Pregenerated sensors for CCL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035385Ensembl transcript IDs: ENSMUST00000000193.6
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTaGCATTTAAGAAATTTTAGTATTCATGAAAGGGAATACCATAAC | + |
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Preference number: 2 (lower is better) Translates to: SVESGFTEREKWIHT*HLRNFSIHEREYHN Trigger: GTTATGGTATTCCCTTTCATGAATACTAAAATTTCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| 3UTR CAA 90 bp | CACAAAGTTTACCCATTCATCTTTACAAAATTCATCTCTCATACATaGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCC | + |
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Preference number: 2 (lower is better) Translates to: HKVYPFIFTKFISHT*KVLNLDSQRGKNGS Trigger: GGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGTATGAGAGATGAATTTTGTAAAGATGAATGGGTAAACTTTGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR TCA 90 bp | TCATACATTGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACTCCAGCCGGCAACTGTaGACAGCAGGCCCAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: SYIESVESGFTEREKWIHSSRQL*TAGPEA Trigger: TGCTTCTGGGCCTGCTGTTCACAGTTGCCGGCTGGA...GTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGTATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR TCA 90 bp | TACATTGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCGACACCTGCTGCTGGTaGTCCTCTTGTAGCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: YIESVESGFTEREKWIHTDTCCW*SSCSSP Trigger: TGGAGAGCTACAAGAGGATCACCAGCAGCAGGTGTC...GGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR TCA 90 bp | GTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTTGCATTTAAGATTAACTGCATCTGGCTaGGCCAACACGTGGATGCTC | + |
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Preference number: 4 (lower is better) Translates to: VESGFTEREKWIHTLHLRLTASG*ANTWML Trigger: GAGCATCCACGTGTTGGCTCAGCCAGATGCAGTTAA...TCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR TCA 90 bp | GTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTTGCATTTAAGACATCTTGCTGGTGAATaGGTAGCAGCAGGTGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: VESGFTEREKWIHTLHLRHLAGE*VAAGEW Trigger: CCACTCACCTGCTGCTACTCATTCACCAGCAAGATG...TCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR CCA 90 bp | CTCTCATACATTGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCGGCGTTAACTGCATCTaGCTGAGCCAACACGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: LSYIESVESGFTEREKWIGVNCI*LSQHVD Trigger: ATCCACGTGTTGGCTCAGCCAGATGCAGTTAACGCC...GATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGTATGAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR CCA 90 bp | GTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTTGCATTTAAGACTCCAGCCTACTCATTaGGATCATCTTGCTGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: VESGFTEREKWIHTLHLRLQPTH*DHLAGE Trigger: TTCACCAGCAAGATGATCCCAATGAGTAGGCTGGAG...TCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR TCA 90 bp | TCATACATTGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACTCCTACAGAAGTGCTTaGGGTGGTTGTGGAAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SYIESVESGFTEREKWIHSYRSA*GGCGKG Trigger: ACCTTTTCCACAACCACCTCAAGCACTTCTGTAGGA...GTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGTATGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR GCA 90 bp | GTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTTGCATTTAAGATCACTCCTACAGAAGTaGTTGAGGTGGTTGTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: VESGFTEREKWIHTLHLRSLLQK*LRWLWK Trigger: TTTCCACAACCACCTCAAGCACTTCTGTAGGAGTGA...TCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR CCA 90 bp | ACATTGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTGGTTCTGATCTCATTTaGTTCCGATCCAGGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: TLKVLNLDSQRGKNGSTPGSDLI*FRSRFL Trigger: TAAAAACCTGGATCGGAACCAAATGAGATCAGAACC...AGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR GCA 90 bp | CTCTCATACATTGAAAGTGTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCGGAAAAGGTAGTGGATaGATTAGCTTCAGATTTACG | + |
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Preference number: 4 (lower is better) Translates to: LSYIESVESGFTEREKWIGKGSG*ISFRFT Trigger: CGTAAATCTGAAGCTAATGCATCCACTACCTTTTCC...GATCCATTTTTCCCTCTCTGTGAATCCAGATTCAACACTTTCAATGTATGAGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| 3UTR CAA 72 bp | TCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTaGCATTTAAGAAATTTTAGTATTCATGAAAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SGFTEREKWIHT*HLRNFSIHERE Trigger: TTCCCTTTCATGAATACTAAAATTTCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS TCA 90 bp | CTTGTAGCTCTCCAGCCTACTCATTGGGATCATCTTGCTGGTGAATaGGTAGCAGCAGGTGAGTGGGGCGTTAACTGCATCTGGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: LVALQPTHWDHLAGE*VAAGEWGVNCIWLS Trigger: GCTCAGCCAGATGCAGTTAACGCCCCACTCACCTGCTGCTACTCATTCACCAGCAAGATGATCCCAATGAGTAGGCTGGAGAGCTACAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS-3UTR CAA 90 bp | GTTGAATCTGGATTCACAGAGAGGGAAAAATGGATCCACACCTTGCATTTAAGAAAAACTACAGCTTCTTaGGGACACCTGCTGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: VESGFTEREKWIHTLHLRKTTAS*GHLLLV Trigger: CACCAGCAGCAGGTGTCCCAAAGAAGCTGTAGTTTT...TCTTAAATGCAAGGTGTGGATCCATTTTTCCCTCTCTGTGAATCCAGATTCAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS TCA 72 bp | CTCCAGCCTACTCATTGGGATCATCTTGCTGGTGAATaGGTAGCAGCAGGTGAGTGGGGCGTTAACTGCATC | + |
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Preference number: 6 (lower is better) Translates to: LQPTHWDHLAGE*VAAGEWGVNCI Trigger: GATGCAGTTAACGCCCCACTCACCTGCTGCTACTCATTCACCAGCAAGATGATCCCAATGAGTAGGCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS CAA 72 bp | TCCTTCTTGGGGTCAGCACAGACCTCTCTCTTGAGCTaGGTGACAAAAACTACAGCTTCTTTGGGACACCTG | + |
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Preference number: 6 (lower is better) Translates to: SFLGSAQTSLLS*VTKTTASLGHL Trigger: CAGGTGTCCCAAAGAAGCTGTAGTTTTTGTCACCAAGCTCAAGAGAGAGGTCTGTGCTGACCCCAAGAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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| CDS TCA 72 bp | GTTCACTGTCACACTGGTCACTCCTACAGAAGTGCTTaGGGTGGTTGTGGAAAAGGTAGTGGATGCATTAGC | + |
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Preference number: 6 (lower is better) Translates to: VHCHTGHSYRSA*GGCGKGSGCIS Trigger: GCTAATGCATCCACTACCTTTTCCACAACCACCTCAAGCACTTCTGTAGGAGTGACCAGTGTGACAGTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000193.6 |
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