Pregenerated sensors for CCL19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071005Ensembl transcript IDs: ENSMUST00000102957.6, ENSMUST00000140546.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTCTTGTCCACACTCACATCGACTCTCTAGGCACAGACTTGGCTaGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: LSCPHSHRLSRHRLG*VRSGTEHQEAWSSL Trigger: AAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTCTGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR CCA 90 bp | GGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCTaGTCCTTGGTTTCCTGGGCCAGAGTGATTCACATCTCTTTACTC | + |
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Preference number: 1 (lower is better) Translates to: GLGLGQSIRRPGPLF*SLVSWARVIHISLL Trigger: GAGTAAAGAGATGTGAATCACTCTGGCCCAGGAAACCAAGGACCAGAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| 3UTR CCA 90 bp | ACCAAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATaGTGTTCTAGCCACACAAACTCTCTTGTCCACACTCACATCGAC | + |
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Preference number: 1 (lower is better) Translates to: TKRLYWKLCSLATER*CSSHTNSLVHTHID Trigger: GTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR-3UTR CCA 90 bp | CTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCTGACACAGGGCTCCTTCTaGTGCTGTTGCCTTTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: LGWVRSGTEHQEAWSSLLTQGSF*CCCLCS Trigger: AGAACAAAGGCAACAGCACCAGAAGGAGCCCTGTGT...CAGAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| 3UTR CAA 90 bp | ACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACAGACTaGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: TNSLVHTHIDSLGTD*AGLGLGQSIRRPGP Trigger: AGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTCTGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR-3UTR CCA 90 bp | CGGTACCAAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGGAGCATCAGGAGGCCTaGTCCTCTCTTCTGGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: RYQAALLEALQSSHREMVEHQEA*SSLLVL Trigger: AAGGACCAGAAGAGAGGACCAGGCCTCCTGATGCTC...CACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTTGGTACCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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| 3UTR-3UTR CCA 90 bp | AAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCCTGGTCCTCTCTTCTaGTCCTTGGTTTCCTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: KRLYWKLCSLATERWCSSPGPLF*SLVSWA Trigger: GGCCCAGGAAACCAAGGACCAGAAGAGAGGACCAGG...GCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTAGCCACACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACACCTGGTCCTCTCTTCTaGTCCTTGGTTTCCTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: CSSHTNSLVHTHIDSLGTPGPLF*SLVSWA Trigger: GGCCCAGGAAACCAAGGACCAGAAGAGAGGACCAGG...TGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGGCTAGAACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR-3UTR GCA 90 bp | GAGAGATGGTGTTCTAGCCACACAAACTCTCTTGTCCACACTCACATCGACTCTCAGGGCTCCTTCTGGTaGTGTTGCCTTTGTTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: ERWCSSHTNSLVHTHIDSQGSFW*CCLCSK Trigger: CTTAGAACAAAGGCAACAGCACCAGAAGGAGCCCTG...AGAGTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGGCTAGAACACCATCTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTAGCCACACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACATTTCCTGGGCCAGAGTaGTTCACATCTCTTTACTCA | + |
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Preference number: 2 (lower is better) Translates to: CSSHTNSLVHTHIDSLGTFPGPE*FTSLYS Trigger: TGAGTAAAGAGATGTGAATCACTCTGGCCCAGGAAA...TGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGGCTAGAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| 3UTR CCA 72 bp | CTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCTaGTCCTTGGTTTCCTGGGCCAGAGTGATTCACATC | + |
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Preference number: 3 (lower is better) Translates to: LGQSIRRPGPLF*SLVSWARVIHI Trigger: GATGTGAATCACTCTGGCCCAGGAAACCAAGGACCAGAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR-3UTR CAA 90 bp | TCTAGCCACACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACAGACCCTCTCTTCTGGTCCTaGGTTTCCTGGGCCAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: SSHTNSLVHTHIDSLGTDPLFWS*VSWARV Trigger: CACTCTGGCCCAGGAAACCAAGGACCAGAAGAGAGG...GTCTGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGGCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR GCA 72 bp | CACATCTCTTTACTCAAGACACAGGGCTCCTTCTGGTaGTGTTGCCTTTGTTCTAAGGGGAGGGAGGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: HISLLKTQGSFW*CCLCSKGREER Trigger: CCTCTCCTCCCTCCCCTTAGAACAAAGGCAACAGCACCAGAAGGAGCCCTGTGTCTTGAGTAAAGAGATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTAGCCACACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACACCTCTCTTCTGGTCCTaGGTTTCCTGGGCCAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: CSSHTNSLVHTHIDSLGTPLFWS*VSWARV Trigger: CACTCTGGCCCAGGAAACCAAGGACCAGAAGAGAGG...TGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGGCTAGAACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| 3UTR CCA 72 bp | ATTCACATCTCTTTACTCAAGACACAGGGCTCCTTCTaGTGCTGTTGCCTTTGTTCTAAGGGGAGGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: IHISLLKTQGSF*CCCLCSKGREE Trigger: CTCCTCCCTCCCCTTAGAACAAAGGCAACAGCACCAGAAGGAGCCCTGTGTCTTGAGTAAAGAGATGTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| 3UTR CCA 72 bp | CTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATaGTGTTCTAGCCACACAAACTCTCTTGTCCACACT | + |
