Pregenerated sensors for CCL27A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073888Ensembl transcript IDs: ENSMUST00000108032.3, ENSMUST00000108036.8, ENSMUST00000108037.9, ENSMUST00000131349.8, ENSMUST00000151142.8, ENSMUST00000155240.2, ENSMUST00000155322.8, ENSMUST00000173865.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCCTTGGAGCCTTTTCCCTTGGCGTTCTAACCACCGAGCCAGGCTaGGGTTCTGGGGATGAACACAGACACTGCGCCGAGCCAGGTGAA | + |
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Preference number: 1 (lower is better) Translates to: SLGAFSLGVLTTEPG*GSGDEHRHCAEPGE Trigger: TTCACCTGGCTCGGCGCAGTGTCTGTGTTCATCCCCAGAACCGCAGCCTGGCTCGGTGGTTAGAACGCCAAGGGAAAAGGCTCCAAGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151142.8 |
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| 3UTR GCA 90 bp | GTACAGCAGCTAGTGCTGGAGGGCAGAGGCAAGGCTTCTTGCTTCTaGTTAGTCTTGTTCCACGGATGCCAGCTTCTCAGTGGGAGGCTG | + |
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Preference number: 1 (lower is better) Translates to: VQQLVLEGRGKASCF*LVLFHGCQLLSGRL Trigger: CAGCCTCCCACTGAGAAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTTGCCTCTGCCCTCCAGCACTAGCTGCTGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131349.8 ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CCA 90 bp | CTGCAGTTCCATGTGGACAATCCTCCTCAGCAGCCTGCTTGGGAGTaGCTGTCTATAGAGCTGAGTACAGCAGCTAGTGCTGGAGGGCAG | + |
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Preference number: 1 (lower is better) Translates to: LQFHVDNPPQQPAWE*LSIELSTAASAGGQ Trigger: CTGCCCTCCAGCACTAGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATGGAACTGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CCA 90 bp | GGCCTCCTGCAGTTCCATGTGGACAATCCTCCTCAGCAGCCTGCTTaGGAGTGGCTGTCTATAGAGCTGAGTACAGCAGCTAGTGCTGGA | + |
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Preference number: 1 (lower is better) Translates to: GLLQFHVDNPPQQPA*EWLSIELSTAASAG Trigger: TCCAGCACTAGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATGGAACTGCAGGAGGCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR-3UTR TCA 90 bp | CAGTCCCTTGGAGCCTTTTCCCTTGGCGTTCTAACCACCGAGCCAGGCTGCGGTACGACAGCCTGGAGGTaGCAGTCCCCATCGGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: QSLGAFSLGVLTTEPGCGTTAWR*QSPSAS Trigger: GGAGGCCGATGGGGACTGTCACCTCCAGGCTGTCGT...ACCGCAGCCTGGCTCGGTGGTTAGAACGCCAAGGGAAAAGGCTCCAAGGGACTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151142.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCCTGCTTGGGAGTGGCTGTCTATAGAGCTGAGTACAGCAGCTAGTGCTGGAATGCCAGCTTCTCAGTaGGAGGCTGGGGGCTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: QPAWEWLSIELSTAASAGMPASQ*EAGGFQ Trigger: CTGGAAGCCCCCAGCCTCCCACTGAGAAGCTGGCAT...TCCAGCACTAGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000131349.8 ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCCTTGGAGCCTTTTCCCTTGGCGTTCTAACCACCGAGCCAGGCTGCGGTTCCTGCAGTTCCATGTaGACAATCCTCCTCAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: QSLGAFSLGVLTTEPGCGSCSSM*TILLSS Trigger: GCTGCTGAGGAGGATTGTCCACATGGAACTGCAGGA...ACCGCAGCCTGGCTCGGTGGTTAGAACGCCAAGGGAAAAGGCTCCAAGGGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151142.8 |
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| 3UTR-3UTR CCA 90 bp | GACAATCCTCCTCAGCAGCCTGCTTGGGAGTGGCTGTCTATAGAGCTGAGTACAATGCCAGCTTCTCAGTaGGAGGCTGGGGGCTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: DNPPQQPAWEWLSIELSTMPASQ*EAGGFQ Trigger: CTGGAAGCCCCCAGCCTCCCACTGAGAAGCTGGCAT...TGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CAA 90 bp | GAGCTGAGTACAGCAGCTAGTGCTGGAGGGCAGAGGCAAGGCTTCTaGCTTCTGCTTAGTCTTGTTCCACGGATGCCAGCTTCTCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: ELSTAASAGGQRQGF*LLLSLVPRMPASQW Trigger: CCACTGAGAAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTTGCCTCTGCCCTCCAGCACTAGCTGCTGTACTCAGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131349.8 ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CAA 90 bp | AGCTTCTCAGTGGGAGGCTGGGGGCTTCCAGACTTAGTCTCTGGCTaGTTGGAGACATCGGACTCAAGAACAAAGTTAGGTCGTCTCGTT | + |
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Preference number: 2 (lower is better) Translates to: SFSVGGWGLPDLVSG*LETSDSRTKLGRLV Trigger: AACGAGACGACCTAACTTTGTTCTTGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTCTGGAAGCCCCCAGCCTCCCACTGAGAAGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000131349.8 ENSMUST00000155322.8 |
