Pregenerated sensors for CCL22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031779Ensembl transcript IDs: ENSMUST00000034231.4
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCCAGAAGTAGGAGAGGAGGGGGAGGGACCTTCAGGACATGCATaGGCAGTGAGCAAAGTAGCACTAGTGGTGGCCCTGGTCGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: FPEVGEEGEGPSGHA*AVSKVALVVALVVQ Trigger: CTGGACGACCAGGGCCACCACTAGTGCTACTTTGCTCACTGCCCATGCATGTCCTGAAGGTCCCTCCCCCTCCTCTCCTACTTCTGGGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 90 bp | AGGTGCTCCTTCTGGCAGAACACGAGCCCTGGACACAGCTGTGGCTaGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTGGTCC | + |
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Preference number: 1 (lower is better) Translates to: RCSFWQNTSPGHSCG*HCQSLWFGSSPLWS Trigger: GGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCTGTGTCCAGGGCTCGTGTTCTGCCAGAAGGAGCACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 90 bp | GTCCAGGTGCTCCTTCTGGCAGAACACGAGCCCTGGACACAGCTGTaGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTG | + |
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Preference number: 1 (lower is better) Translates to: VQVLLLAEHEPWTQL*LALSIPVVWIKPFV Trigger: CACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCTGTGTCCAGGGCTCGTGTTCTGCCAGAAGGAGCACCTGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 90 bp | GCAGCTCCTTTAAGAAATCTGATTCTGAGCCTGCTCCTTGCTCCCTaGCCCGTGCTGCAGACCAAGAAACAGGAGGAGCTCTGGTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: AAPLRNLILSLLLAP*PVLQTKKQEELWWG Trigger: TCCCCACCAGAGCTCCTCCTGTTTCTTGGTCTGCAGCACGGGGCAGGGAGCAAGGAGCAGGCTCAGAATCAGATTTCTTAAAGGAGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 90 bp | GGAGTCTGCAGCTCCTTTAAGAAATCTGATTCTGAGCCTGCTCCTTaGTCCCTGCCCCGTGCTGCAGACCAAGAAACAGGAGGAGCTCTG | + |
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Preference number: 1 (lower is better) Translates to: GVCSSFKKSDSEPAP*SLPRAADQETGGAL Trigger: CAGAGCTCCTCCTGTTTCTTGGTCTGCAGCACGGGGCAGGGAGCAAGGAGCAGGCTCAGAATCAGATTTCTTAAAGGAGCTGCAGACTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 90 bp | TATTTTCCCAGAAGTAGGAGAGGAGGGGGAGGGACCTTCAGGACATaGATGGGCAGTGAGCAAAGTAGCACTAGTGGTGGCCCTGGTCGT | + |
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Preference number: 1 (lower is better) Translates to: YFPRSRRGGGGTFRT*MGSEQSSTSGGPGR Trigger: ACGACCAGGGCCACCACTAGTGCTACTTTGCTCACTGCCCATGCATGTCCTGAAGGTCCCTCCCCCTCCTCTCCTACTTCTGGGAAAATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 90 bp | CTGAGAGTAGGTGGAGGCCAAGGAAGTCTGAAGTTTGGGGCTTGGTaGATGCCCACTGGGACTGATAGAAACTTGGGAGGTGTGTGGCAC | + |
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Preference number: 1 (lower is better) Translates to: LRVGGGQGSLKFGAW*MPTGTDRNLGGVWH Trigger: GTGCCACACACCTCCCAAGTTTCTATCAGTCCCAGTGGGCATCCACCAAGCCCCAAACTTCAGACTTCCTTGGCCTCCACCTACTCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 90 bp | AACACGAGCCCTGGACACAGCTGTGGCTGGCACTGTCAATCCCTGTaGTTTGGATCAAGCCCTTTGTGGTCCCATATGCTGTCAGCTGAG | + |
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Preference number: 1 (lower is better) Translates to: NTSPGHSCGWHCQSL*FGSSPLWSHMLSAE Trigger: CTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCTGTGTCCAGGGCTCGTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 90 bp | TGTGGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTaGTCCCATATGCTGTCAGCTGAGGCTCAGAGAGGAAAAGCGATG | + |
