Pregenerated sensors for CCL17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031780Ensembl transcript IDs: ENSMUST00000034232.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GCTCTTGGGCTCTGCTGGTCACAGGCCGTTTTATGTTaGAACCATGGACAGCAGCCCTGGCGTCTCCAAATG | + |
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Preference number: 3 (lower is better) Translates to: ALGLCWSQAVLC*NHGQQPWRLQM Trigger: CATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATAAAACGGCCTGTGACCAGCAGAGCCCAAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| 3UTR CCA 72 bp | AAAAGGGAACAGGGACTTCTGCTCTGTGGCTGCTCTTaGGCTCTGCTGGTCACAGGCCGTTTTATGTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: KREQGLLLCGCS*ALLVTGRFMLK Trigger: TTTCAACATAAAACGGCCTGTGACCAGCAGAGCCCAAGAGCAGCCACAGAGCAGAAGTCCCTGTTCCCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR TCA 90 bp | AAAAGGGAACAGGGACTTCTGCTCTGTGGCTGCTCTTGGGCTCTGCTGGTCACAGCCAGGAGCAGCATCTaGAGTGACCTCATGGTACCA | + |
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Preference number: 4 (lower is better) Translates to: KREQGLLLCGCSWALLVTARSSI*SDLMVP Trigger: TGGTACCATGAGGTCACTTCAGATGCTGCTCCTGGC...TGTGACCAGCAGAGCCCAAGAGCAGCCACAGAGCAGAAGTCCCTGTTCCCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR CCA 90 bp | TGTGGCTGCTCTTGGGCTCTGCTGGTCACAGGCCGTTTTATGTTGAAACCATGGCTCGGCCTACATTGGTaGCTCGAGCAGCTCTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: CGCSWALLVTGRFMLKPWLGLHW*LEQLWH Trigger: ATGCCAGAGCTGCTCGAGCCACCAATGTAGGCCGAG...CCATGGTTTCAACATAAAACGGCCTGTGACCAGCAGAGCCCAAGAGCAGCCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR GCA 90 bp | TGGCTGCTCTTGGGCTCTGCTGGTCACAGGCCGTTTTATGTTGAAACCATGGACGCAGCTCTGGCATGCTaGAGAAAAGTCCCCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: WLLLGSAGHRPFYVETMDAALAC*RKVPRS Trigger: GCTTCTGGGGACTTTTCTGCAGCATGCCAGAGCTGC...GTCCATGGTTTCAACATAAAACGGCCTGTGACCAGCAGAGCCCAAGAGCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR GCA 90 bp | CACAGGCCGTTTTATGTTGAAACCATGGACAGCAGCCCTGGCGTCTCCAAATGCCGAGCAGCTCTGGCATaGTGCAGAAAAGTCCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: HRPFYVETMDSSPGVSKCRAALA*CRKVPR Trigger: TCTGGGGACTTTTCTGCAGCATGCCAGAGCTGCTCG...GCATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATAAAACGGCCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR CCA 90 bp | TTTATGTTGAAACCATGGACAGCAGCCCTGGCGTCTCCAAATGCCTCAGCGGGATGGCTCGAGCAGCTCTaGCATGCTGCAGAAAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: FMLKPWTAALASPNASAGWLEQL*HAAEKS Trigger: GGACTTTTCTGCAGCATGCCAGAGCTGCTCGAGCCA...TCCCGCTGAGGCATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| 3UTR CAA 72 bp | TGCTCTTGGGCTCTGCTGGTCACAGGCCGTTTTATGTaGAAACCATGGACAGCAGCCCTGGCGTCTCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: CSWALLVTGRFM*KPWTAALASPN Trigger: ATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATAAAACGGCCTGTGACCAGCAGAGCCCAAGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR GCA 90 bp | TGGCTGCTCTTGGGCTCTGCTGGTCACAGGCCGTTTTATGTTGAAACCATGGACTTTGTCTTTGGGGTCTaGACAGATGAGCTTGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: WLLLGSAGHRPFYVETMDFVFGV*TDELAL Trigger: CAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAA...GTCCATGGTTTCAACATAAAACGGCCTGTGACCAGCAGAGCCCAAGAGCAGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR TCA 90 bp | TTTATGTTGAAACCATGGACAGCAGCCCTGGCGTCTCCAAATGCCTCAGCGGGAGGTTTTTCACCAATCTaGTGGCCTTCTTCACATGTT | + |
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Preference number: 4 (lower is better) Translates to: FMLKPWTAALASPNASAGGFSPI*WPSSHV Trigger: AACATGTGAAGAAGGCCATCAGATTGGTGAAAAACC...TCCCGCTGAGGCATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR CAA 90 bp | AAAAGGGAACAGGGACTTCTGCTCTGTGGCTGCTCTTGGGCTCTGCTGGTCACACACTCTCGGCCTACATaGGTGGCTCGAGCAGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: KREQGLLLCGCSWALLVTHSRPT*VARAAL Trigger: CAGAGCTGCTCGAGCCACCAATGTAGGCCGAGAGTG...TGTGACCAGCAGAGCCCAAGAGCAGCCACAGAGCAGAAGTCCCTGTTCCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR CAA 90 bp | TATGTTGAAACCATGGACAGCAGCCCTGGCGTCTCCAAATGCCTCAGCGGGAAGTCTGCACAGATGAGCTaGCCCTGGACAGTCAGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: YVETMDSSPGVSKCLSGKSAQMS*PWTVRN Trigger: GTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGA...CTTCCCGCTGAGGCATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR CAA 90 bp | TATGTTGAAACCATGGACAGCAGCCCTGGCGTCTCCAAATGCCTCAGCGGGAAGGCCTTCTTCACATGTTaGTCTTTGGGGTCTGCACAG | + |
