Pregenerated sensors for CCL25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023235Ensembl transcript IDs: ENSMUST00000024004.9, ENSMUST00000069762.16, ENSMUST00000098949.11, ENSMUST00000110982.8, ENSMUST00000127460.8, ENSMUST00000136191.8, ENSMUST00000155797.8
Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCATCCTGGGATGACCTAGGGTGGCACTCCTCACGCTTGTACTGTTaGGGTTCTCCACCTTGGACTTCATATGGTTTGACTTCTTCCTTT | + |
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Preference number: 1 (lower is better) Translates to: PSWDDLGWHSSRLYC*GSPPWTSYGLTSSF Trigger: AAAGGAAGAAGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCAACAGTACAAGCGTGAGGAGTGCCACCCTAGGTCATCCCAGGATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR GCA 90 bp | TCAAATGAGGAAGATATAAACAGAAGAGCTTATGAAACCAGGGGGTaGTTTCTGGGTGGGGCTTACTCCGAGGGTGTGGCGTGCAATCCA | + |
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Preference number: 1 (lower is better) Translates to: SNEEDINRRAYETRG*FLGGAYSEGVACNP Trigger: TGGATTGCACGCCACACCCTCGGAGTAAGCCCCACCCAGAAAGCACCCCCTGGTTTCATAAGCTCTTCTGTTTATATCTTCCTCATTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR TCA 90 bp | CGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTaGGTAATTAACTTAATTGTTGGTCTTTCTGGGCATCATCACCAT | + |
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Preference number: 1 (lower is better) Translates to: RHFSRLLPSSSWCLL*VINLIVGLSGHHHH Trigger: ATGGTGATGATGCCCAGAAAGACCAACAATTAAGTTAATTACTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR CCA 90 bp | AGAACCATGGTGATCTGGGGGCAACTTTGCAGAGTCAGTGGAGCTTaGAATCAAAGTAAGGTCATCAAGTTTTGCAGCAAACTCCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: RTMVIWGQLCRVSGA*NQSKVIKFCSKLLQ Trigger: CTGAAGGAGTTTGCTGCAAAACTTGATGACCTTACTTTGATTCCAAGCTCCACTGACTCTGCAAAGTTGCCCCCAGATCACCATGGTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR CCA 90 bp | ATTGTATTTATTTGGGAGGCTGGGGACATGAGAACCATGGTGATCTaGGGGCAACTTTGCAGAGTCAGTGGAGCTTGGAATCAAAGTAAG | + |
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Preference number: 1 (lower is better) Translates to: IVFIWEAGDMRTMVI*GQLCRVSGAWNQSK Trigger: CTTACTTTGATTCCAAGCTCCACTGACTCTGCAAAGTTGCCCCCAGATCACCATGGTTCTCATGTCCCCAGCCTCCCAAATAAATACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCAACTTTGCAGAGTCAGTGGAGCTTGGAATCAAAGTAAGGTCATCAAGTCACTCCGCGGGGCAGTaGAGGGTGCTGGCCGGCTGC | + |
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Preference number: 2 (lower is better) Translates to: GGNFAESVELGIKVRSSSHSAGQ*RVLAGC Trigger: GCAGCCGGCCAGCACCCTCCACTGCCCCGCGGAGTG...ACTTGATGACCTTACTTTGATTCCAAGCTCCACTGACTCTGCAAAGTTGCCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR CCA 90 bp | GCAGCTAGCGACACGTCCTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTGGGGTGCTTTCTGGGTaGGGCTTACTCCGAGGGTGT | + |
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Preference number: 2 (lower is better) Translates to: AASDTSFLWVFLTLRTSCGVLSG*GLLRGC Trigger: ACACCCTCGGAGTAAGCCCCACCCAGAAAGCACCCC...ACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAGGACGTGTCGCTAGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR CCA 90 bp | CCTCTCGTTCCTCTCTCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACGCATCATCACCATCCTaGGATGACCTAGGGTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: PLVPLSPVNVFFLTSPSYASSPS*DDLGWH Trigger: GTGCCACCCTAGGTCATCCCAGGATGGTGATGATGC...GTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGAGAGAGGAACGAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGTTGCTTGCCTGAGCACAGGTTGGGGATTATATACTGAACTATGGGCAATTCCAATAGCTCCTTGGTaGGTGGGAGGGCCTTTAGCG | + |
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Preference number: 2 (lower is better) Translates to: RVACLSTGWGLYTELWAIPIAPW*VGGPLA Trigger: CGCTAAAGGCCCTCCCACTCACCAAGGAGCTATTGG...AATTGCCCATAGTTCAGTATATAATCCCCAACCTGTGCTCAGGCAAGCAACCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCAATCATCAATAGCCAATAGCTCCTTGGTGAGTGGGAGGGCCTTTAGCGCATTCTTCCTTTCAGTCTaGGAGTCTGAGGCGCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: QQSSIANSSLVSGRAFSAFFLSV*ESEALF Trigger: GAAGAGCGCCTCAGACTCTCAGACTGAAAGGAAGAA...TGCGCTAAAGGCCCTCCCACTCACCAAGGAGCTATTGGCTATTGATGATTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTTTAACTTTTCATCACTCGCATCCGCAGCTAGCGACACGTCCTTTCTCTGGAGCCACTGCAGCAGATaGAGTCTTCTTGTAGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: AFNFSSLASAASDTSFLWSHCSR*SLLVEG Trigger: CCCCTCTACAAGAAGACTCCATCTGCTGCAGTGGCT...CCAGAGAAAGGACGTGTCGCTAGCTGCGGATGCGAGTGATGAAAAGTTAAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR CCA 90 bp | GTCCTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTTGTATTTAATTCTACCAGGGGGTGCTTTCTaGGTGGGGCTTACTCCGAGG | + |
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Preference number: 2 (lower is better) Translates to: VLSLGIPHTPNLLLYLILPGGAF*VGLTPR Trigger: CCTCGGAGTAAGCCCCACCCAGAAAGCACCCCCTGG...TAGAATTAAATACAACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR CAA 90 bp | CGACACGTCCTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTaGTATTTAATTCTACTTAGTCGGGGTCTTTTGCCCTCTCCCACC | + |