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Preference number: 1 (lower is better) Translates to: CGWHCQSLWFGSSPL*SHMLSAEAQRGKAM Trigger: CATCGCTTTTCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 90 bp | ACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTGGTCCCATATaGTGTCAGCTGAGGCTCAGAGAGGAAAAGCGATGCCCCCAATCT | + |
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Preference number: 1 (lower is better) Translates to: TVNPCGLDQALCGPI*CQLRLREEKRCPQS Trigger: AGATTGGGGGCATCGCTTTTCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 90 bp | CCCCAGCCACTAAGGAAAGCCACCAATGACACATGGCACAATAGGTaGACATCCCATTTCCCACCATCCCACAAACCTTCCTTTTCCATG | + |
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Preference number: 1 (lower is better) Translates to: PQPLRKATNDTWHNR*TSHFPPSHKPSFSM Trigger: CATGGAAAAGGAAGGTTTGTGGGATGGTGGGAAATGGGATGTGCACCTATTGTGCCATGTGTCATTGGTGGCTTTCCTTAGTGGCTGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 90 bp | TTATTCCTTCCCCTGGGACCACTGTTGTCTCCAGGGAAGCAAGAATaGGTTCTATATTCTTGTCTTGGCCTCAGCCACTCAAGAATAATT | + |
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Preference number: 1 (lower is better) Translates to: LFLPLGPLLSPGKQE*VLYSCLGLSHSRII Trigger: AATTATTCTTGAGTGGCTGAGGCCAAGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAACAGTGGTCCCAGGGGAAGGAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 90 bp | CTTATATTCAGGGATGGGAGAAAGATTCCTTTTACTGATGGAGTCTaGAGCTCCTTTAAGAAATCTGATTCTGAGCCTGCTCCTTGCTCC | + |
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Preference number: 1 (lower is better) Translates to: LIFRDGRKIPFTDGV*SSFKKSDSEPAPCS Trigger: GGAGCAAGGAGCAGGCTCAGAATCAGATTTCTTAAAGGAGCTGCAGACTCCATCAGTAAAAGGAATCTTTCTCCCATCCCTGAATATAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | CCCGTGCTGCAGACCAAGAAACAGGAGGAGCTCTGGTGGGGACCTTGGCCTAACGGCCAAGGCTGGGGATaGGGAAGGCATCATAGGATC | + |
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Preference number: 2 (lower is better) Translates to: PVLQTKKQEELWWGPWPNGQGWG*GRHHRI Trigger: GATCCTATGATGCCTTCCCCATCCCCAGCCTTGGCC...GTTAGGCCAAGGTCCCCACCAGAGCTCCTCCTGTTTCTTGGTCTGCAGCACGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 90 bp | CGAGCCCTGGACACAGCTGTGGCTGGCACTGTCAATCCCTGTGGTTaGGATCAAGCCCTTTGTGGTCCCATATGCTGTCAGCTGAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: RALDTAVAGTVNPCG*DQALCGPICCQLRL Trigger: GAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCTGTGTCCAGGGCTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR TCA 90 bp | CCCTGGAGGAGGGCAGGTCTGGGTAAAGGAAGGCCCCGTTCTATTTCACAGCAATCCCAGCTGCCACATTaGAGGGGGATAAGCTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: PWRRAGLGKGRPRSISQQSQLPH*RGISWK Trigger: CTTCCAGCTTATCCCCCTTCAATGTGGCAGCTGGGA...TTGCTGTGAAATAGAACGGGGCCTTCCTTTACCCAGACCTGCCCTCCTCCAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR GCA 90 bp | CCCGTGCTGCAGACCAAGAAACAGGAGGAGCTCTGGTGGGGACCTTGGCCTAACGTGGCACTGGATAGGTaGCTGCAGCAGGAAAAACAT | + |
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Preference number: 2 (lower is better) Translates to: PVLQTKKQEELWWGPWPNVALDR*LQQEKH Trigger: ATGTTTTTCCTGCTGCAGGCACCTATCCAGTGCCAC...GTTAGGCCAAGGTCCCCACCAGAGCTCCTCCTGTTTCTTGGTCTGCAGCACGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAGGGGGAGGGACCTTCAGGACATGCATGGGCAGTGAGCAAAGTAGCACTCCTGGTGGACCAGCCTaGAACTCCCAGAATTCTACT | + |