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Preference number: 5 (lower is better) Translates to: YVETMDSSPGVSKCLSGKAFFTC*SLGSAQ Trigger: CTGTGCAGACCCCAAAGACAAACATGTGAAGAAGGC...CTTCCCGCTGAGGCATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CCA 90 bp | TTCTTCACATGTTTGTCTTTGGGGTCTGCACAGATGAGCTTGCCCTaGACAGTCAGAAACACGATGGCATCCCTGGAACACTCCACTGAG | + |
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Preference number: 5 (lower is better) Translates to: FFTCLSLGSAQMSLP*TVRNTMASLEHSTE Trigger: CTCAGTGGAGTGTTCCAGGGATGCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS-3UTR CAA 90 bp | CACAGGCCGTTTTATGTTGAAACCATGGACAGCAGCCCTGGCGTCTCCAAATGCTTCACATGTTTGTCTTaGGGGTCTGCACAGATGAGC | + |
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Preference number: 5 (lower is better) Translates to: HRPFYVETMDSSPGVSKCFTCLS*GSAQMS Trigger: GCTCATCTGTGCAGACCCCAAAGACAAACATGTGAA...GCATTTGGAGACGCCAGGGCTGCTGTCCATGGTTTCAACATAAAACGGCCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS GCA 90 bp | TTTCACCAATCTGATGGCCTTCTTCACATGTTTGTCTTTGGGGTCTaGACAGATGAGCTTGCCCTGGACAGTCAGAAACACGATGGCATC | + |
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Preference number: 5 (lower is better) Translates to: FHQSDGLLHMFVFGV*TDELALDSQKHDGI Trigger: GATGCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGGCCATCAGATTGGTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS GCA 72 bp | TCTCGGCCTACATTGGTGGCTCGAGCAGCTCTGGCATaGTGCAGAAAAGTCCCCAGAAGCAGAGCAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SRPTLVARAALA*CRKVPRSRAAR Trigger: CCTGGCTGCTCTGCTTCTGGGGACTTTTCTGCAGCATGCCAGAGCTGCTCGAGCCACCAATGTAGGCCGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CCA 72 bp | TGTTTGTCTTTGGGGTCTGCACAGATGAGCTTGCCCTaGACAGTCAGAAACACGATGGCATCCCTGGAACAC | + |
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Preference number: 6 (lower is better) Translates to: CLSLGSAQMSLP*TVRNTMASLEH Trigger: GTGTTCCAGGGATGCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CAA 90 bp | ATGGCCTTCTTCACATGTTTGTCTTTGGGGTCTGCACAGATGAGCTaGCCCTGGACAGTCAGAAACACGATGGCATCCCTGGAACACTCC | + |
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Preference number: 6 (lower is better) Translates to: MAFFTCLSLGSAQMS*PWTVRNTMASLEHS Trigger: GGAGTGTTCCAGGGATGCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGGCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CAA 72 bp | TTCACATGTTTGTCTTTGGGGTCTGCACAGATGAGCTaGCCCTGGACAGTCAGAAACACGATGGCATCCCTG | + |
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Preference number: 6 (lower is better) Translates to: FTCLSLGSAQMS*PWTVRNTMASL Trigger: CAGGGATGCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CAA 90 bp | CATGGCCTTGGGTTTTTCACCAATCTGATGGCCTTCTTCACATGTTaGTCTTTGGGGTCTGCACAGATGAGCTTGCCCTGGACAGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: HGLGFFTNLMAFFTC*SLGSAQMSLPWTVR Trigger: TCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGGCCATCAGATTGGTGAAAAACCCAAGGCCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS TCA 72 bp | AGTCAGAAACACGATGGCATCCCTGGAACACTCCACTaGGGTCTTATACCAGCTCACCAACTTCCTGATAGG | + |
|
Preference number: 6 (lower is better) Translates to: SQKHDGIPGTLH*GLIPAHQLPDR Trigger: CCTATCAGGAAGTTGGTGAGCTGGTATAAGACCTCAGTGGAGTGTTCCAGGGATGCCATCGTGTTTCTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS TCA 72 bp | CCTTCTTCACATGTTTGTCTTTGGGGTCTGCACAGATaGGCTTGCCCTGGACAGTCAGAAACACGATGGCAT | + |
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Preference number: 6 (lower is better) Translates to: PSSHVCLWGLHR*ACPGQSETRWH Trigger: ATGCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CAA 72 bp | GGGTTTTTCACCAATCTGATGGCCTTCTTCACATGTTaGTCTTTGGGGTCTGCACAGATGAGCTTGCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: GFFTNLMAFFTC*SLGSAQMSLPW Trigger: CCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGGCCATCAGATTGGTGAAAAACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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| CDS CAA 90 bp | CTTGGGTTTTTCACCAATCTGATGGCCTTCTTCACATGTTTGTCTTaGGGGTCTGCACAGATGAGCTTGCCCTGGACAGTCAGAAACACG | + |
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Preference number: 6 (lower is better) Translates to: LGFFTNLMAFFTCLS*GSAQMSLPWTVRNT Trigger: CGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGGCCATCAGATTGGTGAAAAACCCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034232.3 |
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