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Preference number: 2 (lower is better) Translates to: RHVLSLGIPHTPNLL*YLILLSRGLLPSPT Trigger: GGTGGGAGAGGGCAAAAGACCCCGACTAAGTAGAATTAAATACAACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAGGACGTGTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR CAA 90 bp | TCACGCTTGTACTGTTGGGGTTCTCCACCTTGGACTTCATATGGTTaGACTTCTTCCTTTCAGTCTGAGAGTCTGAGGCGCTCTTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: SRLYCWGSPPWTSYG*TSSFQSESLRRSSS Trigger: ACTGGAAGAGCGCCTCAGACTCTCAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCAACAGTACAAGCGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | GGGGGCAACTTTGCAGAGTCAGTGGAGCTTGGAATCAAAGTAAGGTCATCAAGTTTCTGGTTTGGAATGTaGAGCCAGGATCCAGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: GGNFAESVELGIKVRSSSFWFGM*SQDPGD Trigger: GTCACCTGGATCCTGGCTTCACATTCCAAACCAGAA...ACTTGATGACCTTACTTTGATTCCAAGCTCCACTGACTCTGCAAAGTTGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR TCA 90 bp | CCTCTCTCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTTTCAGTCTGAGAGTCTaGGGCGCTCTTCCAGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: PLSPVNVFFLTSPSYQTIFSLRV*GALPVD Trigger: GTCCACTGGAAGAGCGCCTCAGACTCTCAGACTGAA...AATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGAGAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCAATCATCAATAGCCAATAGCTCCTTGGTGAGTGGGAGGGCCTTTAGCGCATTGGGGATTATATACTaGACTATGGGCAATTTACTC | + |
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Preference number: 2 (lower is better) Translates to: QQSSIANSSLVSGRAFSALGIIY*TMGNLL Trigger: GAGTAAATTGCCCATAGTTCAGTATATAATCCCCAA...TGCGCTAAAGGCCCTCCCACTCACCAAGGAGCTATTGGCTATTGATGATTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | CAACTTTGCAGAGTCAGTGGAGCTTGGAATCAAAGTAAGGTCATCAAGTTTTGCCAGTGGGGCAGTGAGTaGTACGGAATGAAAGCCATT | + |
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Preference number: 2 (lower is better) Translates to: QLCRVSGAWNQSKVIKFCQWGSE*YGMKAI Trigger: AATGGCTTTCATTCCGTATCACTCACTGCCCCACTG...GCAAAACTTGATGACCTTACTTTGATTCCAAGCTCCACTGACTCTGCAAAGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR TCA 90 bp | ACTTTCTGTTTGCTGATAGTAGATCATGTTTCACATTTGGCTTTATTGATGCTCTCCCTGTCAGCAAAGTaGTTGGTGGAAGAAGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: TFCLLIVDHVSHLALLMLSLSAK*LVEEGP Trigger: GGGGCCTTCTTCCACCAATCACTTTGCTGACAGGGA...GAGCATCAATAAAGCCAAATGTGAAACATGATCTACTATCAGCAAACAGAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATATCTTAATTAGGGTTGCTTaGCTGAGCACAGGTTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SPVNVFFLTSPSYQTIHILIRVA*LSTGWG Trigger: TCCCCAACCTGTGCTCAGGCAAGCAACCCTAATTAA...GATATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATGGACTTCATATGGTTTaGCTTCTTCCTTTCAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: LSPVNVFFLTSPSYQTIHGLHMV*LLPFSL Trigger: CAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCC...ATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATCACATTCATGTCCTCTaGATTCCCACACACTACTTT | + |
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Preference number: 2 (lower is better) Translates to: LSPVNVFFLTSPSYQTIHHIHVL*IPTHYF Trigger: AAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTG...ATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATATCTGGGGTTCTCCACCTTaGACTTCATATGGTTTGACT | + |
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Preference number: 2 (lower is better) Translates to: SPVNVFFLTSPSYQTIHIWGSPP*TSYGLT Trigger: AGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCA...GATATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR TCA 90 bp | TACGGAATGAAAGCCATTCTAACAAAACTGTTTGTAACCACAACACTGGAAAGACAGCCAGTTTTCAAATaGGGAAGATATAAACAGAAG | + |
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Preference number: 2 (lower is better) Translates to: YGMKAILTKLFVTTTLERQPVFK*GRYKQK Trigger: CTTCTGTTTATATCTTCCTCATTTGAAAACTGGCTG...TCTTTCCAGTGTTGTGGTTACAAACAGTTTTGTTAGAATGGCTTTCATTCCGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR GCA 72 bp | GGCTTACTCCGAGGGTGTGGCGTGCAATCCAGCCACTaGAGCAGATGGAGTCTTCTTGTAGAGGGGATGCAA | + |
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Preference number: 3 (lower is better) Translates to: GLLRGCGVQSSH*SRWSLLVEGMQ Trigger: TTGCATCCCCTCTACAAGAAGACTCCATCTGCTGCAGTGGCTGGATTGCACGCCACACCCTCGGAGTAAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR CCA 72 bp | TTCTGGGCATCATCACCATCCTGGGATGACCTAGGGTaGCACTCCTCACGCTTGTACTGTTGGGGTTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: FWASSPSWDDLG*HSSRLYCWGSP Trigger: TGGAGAACCCCAACAGTACAAGCGTGAGGAGTGCCACCCTAGGTCATCCCAGGATGGTGATGATGCCCAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR-3UTR CAA 90 bp | TTGTCGCTTTTAACTTTTCATCACTCGCATCCGCAGCTAGCGACACGTCCTTTCCTTAGTCGGGGTCTTTaGCCCTCTCCCACCCCCTAC | + |
