Pregenerated sensors for CCL20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026166Ensembl transcript IDs: ENSMUST00000027351.13, ENSMUST00000113437.9, ENSMUST00000186832.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGTGCAGTGATGTGCAGGTGAAGCCTTCAACCCCAGCTGTGATCATTTCCTCCGAATCAAGTAGCTATTaGCTATCAGCTGCACAGGGA | + |
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Preference number: 2 (lower is better) Translates to: LCSDVQVKPSTPAVIISSESSSY*LSAAQG Trigger: TCCCTGTGCAGCTGATAGTCAATAGCTACTTGATTC...GGAGGAAATGATCACAGCTGGGGTTGAAGGCTTCACCTGCACATCACTGCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR-3UTR TCA 90 bp | TATGAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTACTCCAGCAGACCTTTaGTCCACTCTCTGCTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: YESTSSIGQVHWDTNQVCTPADL*STLCFL Trigger: AAGGAAGCAGAGAGTGGATCAAAGGTCTGCTGGAGT...ACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR-3UTR TCA 90 bp | ATAAACTATTCCCTTAAACATAATATTAATCCTTCCACTAAGCGCCCCCATGGAATCAGGTCTGTGCAGTaGTGTGCAGGTGAAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: INYSLKHNINPSTKRPHGIRSVQ*CAGEAF Trigger: GAAGGCTTCACCTGCACATCACTGCACAGACCTGAT...TCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTTTAAGGGAATAGTTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| 3UTR-3UTR GCA 90 bp | ATAAACTATTCCCTTAAACATAATATTAATCCTTCCACTAAGCGCCCCCATGGACATACAACTGCAAAATaGATCCTGTGCTTGCATGAT | + |
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Preference number: 2 (lower is better) Translates to: INYSLKHNINPSTKRPHGHTTAK*ILCLHD Trigger: ATCATGCAAGCACAGGATGCATTTTGCAGTTGTATG...TCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTTTAAGGGAATAGTTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR TCA 72 bp | GACAAGTCCACTGGGACACAAATCAGGTCTGTGCAGTaGTGTGCAGGTGAAGCCTTCAACCCCAGCTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: DKSTGTQIRSVQ*CAGEAFNPSCD Trigger: ATCACAGCTGGGGTTGAAGGCTTCACCTGCACATCACTGCACAGACCTGATTTGTGTCCCAGTGGACTTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| 3UTR GCA 72 bp | CATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTaGAGTGATGTGCAGGTGAAGCCTTCAACCCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: HWTSPLGHKSGL*SDVQVKPSTPA Trigger: AGCTGGGGTTGAAGGCTTCACCTGCACATCACTGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| 3UTR-3UTR CAA 90 bp | CATCTTTTCCACAAGAATCAAGTAGCTATTGACTATCAGCTGCACAGGGAATTCAACTCCAGCAGACCTTaGATCCACTCTCTGCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: HLFHKNQVAIDYQLHREFNSSRP*IHSLLP Trigger: AGGAAGCAGAGAGTGGATCAAAGGTCTGCTGGAGTT...GAATTCCCTGTGCAGCTGATAGTCAATAGCTACTTGATTCTTGTGGAAAAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR-3UTR CAA 90 bp | TTAATCCTTCCACTAAGCGCCCCCATGGATTGTGGGAAATTAACATTAAATAGCAATCAACTTCATCCATaGGACAAGTCCACTGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: LILPLSAPMDCGKLTLNSNQLHP*DKSTGT Trigger: TGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATT...GCTATTTAATGTTAATTTCCCACAATCCATGGGGGCGCTTAGTGGAAGGATTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| 3UTR-3UTR CAA 90 bp | TTAATCCTTCCACTAAGCGCCCCCATGGATTGTGGGAAATTAACATTAAATAGCCTTCTTATGAGGGATTaGAGTCTGAGAAAAGATGGC | + |