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| 3UTR GCA 72 bp | GAGCCAGGCTGCGGTTCTGGGGATGAACACAGACACTaGGCCGAGCCAGGTGAAGCACGACAGCCTGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: EPGCGSGDEHRH*AEPGEARQPGG Trigger: ACCTCCAGGCTGTCGTGCTTCACCTGGCTCGGCGCAGTGTCTGTGTTCATCCCCAGAACCGCAGCCTGGCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151142.8 |
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| 3UTR GCA 72 bp | GCCTTTTCCCTTGGCGTTCTAACCACCGAGCCAGGCTaGGGTTCTGGGGATGAACACAGACACTGCGCCGAG | + |
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Preference number: 3 (lower is better) Translates to: AFSLGVLTTEPG*GSGDEHRHCAE Trigger: CTCGGCGCAGTGTCTGTGTTCATCCCCAGAACCGCAGCCTGGCTCGGTGGTTAGAACGCCAAGGGAAAAGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151142.8 |
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| 3UTR GCA 72 bp | AAGGCTTCTTGCTTCTGCTTAGTCTTGTTCCACGGATaGCAGCTTCTCAGTGGGAGGCTGGGGGCTTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: KASCFCLVLFHG*QLLSGRLGASR Trigger: TCTGGAAGCCCCCAGCCTCCCACTGAGAAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000131349.8 ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR GCA 72 bp | CAGCAGCTAGTGCTGGAGGGCAGAGGCAAGGCTTCTTaGTTCTGCTTAGTCTTGTTCCACGGATGCCAGCTT | + |
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Preference number: 3 (lower is better) Translates to: QQLVLEGRGKAS*FCLVLFHGCQL Trigger: AAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTTGCCTCTGCCCTCCAGCACTAGCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131349.8 ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR GCA 72 bp | CTAGTGCTGGAGGGCAGAGGCAAGGCTTCTTGCTTCTaGTTAGTCTTGTTCCACGGATGCCAGCTTCTCAGT | + |
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Preference number: 3 (lower is better) Translates to: LVLEGRGKASCF*LVLFHGCQLLS Trigger: ACTGAGAAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTTGCCTCTGCCCTCCAGCACTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131349.8 ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CCA 72 bp | CATGTGGACAATCCTCCTCAGCAGCCTGCTTGGGAGTaGCTGTCTATAGAGCTGAGTACAGCAGCTAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: HVDNPPQQPAWE*LSIELSTAASA Trigger: AGCACTAGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CCA 72 bp | CAGTTCCATGTGGACAATCCTCCTCAGCAGCCTGCTTaGGAGTGGCTGTCTATAGAGCTGAGTACAGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: QFHVDNPPQQPA*EWLSIELSTAA Trigger: AGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATGGAACTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR-3UTR CAA 90 bp | CCATGTGGACAATCCTCCTCAGCAGCCTGCTTGGGAGTGGCTGTCTATAGAGCTGACTTAGTCTCTGGCTaGTTGGAGACATCGGACTCA | + |
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Preference number: 3 (lower is better) Translates to: PCGQSSSAACLGVAVYRADLVSG*LETSDS Trigger: TGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTC...AGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155322.8 |
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| 3UTR-3UTR CAA 90 bp | TCTATAGAGCTGAGTACAGCAGCTAGTGCTGGAGGGCAGAGGCAAGGCTTCTTGTTAGTCTCTGGCTTGTaGGAGACATCGGACTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: SIELSTAASAGGQRQGFLLVSGL*ETSDSR Trigger: TCTTGAGTCCGATGTCTCCAACAAGCCAGAGACTAA...CAAGAAGCCTTGCCTCTGCCCTCCAGCACTAGCTGCTGTACTCAGCTCTATAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131349.8 ENSMUST00000155322.8 |
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| CDS-3UTR GCA 90 bp | AGCCAGGTGAAGCACGACAGCCTGGAGGTGACAGTCCCCATCGGCCTCCTGCAGAGTCTCTCCGCTCCCTaGGCCACATTCGCAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: SQVKHDSLEVTVPIGLLQSLSAP*ATFAAK Trigger: CTTGGCTGCGAATGTGGCGCAGGGAGCGGAGAGACT...CTGCAGGAGGCCGATGGGGACTGTCACCTCCAGGCTGTCGTGCTTCACCTGGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151142.8 |
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| CDS-3UTR GCA 90 bp | GAGTGGCTGTCTATAGAGCTGAGTACAGCAGCTAGTGCTGGAGGGCAGAGGCAACCATTCTCCGCTCCCTaGGCCACATTCGCAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: EWLSIELSTAASAGGQRQPFSAP*ATFAAK Trigger: CTTGGCTGCGAATGTGGCGCAGGGAGCGGAGAATGG...TTGCCTCTGCCCTCCAGCACTAGCTGCTGTACTCAGCTCTATAGACAGCCACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131349.8 ENSMUST00000155322.8 |