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Preference number: 3 (lower is better) Translates to: LSLLTFHHSHPQLATRPFLSRGL*PSPTPY Trigger: GTAGGGGGTGGGAGAGGGCAAAAGACCCCGACTAAG...GAAAGGACGTGTCGCTAGCTGCGGATGCGAGTGATGAAAAGTTAAAAGCGACAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR CCA 72 bp | ATTTGGGAGGCTGGGGACATGAGAACCATGGTGATCTaGGGGCAACTTTGCAGAGTCAGTGGAGCTTGGAAT | + |
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Preference number: 3 (lower is better) Translates to: IWEAGDMRTMVI*GQLCRVSGAWN Trigger: ATTCCAAGCTCCACTGACTCTGCAAAGTTGCCCCCAGATCACCATGGTTCTCATGTCCCCAGCCTCCCAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR GCA 72 bp | GAAACTGTAGCTTCAGTGAGTTCATTGGCACTGGCATaGCTAGAAGACGGCACTTCAGCAGACTCCTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: ETVASVSSLALA*LEDGTSADSSH Trigger: ATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGCCAATGAACTCACTGAAGCTACAGTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 ENSMUST00000155797.8 |
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| 3UTR GCA 72 bp | CTTTCTGGCGGAAGTAGAATCTCACAGCACGTAGGTTaGAGCTTCCACTCACTTCCTGCTGGTGATAATTCC | + |
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Preference number: 3 (lower is better) Translates to: LSGGSRISQHVG*SFHSLPAGDNS Trigger: GGAATTATCACCAGCAGGAAGTGAGTGGAAGCTGCAACCTACGTGCTGTGAGATTCTACTTCCGCCAGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR TCA 72 bp | CTCCCGGTCTGGAAAGGTACACTTTCAGTGGGGCAGTaGGTGATACGGAATGAAAGCCATTCTAACAAAACT | + |
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Preference number: 3 (lower is better) Translates to: LPVWKGTLSVGQ*VIRNESHSNKT Trigger: AGTTTTGTTAGAATGGCTTTCATTCCGTATCACTCACTGCCCCACTGAAAGTGTACCTTTCCAGACCGGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR CCA 72 bp | CAAGATTCTCATCGCCCTCTTCACATTCATGTCCTCTaGATTCCCACACACTACTTTCTGGCGGAAGTAGAA | + |
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Preference number: 3 (lower is better) Translates to: QDSHRPLHIHVL*IPTHYFLAEVE Trigger: TTCTACTTCCGCCAGAAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTGAAGAGGGCGATGAGAATCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| 3UTR CCA 72 bp | GTGATCTGGGGGCAACTTTGCAGAGTCAGTGGAGCTTaGAATCAAAGTAAGGTCATCAAGTTTTGCAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: VIWGQLCRVSGA*NQSKVIKFCSK Trigger: TTTGCTGCAAAACTTGATGACCTTACTTTGATTCCAAGCTCCACTGACTCTGCAAAGTTGCCCCCAGATCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR TCA 72 bp | AATGTTCTGGTTTGGAATGTGAAGCCAGGATCCAGGTaGCAGCGTCTGTTGTCGCTTTTAACTTTTCATCAC | + |
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Preference number: 3 (lower is better) Translates to: NVLVWNVKPGSR*QRLLSLLTFHH Trigger: GTGATGAAAAGTTAAAAGCGACAACAGACGCTGTCACCTGGATCCTGGCTTCACATTCCAAACCAGAACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR TCA 72 bp | CGGTCTGGAAAGGTACACTTTCAGTGGGGCAGTGAGTaGTACGGAATGAAAGCCATTCTAACAAAACTGTTT | + |
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Preference number: 3 (lower is better) Translates to: RSGKVHFQWGSE*YGMKAILTKLF Trigger: AAACAGTTTTGTTAGAATGGCTTTCATTCCGTATCACTCACTGCCCCACTGAAAGTGTACCTTTCCAGACCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR-3UTR CAA 90 bp | ACTCCGAACCTCCTGTTGTATTTAATTCTACTTAGTCGGGGTCTTTTGCCCTCTGCAAGTCATAAAGCTTaGGTCTGTGTTTGGAGAATA | + |
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Preference number: 3 (lower is better) Translates to: TPNLLLYLILLSRGLLPSASHKA*VCVWRI Trigger: TATTCTCCAAACACAGACCAAAGCTTTATGACTTGC...AGAGGGCAAAAGACCCCGACTAAGTAGAATTAAATACAACAGGAGGTTCGGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| 3UTR GCA 72 bp | TTTTGTATGTGGCTATTGCATTTAATTAGGGTTGCTTaGCTGAGCACAGGTTGGGGATTATATACTGAACTA | + |
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Preference number: 3 (lower is better) Translates to: FCMWLLHLIRVA*LSTGWGLYTEL Trigger: TAGTTCAGTATATAATCCCCAACCTGTGCTCAGGCAAGCAACCCTAATTAAATGCAATAGCCACATACAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000155797.8 |
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| CDS-3UTR CCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTGCATCATCACCATCCTaGGATGACCTAGGGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGAASSPS*DDLGWH Trigger: GTGCCACCCTAGGTCATCCCAGGATGGTGATGATGC...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
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| CDS-3UTR CCA 90 bp | GCACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTCCTTCTGCCTCCTCATaGTCCAGTGGCAACGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: ALACLEDGTSADSSHPPAPSASS*SSGNVG Trigger: TCCTACGTTGCCACTGGACCATGAGGAGGCAGAAGG...AGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
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| CDS-3UTR GCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTGGTCCTGAGAGCTGGTaGCTGCTTGTAGCGTGTATT | + |
