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Pregenerated sensors for CCL21A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094686

Ensembl transcript IDs: ENSMUST00000095114.5

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCTCCGCCAGGTAAGAAAGGGATGGCCGTGCAGATGTGATGGTTaGAGCAGGGCAAGGGTGTGGACGGAGGCCAGCATGAGGTGGCTG +
Preference number: 1 (lower is better)
Translates to: QLRQVRKGWPCRCDG*SRARVWTEASMRWL
Trigger: CAGCCACCTCATGCTGGCCTCCGTCCACACCCTTGCCCTGCTTCAACCATCACATCTGCACGGCCATCCCTTTCTTACCTGGCGGAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
3UTR TCA 90 bp AAGGGTGTGGACGGAGGCCAGCATGAGGTGGCTGCTTTGGGCTCCTaGGTCTGTTTTCTAGCTCCCTCTTTGCCTGTGAGTTGGACCGTG +
Preference number: 1 (lower is better)
Translates to: KGVDGGQHEVAALGS*VCFLAPSLPVSWTV
Trigger: CACGGTCCAACTCACAGGCAAAGAGGGAGCTAGAAAACAGACTCAGGAGCCCAAAGCAGCCACCTCATGCTGGCCTCCGTCCACACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
3UTR TCA 90 bp GATGTGATGGTTGAAGCAGGGCAAGGGTGTGGACGGAGGCCAGCATaGGGTGGCTGCTTTGGGCTCCTGAGTCTGTTTTCTAGCTCCCTC +
Preference number: 1 (lower is better)
Translates to: DVMVEAGQGCGRRPA*GGCFGLLSLFSSSL
Trigger: GAGGGAGCTAGAAAACAGACTCAGGAGCCCAAAGCAGCCACCTCATGCTGGCCTCCGTCCACACCCTTGCCCTGCTTCAACCATCACATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
3UTR TCA 72 bp GCTCCGCCAGGTAAGAAAGGGATGGCCGTGCAGATGTaGTGGTTGAAGCAGGGCAAGGGTGTGGACGGAGGC +
Preference number: 3 (lower is better)
Translates to: APPGKKGMAVQM*WLKQGKGVDGG
Trigger: GCCTCCGTCCACACCCTTGCCCTGCTTCAACCATCACATCTGCACGGCCATCCCTTTCTTACCTGGCGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
3UTR CCA 72 bp CAAGGGAAGGGCGCCATGGAGAGCAGGTTCAGGTCTTaGGACCTGAGTGACCTCCTAGAGGGGACAGTCCTG +
Preference number: 3 (lower is better)
Translates to: QGKGAMESRFRS*DLSDLLEGTVL
Trigger: CAGGACTGTCCCCTCTAGGAGGTCACTCAGGTCCCAAGACCTGAACCTGCTCTCCATGGCGCCCTTCCCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
3UTR TCA 72 bp CAGGTAAGAAAGGGATGGCCGTGCAGATGTGATGGTTaGAGCAGGGCAAGGGTGTGGACGGAGGCCAGCATG +
Preference number: 3 (lower is better)
Translates to: QVRKGWPCRCDG*SRARVWTEASM
Trigger: CATGCTGGCCTCCGTCCACACCCTTGCCCTGCTTCAACCATCACATCTGCACGGCCATCCCTTTCTTACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS-3UTR TCA 90 bp ATTCAGTTAGGTATAAATCATAGGTGCAAGGACAAGGGAAGGGCGCCATGGAGATTAAGGCAGCAGTCCTaGCCCCCTCCATCACTGCCT +
Preference number: 4 (lower is better)
Translates to: IQLGINHRCKDKGRAPWRLRQQS*PPPSLP
Trigger: AGGCAGTGATGGAGGGGGTCAGGACTGCTGCCTTAA...TCTCCATGGCGCCCTTCCCTTGTCCTTGCACCTATGATTTATACCTAACTGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS GCA 90 bp TGTTTCCCTGGGGCTGGAGGCTGGTCCAGGCGGCGCATCAGGTTCTaGACCCAGCCTTCCTCAGGGTTTGCACATAGCTCAGGCTTAGAG +
Preference number: 5 (lower is better)
Translates to: CFPGAGGWSRRRIRF*TQPSSGFAHSSGLE
Trigger: CTCTAAGCCTGAGCTATGTGCAAACCCTGAGGAAGGCTGGGTGCAGAACCTGATGCGCCGCCTGGACCAGCCTCCAGCCCCAGGGAAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS GCA 90 bp TGCACCCAGCCTTCCTCAGGGTTTGCACATAGCTCAGGCTTAGAGTaGTTCCGGGGTGAGAACAGGATTGCCGGGATGGGACAGCCTAAA +
Preference number: 5 (lower is better)
Translates to: CTQPSSGFAHSSGLE*FRGENRIAGMGQPK
Trigger: TTTAGGCTGTCCCATCCCGGCAATCCTGTTCTCACCCCGGAAGCACTCTAAGCCTGAGCTATGTGCAAACCCTGAGGAAGGCTGGGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS-3UTR CAA 90 bp ATTCAGTTAGGTATAAATCATAGGTGCAAGGACAAGGGAAGGGCGCCATGGAGAGGGGTGAGAACAGGATaGCCGGGATGGGACAGCCTA +
Preference number: 5 (lower is better)
Translates to: IQLGINHRCKDKGRAPWRGVRTG*PGWDSL
Trigger: TAGGCTGTCCCATCCCGGCAATCCTGTTCTCACCCC...TCTCCATGGCGCCCTTCCCTTGTCCTTGCACCTATGATTTATACCTAACTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS CAA 90 bp CTGGCTGTACTTAAGGCAGCAGTCCTGACCCCCTCCATCACTGCCTaGGGTCCAGGGGATGCAGAGAGCCAGGACCAGGCTAAGGAGGCT +
Preference number: 6 (lower is better)
Translates to: LAVLKAAVLTPSITA*GPGDAESQDQAKEA
Trigger: AGCCTCCTTAGCCTGGTCCTGGCTCTCTGCATCCCCTGGACCCAAGGCAGTGATGGAGGGGGTCAGGACTGCTGCCTTAAGTACAGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS CAA 90 bp GCTTCCGGGGTGAGAACAGGATTGCCGGGATGGGACAGCCTAAACTaGGTTCTTGCTTCCTATAGCCTCGGACAATACTGTAGGGAATTT +
Preference number: 6 (lower is better)
Translates to: ASGVRTGLPGWDSLN*VLASYSLGQYCREF
Trigger: AAATTCCCTACAGTATTGTCCGAGGCTATAGGAAGCAAGAACCAAGTTTAGGCTGTCCCATCCCGGCAATCCTGTTCTCACCCCGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5
CDS CAA 72 bp GTGAGAACAGGATTGCCGGGATGGGACAGCCTAAACTaGGTTCTTGCTTCCTATAGCCTCGGACAATACTGT +
Preference number: 6 (lower is better)
Translates to: VRTGLPGWDSLN*VLASYSLGQYC
Trigger: ACAGTATTGTCCGAGGCTATAGGAAGCAAGAACCAAGTTTAGGCTGTCCCATCCCGGCAATCCTGTTCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095114.5