Pregenerated sensors for CCL11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020676Ensembl transcript IDs: ENSMUST00000000342.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAGTCAGGACTTCCAGTCCCATCTaGAACTACATGAAGCCAAGT | + |
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Preference number: 2 (lower is better) Translates to: FCEFEVSLVYTVSYRSVRTSSPI*NYMKPS Trigger: ACTTGGCTTCATGTAGTTCCAGATGGGACTGGAAGT...CCTGACTGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| 3UTR-3UTR CCA 90 bp | CTACACAGTGAGTTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAAGCAGTTCTTAGGCTCTaGGTTAGTGTCAAGAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: LHSELQVSQGDTVSPCFKAVLRL*VSVKRG Trigger: TCCTCTCTTGACACTAACCCAGAGCCTAAGAACTGC...TTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAACTCACTGTGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| 3UTR-3UTR GCA 90 bp | TTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAGTCAGGCCCCTTTTAAGATGTTaGATATGCAAGAAATTACAC | + |
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Preference number: 2 (lower is better) Translates to: FCEFEVSLVYTVSYRSVRPLLRC*ICKKLH Trigger: GTGTAATTTCTTGCATATGCAACATCTTAAAAGGGG...CCTGACTGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| 3UTR TCA 72 bp | TACACAGTGAGTTACAGGTCAGTCAGGGTGATACAGTaGGTCCCTGTTTCAAACAAGCAAGCAAACAAACAA | + |
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Preference number: 3 (lower is better) Translates to: YTVSYRSVRVIQ*VPVSNKQANKQ Trigger: TTGTTTGTTTGCTTGCTTGTTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAACTCACTGTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| 3UTR-3UTR CAA 90 bp | TTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAACAAGCAAGCAAACCCCCTTTTAAGATGTaGCATATGCAAGAAATTACA | + |
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Preference number: 3 (lower is better) Translates to: LQVSQGDTVSPCFKQASKPPFKM*HMQEIT Trigger: TGTAATTTCTTGCATATGCAACATCTTAAAAGGGGG...TTTGCTTGCTTGTTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| 3UTR GCA 72 bp | CCATTGTGTTCCTCAATAATCCCACATCTCCTTTCATaGCCCCCTTTTAAGATGTTGCATATGCAAGAAATT | + |
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Preference number: 3 (lower is better) Translates to: PLCSSIIPHLLS*PPFKMLHMQEI Trigger: AATTTCTTGCATATGCAACATCTTAAAAGGGGGGCATGAAAGGAGATGTGGGATTATTGAGGAACACAATGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR TCA 90 bp | TGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAGTCAGGGTGGGGATGGAGCCTGGGTaGGCCAGCACCTGGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: CEFEVSLVYTVSYRSVRVGMEPG*ASTWEV Trigger: CACCTCCCAGGTGCTGGCTCACCCAGGCTCCATCCC...CACCCTGACTGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | TGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAGTCAGGGTGAGTTGGGATGGAGCCTaGGTGAGCCAGCACCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: CEFEVSLVYTVSYRSVRVSWDGA*VSQHLG Trigger: TCCCAGGTGCTGGCTCACCCAGGCTCCATCCCAACT...CACCCTGACTGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | TGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAGTCAGGGTGAAAGCAGCAGGAAGTTaGGATGGAGCCTGGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: CEFEVSLVYTVSYRSVRVKAAGS*DGAWVS Trigger: GCTCACCCAGGCTCCATCCCAACTTCCTGCTGCTTT...CACCCTGACTGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | GTAAATTTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAAGCAGGAAGTTGGGATaGAGCCTGGGTGAGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: VNFCEFEVSLVYTVSYRSSRKLG*SLGEPA Trigger: TGCTGGCTCACCCAGGCTCCATCCCAACTTCCTGCT...TGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAAATTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | CTACACAGTGAGTTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAAGGTCCAGGTGCTTTGTaGCATCCTGGACCCACTTCT | + |