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Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGAGPESW*LLVACI Trigger: AATACACGCTACAAGCAGGCACCAGCTCTCAGGACC...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127460.8 |
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| CDS-3UTR CCA 90 bp | ATTGGCACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCCCTTCTGCCTCCTCATaGTCCAGTGGCAACGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: IGTGMPRRRHFSRLLPSSPSASS*SSGNVG Trigger: TCCTACGTTGCCACTGGACCATGAGGAGGCAGAAGG...GGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGCCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
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| CDS-3UTR CCA 90 bp | TCGCATCCGCAGCTAGCGACACGTCCTTTCTCTGGGTATTCCTCACACTCCGAAAGGTTCCTCGGCTTCTaGATCTGGGTGGGTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: SHPQLATRPFSGYSSHSERFLGF*IWVGEA Trigger: AGCCTCACCCACCCAGATCCAGAAGCCGAGGAACCT...TTCGGAGTGTGAGGAATACCCAGAGAAAGGACGTGTCGCTAGCTGCGGATGCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| CDS-3UTR TCA 90 bp | AAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGAGTTTCAGTCTGAGAGTCTaGGGCGCTCTTCCAGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: KTALQQTPPILQLVLTLSFSLRV*GALPVD Trigger: GTCCACTGGAAGAGCGCCTCAGACTCTCAGACTGAA...ACTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
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| CDS-3UTR TCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTTCTTCCTTTCAGTCTaGGAGTCTGAGGCGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGAFFLSV*ESEALF Trigger: GAAGAGCGCCTCAGACTCTCAGACTGAAAGGAAGAA...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
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| CDS-3UTR TCA 90 bp | CTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTTCCTCTCCAGATACCTaGAGGTTTAAGGGGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: LEDGTSADSSHPPAGAYSSSPDT*RFKGAT Trigger: GGTGGCCCCCTTAAACCTTCAGGTATCTGGAGAGGA...AGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127460.8 |
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| CDS-3UTR GCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTCACAGCACGTAGGTTaGAGCTTCCACTCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGASQHVG*SFHSLP Trigger: AGGAAGTGAGTGGAAGCTGCAACCTACGTGCTGTGA...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
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| CDS-3UTR CCA 90 bp | CTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGCATCATCACCATCCTaGGATGACCTAGGGTGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: LEDGTSADSSHPPAGAYSASSPS*DDLGWH Trigger: GTGCCACCCTAGGTCATCCCAGGATGGTGATGATGC...AGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR TCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTGGAGAACATTCCATTTaGTCCTGTGCTGGTAACCCA | + |
|
Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGAGEHSI*SCAGNP Trigger: TGGGTTACCAGCACAGGATCAAATGGAATGTTCTCC...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR TCA 90 bp | CTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGGAGAACATTCCATTTaGTCCTGTGCTGGTAACCCA | + |
|
Preference number: 4 (lower is better) Translates to: LACLEDGTSADSSHPPAGGEHSI*SCAGNP Trigger: TGGGTTACCAGCACAGGATCAAATGGAATGTTCTCC...ACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR GCA 90 bp | ATTGGCACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCTCACAGCACGTAGGTTaGAGCTTCCACTCACTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IGTGMPRRRHFSRLLPSSSQHVG*SFHSLP Trigger: AGGAAGTGAGTGGAAGCTGCAACCTACGTGCTGTGA...GGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGCCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR GCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTAGGTCCAACTTGATATaGAAATGTGCACCTCTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGARSNLI*KCAPLR Trigger: GCGGAGAGGTGCACATTTGCATATCAAGTTGGACCT...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
||
| CDS-3UTR TCA 90 bp | GCAGCTAGCGACACGTCCTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTCAGATGGAACCCACTTaGTTTTCCTTCTGCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: AASDTSFLWVFLTLRTSCQMEPT*FSFCLL Trigger: GAGGAGGCAGAAGGAAAATCAAGTGGGTTCCATCTG...ACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAGGACGTGTCGCTAGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR CCA 90 bp | CTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTTGGGGTTCTCCACCTTaGACTTCATATGGTTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: LACLEDGTSADSSHPPAGWGSPP*TSYGLT Trigger: AGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCA...ACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR CCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTAATTGTTGGTCTTTCTaGGCATCATCACCATCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGANCWSF*ASSPSW Trigger: CCAGGATGGTGATGATGCCCAGAAAGACCAACAATT...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| 3UTR CAA 72 bp | CCCTTCCCTCAGCAATCATCAATAGCCAATAGCTCCTaGGTGAGTGGGAGGGCCTTTAGCGCAGTAGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PFPQQSSIANSS*VSGRAFSAVVP Trigger: AGGAACTACTGCGCTAAAGGCCCTCCCACTCACCAAGGAGCTATTGGCTATTGATGATTGCTGAGGGAAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000155797.8 |