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Preference number: 3 (lower is better) Translates to: LYWKLCSLATER*CSSHTNSLVHT Trigger: AGTGTGGACAAGAGAGTTTGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | GACTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCCCAGGGATGGGGCGCTaGGTCACAGACAGGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: DLAGLGLGQSIRRPGPLFPGMGR*VTDRQQ Trigger: CTGCTGCCTGTCTGTGACCCAGCGCCCCATCCCTGG...GAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | GGCACAGACTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCGATCCACCCAGGGCTaGTCTGGAGGTGCACAGAGC | + |
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Preference number: 4 (lower is better) Translates to: GTDLAGLGLGQSIRRPGPRSTQG*SGGAQS Trigger: GCTCTGTGCACCTCCAGACCAGCCCTGGGTGGATCG...AGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTCTGTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | GGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCTGGTCCGATGTTCCCAGGGATaGGGCGCTGGGTCACAGACA | + |
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Preference number: 4 (lower is better) Translates to: GWVRSGTEHQEAWSSLLVRCSQG*GAGSQT Trigger: TGTCTGTGACCCAGCGCCCCATCCCTGGGAACATCG...GACCAGAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR TCA 90 bp | AGGCACAGACTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCAGCCCCTTAGTGTGGTaGACACAACAGCAGGCACCC | + |
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Preference number: 4 (lower is better) Translates to: RHRLGWVRSGTEHQEAWSSPLVW*TQQQAP Trigger: GGGTGCCTGCTGTTGTGTTCACCACACTAAGGGGCT...GGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTCTGTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR GCA 90 bp | CTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCTGGGGCTGGTCTGGAGGTaGACAGAGCTGATAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LGWVRSGTEHQEAWSSLLGLVWR*TELIAP Trigger: AGGGGCTATCAGCTCTGTGCACCTCCAGACCAGCCC...CAGAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR TCA 90 bp | GACTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCTCTCTTCAGCCCCTTAGTGTGGTaGACACAACAGCAGGCACCC | + |
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Preference number: 4 (lower is better) Translates to: DLAGLGLGQSIRRPGPLFSPLVW*TQQQAP Trigger: GGGTGCCTGCTGTTGTGTTCACCACACTAAGGGGCT...GAAGAGAGGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR GCA 90 bp | AGGCACAGACTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCCAGGGCTCCTTCTGGTaGTGTTGCCTTTGTTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: RHRLGWVRSGTEHQEAWSQGSFW*CCLCSW Trigger: CCAAGAACAAAGGCAACAGCACCAGAAGGAGCCCTG...GGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTCTGTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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| CDS-3UTR GCA 90 bp | AGGCACAGACTTGGCTGGGTTAGGTCTGGGACAGAGCATCAGGAGGCCTGGTCCGAGGAGGGTCAGGCTTaGCTTGGCAGAAGACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: RHRLGWVRSGTEHQEAWSEEGQA*LGRRLL Trigger: AAGAAGTCTTCTGCCAAGGCAAGCCTGACCCTCCTC...GGACCAGGCCTCCTGATGCTCTGTCCCAGACCTAACCCAGCCAAGTCTGTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | AAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCCAGGGATGGGGCGCTaGGTCACAGACAGGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: KRLYWKLCSLATERWCSSPGMGR*VTDRQQ Trigger: CTGCTGCCTGTCTGTGACCCAGCGCCCCATCCCTGG...GCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | ACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACAGACTTGGCTGGGGGAATCTCGGGGTGTTaGGAGGGCGGAGGCAGGACT | + |
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Preference number: 4 (lower is better) Translates to: TNSLVHTHIDSLGTDLAGGISGC*EGGGRT Trigger: AGTCCTGCCTCCGCCCTCCCAACACCCCGAGATTCC...CCCAGCCAAGTCTGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS-3UTR GCA 90 bp | CTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCACACAAACTCTCTTGTCGGGCTGGTCTGGAGGTaGACAGAGCTGATAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LCSLATERWCSSHTNSLVGLVWR*TELIAP Trigger: AGGGGCTATCAGCTCTGTGCACCTCCAGACCAGCCC...GACAAGAGAGTTTGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | CCACACAAACTCTCTTGTCCACACTCACATCGACTCTCTAGGCACAGACTTGGCCACCCAGGGCTGGTCTaGAGGTGCACAGAGCTGATA | + |
