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Pregenerated sensors for CCL24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004814

Ensembl transcript IDs: ENSMUST00000004936.10, ENSMUST00000201401.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAAGCCAGCTGCAAGCAAGGTCCGCCTGCAGAGACTCGGGGCTCATaGACCTGGGCTCTGATGAAGCCTTTGAGCCACACAAGAGATAAC +
Preference number: 1 (lower is better)
Translates to: EASCKQGPPAETRGS*TWALMKPLSHTRDN
Trigger: GTTATCTCTTGTGTGGCTCAAAGGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTGCTTGCAGCTGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR GCA 90 bp CTAAGACAAGAACCCTATGGAAGCCAGCTGCAAGCAAGGTCCGCCTaGAGAGACTCGGGGCTCATGCACCTGGGCTCTGATGAAGCCTTT +
Preference number: 1 (lower is better)
Translates to: LRQEPYGSQLQARSA*RDSGLMHLGSDEAF
Trigger: AAAGGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTGCTTGCAGCTGGCTTCCATAGGGTTCTTGTCTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 90 bp AGCTGCAAGCAAGGTCCGCCTGCAGAGACTCGGGGCTCATGCACCTaGGCTCTGATGAAGCCTTTGAGCCACACAAGAGATAACACAGGA +
Preference number: 1 (lower is better)
Translates to: SCKQGPPAETRGSCT*ALMKPLSHTRDNTG
Trigger: TCCTGTGTTATCTCTTGTGTGGCTCAAAGGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTGCTTGCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 90 bp GATCTTCTTAGGCATGCACCATCATGCCTAGTTTTTGCGGTGCTGTaGTTGAAACCCAATGCCCCATGCATGCCAGGCAAGCACACCACC +
Preference number: 1 (lower is better)
Translates to: DLLRHAPSCLVFAVL*LKPNAPCMPGKHTT
Trigger: GGTGGTGTGCTTGCCTGGCATGCATGGGGCATTGGGTTTCAACCACAGCACCGCAAAAACTAGGCATGATGGTGCATGCCTAAGAAGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR TCA 90 bp CTGTGTGGCTATGTAGCCTTGAACTTATTTTTAGGGAAGGGTGTTTaGGAAATGGTCTCTCTATGTAGCCCTGGCTGTCCTGGAGCTCGC +
Preference number: 1 (lower is better)
Translates to: LCGYVALNLFLGKGV*EMVSLCSPGCPGAR
Trigger: GCGAGCTCCAGGACAGCCAGGGCTACATAGAGAGACCATTTCTCAAACACCCTTCCCTAAAAATAAGTTCAAGGCTACATAGCCACACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 90 bp AAGAGGAGGCAGACCCTGGGCCAGGCTGGCCTCAAATTTTCTGTGTaGCTATGTAGCCTTGAACTTATTTTTAGGGAAGGGTGTTTGAGA +
Preference number: 1 (lower is better)
Translates to: KRRQTLGQAGLKFSV*LCSLELIFREGCLR
Trigger: TCTCAAACACCCTTCCCTAAAAATAAGTTCAAGGCTACATAGCCACACAGAAAATTTGAGGCCAGCCTGGCCCAGGGTCTGCCTCCTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 90 bp ATTCTTCTGGAATCTTTTCACTCAGCACAGGAGACACCAGAACTCTaGCATGCTTGCAGCTCACTCAGGTTCTCACAGAATAAACACATC +
Preference number: 1 (lower is better)
Translates to: ILLESFHSAQETPEL*HACSSLRFSQNKHI
Trigger: GATGTGTTTATTCTGTGAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAAGATTCCAGAAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CAA 90 bp CCTGCAGAGACTCGGGGCTCATGCACCTGGGCTCTGATGAAGCCTTaGAGCCACACAAGAGATAACACAGGACAACTGATATTCTTCTGG +
Preference number: 2 (lower is better)
Translates to: PAETRGSCTWALMKP*SHTRDNTGQLIFFW
Trigger: CCAGAAGAATATCAGTTGTCCTGTGTTATCTCTTGTGTGGCTCAAAGGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR-3UTR GCA 90 bp TGGGCCAGGCTGGCCTCAAATTTTCTGTGTGGCTATGTAGCCTTGAACTTATTTAGGCATGCACCATCATaGCTAGTTTTTGCGGTGCTG +
