Pregenerated sensors for CCL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018930Ensembl transcript IDs: ENSMUST00000019074.4
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AATAGCAGAGAAACAGCAATGGTGGACCATCTCCATGGGAGACACGCGTCCTATAAGGACGCTTCTCAGTaGGAAGCATCAGGGCTGAGG | + |
|
Preference number: 2 (lower is better) Translates to: NSRETAMVDHLHGRHASYKDASQ*EASGLR Trigger: CCTCAGCCCTGATGCTTCTCACTGAGAAGCGTCCTT...ATAGGACGCGTGTCTCCCATGGAGATGGTCCACCATTGCTGTTTCTCTGCTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019074.4 |
||
| CDS-3UTR TCA 90 bp | GAACGTGAGGAGCAAGGACGCTTCTCAGTGAGAAGCATCAGGGCTGAGGAGGCCAGAGCCCATTGGTGCTaGGAACCCTGGAGCACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: EREEQGRFSVRSIRAEEARAHWC*EPWSTE Trigger: TTCTGTGCTCCAGGGTTCTCAGCACCAATGGGCTCT...GGCCTCCTCAGCCCTGATGCTTCTCACTGAGAAGCGTCCTTGCTCCTCACGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019074.4 |
||
| CDS-3UTR TCA 90 bp | ATTAAGAAGAGGGGCAGGAAATCTGAACGTGAGGAGCAAGGACGCTTCTCAGTGCACTCATGTACTCAGTaGCCCAGGGCTCACTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: IKKRGRKSEREEQGRFSVHSCTQ*PRAHWG Trigger: ACCCCAGTGAGCCCTGGGTCACTGAGTACATGAGTG...CACTGAGAAGCGTCCTTGCTCCTCACGTTCAGATTTCCTGCCCCTCTTCTTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019074.4 |
||
| CDS-3UTR CCA 90 bp | AAGAAGAGGGGCAGGAAATCTGAACGTGAGGAGCAAGGACGCTTCTCAGTGAGACAGGAATACCACAGCTaGCTTGGAGCAAAGACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KKRGRKSEREEQGRFSVRQEYHS*LGAKTA Trigger: AGCAGTCTTTGCTCCAAGCCAGCTGTGGTATTCCTG...TCTCACTGAGAAGCGTCCTTGCTCCTCACGTTCAGATTTCCTGCCCCTCTTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019074.4 |
||
| CDS-3UTR CCA 90 bp | GGCAGGAAATCTGAACGTGAGGAGCAAGGACGCTTCTCAGTGAGAAGCATCAGGTCTGTCTGCCTCTTTTaGTCAGGAATACCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GRKSEREEQGRFSVRSIRSVCLF*SGIPQL Trigger: CAGCTGTGGTATTCCTGACCAAAAGAGGCAGACAGA...CCTGATGCTTCTCACTGAGAAGCGTCCTTGCTCCTCACGTTCAGATTTCCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019074.4 |
||