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Preference number: 4 (lower is better) Translates to: PHKLSCPHSHRLSRHRLGHPGLV*RCTELI Trigger: TATCAGCTCTGTGCACCTCCAGACCAGCCCTGGGTG...GCCAAGTCTGTGCCTAGAGAGTCGATGTGAGTGTGGACAAGAGAGTTTGTGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | CTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCACACACGATCCACCCAGGGCTaGTCTGGAGGTGCACAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LYWKLCSLATERWCSSHTRSTQG*SGGAQS Trigger: GCTCTGTGCACCTCCAGACCAGCCCTGGGTGGATCG...TGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | CTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCACACACGATGTTCCCAGGGATaGGGCGCTGGGTCACAGACA | + |
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Preference number: 4 (lower is better) Translates to: LYWKLCSLATERWCSSHTRCSQG*GAGSQT Trigger: TGTCTGTGACCCAGCGCCCCATCCCTGGGAACATCG...TGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS-3UTR CCA 90 bp | ACCAAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTACACAGGGCTCCTTCTaGTGCTGTTGCCTTTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TKRLYWKLCSLATERWCSTQGSF*CCCLCS Trigger: AGAACAAAGGCAACAGCACCAGAAGGAGCCCTGTGT...AGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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| CDS-3UTR CCA 90 bp | TATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCACACAAACGGGTCAGGCTTGCCTTaGCAGAAGACTTCTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: YWKLCSLATERWCSSHTNGSGLP*QKTSSV Trigger: GACTGAAGAAGTCTTCTGCCAAGGCAAGCCTGACCC...GTTTGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS-3UTR GCA 90 bp | TGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCACACAAACTCTTCCTTCTGGTGCTGTTaGCTTTGTTCTTGGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: WKLCSLATERWCSSHTNSSFWCC*LCSWQK Trigger: CTTCTGCCAAGAACAAAGGCAACAGCACCAGAAGGA...AGAGTTTGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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| CDS-3UTR CCA 90 bp | AAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCTGTTGCCTTTGTTCTTaGCAGAAGACTTCTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: KRLYWKLCSLATERWCSSCCLCS*QKTSSV Trigger: GACTGAAGAAGTCTTCTGCCAAGAACAAAGGCAACA...GCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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| CDS GCA 90 bp | TCGGGGTGTTGGGAGGGCGGAGGCAGGACTGAGGAGGGTCAGGCTTaGCTTGGCAGAAGACTTCTTCAGTCTTCGGATGATGCGATCCAC | + |
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Preference number: 5 (lower is better) Translates to: SGCWEGGGRTEEGQA*LGRRLLQSSDDAIH Trigger: GTGGATCGCATCATCCGAAGACTGAAGAAGTCTTCTGCCAAGGCAAGCCTGACCCTCCTCAGTCCTGCCTCCGCCCTCCCAACACCCCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS-3UTR CAA 90 bp | AAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCTGGAATCTCGGGGTGTaGGGAGGGCGGAGGCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: KRLYWKLCSLATERWCSSWNLGV*GGRRQD Trigger: GTCCTGCCTCCGCCCTCCCAACACCCCGAGATTCCA...GCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS-3UTR CAA 90 bp | ACCAAGCGGCTTTATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTCTCCTTCTGGTGCTGTaGCCTTTGTTCTTGGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: TKRLYWKLCSLATERWCSLLLVL*PLFLAE Trigger: TTCTGCCAAGAACAAAGGCAACAGCACCAGAAGGAG...AGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATAAAGCCGCTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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| CDS-3UTR CAA 90 bp | TATTGGAAGCTCTGCAGTCTAGCCACAGAGAGATGGTGTTCTAGCCACACAAACAGGGTCAGGCTTGCCTaGGCAGAAGACTTCTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: YWKLCSLATERWCSSHTNRVRLA*AEDFFS Trigger: ACTGAAGAAGTCTTCTGCCAAGGCAAGCCTGACCCT...GTTTGTGTGGCTAGAACACCATCTCTCTGTGGCTAGACTGCAGAGCTTCCAATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS CCA 72 bp | GAAGGTAGCGGAAGGCTTTCACGATGTTCCCAGGGATaGGGCGCTGGGTCACAGACAGGCAGCAGTCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: EGSGRLSRCSQG*GAGSQTGSSLP Trigger: CGGAAGACTGCTGCCTGTCTGTGACCCAGCGCCCCATCCCTGGGAACATCGTGAAAGCCTTCCGCTACCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102957.6 ENSMUST00000140546.3 |
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| CDS GCA 72 bp | TGGGAGGGCGGAGGCAGGACTGAGGAGGGTCAGGCTTaGCTTGGCAGAAGACTTCTTCAGTCTTCGGATGAT | + |
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Preference number: 6 (lower is better) Translates to: WEGGGRTEEGQA*LGRRLLQSSDD Trigger: ATCATCCGAAGACTGAAGAAGTCTTCTGCCAAGGCAAGCCTGACCCTCCTCAGTCCTGCCTCCGCCCTCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140546.3 |
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| CDS CAA 72 bp | GACACAGGGCTCCTTCTGGTGCTGTTGCCTTTGTTCTaGGCAGAAGACTTCTTCAGTCTTCGGATGATGCGA | + |
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Preference number: 6 (lower is better) Translates to: DTGLLLVLLPLF*AEDFFSLRMMR Trigger: TCGCATCATCCGAAGACTGAAGAAGTCTTCTGCCAAGAACAAAGGCAACAGCACCAGAAGGAGCCCTGTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102957.6 |
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