGAGGTGCCTAAGCACCCTGAAGCAAGGCCCAAGATCTGGGAACAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR CAA 90 bp | TTTAAAGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGTTCTTTTTCCATTTCTaGTATGAGGCCAGCCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: FKVLGMPHLHGEAFQESQFFFHF*YEASLG Trigger: TCCCAGGCTGGCCTCATACAAGAAATGGAAAAAGAA...CTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACTTTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR CAA 90 bp | GCTATACATGAACCTTGGAGTATAGGAAGGAGTTTTCAGGGTAAATGTAAATTACCTTGTTCCCAGATCTaGGGCCTTGCTTCAGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: AIHEPWSIGRSFQGKCKLPCSQI*GLASGC Trigger: GCACCCTGAAGCAAGGCCCAAGATCTGGGAACAAGG...TAATTTACATTTACCCTGAAAACTCCTTCCTATACTCCAAGGTTCATGTATAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS-3UTR CAA 90 bp | TTTAAAGTACTGGGAATGCCTCATTTGCATGGAGAGGCATTCCAGGAATCCCAGAGTGTCTTGAAAGCCTaGATGAATTATTGGAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: FKVLGMPHLHGEAFQESQSVLKA*MNYWRV Trigger: AACCCTCCAATAATTCATCAAGGCTTTCAAGACACT...CTGGGATTCCTGGAATGCCTCTCCATGCAAATGAGGCATTCCCAGTACTTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS TCA 90 bp | AAATCTTTTACATGGGATCTGTGTGGCATAAGAGAAGCAGCAGTCTaGAGAAGTGTCTTGAAAGCCTTGATGAATTATTGGAGGGTTATA | + |
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Preference number: 5 (lower is better) Translates to: KSFTWDLCGIREAAV*RSVLKALMNYWRVI Trigger: TATAACCCTCCAATAATTCATCAAGGCTTTCAAGACACTTCTTCAGACTGCTGCTTCTCTTATGCCACACAGATCCCATGTAAAAGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS TCA 72 bp | GATCTTGGGCCTTGCTTCAGGGTGCTTAGGCACCTCTaGACTCTCCGATCGCTGGGGTCGGCACAGACCTGG | + |
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Preference number: 6 (lower is better) Translates to: DLGPCFRVLRHL*TLRSLGSAQTW Trigger: CCAGGTCTGTGCCGACCCCAGCGATCGGAGAGTTCAGAGGTGCCTAAGCACCCTGAAGCAAGGCCCAAGATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS CAA 72 bp | TGGAGGGTTATAGCGACGATCTTCTTTTTCCATTTCTaGTATGAGGCCAGCCTGGGACCCAAGGACAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: WRVIATIFFFHF*YEASLGPKDSH Trigger: GTGGCTGTCCTTGGGTCCCAGGCTGGCCTCATACAAGAAATGGAAAAAGAAGATCGTCGCTATAACCCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS TCA 72 bp | GGTTATAGCGACGATCTTCTTTTTCCATTTCTTGTATaGGGCCAGCCTGGGACCCAAGGACAGCCACAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GYSDDLLFPFLV*GQPGTQGQPQG Trigger: TCCTTGTGGCTGTCCTTGGGTCCCAGGCTGGCCTCATACAAGAAATGGAAAAAGAAGATCGTCGCTATAACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS CCA 72 bp | CGATCTTCTTTTTCCATTTCTTGTATGAGGCCAGCCTaGGACCCAAGGACAGCCACAAGGATAAAGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: RSSFSISCMRPA*DPRTATRIKNE Trigger: TTCATTCTTTATCCTTGTGGCTGTCCTTGGGTCCCAGGCTGGCCTCATACAAGAAATGGAAAAAGAAGATCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS CAA 90 bp | ATGAATTATTGGAGGGTTATAGCGACGATCTTCTTTTTCCATTTCTaGTATGAGGCCAGCCTGGGACCCAAGGACAGCCACAAGGATAAA | + |
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Preference number: 6 (lower is better) Translates to: MNYWRVIATIFFFHF*YEASLGPKDSHKDK Trigger: TTTATCCTTGTGGCTGTCCTTGGGTCCCAGGCTGGCCTCATACAAGAAATGGAAAAAGAAGATCGTCGCTATAACCCTCCAATAATTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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| CDS TCA 72 bp | ACATGGGATCTGTGTGGCATAAGAGAAGCAGCAGTCTaGAGAAGTGTCTTGAAAGCCTTGATGAATTATTGG | + |
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Preference number: 6 (lower is better) Translates to: TWDLCGIREAAV*RSVLKALMNYW Trigger: CCAATAATTCATCAAGGCTTTCAAGACACTTCTTCAGACTGCTGCTTCTCTTATGCCACACAGATCCCATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019071.4 |
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