Preference number: 2 (lower is better)
Translates to: WARLASNFLCGYVALNLFRHAPS*LVFAVL
Trigger: CAGCACCGCAAAAACTAGGCATGATGGTGCATGCCT...AAATAAGTTCAAGGCTACATAGCCACACAGAAAATTTGAGGCCAGCCTGGCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR-3UTR TCA 90 bp TCCGGCTTTACAAAGACTGATGGGTTTAAAAATGCTGCTGTTGAAATCCTCCGTGGGAGTTACTGCTGTTaGCAGATCTTCACCCAGAGA +
Preference number: 2 (lower is better)
Translates to: SGFTKTDGFKNAAVEILRGSYCC*QIFTQR
Trigger: TCTCTGGGTGAAGATCTGTCAACAGCAGTAACTCCC...ACGGAGGATTTCAACAGCAGCATTTTTAAACCCATCAGTCTTTGTAAAGCCGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR GCA 72 bp GAACCCTATGGAAGCCAGCTGCAAGCAAGGTCCGCCTaGAGAGACTCGGGGCTCATGCACCTGGGCTCTGAT +
Preference number: 3 (lower is better)
Translates to: EPYGSQLQARSA*RDSGLMHLGSD
Trigger: ATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTGCTTGCAGCTGGCTTCCATAGGGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 72 bp CAAGGTCCGCCTGCAGAGACTCGGGGCTCATGCACCTaGGCTCTGATGAAGCCTTTGAGCCACACAAGAGAT +
Preference number: 3 (lower is better)
Translates to: QGPPAETRGSCT*ALMKPLSHTRD
Trigger: ATCTCTTGTGTGGCTCAAAGGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR GCA 72 bp ATGCCTAGTTTTTGCGGTGCTGTGGTTGAAACCCAATaGCCCATGCATGCCAGGCAAGCACACCACCATCTG +
Preference number: 3 (lower is better)
Translates to: MPSFCGAVVETQ*PMHARQAHHHL
Trigger: CAGATGGTGGTGTGCTTGCCTGGCATGCATGGGGCATTGGGTTTCAACCACAGCACCGCAAAAACTAGGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 72 bp AGGCATGCACCATCATGCCTAGTTTTTGCGGTGCTGTaGTTGAAACCCAATGCCCCATGCATGCCAGGCAAG +
Preference number: 3 (lower is better)
Translates to: RHAPSCLVFAVL*LKPNAPCMPGK
Trigger: CTTGCCTGGCATGCATGGGGCATTGGGTTTCAACCACAGCACCGCAAAAACTAGGCATGATGGTGCATGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR GCA 72 bp CACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTaGAGCTCACTCAGGTTCTCACAGAATAAACACATC +
Preference number: 3 (lower is better)
Translates to: HSAQETPELWHA*SSLRFSQNKHI
Trigger: GATGTGTTTATTCTGTGAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
3UTR GCA 72 bp AGGGTGGCATTGAACTCACAGAGATCCTCTTGCCTCTaGCTTCTGGGATGTCTGGCTAAGCTTGAAATTCTG +
Preference number: 3 (lower is better)
Translates to: RVALNSQRSSCL*LLGCLAKLEIL
Trigger: CAGAATTTCAAGCTTAGCCAGACATCCCAGAAGGCAGAGGCAAGAGGATCTCTGTGAGTTCAATGCCACCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 72 bp CAGACCCTGGGCCAGGCTGGCCTCAAATTTTCTGTGTaGCTATGTAGCCTTGAACTTATTTTTAGGGAAGGG +
Preference number: 3 (lower is better)
Translates to: QTLGQAGLKFSV*LCSLELIFREG
Trigger: CCCTTCCCTAAAAATAAGTTCAAGGCTACATAGCCACACAGAAAATTTGAGGCCAGCCTGGCCCAGGGTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR TCA 72 bp GGTATACCCATCAGCATGTTTGGGAGTTACTGCTGTTaGCAGATCTTCACCCAGAGATGGACAGACAGACAG +
Preference number: 3 (lower is better)
Translates to: GIPISMFGSYCC*QIFTQRWTDRQ