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Preference number: 3 (lower is better) Translates to: LILPLSAPMDCGKLTLNSLLMRD*SLRKDG Trigger: GCCATCTTTTCTCAGACTCAAATCCCTCATAAGAAG...GCTATTTAATGTTAATTTCCCACAATCCATGGGGGCGCTTAGTGGAAGGATTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR TCA 72 bp | TTGGCATACAACTGCAAAATGCATCCTGTGCTTGCATaGTCTAACTCAAATCCCCCTTCTAAAGTTCAATGT | + |
|
Preference number: 3 (lower is better) Translates to: LAYNCKMHPVLA*SNSNPPSKVQC Trigger: ACATTGAACTTTAGAAGGGGGATTTGAGTTAGATCATGCAAGCACAGGATGCATTTTGCAGTTGTATGCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR TCA 72 bp | GAGGAAACATCTTTTCCACAAGAATCAAGTAGCTATTaGCTATCAGCTGCACAGGGAATTCTAAGACACCTT | + |
|
Preference number: 3 (lower is better) Translates to: EETSFPQESSSY*LSAAQGILRHL Trigger: AAGGTGTCTTAGAATTCCCTGTGCAGCTGATAGTCAATAGCTACTTGATTCTTGTGGAAAAGATGTTTCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR GCA 72 bp | TGGCACAGTAGTATCAGATACCATCTATTGATAAAATaGTACATTACTGACATAAGCCAGTATCACTGGACT | + |
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Preference number: 3 (lower is better) Translates to: WHSSIRYHLLIK*YITDISQYHWT Trigger: AGTCCAGTGATACTGGCTTATGTCAGTAATGTAGCATTTTATCAATAGATGGTATCTGATACTACTGTGCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR GCA 90 bp | AAATCAGGTCTGTGCAGTGATGTGCAGGTGAAGCCTTCAACCCCAGCTGTGATCGTCGTAGTTGCTTGCTaGTTCTGCCTGGCTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KSGLCSDVQVKPSTPAVIVVVAC*FCLAAE Trigger: CTCTGCAGCCAGGCAGAAGCAGCAAGCAACTACGAC...GATCACAGCTGGGGTTGAAGGCTTCACCTGCACATCACTGCACAGACCTGATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS-3UTR GCA 90 bp | TTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCAGTGATGTGTTGCTTCTGCCTGGCTaGAGAGGTGAGCCAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: FIHWTSPLGHKSGLCSDVLLLPG*RGEPAV Trigger: TACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAA...CACATCACTGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| CDS-3UTR GCA 90 bp | GAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCACTGCTTCTGCCTGGCTaGAGAGGTGAGCCAGCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: ESTSSIGQVHWDTNQVCALLLPG*RGEPAV Trigger: TACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAG...TGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS-3UTR GCA 90 bp | GAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCAGTAGTTGCTTGCTTCTaGCTGGCTGCAGAGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: ESTSSIGQVHWDTNQVCAVVACF*LAAEVS Trigger: GCTCACCTCTGCAGCCAGGCAGAAGCAAGCAACTAC...TGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| CDS-3UTR GCA 90 bp | TGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCAGTGATGTGCAGGTGAAGCATTTGGAGAGAGACTaGTTGTCCTTCAATGATCCA | + |
|
Preference number: 4 (lower is better) Translates to: WTSPLGHKSGLCSDVQVKHLERD*LSFNDP Trigger: TGGATCATTGAAGGACAAGCAGTCTCTCTCCAAATG...CTTCACCTGCACATCACTGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR CCA 90 bp | TCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCAGTGCACCCAGTTCTGCTTTaGATCAGCGCACACAGATTT | + |
