Pregenerated sensors for CCL21D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094065

Ensembl transcript IDs: ENSMUST00000098128.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CAGCTCCGCCAGGTAAGAAAGGGATGGCCGTGCAGATGTAATGGTTaGAGCAGGGCAAGGGTGTGGACGGAGGCCAGCATGAGGTGGCTG	+
Preference number: 1 (lower is better) Translates to: QLRQVRKGWPCRCNG*SRARVWTEASMRWL Trigger: CAGCCACCTCATGCTGGCCTCCGTCCACACCCTTGCCCTGCTTCAACCATTACATCTGCACGGCCATCCCTTTCTTACCTGGCGGAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098128.4
3UTR TCA 90 bp	GATGTAATGGTTGAAGCAGGGCAAGGGTGTGGACGGAGGCCAGCATaGGGTGGCTGCTTTGGGCTCCTGAGTCTGTTTTCTAGCTCCCTC	+
Preference number: 1 (lower is better) Translates to: DVMVEAGQGCGRRPA*GGCFGLLSLFSSSL Trigger: GAGGGAGCTAGAAAACAGACTCAGGAGCCCAAAGCAGCCACCTCATGCTGGCCTCCGTCCACACCCTTGCCCTGCTTCAACCATTACATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098128.4
3UTR CCA 72 bp	CAAGGGGAGGGCGCCATGGAGAGCAGGTTCAGGTCTTaGGACCTGAGTGACCTCCTAGAGGGGACAGTCCTG	+
Preference number: 3 (lower is better) Translates to: QGEGAMESRFRS*DLSDLLEGTVL Trigger: CAGGACTGTCCCCTCTAGGAGGTCACTCAGGTCCCAAGACCTGAACCTGCTCTCCATGGCGCCCTCCCCTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098128.4
3UTR TCA 72 bp	CAGGTAAGAAAGGGATGGCCGTGCAGATGTAATGGTTaGAGCAGGGCAAGGGTGTGGACGGAGGCCAGCATG	+
Preference number: 3 (lower is better) Translates to: QVRKGWPCRCNG*SRARVWTEASM Trigger: CATGCTGGCCTCCGTCCACACCCTTGCCCTGCTTCAACCATTACATCTGCACGGCCATCCCTTTCTTACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098128.4
3UTR TCA 72 bp	TCTCCTTCCTCATTCCCTGGGAGACACTCTTTCTTCTaGCTCTCTAGGTCTACCCCAGGGAAGGCAGCTCCG	+
Preference number: 3 (lower is better) Translates to: SPSSFPGRHSFF*LSRSTPGKAAP Trigger: CGGAGCTGCCTTCCCTGGGGTAGACCTAGAGAGTCAGAAGAAAGAGTGTCTCCCAGGGAATGAGGAAGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098128.4
CDS CAA 90 bp	GCTTCCGGGGTAAGAACAGGATTGCCGGGATGGGACAGCCTAAACTaGGTTCTTGCTTCCTATAGCCTCGGACAATACTGTAGGGAATTT	+
Preference number: 6 (lower is better) Translates to: ASGVRTGLPGWDSLN*VLASYSLGQYCREF Trigger: AAATTCCCTACAGTATTGTCCGAGGCTATAGGAAGCAAGAACCAAGTTTAGGCTGTCCCATCCCGGCAATCCTGTTCTTACCCCGGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098128.4

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