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Preference number: 2 (lower is better) Translates to: RGGGGTFRTCMGSEQSSTPGGPA*NSQNST Trigger: AGTAGAATTCTGGGAGTTTCAGGCTGGTCCACCAGG...AGTGCTACTTTGCTCACTGCCCATGCATGTCCTGAAGGTCCCTCCCCCTCCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR GCA 90 bp | AGCATAACTTCGACTATCAGCTACACAGGCAAGGAGTCAAAGGTGTGGGGCAGACTGCTCCTTGCTCCCTaGCCCGTGCTGCAGACCAAG | + |
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Preference number: 2 (lower is better) Translates to: SITSTISYTGKESKVWGRLLLAP*PVLQTK Trigger: CTTGGTCTGCAGCACGGGGCAGGGAGCAAGGAGCAG...TCTGCCCCACACCTTTGACTCCTTGCCTGTGTAGCTGATAGTCGAAGTTATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | TATGGCCCTTCCTGCCCCCAGATCCTAAAACTCTCCAGTTCGTCTATTTGGCCTGAAGGGGGCCAAGGCTaGGGATGGGGAAGGCATCAT | + |
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Preference number: 2 (lower is better) Translates to: YGPSCPQILKLSSSSIWPEGGQG*GWGRHH Trigger: ATGATGCCTTCCCCATCCCCAGCCTTGGCCCCCTTC...AGGCCAAATAGACGAACTGGAGAGTTTTAGGATCTGGGGGCAGGAAGGGCCATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 90 bp | AGCTGTGGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTaGTGGTCCCATATGCTGTCAGCTGAGGCTCAGAGAGGAAAAGCG | + |
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Preference number: 2 (lower is better) Translates to: SCGWHCQSLWFGSSP*WSHMLSAEAQRGKA Trigger: CGCTTTTCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR GCA 90 bp | ATCCCATTTCCCACCATCCCACAAACCTTCCTTTTCCATGGAGGGGTCAGACCCTGGGCCTTCCCTACATaGAAGAAGAGAAGGGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: IPFPTIPQTFLFHGGVRPWAFPT*KKRRGP Trigger: TGGCCCCCTTCTCTTCTTGCATGTAGGGAAGGCCCA...GGGTCTGACCCCTCCATGGAAAAGGAAGGTTTGTGGGATGGTGGGAAATGGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | AGAGGAGGGGGAGGGACCTTCAGGACATGCATGGGCAGTGAGCAAAGTAGCACTGTTTATTCCTTCCCCTaGGACCACTGTTGTCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: RGGGGTFRTCMGSEQSSTVYSFP*DHCCLQ Trigger: CTGGAGACAACAGTGGTCCCAGGGGAAGGAATAAAC...AGTGCTACTTTGCTCACTGCCCATGCATGTCCTGAAGGTCCCTCCCCCTCCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGTCTGGGTAAAGGAAGGCCCCGTTCTATTTCACAGCAACACAGAGGACAAGCCCTGGACACAGCTGTaGCTGGCACTGTCAATCCCT | + |
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Preference number: 2 (lower is better) Translates to: QVWVKEGPVLFHSNTEDKPWTQL*LALSIP Trigger: AGGGATTGACAGTGCCAGCCACAGCTGTGTCCAGGG...CTTGTCCTCTGTGTTGCTGTGAAATAGAACGGGGCCTTCCTTTACCCAGACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | GAAGGCCCCGTTCTATTTCACAGCAACACAGAGGACAAGGACCCAAGTCAGGTATCCAGGTGCTCCTTCTaGCAGAACACGAGCCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: EGPVLFHSNTEDKDPSQVSRCSF*QNTSPG Trigger: TCCAGGGCTCGTGTTCTGCCAGAAGGAGCACCTGGA...TACCTGACTTGGGTCCTTGTCCTCTGTGTTGCTGTGAAATAGAACGGGGCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR GCA 90 bp | AGCATAACTTCGACTATCAGCTACACAGGCAAGGAGTCAAAGGTGTGGGGCAGATTGCTCCCTGCCCCGTaGTGCAGACCAAGAAACAGG | + |
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Preference number: 2 (lower is better) Translates to: SITSTISYTGKESKVWGRLLPAP*CRPRNR Trigger: CCTGTTTCTTGGTCTGCAGCACGGGGCAGGGAGCAA...TCTGCCCCACACCTTTGACTCCTTGCCTGTGTAGCTGATAGTCGAAGTTATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR GCA 90 bp | ATCCCATTTCCCACCATCCCACAAACCTTCCTTTTCCATGGAGGGGTCAGACCCCACTGGATAGGTGCCTaGAGCAGGAAAAACATGCTG | + |
