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Pregenerated sensors for CCL26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070464

Ensembl transcript IDs: ENSMUST00000094226.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GAGATGAATCTCTGCACCCATTTGGCCCCTGGCTGGACACAGAATTaGTTACCTGTTTTTGTAAAGAATATCACACCGTCACTGGTGCAG +
Preference number: 5 (lower is better)
Translates to: EMNLCTHLAPGWTQN*LPVFVKNITPSLVQ
Trigger: CTGCACCAGTGACGGTGTGATATTCTTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CCA 90 bp GTGTTCACCAGAGAGATGAATCTCTGCACCCATTTGGCCCCTGGCTaGACACAGAATTGCTTACCTGTTTTTGTAAAGAATATCACACCG +
Preference number: 5 (lower is better)
Translates to: VFTREMNLCTHLAPG*TQNCLPVFVKNITP
Trigger: CGGTGTGATATTCTTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCTGGTGAACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CCA 90 bp CCTGGTGTTCACCAGAGAGATGAATCTCTGCACCCATTTGGCCCCTaGCTGGACACAGAATTGCTTACCTGTTTTTGTAAAGAATATCAC +
Preference number: 5 (lower is better)
Translates to: PGVHQRDESLHPFGP*LDTELLTCFCKEYH
Trigger: GTGATATTCTTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCTGGTGAACACCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CCA 72 bp ATAGCGATGCTGCTCCCACATGTGGCAACACCAAGCTaGACACTGAGGAAGATGGCCAGGAGAACAAGGAGA +
Preference number: 6 (lower is better)
Translates to: IAMLLPHVATPS*TLRKMARRTRR
Trigger: TCTCCTTGTTCTCCTGGCCATCTTCCTCAGTGTCCAGCTTGGTGTTGCCACATGTGGGAGCAGCATCGCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS GCA 72 bp AAATGGTTCCTGGTGTTCACCAGAGAGATGAATCTCTaGACCCATTTGGCCCCTGGCTGGACACAGAATTGC +
Preference number: 6 (lower is better)
Translates to: KWFLVFTREMNL*THLAPGWTQNC
Trigger: GCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCTGGTGAACACCAGGAACCATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CAA 72 bp CTGGTGTTCACCAGAGAGATGAATCTCTGCACCCATTaGGCCCCTGGCTGGACACAGAATTGCTTACCTGTT +
Preference number: 6 (lower is better)
Translates to: LVFTREMNLCTH*APGWTQNCLPV
Trigger: AACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCTGGTGAACACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS TCA 72 bp AGAATATCACACCGTCACTGGTGCAGCTCTTGTCGGTaGACTTATAGCTGTACACCCAGCTCCATGGGATCA +
Preference number: 6 (lower is better)
Translates to: RISHRHWCSSCR*TYSCTPSSMGS
Trigger: TGATCCCATGGAGCTGGGTGTACAGCTATAAGTTCACCGACAAGAGCTGCACCAGTGACGGTGTGATATTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CAA 90 bp AGAGATGAATCTCTGCACCCATTTGGCCCCTGGCTGGACACAGAATaGCTTACCTGTTTTTGTAAAGAATATCACACCGTCACTGGTGCA +
Preference number: 6 (lower is better)
Translates to: RDESLHPFGPWLDTE*LTCFCKEYHTVTGA
Trigger: TGCACCAGTGACGGTGTGATATTCTTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CCA 72 bp CACCAGAGAGATGAATCTCTGCACCCATTTGGCCCCTaGCTGGACACAGAATTGCTTACCTGTTTTTGTAAA +
Preference number: 6 (lower is better)
Translates to: HQRDESLHPFGP*LDTELLTCFCK
Trigger: TTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCTGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CAA 72 bp TCTCTGCACCCATTTGGCCCCTGGCTGGACACAGAATaGCTTACCTGTTTTTGTAAAGAATATCACACCGTC +
Preference number: 6 (lower is better)
Translates to: SLHPFGPWLDTE*LTCFCKEYHTV
Trigger: GACGGTGTGATATTCTTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2
CDS CCA 72 bp AGAGAGATGAATCTCTGCACCCATTTGGCCCCTGGCTaGACACAGAATTGCTTACCTGTTTTTGTAAAGAAT +
Preference number: 6 (lower is better)
Translates to: REMNLCTHLAPG*TQNCLPVFVKN
Trigger: ATTCTTTACAAAAACAGGTAAGCAATTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094226.2