Pregenerated sensors for CCL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035042Ensembl transcript IDs: ENSMUST00000035938.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TTGGGTTTGCTGTGCAGAGCCTCGGAGCAGCTGAGATaGCCATTTTCCCAGGACCGAGTGGGAGTAGGGGAT | + |
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Preference number: 3 (lower is better) Translates to: LGLLCRASEQLR*PFSQDRVGVGD Trigger: ATCCCCTACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTGCACAGCAAACCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR TCA 90 bp | CCGAGTGGGAGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGACTAGAGTCCGAGCCATATGGTaGGGCAGGTGCGGGGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: PSGSRGLLSGIPKLARTRVRAIW*GRCGGA Trigger: TGCACCCCCGCACCTGCCTCACCATATGGCTCGGAC...TCTAGTCCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACTCCCACTCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CCA 90 bp | CAGAGCCTCGGAGCAGCTGAGATGCCCATTTTCCCAGGACCGAGTGGGAGTAGGAAATACTCCTTGACGTaGGCACGAGGCAGCGCGAGG | + |
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Preference number: 4 (lower is better) Translates to: QSLGAAEMPIFPGPSGSRKYSLT*ARGSAR Trigger: CCTCGCGCTGCCTCGTGCCCACGTCAAGGAGTATTT...CCTACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CCA 90 bp | GTGCAGAGCCTCGGAGCAGCTGAGATGCCCATTTTCCCAGGACCGAGTGGGAGTCAAAGCAGCAGGGAGTaGTGTCCGAGCCATATGGTG | + |
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Preference number: 4 (lower is better) Translates to: VQSLGAAEMPIFPGPSGSQSSRE*CPSHMV Trigger: CACCATATGGCTCGGACACCACTCCCTGCTGCTTTG...ACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CCA 90 bp | CAGAGCCTCGGAGCAGCTGAGATGCCCATTTTCCCAGGACCGAGTGGGAGTAGGACTTCTTCTCTGGGTTaGCACACACTTGGCGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: QSLGAAEMPIFPGPSGSRTSSLG*HTLGGS Trigger: GGAACCGCCAAGTGTGTGCCAACCCAGAGAAGAAGT...CCTACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CCA 90 bp | CCGAGTGGGAGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGACTAGAGGGTTGGCACACACTTaGCGGTTCCTTCGAGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: PSGSRGLLSGIPKLARTRGLAHT*RFLRVT Trigger: TGTCACTCGAAGGAACCGCCAAGTGTGTGCCAACCC...TCTAGTCCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACTCCCACTCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR GCA 90 bp | GTGCAGAGCCTCGGAGCAGCTGAGATGCCCATTTTCCCAGGACCGAGTGGGAGTGATTGGAGCACTTGCTaGTGGTGTAGAAATACTCCT | + |
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Preference number: 4 (lower is better) Translates to: VQSLGAAEMPIFPGPSGSDWSTC*WCRNTP Trigger: AGGAGTATTTCTACACCAGCAGCAAGTGCTCCAATC...ACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CCA 90 bp | AGTGGGAGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGACTAGAGCAAACCCACTTCTTCTCTaGGTTGGCACACACTTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: SGSRGLLSGIPKLARTRANPLLL*VGTHLA Trigger: CGCCAAGTGTGTGCCAACCCAGAGAAGAAGTGGGTT...TGCTCTAGTCCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACTCCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR GCA 90 bp | CCAGGACCGAGTGGGAGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGCAAGATTGGAGCACTTaGTGCTGGTGTAGAAATACT | + |
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Preference number: 4 (lower is better) Translates to: PGPSGSRGLLSGIPKLARQDWST*CWCRNT Trigger: AGTATTTCTACACCAGCAGCAAGTGCTCCAATCTTG...CCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACTCCCACTCGGTCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR TCA 90 bp | GTGCAGAGCCTCGGAGCAGCTGAGATGCCCATTTTCCCAGGACCGAGTGGGAGTTCATCTCCAAATAGTTaGTGTATTCTTGAACCCACT | + |