||
| CDS-3UTR TCA 90 bp | CTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGGACTTCATATGGTTTaGCTTCTTCCTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LACLEDGTSADSSHPPAGGLHMV*LLPFSL Trigger: CAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCC...ACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR TCA 90 bp | AGTTCATTGGCACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCAGATGGAACCCACTTaGTTTTCCTTCTGCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SSLALACLEDGTSADSSHQMEPT*FSFCLL Trigger: GAGGAGGCAGAAGGAAAATCAAGTGGGTTCCATCTG...ATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGCCAATGAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
||
| CDS-3UTR TCA 90 bp | ACTCCGAACCTCCTGTTGTATTTAATTCTACTTAGTCGGGGTCTTTTGCCCTCTCTGGATCTGGGTGGGTaGGGCTGGGTTAGGACGCTG | + |
|
Preference number: 4 (lower is better) Translates to: TPNLLLYLILLSRGLLPSLDLGG*GWVRTL Trigger: CAGCGTCCTAACCCAGCCTCACCCACCCAGATCCAG...AGAGGGCAAAAGACCCCGACTAAGTAGAATTAAATACAACAGGAGGTTCGGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR GCA 90 bp | GTGTGGCGTGCAATCCAGCCACTGCAGCAGATGGAGTCTTCTTGTAGAGGGGATAGGTCCAACTTGATATaGAAATGTGCACCTCTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: VWRAIQPLQQMESSCRGDRSNLI*KCAPLR Trigger: GCGGAGAGGTGCACATTTGCATATCAAGTTGGACCT...ATCCCCTCTACAAGAAGACTCCATCTGCTGCAGTGGCTGGATTGCACGCCACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR CCA 90 bp | GCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTCACATTCATGTCCTCTaGATTCCCACACACTACTTT | + |
|
Preference number: 4 (lower is better) Translates to: ACLEDGTSADSSHPPAGAHIHVL*IPTHYF Trigger: AAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTG...AGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR TCA 90 bp | GTAAATCCCTGTCAGCAAAGTGATTGGTGGAAGAAGGCCCCGTGCTCAAGAGTCTTCTTCCTTTCAGTCTaGGAGTCTGAGGCGCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VNPCQQSDWWKKAPCSRVFFLSV*ESEALF Trigger: GAAGAGCGCCTCAGACTCTCAGACTGAAAGGAAGAA...GACTCTTGAGCACGGGGCCTTCTTCCACCAATCACTTTGCTGACAGGGATTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| CDS-3UTR TCA 90 bp | TGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACGGACTTCATATGGTTTaGCTTCTTCCTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: CLEDGTSADSSHPPAGAYGLHMV*LLPFSL Trigger: CAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCC...GTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR CCA 90 bp | TTGTCGCTTTTAACTTTTCATCACTCGCATCCGCAGCTAGCGACACGTCCTTTCCCTTCTGCCTCCTCATaGTCCAGTGGCAACGTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LSLLTFHHSHPQLATRPFPSASS*SSGNVG Trigger: TCCTACGTTGCCACTGGACCATGAGGAGGCAGAAGG...GAAAGGACGTGTCGCTAGCTGCGGATGCGAGTGATGAAAAGTTAAAAGCGACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR GCA 90 bp | CTGTTCCTAAGAGTAAATCCCTGTCAGCAAAGTGATTGGTGGAAGAAGGCCCCGTCACAGCACGTAGGTTaGAGCTTCCACTCACTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LFLRVNPCQQSDWWKKAPSQHVG*SFHSLP Trigger: AGGAAGTGAGTGGAAGCTGCAACCTACGTGCTGTGA...CGGGGCCTTCTTCCACCAATCACTTTGCTGACAGGGATTTACTCTTAGGAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| CDS-3UTR GCA 90 bp | GAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGAGCCTTTTAAAAACCACTaGAGATGGAACCCACTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: EDGTSADSSHPPAGAYSEPFKNH*RWNPLD Trigger: ATCAAGTGGGTTCCATCTGCAGTGGTTTTTAAAAGG...CTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
||
| CDS-3UTR GCA 90 bp | ATTGGCACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCGCTTGTAGCGTGTATTaGTTTTCTTCTTGCCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: IGTGMPRRRHFSRLLPSSACSVY*FSSCPF Trigger: AAAAGGGCAAGAAGAAAAGCAATACACGCTACAAGC...GGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGCCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127460.8 |
||
| CDS-3UTR CCA 90 bp | ACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGAGTAATAATTGTTGGTCTTTCTaGGCATCATCACCATCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TALQQTPPILQLVLTLSNNCWSF*ASSPSW Trigger: CCAGGATGGTGATGATGCCCAGAAAGACCAACAATT...ATTACTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| 3UTR CAA 72 bp | CTTAGAGTTCCACACACCAGAGCAAGTCATAAAGCTTaGGTCTGTGTTTGGAGAATAGCACCAGGGGGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: LRVPHTRASHKA*VCVWRIAPGGE Trigger: CTCGCCCCCTGGTGCTATTCTCCAAACACAGACCAAAGCTTTATGACTTGCTCTGGTGTGTGGAACTCTAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR GCA 90 bp | TCGCATCCGCAGCTAGCGACACGTCCTTTCTCTGGGTATTCCTCACACTCCGAAGCTGAATCCATGAAATaGAACAGGTCCAACTTGATA | + |
|