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Preference number: 2 (lower is better) Translates to: IPFPTIPQTFLFHGGVRPHWIGA*SRKNML Trigger: CAGCATGTTTTTCCTGCTGCAGGCACCTATCCAGTG...GGGTCTGACCCCTCCATGGAAAAGGAAGGTTTGTGGGATGGTGGGAAATGGGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | GGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTGGTCCCATATGAGGTATCACTTTGTATaGCCCTTCCTGCCCCCAGAT | + |
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Preference number: 2 (lower is better) Translates to: GWHCQSLWFGSSPLWSHMRYHFV*PFLPPD Trigger: ATCTGGGGGCAGGAAGGGCCATACAAAGTGATACCT...CATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGTCTGGGTAAAGGAAGGCCCCGTTCTATTTCACAGCAACACAGAGGACAAGAGGCTCTTGCTGGAATaGCAGAAGAATAGGGCTTGC | + |
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Preference number: 2 (lower is better) Translates to: QVWVKEGPVLFHSNTEDKRLLLE*QKNRAC Trigger: GCAAGCCCTATTCTTCTGCCATTCCAGCAAGAGCCT...CTTGTCCTCTGTGTTGCTGTGAAATAGAACGGGGCCTTCCTTTACCCAGACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 90 bp | CCTCCAGAGGAGCAAGAAGGTTTATTCCTTCCCCTGGGACCACTGTaGTCTCCAGGGAAGCAAGAATGGGTTCTATATTCTTGTCTTGGC | + |
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Preference number: 2 (lower is better) Translates to: PPEEQEGLFLPLGPL*SPGKQEWVLYSCLG Trigger: GCCAAGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAACAGTGGTCCCAGGGGAAGGAATAAACCTTCTTGCTCCTCTGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR TCA 90 bp | TCAAGCCCTTTGTGGTCCCATATGCTGTCAGCTGAGGCTCAGAGAGGAAAAGCGCCTGAGTCTCTGTGTTaGCAGAAAACTGCCTTATAT | + |
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Preference number: 2 (lower is better) Translates to: SSPLWSHMLSAEAQRGKAPESLC*QKTALY Trigger: ATATAAGGCAGTTTTCTGTCAACACAGAGACTCAGG...CGCTTTTCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGTCTGGGTAAAGGAAGGCCCCGTTCTATTTCACAGCAACACAGAGGACAAGGTGGTTGAAGAGGGGTaGAAGTTGATTCTTGGTAAA | + |
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Preference number: 2 (lower is better) Translates to: QVWVKEGPVLFHSNTEDKVVEEG*KLILGK Trigger: TTTACCAAGAATCAACTTCCACCCCTCTTCAACCAC...CTTGTCCTCTGTGTTGCTGTGAAATAGAACGGGGCCTTCCTTTACCCAGACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | CCACTGTTGTCTCCAGGGAAGCAAGAATGGGTTCTATATTCTTGTCTTGGCCTCAAAGACCCTAGCATGTaGTTGAAGAGGGGTGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: PLLSPGKQEWVLYSCLGLKDPSM*LKRGGS Trigger: ACTTCCACCCCTCTTCAACCACATGCTAGGGTCTTT...GAGGCCAAGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAACAGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CCA 90 bp | GATCCTAAAACTCTCCAGTTCGTCTATTTGGCCTCACATATATTTATCCTCTTTCAGGAGGAGCTCTGGTaGGGACCTTGGCCTAACCCT | + |
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Preference number: 2 (lower is better) Translates to: DPKTLQFVYLASHIFILFQEELW*GPWPNP Trigger: AGGGTTAGGCCAAGGTCCCCACCAGAGCTCCTCCTG...AAAGAGGATAAATATATGTGAGGCCAAATAGACGAACTGGAGAGTTTTAGGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR TCA 90 bp | CTGGGACCACTGTTGTCTCCAGGGAAGCAAGAATGGGTTCTATATTCTTGTCTTAAAGATTCCTTTTACTaGTGGAGTCTGCAGCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: LGPLLSPGKQEWVLYSCLKDSFY*WSLQLL Trigger: AAGGAGCTGCAGACTCCATCAGTAAAAGGAATCTTT...AAGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAACAGTGGTCCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR TCA 90 bp | CCTGGGACCACTGTTGTCTCCAGGGAAGCAAGAATGGGTTCTATATTCTTGTCTCAACCATCTATTTTCTaGGGTATCACTTTGTATGGC | + |