Trigger: CTGTCTGTCTGTCCATCTCTGGGTGAAGATCTGTCAACAGCAGTAACTCCCAAACATGCTGATGGGTATACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 72 bp GAATCTTTTCACTCAGCACAGGAGACACCAGAACTCTaGCATGCTTGCAGCTCACTCAGGTTCTCACAGAAT +
Preference number: 3 (lower is better)
Translates to: ESFHSAQETPEL*HACSSLRFSQN
Trigger: ATTCTGTGAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAAGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
3UTR CCA 72 bp TTTTATCTGTTCCAAGTTCTGGGGATGGGACCAGCCTaGTATACCCATCAGCATGTTTGGGAGTTACTGCTG +
Preference number: 3 (lower is better)
Translates to: FYLFQVLGMGPA*YTHQHVWELLL
Trigger: CAGCAGTAACTCCCAAACATGCTGATGGGTATACCAGGCTGGTCCCATCCCCAGAACTTGGAACAGATAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR-3UTR CAA 90 bp CTGGGCCAGGCTGGCCTCAAATTTTCTGTGTGGCTATGTAGCCTTGAACTTATTTTTAGGGAAGGGTGTTaGAGAAATGGTCTCTCTATG +
Preference number: 3 (lower is better)
Translates to: LGQAGLKFSVWLCSLELIFREGC*RNGLSM
Trigger: CATAGAGAGACCATTTCTCAAACACCCTTCCCTAAA...AATAAGTTCAAGGCTACATAGCCACACAGAAAATTTGAGGCCAGCCTGGCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
3UTR CCA 72 bp CACACAAGAGATAACACAGGACAACTGATATTCTTCTaGAATCTTTTCACTCAGCACAGGAGACACCAGAAC +
Preference number: 3 (lower is better)
Translates to: HTRDNTGQLIFF*NLFTQHRRHQN
Trigger: GTTCTGGTGTCTCCTGTGCTGAGTGAAAAGATTCCAGAAGAATATCAGTTGTCCTGTGTTATCTCTTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
CDS-3UTR GCA 90 bp GCAAGGTCCGCCTGCAGAGACTCGGGGCTCATGCACCTGGGCTCTGATGAAGCCGATGAAGATGACCCCTaGCTTGGGACAGATGCTGCC +
Preference number: 4 (lower is better)
Translates to: ARSACRDSGLMHLGSDEADEDDP*LGTDAA
Trigger: GGCAGCATCTGTCCCAAGGCAGGGGTCATCTTCATC...GGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
CDS-3UTR TCA 90 bp CTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCACTCAGGTTCTCGGACGTGCAGCAAGATaGGGGGATGGTCACAGAATC +
Preference number: 4 (lower is better)
Translates to: LSTGDTRTLACLQLTQVLGRAAR*GDGHRI
Trigger: GATTCTGTGACCATCCCCTCATCTTGCTGCACGTCC...GAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CCA 90 bp CACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCACTCAGGTTCTCTGGACAGCAAACTTaGTTCTCACTGCCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: HSAQETPELWHACSSLRFSGQQT*FSLPWP
Trigger: GGGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGA...GAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR TCA 90 bp TCTTTTCACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCACTCGGACGTGCAGCAAGATaGGGGGATGGTCACAGAATC +
Preference number: 4 (lower is better)
Translates to: SFHSAQETPELWHACSSLGRAAR*GDGHRI
Trigger: GATTCTGTGACCATCCCCTCATCTTGCTGCACGTCC...GAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR GCA 90 bp CACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCACTCAGGTTCAATCTATGGGGAAGATaGAACACGCGCAGGCTACCA +
Preference number: 4 (lower is better)
Translates to: HSAQETPELWHACSSLRFNLWGR*NTRRLP
Trigger: TGGTAGCCTGCGCGTGTTGCATCTTCCCCATAGATT...GAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR GCA 90 bp CTTTTCACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCACTCAGATGAAGATGACCCCTaGCTTGGGACAGATGCTGCC +
