Pregenerated sensors for CCL12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035352Ensembl transcript IDs: ENSMUST00000000194.4
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTTAGATATCATAATAAATATCACACTGCCCGTGGGGAACTTCAGGGGGAAATAGCTTCCCGGGGACACTaGCTGCTTGTGATTCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: FRYHNKYHTARGELQGEIASRGH*LLVILL Trigger: CAGGAGAATCACAAGCAGCCAGTGTCCCCGGGAAGC...TATTTCCCCCTGAAGTTCCCCACGGGCAGTGTGATATTTATTATGATATCTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000194.4 |
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| CDS-3UTR TCA 90 bp | TTTAGATATCATAATAAATATCACACTGCCCGTGGGGAACTTCAGGGGGAAATAGACACTGGCTGCTTGTaGTTCTCCTGTAGCTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: FRYHNKYHTARGELQGEIDTGCL*FSCSSS Trigger: TGAAGAGCTACAGGAGAATCACAAGCAGCCAGTGTC...TATTTCCCCCTGAAGTTCCCCACGGGCAGTGTGATATTTATTATGATATCTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000194.4 |
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| CDS-3UTR CCA 90 bp | TTTAGATATCATAATAAATATCACACTGCCCGTGGGGAACTTCAGGGGGAAATAGACGTCTTATCCAAGTaGTTTATGGAATTCTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: FRYHNKYHTARGELQGEIDVLSK*FMEFLT Trigger: GGTTAAGAATTCCATAAACCACTTGGATAAGACGTC...TATTTCCCCCTGAAGTTCCCCACGGGCAGTGTGATATTTATTATGATATCTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000194.4 |
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| CDS TCA 72 bp | ACTGGGGTGCTCACCGCATCTGGTCCAGCCAATACCTaGGGACTGATGGTGGTAGCTATGAGCAGGAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: TGVLTASGPANT*GLMVVAMSRRH Trigger: ATGCCTCCTGCTCATAGCTACCACCATCAGTCCTCAGGTATTGGCTGGACCAGATGCGGTGAGCACCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000194.4 |
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