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Preference number: 4 (lower is better) Translates to: STSSIGQVHWDTNQVCAVHPVLL*ISAHRF Trigger: AAATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTG...CACTGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS-3UTR GCA 90 bp | TATGAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTAGCCAGCAGTACCCATaGCAAAGCAAGGAAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: YESTSSIGQVHWDTNQVCSQQYP*QSKEEQ Trigger: CTGCTCTTCCTTGCTTTGGCATGGGTACTGCTGGCT...ACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS-3UTR GCA 90 bp | CATCTTTTCCACAAGAATCAAGTAGCTATTGACTATCAGCTGCACAGGGAATTCTTGCTTCTGCCTGGCTaGAGAGGTGAGCCAGCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: HLFHKNQVAIDYQLHREFLLLPG*RGEPAV Trigger: TACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAA...GAATTCCCTGTGCAGCTGATAGTCAATAGCTACTTGATTCTTGTGGAAAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR GCA 90 bp | ACTATTCCCTTAAACATAATATTAATCCTTCCACTAAGCGCCCCCATGGATTGTGTTGCTTGCTGCTTCTaGCTGGCTGCAGAGGTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TIPLNIILILPLSAPMDCVACCF*LAAEVS Trigger: GCTCACCTCTGCAGCCAGGCAGAAGCAGCAAGCAAC...ACAATCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTTTAAGGGAATAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS-3UTR CCA 90 bp | GAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCACACCCAGTTCTGCTTTaGATCAGCGCACACAGATTT | + |
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Preference number: 4 (lower is better) Translates to: ESTSSIGQVHWDTNQVCAHPVLL*ISAHRF Trigger: AAATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTG...TGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS-3UTR GCA 90 bp | CATCTTTTCCACAAGAATCAAGTAGCTATTGACTATCAGCTGCACAGGGAATTCAGCCAGCAGTACCCATaGCAAAGCAAGGAAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: HLFHKNQVAIDYQLHREFSQQYP*QSKEEQ Trigger: CTGCTCTTCCTTGCTTTGGCATGGGTACTGCTGGCT...GAATTCCCTGTGCAGCTGATAGTCAATAGCTACTTGATTCTTGTGGAAAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR GCA 90 bp | TTAATCCTTCCACTAAGCGCCCCCATGGATTGTGGGAAATTAACATTAAATAGCAGCCAGCAGTACCCATaGCAAAGCAAGGAAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LILPLSAPMDCGKLTLNSSQQYP*QSKEEQ Trigger: CTGCTCTTCCTTGCTTTGGCATGGGTACTGCTGGCT...GCTATTTAATGTTAATTTCCCACAATCCATGGGGGCGCTTAGTGGAAGGATTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS-3UTR GCA 90 bp | AACATAATATTAATCCTTCCACTAAGCGCCCCCATGGATTGTGGGAAATTAACAGTAGTTGCTTGCTTCTaGCTGGCTGCAGAGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: NIILILPLSAPMDCGKLTVVACF*LAAEVS Trigger: GCTCACCTCTGCAGCCAGGCAGAAGCAAGCAACTAC...TGTTAATTTCCCACAATCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| 3UTR CAA 72 bp | TGGTGTTGGCATACAACTGCAAAATGCATCCTGTGCTaGCATGATCTAACTCAAATCCCCCTTCTAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: WCWHTTAKCILC*HDLTQIPLLKF Trigger: GAACTTTAGAAGGGGGATTTGAGTTAGATCATGCAAGCACAGGATGCATTTTGCAGTTGTATGCCAACACCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR CCA 90 bp | CTTAAACATAATATTAATCCTTCCACTAAGCGCCCCCATGGATTGTGGGAAATTCACCCAGTTCTGCTTTaGATCAGCGCACACAGATTT | + |
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Preference number: 4 (lower is better) Translates to: LKHNINPSTKRPHGLWEIHPVLL*ISAHRF Trigger: AAATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTG...AATTTCCCACAATCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS-3UTR TCA 90 bp | GGATGTGAACACTTATCTAACATCTCTAAATTCAGTATCTATGGCACAGTAGTACTGCTTGTCCTTCAATaGTCCATACCTGAGGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: GCEHLSNISKFSIYGTVVLLVLQ*SIPEEV Trigger: AACCTCCTCAGGTATGGATCATTGAAGGACAAGCAG...TACTACTGTGCCATAGATACTGAATTTAGAGATGTTAGATAAGTGTTCACATCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| 3UTR CAA 72 bp | AATGGCTTTGGTATATCACATCTTCTTATGAGGGATTaGAGTCTGAGAAAAGATGGCTTTGCCCAACATAAC | + |