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Preference number: 2 (lower is better) Translates to: PGTTVVSREARMGSIFLSQPSIF*GITLYG Trigger: GCCATACAAAGTGATACCTCAGAAAATAGATGGTTG...AGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAACAGTGGTCCCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 90 bp | GAAGAGGGGTGGAAGTTGATTCTTGGTAAATTTAGGGTTTCACAGTaGATCTATGTGGCCATTTCTAACAACCTGAGTCTCTGTGTTGAC | + |
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Preference number: 2 (lower is better) Translates to: EEGWKLILGKFRVSQ*IYVAISNNLSLCVD Trigger: GTCAACACAGAGACTCAGGTTGTTAGAAATGGCCACATAGATCAACTGTGAAACCCTAAATTTACCAAGAATCAACTTCCACCCCTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR TCA 90 bp | GATCCTAAAACTCTCCAGTTCGTCTATTTGGCCTCACATATATTTATCCTCTTTTTAGGGTTTCACAGTTaGTCTATGTGGCCATTTCTA | + |
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Preference number: 2 (lower is better) Translates to: DPKTLQFVYLASHIFILFLGFHS*SMWPFL Trigger: TAGAAATGGCCACATAGATCAACTGTGAAACCCTAA...AAAGAGGATAAATATATGTGAGGCCAAATAGACGAACTGGAGAGTTTTAGGATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | GTGCTGCAGACCAAGAAACAGGAGGAGCTCTGGTGGGGACCTTGGCCTAACCCTGTAAAGGTGGCGTCGTaGGCAAGGCTCTTGCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: VLQTKKQEELWWGPWPNPVKVAS*ARLLLE Trigger: TTCCAGCAAGAGCCTTGCCAACGACGCCACCTTTAC...AGGGTTAGGCCAAGGTCCCCACCAGAGCTCCTCCTGTTTCTTGGTCTGCAGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | AGAGGAGGGGGAGGGACCTTCAGGACATGCATGGGCAGTGAGCAAAGTAGCACTTCTGAAGTTTGGGGCTaGGTGGATGCCCACTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: RGGGGTFRTCMGSEQSSTSEVWG*VDAHWD Trigger: GTCCCAGTGGGCATCCACCAAGCCCCAAACTTCAGA...AGTGCTACTTTGCTCACTGCCCATGCATGTCCTGAAGGTCCCTCCCCCTCCTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | GGTGGAGGCCAAGGAAGTCTGAAGTTTGGGGCTTGGTGGATGCCCACTGGGACTTTCCCAGCTGCCACATaGAAGGGGGATAAGCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: GGGQGSLKFGAWWMPTGTFPAAT*KGDKLE Trigger: TTCCAGCTTATCCCCCTTCAATGTGGCAGCTGGGAA...AGTCCCAGTGGGCATCCACCAAGCCCCAAACTTCAGACTTCCTTGGCCTCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 72 bp | AGAAGTAGGAGAGGAGGGGGAGGGACCTTCAGGACATaGATGGGCAGTGAGCAAAGTAGCACTAGTGGTGGC | + |
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Preference number: 3 (lower is better) Translates to: RSRRGGGGTFRT*MGSEQSSTSGG Trigger: GCCACCACTAGTGCTACTTTGCTCACTGCCCATGCATGTCCTGAAGGTCCCTCCCCCTCCTCTCCTACTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 72 bp | TGGAATGGCAGAAGAATAGGGCTTGCTGAGCCTCCCTaGACCACACCAGACCCATGGTCATCAGGTCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: WNGRRIGLAEPP*TTPDPWSSGPP Trigger: AGGAGGACCTGATGACCATGGGTCTGGTGTGGTCCAGGGAGGCTCAGCAAGCCCTATTCTTCTGCCATTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 72 bp | GGGGGCCGTGTTCCAGCCCCAACAAGCAGCAGAACTTaGCAGCTCCAGGCACATGGTTCTAGCTTTAGAATC | + |