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Preference number: 4 (lower is better) Translates to: LHSELQVSQGDTVSPCFKGPGAL*HPGPTS Trigger: AGAAGTGGGTCCAGGATGCCACAAAGCACCTGGACC...TTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAACTCACTGTGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR TCA 90 bp | GTAAATTTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCATGCCCAACCTGGTCTTaGAGACTATGGCTTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VNFCEFEVSLVYTVSYRSCPTWS*RLWLSG Trigger: CCCTGAAAGCCATAGTCTTCAAGACCAGGTTGGGCA...TGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAAATTTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | TTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAACAAGCAAGCAAATGCTTTGTGGCATCCTaGACCCACTTCTTCTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: LQVSQGDTVSPCFKQASKCFVAS*THFFLG Trigger: CCCCAAGAAGAAGTGGGTCCAGGATGCCACAAAGCA...TTTGCTTGCTTGTTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR GCA 90 bp | TTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAACAAGCAAGCAAAAGTTTTTGGTCCAGGTaGTTTGTGGCATCCTGGACC | + |
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Preference number: 4 (lower is better) Translates to: LQVSQGDTVSPCFKQASKSFWSR*FVASWT Trigger: GGTCCAGGATGCCACAAAGCACCTGGACCAAAAACT...TTTGCTTGCTTGTTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | TTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAACAAGCAAGCAAAGGAGTTTGGAGTTTTTaGTCCAGGTGCTTTGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LQVSQGDTVSPCFKQASKGVWSF*SRCFVA Trigger: TGCCACAAAGCACCTGGACCAAAAACTCCAAACTCC...TTTGCTTGCTTGTTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | AGGCAGGTAAATTTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACTATGGTTTTGGAGTTTaGAGTTTTTGGTCCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: RQVNFCEFEVSLVYTVSYYGFGV*SFWSRC Trigger: GCACCTGGACCAAAAACTCCAAACTCCAAAACCATA...GTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAAATTTACCTGCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR TCA 90 bp | TCAGAGCACGTCTTAGGAAAGAGAAGGAATCAAGCAGTTCTTAGGCTCTGGGTTTGCATCTGTTGTTGGTaGTTCTTTTGTAGCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SEHVLGKRRNQAVLRLWVCICCW*FFCSSS Trigger: TGAAGAGCTACAAAAGAATCACCAACAACAGATGCA...AACCCAGAGCCTAAGAACTGCTTGATTCCTTCTCTTTCCTAAGACGTGCTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CCA 90 bp | GTAAATTTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCATCTTCAGTAGTGTGTTaGGGATCTTCTTACTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: VNFCEFEVSLVYTVSYRSSSVVC*GSSYWS Trigger: TGACCAGTAAGAAGATCCCCAACACACTACTGAAGA...TGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAAATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CAA 90 bp | TCAGAGCACGTCTTAGGAAAGAGAAGGAATCAAGCAGTTCTTAGGCTCTGGGTTTTTGGTCCAGGTGCTTaGTGGCATCCTGGACCCACT | + |
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Preference number: 5 (lower is better) Translates to: SEHVLGKRRNQAVLRLWVFGPGA*WHPGPT Trigger: AGTGGGTCCAGGATGCCACAAAGCACCTGGACCAAA...AACCCAGAGCCTAAGAACTGCTTGATTCCTTCTCTTTCCTAAGACGTGCTCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CAA 90 bp | CTACACAGTGAGTTACAGGTCAGTCAGGGTGATACAGTGAGTCCCTGTTTCAAATTGCCCAACCTGGTCTaGAAGACTATGGCTTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: LHSELQVSQGDTVSPCFKLPNLV*KTMAFR Trigger: CCTGAAAGCCATAGTCTTCAAGACCAGGTTGGGCAA...TTTGAAACAGGGACTCACTGTATCACCCTGACTGACCTGTAACTCACTGTGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CAA 90 bp | GTAAATTTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCATGGAGTTTGGAGTTTTaGGTCCAGGTGCTTTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: VNFCEFEVSLVYTVSYRSWSLEF*VQVLCG Trigger: GCCACAAAGCACCTGGACCAAAAACTCCAAACTCCA...TGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAAATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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| CDS-3UTR CAA 90 bp | TTCTGTGAGTTTGAGGTCAGCCTGGTCTACACAGTGAGTTACAGGTCAGTCAGGTTATGGTTTTGGAGTTaGGAGTTTTTGGTCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: FCEFEVSLVYTVSYRSVRLWFWS*EFLVQV Trigger: CACCTGGACCAAAAACTCCAAACTCCAAAACCATAA...CCTGACTGACCTGTAACTCACTGTGTAGACCAGGCTGACCTCAAACTCACAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000342.3 |
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