Pregenerated sensors for CCL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000982

Ensembl transcript IDs: ENSMUST00000001008.6

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GAGTCCCTCGATGTGGCTACTTGGCAGCAAACAGCTTATAGGAGATaGAGCTATGCAGGTGGCAGGAATGTTCCGGGGCTCAAGCCCCTG	+
Preference number: 1 (lower is better) Translates to: ESLDVATWQQTAYRR*SYAGGRNVPGLKPL Trigger: CAGGGGCTTGAGCCCCGGAACATTCCTGCCACCTGCATAGCTCCATCTCCTATAAGCTGTTTGCTGCCAAGTAGCCACATCGAGGGACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
3UTR CCA 90 bp	AAATTAAATAAAATTTCAAGTGAAGAGTCCCTCGATGTGGCTACTTaGCAGCAAACAGCTTATAGGAGATGGAGCTATGCAGGTGGCAGG	+
Preference number: 1 (lower is better) Translates to: KLNKISSEESLDVAT*QQTAYRRWSYAGGR Trigger: CCTGCCACCTGCATAGCTCCATCTCCTATAAGCTGTTTGCTGCCAAGTAGCCACATCGAGGGACTCTTCACTTGAAATTTTATTTAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
3UTR-3UTR CCA 90 bp	AAGCATCTATTGTACATTTGTCAGTTCATGACTTTGTCATCATGTCTACCTAGAATGGAGCTATGCAGGTaGCAGGAATGTTCCGGGGCT	+
Preference number: 2 (lower is better) Translates to: KHLLYICQFMTLSSCLPRMELCR*QECSGA Trigger: AGCCCCGGAACATTCCTGCCACCTGCATAGCTCCAT...TCTAGGTAGACATGATGACAAAGTCATGAACTGACAAATGTACAATAGATGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
3UTR-3UTR TCA 90 bp	AAGCATCTATTGTACATTTGTCAGTTCATGACTTTGTCATCATGTCTACCTAGATGTCACCAAACAGTGTaGCCAACTGGGAGGGAGATG	+
Preference number: 2 (lower is better) Translates to: KHLLYICQFMTLSSCLPRCHQTV*PTGREM Trigger: CATCTCCCTCCCAGTTGGTCACACTGTTTGGTGACA...TCTAGGTAGACATGATGACAAAGTCATGAACTGACAAATGTACAATAGATGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
3UTR-3UTR CCA 90 bp	AAGCATCTATTGTACATTTGTCAGTTCATGACTTTGTCATCATGTCTACCTAGAACAGCTTATAGGAGATaGAGCTATGCAGGTGGCAGG	+
Preference number: 2 (lower is better) Translates to: KHLLYICQFMTLSSCLPRTAYRR*SYAGGR Trigger: CCTGCCACCTGCATAGCTCCATCTCCTATAAGCTGT...TCTAGGTAGACATGATGACAAAGTCATGAACTGACAAATGTACAATAGATGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS-3UTR CCA 90 bp	ATAGCTGTCACCAAACAGTGTGACCAACTGGGAGGGAGATGGGGGTTGAGGAACCAGGAAAATGACACCTaGCTGGGAGCAAAGGCTGCT	+
Preference number: 4 (lower is better) Translates to: IAVTKQCDQLGGRWGLRNQENDT*LGAKAA Trigger: AGCAGCCTTTGCTCCCAGCCAGGTGTCATTTTCCTG...GTTCCTCAACCCCCATCTCCCTCCCAGTTGGTCACACTGTTTGGTGACAGCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS-3UTR TCA 90 bp	ATAGCTGTCACCAAACAGTGTGACCAACTGGGAGGGAGATGGGGGTTGAGGAACTCAGTTCCAGGTCAGTaGTGTATTCTTGGACCCAGG	+
Preference number: 4 (lower is better) Translates to: IAVTKQCDQLGGRWGLRNSVPGQ*CILGPR Trigger: CCTGGGTCCAAGAATACATCACTGACCTGGAACTGA...GTTCCTCAACCCCCATCTCCCTCCCAGTTGGTCACACTGTTTGGTGACAGCTAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS-3UTR CCA 90 bp	ATAGCTGTCACCAAACAGTGTGACCAACTGGGAGGGAGATGGGGGTTGAGGAACGGGAGCAAAGGCTGCTaGTTTCAAAATAGTCAACGA	+
Preference number: 4 (lower is better) Translates to: IAVTKQCDQLGGRWGLRNGSKGC*FQNSQR Trigger: TCGTTGACTATTTTGAAACCAGCAGCCTTTGCTCCC...GTTCCTCAACCCCCATCTCCCTCCCAGTTGGTCACACTGTTTGGTGACAGCTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS-3UTR CCA 90 bp	AAGCATCTATTGTACATTTGTCAGTTCATGACTTTGTCATCATGTCTACCTAGAGGCGCTGAGAAGACTTaGTTGCAGAGTGTCATGGTA	+
Preference number: 4 (lower is better) Translates to: KHLLYICQFMTLSSCLPRGAEKT*LQSVMV Trigger: TACCATGACACTCTGCAACCAAGTCTTCTCAGCGCC...TCTAGGTAGACATGATGACAAAGTCATGAACTGACAAATGTACAATAGATGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS GCA 90 bp	AGGCAGTCGGGGTGTCAGCTCCATATGGCGCTGAGAAGACTTGGTTaGAGAGTGTCATGGTACAGAGAAGAACAGCAAGGGCAGTGGTGG	+
Preference number: 5 (lower is better) Translates to: RQSGCQLHMALRRLG*RVSWYREEQQGQWW Trigger: CCACCACTGCCCTTGCTGTTCTTCTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS CCA 90 bp	CAGCAGGCAGTCGGGGTGTCAGCTCCATATGGCGCTGAGAAGACTTaGTTGCAGAGTGTCATGGTACAGAGAAGAACAGCAAGGGCAGTG	+
Preference number: 5 (lower is better) Translates to: QQAVGVSAPYGAEKT*LQSVMVQRRTARAV Trigger: CACTGCCCTTGCTGTTCTTCTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS-3UTR CAA 90 bp	AAGCATCTATTGTACATTTGTCAGTTCATGACTTTGTCATCATGTCTACCTAGAGCTGAGAAGACTTGGTaGCAGAGTGTCATGGTACAG	+
Preference number: 5 (lower is better) Translates to: KHLLYICQFMTLSSCLPRAEKTW*QSVMVQ Trigger: CTGTACCATGACACTCTGCAACCAAGTCTTCTCAGC...TCTAGGTAGACATGATGACAAAGTCATGAACTGACAAATGTACAATAGATGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS TCA 72 bp	GCAGCAGGCAGTCGGGGTGTCAGCTCCATATGGCGCTaGGAAGACTTGGTTGCAGAGTGTCATGGTACAGAG	+
Preference number: 6 (lower is better) Translates to: AAGSRGVSSIWR*EDLVAECHGTE Trigger: CTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCTGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001008.6
CDS CAA 72 bp	GGGGTGTCAGCTCCATATGGCGCTGAGAAGACTTGGTaGCAGAGTGTCATGGTACAGAGAAGAACAGCAAGG	+
Preference number: 6 (lower is better) Translates to: GVSAPYGAEKTW*QSVMVQRRTAR Trigger: CCTTGCTGTTCTTCTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAGCGCCATATGGAGCTGACACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001008.6