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Preference number: 3 (lower is better) Translates to: GGRVPAPTSSRT*QLQAHGSSFRI Trigger: GATTCTAAAGCTAGAACCATGTGCCTGGAGCTGCCAAGTTCTGCTGCTTGTTGGGGCTGGAACACGGCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | GGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTGGTCCCATATGCCCCTGGGACCACTGTaGTCTCCAGGGAAGCAAGAA | + |
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Preference number: 3 (lower is better) Translates to: GWHCQSLWFGSSPLWSHMPLGPL*SPGKQE Trigger: TTCTTGCTTCCCTGGAGACAACAGTGGTCCCAGGGG...CATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 72 bp | GGTGGAGGCCAAGGAAGTCTGAAGTTTGGGGCTTGGTaGATGCCCACTGGGACTGATAGAAACTTGGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: GGGQGSLKFGAW*MPTGTDRNLGG Trigger: ACCTCCCAAGTTTCTATCAGTCCCAGTGGGCATCCACCAAGCCCCAAACTTCAGACTTCCTTGGCCTCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 72 bp | CCTGGACACAGCTGTGGCTGGCACTGTCAATCCCTGTaGTTTGGATCAAGCCCTTTGTGGTCCCATATGCTG | + |
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Preference number: 3 (lower is better) Translates to: PGHSCGWHCQSL*FGSSPLWSHML Trigger: CAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCTGTGTCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR TCA 72 bp | TGCCACTGGCAGCAGCTCCCACAACCATCTATTTTCTaGGGTATCACTTTGTATGGCCCTTCCTGCCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: CHWQQLPQPSIF*GITLYGPSCPQ Trigger: CTGGGGGCAGGAAGGGCCATACAAAGTGATACCTCAGAAAATAGATGGTTGTGGGAGCTGCTGCCAGTGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR TCA 72 bp | TGGATCAAGCCCTTTGTGGTCCCATATGCTGTCAGCTaGGGCTCAGAGAGGAAAAGCGATGCCCCCAATCTC | + |
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Preference number: 3 (lower is better) Translates to: WIKPFVVPYAVS*GSERKSDAPNL Trigger: GAGATTGGGGGCATCGCTTTTCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 72 bp | TTAAGAAATCTGATTCTGAGCCTGCTCCTTGCTCCCTaGCCCGTGCTGCAGACCAAGAAACAGGAGGAGCTC | + |
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Preference number: 3 (lower is better) Translates to: LRNLILSLLLAP*PVLQTKKQEEL Trigger: GAGCTCCTCCTGTTTCTTGGTCTGCAGCACGGGGCAGGGAGCAAGGAGCAGGCTCAGAATCAGATTTCTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 72 bp | CCCTGTGGTTTGGATCAAGCCCTTTGTGGTCCCATATaGTGTCAGCTGAGGCTCAGAGAGGAAAAGCGATGC | + |
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Preference number: 3 (lower is better) Translates to: PCGLDQALCGPI*CQLRLREEKRC Trigger: GCATCGCTTTTCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 72 bp | GTAGGTGGAGGCCAAGGAAGTCTGAAGTTTGGGGCTTaGTGGATGCCCACTGGGACTGATAGAAACTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: VGGGQGSLKFGA*WMPTGTDRNLG Trigger: TCCCAAGTTTCTATCAGTCCCAGTGGGCATCCACCAAGCCCCAAACTTCAGACTTCCTTGGCCTCCACCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 72 bp | AGAAACTTGGGAGGTGTGTGGCACTGGATAGGTGCCTaGAGCAGGAAAAACATGCTGGGTATTAGAACCCCC | + |
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Preference number: 3 (lower is better) Translates to: RNLGGVWHWIGA*SRKNMLGIRTP Trigger: GGGGGTTCTAATACCCAGCATGTTTTTCCTGCTGCAGGCACCTATCCAGTGCCACACACCTCCCAAGTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CCA 72 bp | CACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTaGTCCCATATGCTGTCAGCTGAGGCTCAGAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: HCQSLWFGSSPL*SHMLSAEAQRG Trigger: TCCTCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | ATCCCATTTCCCACCATCCCACAAACCTTCCTTTTCCATGGAGGGGTCAGACCCTCGTTGGCAAGGCTCTaGCTGGAATGGCAGAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: IPFPTIPQTFLFHGGVRPSLARL*LEWQKN Trigger: ATTCTTCTGCCATTCCAGCAAGAGCCTTGCCAACGA...GGGTCTGACCCCTCCATGGAAAAGGAAGGTTTGTGGGATGGTGGGAAATGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR GCA 72 bp | CTAAGGAAAGCCACCAATGACACATGGCACAATAGGTaGACATCCCATTTCCCACCATCCCACAAACCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LRKATNDTWHNR*TSHFPPSHKPS Trigger: GGAAGGTTTGTGGGATGGTGGGAAATGGGATGTGCACCTATTGTGCCATGTGTCATTGGTGGCTTTCCTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | AGGTATTATTGGCGAGCATTTATTTTCCCAGAAGTAGGAGAGGAGGGGGAGGGATTTAGGGTTTCACAGTaGATCTATGTGGCCATTTCT | + |
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Preference number: 3 (lower is better) Translates to: RYYWRAFIFPEVGEEGEGFRVSQ*IYVAIS Trigger: AGAAATGGCCACATAGATCAACTGTGAAACCCTAAA...TCCCTCCCCCTCCTCTCCTACTTCTGGGAAAATAAATGCTCGCCAATAATACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR-3UTR CAA 90 bp | GATCCTAAAACTCTCCAGTTCGTCTATTTGGCCTCACATATATTTATCCTCTTTGAAGAGGGGTGGAAGTaGATTCTTGGTAAATTTAGG | + |
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Preference number: 3 (lower is better) Translates to: DPKTLQFVYLASHIFILFEEGWK*ILGKFR Trigger: CCTAAATTTACCAAGAATCAACTTCCACCCCTCTTC...AAAGAGGATAAATATATGTGAGGCCAAATAGACGAACTGGAGAGTTTTAGGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR CCA 90 bp | CCCTGGAGGAGGGCAGGTCTGGGTAAAGGAAGGCCCCGTTCTATTTCACAGCAAGAGAGCCACCAGGAGTaGGACACGCAGGGTAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: PWRRAGLGKGRPRSISQQESHQE*DTQGSH Trigger: ATGGCTACCCTGCGTGTCCCACTCCTGGTGGCTCTC...TTGCTGTGAAATAGAACGGGGCCTTCCTTTACCCAGACCTGCCCTCCTCCAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR CCA 90 bp | CCAGAGCCTCACAGAGTGACAGCCCAGGGGATGGAGGTGAGTAAAGGTGGCGTCTACTGTCTTCCACATTaGCACCATAGGGACCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: PEPHRVTAQGMEVSKGGVYCLPH*HHRDLH Trigger: ATGCAGGTCCCTATGGTGCCAATGTGGAAGACAGTA...GACGCCACCTTTACTCACCTCCATCCCCTGGGCTGTCACTCTGTGAGGCTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 72 bp | GACACAGCTGTGGCTGGCACTGTCAATCCCTGTGGTTaGGATCAAGCCCTTTGTGGTCCCATATGCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: DTAVAGTVNPCG*DQALCGPICCQ Trigger: CTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCCACAGCTGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR GCA 90 bp | GGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTGGTCCCATATGTTCTTCACCCAGACCTaGCTGGGATCGGCACAGATA | + |
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Preference number: 4 (lower is better) Translates to: GWHCQSLWFGSSPLWSHMFFTQT*LGSAQI Trigger: TATCTGTGCCGATCCCAGGCAGGTCTGGGTGAAGAA...CATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 72 bp | TGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTaGTGGTCCCATATGCTGTCAGCTGAGGCTCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: WHCQSLWFGSSP*WSHMLSAEAQR Trigger: TCTCTGAGCCTCAGCTGACAGCATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR GCA 90 bp | GGCTGGCACTGTCAATCCCTGTGGTTTGGATCAAGCCCTTTGTGGTCCCATATGATCAGAGGTCTGAATTaGCACAGCAAGAAGGACGAG | + |