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Preference number: 4 (lower is better) Translates to: NGFGISHLLMRD*SLRKDGFAQHN Trigger: GTTATGTTGGGCAAAGCCATCTTTTCTCAGACTCAAATCCCTCATAAGAAGATGTGATATACCAAAGCCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS GCA 90 bp | AGGCGTCTGTATGTACGAGAGGCAACAGTCGTAGTTGCTTGCTTCTaGCTGGCTGCAGAGGTGAGCCAGCAGTACCCATGCCAAAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: RRLYVREATVVVACF*LAAEVSQQYPCQSK Trigger: CTTGCTTTGGCATGGGTACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| CDS GCA 90 bp | CGTCTGTATGTACGAGAGGCAACAGTCGTAGTTGCTTGCTGCTTCTaGCTGGCTGCAGAGGTGAGCCAGCAGTACCCATGCCAAAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: RLYVREATVVVACCF*LAAEVSQQYPCQSK Trigger: CTTGCTTTGGCATGGGTACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS-3UTR CAA 90 bp | AAGTTCAATGTCACTAGGCTGAAGAACTCCAGCAGACCTTTGATCCACTCTCTGTCACCCAGTTCTGCTTaGGATCAGCGCACACAGATT | + |
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Preference number: 5 (lower is better) Translates to: KFNVTRLKNSSRPLIHSLSPSSA*DQRTQI Trigger: AATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTGA...CAGAGAGTGGATCAAAGGTCTGCTGGAGTTCTTCAGCCTAGTGACATTGAACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR CAA 90 bp | TATGAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTTCACCCAGTTCTGCTTaGGATCAGCGCACACAGATT | + |
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Preference number: 5 (lower is better) Translates to: YESTSSIGQVHWDTNQVCSPSSA*DQRTQI Trigger: AATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTGA...ACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS-3UTR CAA 90 bp | GAATCAACTTCATCCATTGGACAAGTCCACTGGGACACAAATCAGGTCTGTGCATTGGAGAGAGACTGCTaGTCCTTCAATGATCCATAC | + |
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Preference number: 5 (lower is better) Translates to: ESTSSIGQVHWDTNQVCALERDC*SFNDPY Trigger: GTATGGATCATTGAAGGACAAGCAGTCTCTCTCCAA...TGCACAGACCTGATTTGTGTCCCAGTGGACTTGTCCAATGGATGAAGTTGATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS-3UTR CAA 90 bp | ATAAACTATTCCCTTAAACATAATATTAATCCTTCCACTAAGCGCCCCCATGGAAACAGTCGTAGTTGCTaGCTGCTTCTGCCTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: INYSLKHNINPSTKRPHGNSRSC*LLLPGC Trigger: GCAGCCAGGCAGAAGCAGCAAGCAACTACGACTGTT...TCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTTTAAGGGAATAGTTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS-3UTR CAA 90 bp | CTTAAACATAATATTAATCCTTCCACTAAGCGCCCCCATGGATTGTGGGAAATTTCACCCAGTTCTGCTTaGGATCAGCGCACACAGATT | + |
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Preference number: 5 (lower is better) Translates to: LKHNINPSTKRPHGLWEISPSSA*DQRTQI Trigger: AATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTGA...AATTTCCCACAATCCATGGGGGCGCTTAGTGGAAGGATTAATATTATGTTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS GCA 72 bp | TTCTGCCTGGCTGCAGAGGTGAGCCAGCAGTACCCATaGCAAAGCAAGGAAGAGCAGACGCTTGCCACCGCA | + |
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Preference number: 6 (lower is better) Translates to: FCLAAEVSQQYP*QSKEEQTLATA Trigger: TGCGGTGGCAAGCGTCTGCTCTTCCTTGCTTTGGCATGGGTACTGCTGGCTCACCTCTGCAGCCAGGCAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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| CDS GCA 72 bp | GTACGAGAGGCAACAGTCGTAGTTGCTTGCTGCTTCTaGCTGGCTGCAGAGGTGAGCCAGCAGTACCCATGC | + |
