Pregenerated sensors for CCL21B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095675Ensembl transcript IDs: ENSMUST00000178864.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCCCAGGGAAGGCAGCTCCGCCAGGTAAGAAAGGGATGGCCGTGCAGATGTAATTCGTGGGGGATCTCCTaGGCTCCAGGCGGGCTACTG | + |
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Preference number: 2 (lower is better) Translates to: PQGRQLRQVRKGWPCRCNSWGIS*APGGLL Trigger: CAGTAGCCCGCCTGGAGCCCAGGAGATCCCCCACGA...ATTACATCTGCACGGCCATCCCTTTCTTACCTGGCGGAGCTGCCTTCCCTGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| 3UTR-3UTR CCA 90 bp | GACACTCTTTCTTCTGACTCTCTAGGTCTACCCCAGGGAAGGCAGCTCCGCCAGGAGGCCAGCATGAGGTaGCTGCTTTGGGCTCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: DTLSSDSLGLPQGRQLRQEASMR*LLWAPE Trigger: CTCAGGAGCCCAAAGCAGCCACCTCATGCTGGCCTC...CTGGCGGAGCTGCCTTCCCTGGGGTAGACCTAGAGAGTCAGAAGAAAGAGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| 3UTR-3UTR CCA 90 bp | ATCATAGGTGCAAGGACAAGGGGAGGGCGCCATGGAGAGCAGGTTCAGGTCTTGATGAGGTGGCTGCTTTaGGCTCCTGAGTCTGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: IIGARTRGGRHGEQVQVLMRWLL*APESVF Trigger: GAAAACAGACTCAGGAGCCCAAAGCAGCCACCTCAT...CAAGACCTGAACCTGCTCTCCATGGCGCCCTCCCCTTGTCCTTGCACCTATGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGGTATAAATCATAGGTGCAAGGACAAGGGGAGGGCGCCATGGAGAGCAGGTTCCTTCCTCATTCCCTaGGAGACACTCTTTCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LGINHRCKDKGRAPWRAGSFLIP*ETLFLL Trigger: CAGAAGAAAGAGTGTCTCCCAGGGAATGAGGAAGGA...ACCTGCTCTCCATGGCGCCCTCCCCTTGTCCTTGCACCTATGATTTATACCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| CDS-3UTR GCA 90 bp | CTAGGTCTACCCCAGGGAAGGCAGCTCCGCCAGGTAAGAAAGGGATGGCCGTGCCTTGGGTCCAGGGGATaGAGAGAGCCAGGACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LGLPQGRQLRQVRKGWPCLGSRG*REPGPG Trigger: GCCTGGTCCTGGCTCTCTGCATCCCCTGGACCCAAG...GCACGGCCATCCCTTTCTTACCTGGCGGAGCTGCCTTCCCTGGGGTAGACCTAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| CDS-3UTR GCA 90 bp | GTGTGGACGGAGGCCAGCATGAGGTGGCTGCTTTGGGCTCCTGAGTCTGTTTTCCGGCGCATCAGGTTCTaGACCCAGCCTTCCTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: VWTEASMRWLLWAPESVFRRIRF*TQPSSG Trigger: CCCTGAGGAAGGCTGGGTGCAGAACCTGATGCGCCG...GAAAACAGACTCAGGAGCCCAAAGCAGCCACCTCATGCTGGCCTCCGTCCACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| CDS-3UTR GCA 90 bp | GGGCTCCTGAGTCTGTTTTCTAGCTCCCTCTTTGCCTGTGAGTTGGACCGTGAATTCCCCGGTTCTTCCTaGAGCCGGGGCTTTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GLLSLFSSSLFACELDREFPGSS*SRGFVS Trigger: GGAAACAAAGCCCCGGCTGCAGGAAGAACCGGGGAA...TTCACGGTCCAACTCACAGGCAAAGAGGGAGCTAGAAAACAGACTCAGGAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| 3UTR CAA 72 bp | CTGAGTCTGTTTTCTAGCTCCCTCTTTGCCTGTGAGTaGGACCGTGAACCACCCAGCTTGAAGTTCGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: LSLFSSSLFACE*DREPPSLKFVG Trigger: CCCCACGAACTTCAAGCTGGGTGGTTCACGGTCCAACTCACAGGCAAAGAGGGAGCTAGAAAACAGACTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| CDS GCA 90 bp | TGCACCCAGCCTTCCTCAGGGTTTGCACATAGCTCAGGCTTAGAGTaGTTCCGGGGTAAGAACAGGATTGCCGGGATGGGACAGCCTAAA | + |
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Preference number: 5 (lower is better) Translates to: CTQPSSGFAHSSGLE*FRGKNRIAGMGQPK Trigger: TTTAGGCTGTCCCATCCCGGCAATCCTGTTCTTACCCCGGAAGCACTCTAAGCCTGAGCTATGTGCAAACCCTGAGGAAGGCTGGGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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| CDS CAA 72 bp | GTAAGAACAGGATTGCCGGGATGGGACAGCCTAAACTaGGTTCTTGCTTCCTATAGCCTCGGACAATACTGT | + |
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Preference number: 6 (lower is better) Translates to: VRTGLPGWDSLN*VLASYSLGQYC Trigger: ACAGTATTGTCCGAGGCTATAGGAAGCAAGAACCAAGTTTAGGCTGTCCCATCCCGGCAATCCTGTTCTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178864.3 |
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