Preference number: 4 (lower is better) Translates to: SHPQLATRPFSGYSSHSEAESMK*NRSNLI Trigger: TATCAAGTTGGACCTGTTGCATTTCATGGATTCAGC...TTCGGAGTGTGAGGAATACCCAGAGAAAGGACGTGTCGCTAGCTGCGGATGCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR GCA 90 bp | CTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGCTGAATCCATGAAATaGAACAGGTCCAACTTGATA | + |
|
Preference number: 4 (lower is better) Translates to: LEDGTSADSSHPPAGAYSAESMK*NRSNLI Trigger: TATCAAGTTGGACCTGTTGCATTTCATGGATTCAGC...AGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
||
| CDS-3UTR GCA 90 bp | GCAGCTAGCGACACGTCCTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTCCTTTTAAAAACCACTaGAGATGGAACCCACTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: AASDTSFLWVFLTLRTSCPFKNH*RWNPLD Trigger: ATCAAGTGGGTTCCATCTGCAGTGGTTTTTAAAAGG...ACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAGGACGTGTCGCTAGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR CCA 90 bp | ACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGAGTAATCACATTCATGTCCTCTaGATTCCCACACACTACTTT | + |
|
Preference number: 4 (lower is better) Translates to: TALQQTPPILQLVLTLSNHIHVL*IPTHYF Trigger: AAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTG...ATTACTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| 3UTR CAA 72 bp | TACTGTTGGGGTTCTCCACCTTGGACTTCATATGGTTaGACTTCTTCCTTTCAGTCTGAGAGTCTGAGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: YCWGSPPWTSYG*TSSFQSESLRR Trigger: GCGCCTCAGACTCTCAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCAACAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
||
| CDS-3UTR GCA 90 bp | ACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGAGTAATGCTGAATCCATGAAATaGAACAGGTCCAACTTGATA | + |
|
Preference number: 4 (lower is better) Translates to: TALQQTPPILQLVLTLSNAESMK*NRSNLI Trigger: TATCAAGTTGGACCTGTTGCATTTCATGGATTCAGC...ATTACTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
||
| CDS-3UTR TCA 90 bp | CCTCTCTCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTTTCTTCCTTTCAGTCTaGGAGTCTGAGGCGCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PLSPVNVFFLTSPSYQTIFFLSV*ESEALF Trigger: GAAGAGCGCCTCAGACTCTCAGACTGAAAGGAAGAA...AATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGAGAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024004.9 |
||
| CDS-3UTR CCA 90 bp | ACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACTCTGAGTAATACCTTGGACTTCATATaGTTTGACTTCTTCCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: TALQQTPPILQLVLTLSNTLDFI*FDFFLS Trigger: TGAAAGGAAGAAGTCAAACCATATGAAGTCCAAGGT...ATTACTCAGAGTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR TCA 90 bp | GGTATGAGAAGACACTTTCTGTTTGCTGATAGTAGATCATGTTTCACATTTGGCTTCAGTCTGAGAGTCTaGGGCGCTCTTCCAGTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: GMRRHFLFADSRSCFTFGFSLRV*GALPVD Trigger: GTCCACTGGAAGAGCGCCTCAGACTCTCAGACTGAA...GCCAAATGTGAAACATGATCTACTATCAGCAAACAGAAAGTGTCTTCTCATACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| 3UTR CAA 72 bp | CTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTaGTATTTAATTCTACTTAGTCGGGGTCTTTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LSLGIPHTPNLL*YLILLSRGLLP Trigger: GGGCAAAAGACCCCGACTAAGTAGAATTAAATACAACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR TCA 90 bp | TCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATATCCAGATGGAACCCACTTaGTTTTCCTTCTGCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SPVNVFFLTSPSYQTIHIQMEPT*FSFCLL Trigger: GAGGAGGCAGAAGGAAAATCAAGTGGGTTCCATCTG...GATATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
||
| CDS-3UTR CCA 90 bp | CCTCTCTCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTTGGGGTTCTCCACCTTaGACTTCATATGGTTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: PLSPVNVFFLTSPSYQTIWGSPP*TSYGLT Trigger: AGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCA...AATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGAGAGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024004.9 |
||
| CDS-3UTR CCA 90 bp | GGTATGAGAAGACACTTTCTGTTTGCTGATAGTAGATCATGTTTCACATTTGGCTGGGGTTCTCCACCTTaGACTTCATATGGTTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: GMRRHFLFADSRSCFTFGWGSPP*TSYGLT Trigger: AGTCAAACCATATGAAGTCCAAGGTGGAGAACCCCA...GCCAAATGTGAAACATGATCTACTATCAGCAAACAGAAAGTGTCTTCTCATACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| CDS-3UTR TCA 90 bp | ATAGTAAGTGGTATGAGAAGACACTTTCTGTTTGCTGATAGTAGATCATGTTTCGGAGAACATTCCATTTaGTCCTGTGCTGGTAACCCA | + |
|
Preference number: 4 (lower is better) Translates to: IVSGMRRHFLFADSRSCFGEHSI*SCAGNP Trigger: TGGGTTACCAGCACAGGATCAAATGGAATGTTCTCC...GAAACATGATCTACTATCAGCAAACAGAAAGTGTCTTCTCATACCACTTACTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| CDS-3UTR GCA 90 bp | TCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATATCCCTTTTAAAAACCACTaGAGATGGAACCCACTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: SPVNVFFLTSPSYQTIHIPFKNH*RWNPLD Trigger: ATCAAGTGGGTTCCATCTGCAGTGGTTTTTAAAAGG...GATATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
||