Preference number: 4 (lower is better)
Translates to: LFTQHRRHQNSGMLAAHSDEDDP*LGTDAA
Trigger: GGCAGCATCTGTCCCAAGGCAGGGGTCATCTTCATC...TGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR GCA 90 bp TTTTCACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCACTCAGAATCTATGGGGAAGATaGAACACGCGCAGGCTACCA +
Preference number: 4 (lower is better)
Translates to: FSLSTGDTRTLACLQLTQNLWGR*NTRRLP
Trigger: TGGTAGCCTGCGCGTGTTGCATCTTCCCCATAGATT...CTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CCA 90 bp CAGCCTGGTAAAGCGTCAATACCTATGTCCAAGTTCAGGGACAGAGGAGAGGCGAGCAAGATGAGGGGATaGTCACAGAATCTATGGGGA +
Preference number: 4 (lower is better)
Translates to: QPGKASIPMSKFRDRGEASKMRG*SQNLWG
Trigger: TCCCCATAGATTCTGTGACCATCCCCTCATCTTGCT...CGCCTCTCCTCTGTCCCTGAACTTGGACATAGGTATTGACGCTTTACCAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
CDS-3UTR GCA 90 bp GGAATCTTTTCACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCAAACTTGGTTCTCACTaGCTTGGCCCCTTTAGAAGG +
Preference number: 4 (lower is better)
Translates to: GIFSLSTGDTRTLACLQLKLGSH*LGPFRR
Trigger: CCTTCTAAAGGGGCCAAGGCAGTGAGAACCAAGTTT...GAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAAGATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CCA 90 bp CACCAGAACTCTGGCATGCTTGCAGCTCACTCAGGTTCTCACAGAATAAACACATTGCCACGGCGTCTCTaGACAGCAAACTTGGTTCTC +
Preference number: 4 (lower is better)
Translates to: HQNSGMLAAHSGSHRINTLPRRL*TANLVL
Trigger: GAGAACCAAGTTTGCTGTCCAGAGACGCCGTGGCAA...TGTGTTTATTCTGTGAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CCA 90 bp CCAGAACTCTGGCATGCTTGCAGCTCACTCAGGTTCTCACAGAATAAACACATCAGCAAGATGAGGGGATaGTCACAGAATCTATGGGGA +
Preference number: 4 (lower is better)
Translates to: PELWHACSSLRFSQNKHISKMRG*SQNLWG
Trigger: TCCCCATAGATTCTGTGACCATCCCCTCATCTTGCT...GATGTGTTTATTCTGTGAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CCA 90 bp GTTACACCTCCGGCTTTACAAAGACTGATGGGTTTAAAAATGCTGCTGTTGAAATCTGGACAGCAAACTTaGTTCTCACTGCCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: VTPPALQRLMGLKMLLLKSGQQT*FSLPWP
Trigger: GGGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGA...TTTCAACAGCAGCATTTTTAAACCCATCAGTCTTTGTAAAGCCGGAGGTGTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
CDS-3UTR CAA 90 bp CAAGGTCCGCCTGCAGAGACTCGGGGCTCATGCACCTGGGCTCTGATGAAGCCTCTCTGGACAGCAAACTaGGTTCTCACTGCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: QGPPAETRGSCTWALMKPLWTAN*VLTALA
Trigger: GGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGAG...AGGCTTCATCAGAGCCCAGGTGCATGAGCCCCGAGTCTCTGCAGGCGGACCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
CDS GCA 90 bp GTCAGTACAGATCTTATGGCCCTTCTTGGTGATGAAGATGACCCCTaGCTTGGGACAGATGCTGCCGTTGGCCAACTGGTAGCTAACCAC +
Preference number: 5 (lower is better)
Translates to: VSTDLMALLGDEDDP*LGTDAAVGQLVANH
Trigger: GTGGTTAGCTACCAGTTGGCCAACGGCAGCATCTGTCCCAAGGCAGGGGTCATCTTCATCACCAAGAAGGGCCATAAGATCTGTACTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CAA 90 bp GGAATCTTTTCACTCAGCACAGGAGACACCAGAACTCTGGCATGCTTGCAGCTCCTCTGGACAGCAAACTaGGTTCTCACTGCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: GIFSLSTGDTRTLACLQLLWTAN*VLTALA