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Preference number: 6 (lower is better) Translates to: VREATVVVACCF*LAAEVSQQYPC Trigger: GCATGGGTACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAGCAAGCAACTACGACTGTTGCCTCTCGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS GCA 72 bp | GAGGCGTCTGTATGTACGAGAGGCAACAGTCGTAGTTaGTTGCTTCTGCCTGGCTGCAGAGGTGAGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: EASVCTRGNSRS*LLLPGCRGEPA Trigger: TGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACGCCTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| CDS GCA 72 bp | CGTCTGTATGTACGAGAGGCAACAGTCGTAGTTGCTTaGTGCTTCTGCCTGGCTGCAGAGGTGAGCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: RLYVREATVVVA*CFCLAAEVSQQ Trigger: CTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS CAA 90 bp | AAGGAAGAGGCGTCTGTATGTACGAGAGGCAACAGTCGTAGTTGCTaGCTGCTTCTGCCTGGCTGCAGAGGTGAGCCAGCAGTACCCATG | + |
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Preference number: 6 (lower is better) Translates to: KEEASVCTRGNSRSC*LLLPGCRGEPAVPM Trigger: CATGGGTACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACGCCTCTTCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS GCA 72 bp | TATGTACGAGAGGCAACAGTCGTAGTTGCTTGCTTCTaGCTGGCTGCAGAGGTGAGCCAGCAGTACCCATGC | + |
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Preference number: 6 (lower is better) Translates to: YVREATVVVACF*LAAEVSQQYPC Trigger: GCATGGGTACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAAGCAACTACGACTGTTGCCTCTCGTACATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| CDS GCA 72 bp | CTGTATGTACGAGAGGCAACAGTCGTAGTTGCTTGCTaGTTCTGCCTGGCTGCAGAGGTGAGCCAGCAGTAC | + |
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Preference number: 6 (lower is better) Translates to: LYVREATVVVAC*FCLAAEVSQQY Trigger: GTACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113437.9 |
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| CDS CAA 72 bp | GCGTCTGTATGTACGAGAGGCAACAGTCGTAGTTGCTaGCTTCTGCCTGGCTGCAGAGGTGAGCCAGCAGTA | + |
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Preference number: 6 (lower is better) Translates to: ASVCTRGNSRSC*LLPGCRGEPAV Trigger: TACTGCTGGCTCACCTCTGCAGCCAGGCAGAAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027351.13 ENSMUST00000186832.2 |
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| CDS TCA 72 bp | TGGAGAGAGACTGCTTGTCCTTCAATGATCCATACCTaGGGAGGTTCACAGCCCTTTTCACCCAGTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: WRETACPSMIHT*GGSQPFSPSSA Trigger: AGCAGAACTGGGTGAAAAGGGCTGTGAACCTCCTCAGGTATGGATCATTGAAGGACAAGCAGTCTCTCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027351.13 |
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| CDS TCA 72 bp | TTTGGATCAGCGCACACAGATTTTCTTTTCTTCGTGTaGAAGATGATAGCATTAATGTCACAAGCTTCATCG | + |
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Preference number: 6 (lower is better) Translates to: FGSAHTDFLFFV*KMIALMSQASS Trigger: CGATGAAGCTTGTGACATTAATGCTATCATCTTTCACACGAAGAAAAGAAAATCTGTGTGCGCTGATCCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027351.13 ENSMUST00000113437.9 ENSMUST00000186832.2 |
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