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Preference number: 4 (lower is better) Translates to: GWHCQSLWFGSSPLWSHMIRGLN*HSKKDE Trigger: CTCGTCCTTCTTGCTGTGGCAATTCAGACCTCTGAT...CATATGGGACCACAAAGGGCTTGATCCAAACCACAGGGATTGACAGTGCCAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR TCA 90 bp | AGCATAACTTCGACTATCAGCTACACAGGCAAGGAGTCAAAGGTGTGGGGCAGACTTGCGGCAGGATTTTaGGGTCCAGAAGAACTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SITSTISYTGKESKVWGRLAAGF*GPEELL Trigger: AAGGAGTTCTTCTGGACCTCAAAATCCTGCCGCAAG...TCTGCCCCACACCTTTGACTCCTTGCCTGTGTAGCTGATAGTCGAAGTTATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR GCA 90 bp | ATGGGAGAAAGATTCCTTTTACTGATGGAGTCTGCAGCTCCTTTAAGAAATCTGGGCACCATAGGGACCTaGATCAGAGGTCTGAATTGC | + |
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Preference number: 4 (lower is better) Translates to: MGERFLLLMESAAPLRNLGTIGT*IRGLNC Trigger: GCAATTCAGACCTCTGATGCAGGTCCCTATGGTGCC...CAGATTTCTTAAAGGAGCTGCAGACTCCATCAGTAAAAGGAATCTTTCTCCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 72 bp | AGCAACACAGAGGACAAGGACCCAAGTCAGGTATTATaGGCGAGCATTTATTTTCCCAGAAGTAGGAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SNTEDKDPSQVL*ASIYFPRSRRG Trigger: TCCTCTCCTACTTCTGGGAAAATAAATGCTCGCCAATAATACCTGACTTGGGTCCTTGTCCTCTGTGTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR GCA 90 bp | CAGATCCTAAAACTCTCCAGTTCGTCTATTTGGCCTCACATATATTTATCCTCTAAACAACGCCAGGCTTaGGGCAGGATTTTGAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QILKLSSSSIWPHIYLSSKQRQA*GRILRS Trigger: GGACCTCAAAATCCTGCCGCAAGCCTGGCGTTGTTT...AGAGGATAAATATATGTGAGGCCAAATAGACGAACTGGAGAGTTTTAGGATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 72 bp | GTTGTCTCCAGGGAAGCAAGAATGGGTTCTATATTCTaGTCTTGGCCTCAGCCACTCAAGAATAATTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: VVSREARMGSIF*SWPQPLKNNFN Trigger: ATTGAAATTATTCTTGAGTGGCTGAGGCCAAGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| 3UTR CAA 72 bp | TGGAAGTTGATTCTTGGTAAATTTAGGGTTTCACAGTaGATCTATGTGGCCATTTCTAACAACCTGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: WKLILGKFRVSQ*IYVAISNNLSL Trigger: GAGACTCAGGTTGTTAGAAATGGCCACATAGATCAACTGTGAAACCCTAAATTTACCAAGAATCAACTTCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS-3UTR CAA 90 bp | GGACCACTGTTGTCTCCAGGGAAGCAAGAATGGGTTCTATATTCTTGTCTTGGCCATCAGAGGTCTGAATaGCCACAGCAAGAAGGACGA | + |
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Preference number: 5 (lower is better) Translates to: GPLLSPGKQEWVLYSCLGHQRSE*PQQEGR Trigger: TCGTCCTTCTTGCTGTGGCAATTCAGACCTCTGATG...GCCAAGACAAGAATATAGAACCCATTCTTGCTTCCCTGGAGACAACAGTGGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS CAA 90 bp | TGTCTTCCACATTGGCACCATAGGGACCTGCATCAGAGGTCTGAATaGCCACAGCAAGAAGGACGAGAGCCACCAGGAGTGGGACACGCA | + |
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Preference number: 6 (lower is better) Translates to: CLPHWHHRDLHQRSE*PQQEGREPPGVGHA Trigger: TGCGTGTCCCACTCCTGGTGGCTCTCGTCCTTCTTGCTGTGGCAATTCAGACCTCTGATGCAGGTCCCTATGGTGCCAATGTGGAAGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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| CDS CCA 72 bp | GGATGTAGTCCTGGCAGCAGATACTGTCTTCCACATTaGCACCATAGGGACCTGCATCAGAGGTCTGAATTG | + |
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Preference number: 6 (lower is better) Translates to: GCSPGSRYCLPH*HHRDLHQRSEL Trigger: CAATTCAGACCTCTGATGCAGGTCCCTATGGTGCCAATGTGGAAGACAGTATCTGCTGCCAGGACTACATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034231.4 |
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