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Preference number: 4 (lower is better) Translates to: VQSLGAAEMPIFPGPSGSSSPNS*CILEPT Trigger: AGTGGGTTCAAGAATACATCAACTATTTGGAGATGA...ACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS CCA 90 bp | GGGCACGAGGCAGCGCGAGGGAGAGGTAGGCAAAGCAGCAGGGAGTaGTGTCCGAGCCATATGGTGAGGCAGGTGCGGGGGTGCAGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GHEAARGRGRQSSRE*CPSHMVRQVRGCRG Trigger: CCCTCTGCACCCCCGCACCTGCCTCACCATATGGCTCGGACACCACTCCCTGCTGCTTTGCCTACCTCTCCCTCGCGCTGCCTCGTGCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS TCA 90 bp | GGAGAGGTAGGCAAAGCAGCAGGGAGTGGTGTCCGAGCCATATGGTaGGGCAGGTGCGGGGGTGCAGAGGGCGGCTGCAGTGAGGATGAT | + |
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Preference number: 5 (lower is better) Translates to: GEVGKAAGSGVRAIW*GRCGGAEGGCSEDD Trigger: ATCATCCTCACTGCAGCCGCCCTCTGCACCCCCGCACCTGCCTCACCATATGGCTCGGACACCACTCCCTGCTGCTTTGCCTACCTCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CAA 90 bp | GTGCAGAGCCTCGGAGCAGCTGAGATGCCCATTTTCCCAGGACCGAGTGGGAGTCACTTCTTCTCTGGGTaGGCACACACTTGGCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: VQSLGAAEMPIFPGPSGSHFFSG*AHTWRF Trigger: GAACCGCCAAGTGTGTGCCAACCCAGAGAAGAAGTG...ACTCCCACTCGGTCCTGGGAAAATGGGCATCTCAGCTGCTCCGAGGCTCTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CAA 90 bp | AGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGACTAGAGCAAGCAATTGGGTTGGCACACACTaGGCGGTTCCTTCGAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: SRGLLSGIPKLARTRASNWVGTH*AVPSSD Trigger: GTCACTCGAAGGAACCGCCAAGTGTGTGCCAACCCA...ATTGCTTGCTCTAGTCCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CAA 90 bp | AGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGACTAGAGCAAGCAATAACACGACTGCAAGATaGGAGCACTTGCTGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: SRGLLSGIPKLARTRASNNTTAR*EHLLLV Trigger: CACCAGCAGCAAGTGCTCCAATCTTGCAGTCGTGTT...ATTGCTTGCTCTAGTCCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS-3UTR CAA 90 bp | CCAGGACCGAGTGGGAGTAGGGGATTACTGAGTGGCATCCCCAAGCTGGCTAGGATAGTTGATGTATTCTaGAACCCACTTCTTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: PGPSGSRGLLSGIPKLARIVDVF*NPLLLW Trigger: CCAGAGAAGAAGTGGGTTCAAGAATACATCAACTAT...CCTAGCCAGCTTGGGGATGCCACTCAGTAATCCCCTACTCCCACTCGGTCCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS TCA 72 bp | GGCAAAGCAGCAGGGAGTGGTGTCCGAGCCATATGGTaGGGCAGGTGCGGGGGTGCAGAGGGCGGCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: GKAAGSGVRAIW*GRCGGAEGGCS Trigger: ACTGCAGCCGCCCTCTGCACCCCCGCACCTGCCTCACCATATGGCTCGGACACCACTCCCTGCTGCTTTGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS TCA 72 bp | TCTCTGGGTTGGCACACACTTGGCGGTTCCTTCGAGTaGCAAACACGACTGCAAGATTGGAGCACTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SLGWHTLGGSFE*QTRLQDWSTCC Trigger: GCAGCAAGTGCTCCAATCTTGCAGTCGTGTTTGTCACTCGAAGGAACCGCCAAGTGTGTGCCAACCCAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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| CDS CAA 72 bp | TTCTTGAACCCACTTCTTCTCTGGGTTGGCACACACTaGGCGGTTCCTTCGAGTGACAAACACGACTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: FLNPLLLWVGTH*AVPSSDKHDCK Trigger: CTTGCAGTCGTGTTTGTCACTCGAAGGAACCGCCAAGTGTGTGCCAACCCAGAGAAGAAGTGGGTTCAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035938.3 |
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