| CDS-3UTR CCA 90 bp | TTCTGTTTGCTGATAGTAGATCATGTTTCACATTTGGCTTTATTGATGCTCCCTCACATTCATGTCCTCTaGATTCCCACACACTACTTT | + |
|
Preference number: 4 (lower is better) Translates to: FCLLIVDHVSHLALLMLPHIHVL*IPTHYF Trigger: AAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTG...AGGGAGCATCAATAAAGCCAAATGTGAAACATGATCTACTATCAGCAAACAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| CDS-3UTR TCA 90 bp | ACTTTCTGTTTGCTGATAGTAGATCATGTTTCACATTTGGCTTTATTGATGCTCGGACTTCATATGGTTTaGCTTCTTCCTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TFCLLIVDHVSHLALLMLGLHMV*LLPFSL Trigger: CAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCC...GAGCATCAATAAAGCCAAATGTGAAACATGATCTACTATCAGCAAACAGAAAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| 3UTR CAA 72 bp | CAAACTATTCATATCCTTTTCTTTTGTATGTGGCTATaGCATTTAATTAGGGTTGCTTGCCTGAGCACAGGT | + |
|
Preference number: 4 (lower is better) Translates to: QTIHILFFCMWL*HLIRVACLSTG Trigger: ACCTGTGCTCAGGCAAGCAACCCTAATTAAATGCAATAGCCACATACAAAAGAAAAGGATATGAATAGTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000155797.8 |
||
| CDS-3UTR CCA 90 bp | ATAGTAAGTGGTATGAGAAGACACTTTCTGTTTGCTGATAGTAGATCATGTTTCACCTTGGACTTCATATaGTTTGACTTCTTCCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: IVSGMRRHFLFADSRSCFTLDFI*FDFFLS Trigger: TGAAAGGAAGAAGTCAAACCATATGAAGTCCAAGGT...GAAACATGATCTACTATCAGCAAACAGAAAGTGTCTTCTCATACCACTTACTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
||
| CDS GCA 90 bp | TTCCTCGGCTTCTGGATCTGGGTGGGTGAGGCTGGGTTAGGACGCTaGTCAGCGTGGCTACAGGCTTGGAGACGCAGCGTGGCAAACCAG | + |
|
Preference number: 5 (lower is better) Translates to: FLGFWIWVGEAGLGR*SAWLQAWRRSVANQ Trigger: CTGGTTTGCCACGCTGCGTCTCCAAGCCTGTAGCCACGCTGAGCAGCGTCCTAACCCAGCCTCACCCACCCAGATCCAGAAGCCGAGGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS CCA 90 bp | GTGGGTGAGGCTGGGTTAGGACGCTGCTCAGCGTGGCTACAGGCTTaGAGACGCAGCGTGGCAAACCAGAACCTATTTTCTTCTTGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: VGEAGLGRCSAWLQA*RRSVANQNLFSSCP Trigger: AGGGCAAGAAGAAAATAGGTTCTGGTTTGCCACGCTGCGTCTCCAAGCCTGTAGCCACGCTGAGCAGCGTCCTAACCCAGCCTCACCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS CCA 90 bp | TTCTGGATCTGGGTGGGTGAGGCTGGGTTAGGACGCTGCTCAGCGTaGCTACAGGCTTGGAGACGCAGCGTGGCAAACCAGAACCTATTT | + |
|
Preference number: 5 (lower is better) Translates to: FWIWVGEAGLGRCSA*LQAWRRSVANQNLF Trigger: AAATAGGTTCTGGTTTGCCACGCTGCGTCTCCAAGCCTGTAGCCACGCTGAGCAGCGTCCTAACCCAGCCTCACCCACCCAGATCCAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
||
| CDS-3UTR CAA 90 bp | TGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCTTACGTCTTCAAAGGCACCTaGGGCATGGACAACCGGCAT | + |
|
Preference number: 5 (lower is better) Translates to: CLEDGTSADSSHPPAGAYVFKGT*GMDNRH Trigger: ATGCCGGTTGTCCATGCCCAAGGTGCCTTTGAAGAC...GTAAGCACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024004.9 ENSMUST00000127460.8 |
||
| CDS-3UTR CAA 90 bp | ACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTGCAACAGGTCCAACTaGATATGCAAATGTGCACCT | + |
|
Preference number: 5 (lower is better) Translates to: TGMPRRRHFSRLLPSSSWCNRSN*ICKCAP Trigger: AGGTGCACATTTGCATATCAAGTTGGACCTGTTGCA...CCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
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| CDS-3UTR CAA 90 bp | CTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATCCTCCAGCTGGTTGCAACAGGTCCAACTaGATATGCAAATGTGCACCT | + |
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Preference number: 5 (lower is better) Translates to: LACLEDGTSADSSHPPAGCNRSN*ICKCAP Trigger: AGGTGCACATTTGCATATCAAGTTGGACCTGTTGCA...ACCAGCTGGAGGATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
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| CDS-3UTR CAA 90 bp | TGTGGCGTGCAATCCAGCCACTGCAGCAGATGGAGTCTTCTTGTAGAGGGGATGGCAGATGGAACCCACTaGATTTTCCTTCTGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: CGVQSSHCSRWSLLVEGMADGTH*IFLLPP Trigger: AGGAGGCAGAAGGAAAATCAAGTGGGTTCCATCTGC...CATCCCCTCTACAAGAAGACTCCATCTGCTGCAGTGGCTGGATTGCACGCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| CDS GCA 90 bp | CTCCTCATGGTCCAGTGGCAACGTAGGACTGCTGAATCCATGAAATaGAACAGGTCCAACTTGATATGCAAATGTGCACCTCTCCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: LLMVQWQRRTAESMK*NRSNLICKCAPLRG Trigger: GCCGCGGAGAGGTGCACATTTGCATATCAAGTTGGACCTGTTGCATTTCATGGATTCAGCAGTCCTACGTTGCCACTGGACCATGAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000069762.16 ENSMUST00000098949.11 ENSMUST00000127460.8 ENSMUST00000136191.8 ENSMUST00000155797.8 |
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| CDS-3UTR CAA 90 bp | GAAGTTCAGGGTATGACCAAAGTCCCGGGTAAGGCCCCTGTTCCTAAGAGTAAAGTCTTCAAAGGCACCTaGGGCATGGACAACCGGCAT | + |
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Preference number: 5 (lower is better) Translates to: EVQGMTKVPGKAPVPKSKVFKGT*GMDNRH Trigger: ATGCCGGTTGTCCATGCCCAAGGTGCCTTTGAAGAC...TTTACTCTTAGGAACAGGGGCCTTACCCGGGACTTTGGTCATACCCTGAACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