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| 3UTR CAA 72 bp | GCAGTTCCATGTGGACAATCCTCCTCAGCAGCCTGCTaGGGAGTGGCTGTCTATAGAGCTGAGTACAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: AVPCGQSSSAAC*GVAVYRAEYSS Trigger: GCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATGGAACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000151142.8 ENSMUST00000155322.8 |
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| 3UTR CAA 72 bp | GTGGGAGGCTGGGGGCTTCCAGACTTAGTCTCTGGCTaGTTGGAGACATCGGACTCAAGAACAAAGTTAGGT | + |
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Preference number: 4 (lower is better) Translates to: VGGWGLPDLVSG*LETSDSRTKLG Trigger: ACCTAACTTTGTTCTTGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTCTGGAAGCCCCCAGCCTCCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000131349.8 ENSMUST00000155322.8 |
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| CDS-3UTR GCA 90 bp | TTAGTCTCTGGCTTGTTGGAGACATCGGACTCAAGAACAAAGTTAGGTCGTCTCCCATTCTCCGCTCCCTaGGCCACATTCGCAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: LVSGLLETSDSRTKLGRLPFSAP*ATFAAK Trigger: CTTGGCTGCGAATGTGGCGCAGGGAGCGGAGAATGG...GAGACGACCTAACTTTGTTCTTGAGTCCGATGTCTCCAACAAGCCAGAGACTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131349.8 ENSMUST00000155322.8 |
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| CDS GCA 90 bp | CCGCTCGACAAACAGCTCATTAGGCCCCGCAGAGGCTCCAGCTTCTaGTCCCGGGGGTGCGCCGAGCTCCGCTCCCTGCGCCACATTCGC | + |
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Preference number: 5 (lower is better) Translates to: PLDKQLIRPRRGSSF*SRGCAELRSLRHIR Trigger: GCGAATGTGGCGCAGGGAGCGGAGCTCGGCGCACCCCCGGGAGCAGAAGCTGGAGCCTCTGCGGGGCCTAATGAGCTGTTTGTCGAGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108032.3 ENSMUST00000155240.2 ENSMUST00000173865.9 |
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| CDS CCA 90 bp | GCAGCAGCGGTGGGGGTGCGACAGAGGAGACCACGACCCGAGCGCTaGGGAGCAGGCCTCAGGCCGCTCGACAAACAGCTCATTAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: AAAVGVRQRRPRPER*GAGLRPLDKQLIRP Trigger: GGGCCTAATGAGCTGTTTGTCGAGCGGCCTGAGGCCTGCTCCCCAGCGCTCGGGTCGTGGTCTCCTCTGTCGCACCCCCACCGCTGCTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108032.3 ENSMUST00000155240.2 ENSMUST00000173865.9 |
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| CDS GCA 72 bp | AAACAGCTCATTAGGCCCCGCAGAGGCTCCAGCTTCTaGTCCCGGGGGTGCGCCGAGCTCCGCTCCCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: KQLIRPRRGSSF*SRGCAELRSLR Trigger: GCGCAGGGAGCGGAGCTCGGCGCACCCCCGGGAGCAGAAGCTGGAGCCTCTGCGGGGCCTAATGAGCTGTTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108032.3 ENSMUST00000155240.2 ENSMUST00000173865.9 |
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| CDS CCA 72 bp | GTGGGGGTGCGACAGAGGAGACCACGACCCGAGCGCTaGGGAGCAGGCCTCAGGCCGCTCGACAAACAGCTC | + |
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Preference number: 6 (lower is better) Translates to: VGVRQRRPRPER*GAGLRPLDKQL Trigger: GAGCTGTTTGTCGAGCGGCCTGAGGCCTGCTCCCCAGCGCTCGGGTCGTGGTCTCCTCTGTCGCACCCCCAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108032.3 ENSMUST00000155240.2 ENSMUST00000173865.9 |
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| CDS CAA 72 bp | GTGGGAGGCTGGGGGCTTCCAGACTTAGTCTCTGGCTaGTTGGAGACATCGGACTCCGCTCCCTGCGCCACA | + |
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Preference number: 6 (lower is better) Translates to: VGGWGLPDLVSG*LETSDSAPCAT Trigger: TGTGGCGCAGGGAGCGGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTCTGGAAGCCCCCAGCCTCCCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108036.8 ENSMUST00000108037.9 |
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| CDS CAA 90 bp | AGCTTCTCAGTGGGAGGCTGGGGGCTTCCAGACTTAGTCTCTGGCTaGTTGGAGACATCGGACTCCGCTCCCTGCGCCACATTCGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SFSVGGWGLPDLVSG*LETSDSAPCATFAA Trigger: GGCTGCGAATGTGGCGCAGGGAGCGGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTCTGGAAGCCCCCAGCCTCCCACTGAGAAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108036.8 ENSMUST00000108037.9 |
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