Trigger: GGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGAG...GAGCTGCAAGCATGCCAGAGTTCTGGTGTCTCCTGTGCTGAGTGAAAAGATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS-3UTR CAA 90 bp CAGCCTGGTAAAGCGTCAATACCTATGTCCAAGTTCAGGGACAGAGGAGAGGCGGAAGGCTGGTTTTTCTaGGCATCCAGTTTTTGTATG +
Preference number: 5 (lower is better)
Translates to: QPGKASIPMSKFRDRGEAEGWFF*ASSFCM
Trigger: CATACAAAAACTGGATGCCAAGAAAAACCAGCCTTC...CGCCTCTCCTCTGTCCCTGAACTTGGACATAGGTATTGACGCTTTACCAGGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000004936.10
CDS-3UTR CAA 90 bp ACACCAGAACTCTGGCATGCTTGCAGCTCACTCAGGTTCTCACAGAATAAACACGAAGGCTGGTTTTTCTaGGCATCCAGTTTTTGTATG +
Preference number: 5 (lower is better)
Translates to: TPELWHACSSLRFSQNKHEGWFF*ASSFCM
Trigger: CATACAAAAACTGGATGCCAAGAAAAACCAGCCTTC...GTGTTTATTCTGTGAGAACCTGAGTGAGCTGCAAGCATGCCAGAGTTCTGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS GCA 72 bp AAGATGAGGGGATGGTCACAGAATCTATGGGGAAGATaGAACACGCGCAGGCTACCAGGAGAAGGAGGCCGG +
Preference number: 6 (lower is better)
Translates to: KMRGWSQNLWGR*NTRRLPGEGGR
Trigger: CCGGCCTCCTTCTCCTGGTAGCCTGCGCGTGTTGCATCTTCCCCATAGATTCTGTGACCATCCCCTCATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS CAA 72 bp TCGGTGCTATTGCCACGGCGTCTCTGGACAGCAAACTaGGTTCTCACTGCCTTGGCCCCTTTAGAAGGCTGG +
Preference number: 6 (lower is better)
Translates to: SVLLPRRLWTAN*VLTALAPLEGW
Trigger: CCAGCCTTCTAAAGGGGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGAGACGCCGTGGCAATAGCACCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS GCA 72 bp GCCACGGCGTCTCTGGACAGCAAACTTGGTTCTCACTaGCTTGGCCCCTTTAGAAGGCTGGTTTTTCTTGGC +
Preference number: 6 (lower is better)
Translates to: ATASLDSKLGSH*LGPFRRLVFLG
Trigger: GCCAAGAAAAACCAGCCTTCTAAAGGGGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGAGACGCCGTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS GCA 72 bp GATCTTATGGCCCTTCTTGGTGATGAAGATGACCCCTaGCTTGGGACAGATGCTGCCGTTGGCCAACTGGTA +
Preference number: 6 (lower is better)
Translates to: DLMALLGDEDDP*LGTDAAVGQLV
Trigger: TACCAGTTGGCCAACGGCAGCATCTGTCCCAAGGCAGGGGTCATCTTCATCACCAAGAAGGGCCATAAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS CAA 72 bp CGGCGTCTCTGGACAGCAAACTTGGTTCTCACTGCCTaGGCCCCTTTAGAAGGCTGGTTTTTCTTGGCATCC +
Preference number: 6 (lower is better)
Translates to: RRLWTANLVLTA*APLEGWFFLAS
Trigger: GGATGCCAAGAAAAACCAGCCTTCTAAAGGGGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGAGACGCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2
CDS CAA 72 bp AGCAGCTTGGGGTCAGTACAGATCTTATGGCCCTTCTaGGTGATGAAGATGACCCCTGCCTTGGGACAGATG +
Preference number: 6 (lower is better)
Translates to: SSLGSVQILWPF*VMKMTPALGQM
Trigger: CATCTGTCCCAAGGCAGGGGTCATCTTCATCACCAAGAAGGGCCATAAGATCTGTACTGACCCCAAGCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004936.10
ENSMUST00000201401.2