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| CDS-3UTR CAA 90 bp | AGTTCATTGGCACTGGCATGCCTAGAAGACGGCACTTCAGCAGACTCCTCCCATGCAGATGGAACCCACTaGATTTTCCTTCTGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: SSLALACLEDGTSADSSHADGTH*IFLLPP Trigger: AGGAGGCAGAAGGAAAATCAAGTGGGTTCCATCTGC...ATGGGAGGAGTCTGCTGAAGTGCCGTCTTCTAGGCATGCCAGTGCCAATGAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127460.8 ENSMUST00000155797.8 |
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| CDS-3UTR CAA 90 bp | TGTCAAGATTCTCATCGCCCTCTTCACATTCATGTCCTCTGGATTCCCACACACGCAGATGGAACCCACTaGATTTTCCTTCTGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: CQDSHRPLHIHVLWIPTHADGTH*IFLLPP Trigger: AGGAGGCAGAAGGAAAATCAAGTGGGTTCCATCTGC...GTGTGTGGGAATCCAGAGGACATGAATGTGAAGAGGGCGATGAGAATCTTGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155797.8 |
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| CDS-3UTR CAA 90 bp | TCTCCTGTTAATGTCTTCTTCCTAACAAGCCCCTCCTACCAAACTATTCATATCGTCTTCAAAGGCACCTaGGGCATGGACAACCGGCAT | + |
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Preference number: 5 (lower is better) Translates to: SPVNVFFLTSPSYQTIHIVFKGT*GMDNRH Trigger: ATGCCGGTTGTCCATGCCCAAGGTGCCTTTGAAGAC...GATATGAATAGTTTGGTAGGAGGGGCTTGTTAGGAAGAAGACATTAACAGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024004.9 |
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| CDS-3UTR CAA 90 bp | CAGCAATCATCAATAGCCAATAGCTCCTTGGTGAGTGGGAGGGCCTTTAGCGCATGGACTTCATATGGTTaGACTTCTTCCTTTCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: QQSSIANSSLVSGRAFSAWTSYG*TSSFQS Trigger: AGACTGAAAGGAAGAAGTCAAACCATATGAAGTCCA...TGCGCTAAAGGCCCTCCCACTCACCAAGGAGCTATTGGCTATTGATGATTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024004.9 |
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| CDS-3UTR CAA 90 bp | GTAAATCCCTGTCAGCAAAGTGATTGGTGGAAGAAGGCCCCGTGCTCAAGAGTCTGGACTTCATATGGTTaGACTTCTTCCTTTCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: VNPCQQSDWWKKAPCSRVWTSYG*TSSFQS Trigger: AGACTGAAAGGAAGAAGTCAAACCATATGAAGTCCA...GACTCTTGAGCACGGGGCCTTCTTCCACCAATCACTTTGCTGACAGGGATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110982.8 |
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| CDS-3UTR CAA 90 bp | GTCCTTTCTCTGGGTATTCCTCACACTCCGAACCTCCTGTTGTATTTAATTCTATGCAACAGGTCCAACTaGATATGCAAATGTGCACCT | + |
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Preference number: 5 (lower is better) Translates to: VLSLGIPHTPNLLLYLILCNRSN*ICKCAP Trigger: AGGTGCACATTTGCATATCAAGTTGGACCTGTTGCA...TAGAATTAAATACAACAGGAGGTTCGGAGTGTGAGGAATACCCAGAGAAAGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| CDS GCA 72 bp | TTCTGGATCTGGGTGGGTGAGGCTGGGTTAGGACGCTaGTCAGCGTGGCTACAGGCTTGGAGACGCAGCGTG | + |
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Preference number: 6 (lower is better) Translates to: FWIWVGEAGLGR*SAWLQAWRRSV Trigger: CACGCTGCGTCTCCAAGCCTGTAGCCACGCTGAGCAGCGTCCTAACCCAGCCTCACCCACCCAGATCCAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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| CDS CAA 72 bp | GTGCTGGTAACCCAGGCAGCAGTCTTCAAAGGCACCTaGGGCATGGACAACCGGCATCCAGGCCCCAACAAA | + |
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Preference number: 6 (lower is better) Translates to: VLVTQAAVFKGT*GMDNRHPGPNK Trigger: TTTGTTGGGGCCTGGATGCCGGTTGTCCATGCCCAAGGTGCCTTTGAAGACTGCTGCCTGGGTTACCAGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024004.9 ENSMUST00000110982.8 ENSMUST00000127460.8 ENSMUST00000136191.8 |
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| CDS CAA 90 bp | TTTGATCCTGTGCTGGTAACCCAGGCAGCAGTCTTCAAAGGCACCTaGGGCATGGACAACCGGCATCCAGGCCCCAACAAAACAGGCAAC | + |
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Preference number: 6 (lower is better) Translates to: FDPVLVTQAAVFKGT*GMDNRHPGPNKTGN Trigger: GTTGCCTGTTTTGTTGGGGCCTGGATGCCGGTTGTCCATGCCCAAGGTGCCTTTGAAGACTGCTGCCTGGGTTACCAGCACAGGATCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024004.9 ENSMUST00000110982.8 ENSMUST00000127460.8 ENSMUST00000136191.8 |
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| CDS GCA 72 bp | GGGGGCCACCAATGCCTTTCTGGTCCTGAGAGCTGGTaGCTGCTTGTAGCGTGTATTGCTTTTCTTCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: GGHQCLSGPESW*LLVACIAFLLA Trigger: GGCAAGAAGAAAAGCAATACACGCTACAAGCAGGCACCAGCTCTCAGGACCAGAAAGGCATTGGTGGCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127460.8 |
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| CDS CCA 72 bp | GCTGCTCAGCGTGGCTACAGGCTTGGAGACGCAGCGTaGCAAACCAGAACCTATTTTCTTCTTGCCCTTTTA | + |
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Preference number: 6 (lower is better) Translates to: AAQRGYRLGDAA*QTRTYFLLALL Trigger: TAAAAGGGCAAGAAGAAAATAGGTTCTGGTTTGCCACGCTGCGTCTCCAAGCCTGTAGCCACGCTGAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098949.11 |
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