Pregenerated sensors for CCL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020702Ensembl transcript IDs: ENSMUST00000021043.5, ENSMUST00000108189.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCAGTGGGATGCAGTCTCTGGTGCTaGGATGGGAAGGTGGCTCAT | + |
|
Preference number: 2 (lower is better) Translates to: YHMTEVCEPAAVGVAAVGCSLWC*DGKVAH Trigger: ATGAGCCACCTTCCCATCCCAGCACCAGAGACTGCA...TCCCACTGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||
| 3UTR-3UTR CCA 90 bp | TATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCAGTGGGAGGAAACTGCAGTCTCTaGTGCTGGGATGGGAAGGTG | + |
|
Preference number: 2 (lower is better) Translates to: YHMTEVCEPAAVGVAAVGGNCSL*CWDGKV Trigger: CACCTTCCCATCCCAGCACCAGAGACTGCAGTTTCC...TCCCACTGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||
| 3UTR-3UTR TCA 90 bp | GCTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCACCTTCTTTCAGCCTGAATCTGTaGACAGAAGACACGGACAAG | + |
|
Preference number: 2 (lower is better) Translates to: AGMGRWLIFTPVSRGSPSFSLNL*TEDTDK Trigger: CTTGTCCGTGTCTTCTGTTCACAGATTCAGGCTGAA...AGAAGGTGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| 3UTR-3UTR TCA 90 bp | GCTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCACCTTCTTACCTTTGTTCAGCCTaGATCTGTGAACAGAAGACA | + |
|
Preference number: 2 (lower is better) Translates to: AGMGRWLIFTPVSRGSPSYLCSA*ICEQKT Trigger: TGTCTTCTGTTCACAGATTCAGGCTGAACAAAGGTA...AGAAGGTGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| 3UTR TCA 72 bp | CTTCTTCAGGTGATTTTGAACCCACGTTTTGTTAGTTaGGGCGCAGCTTTCTCTACCTTTGTTCAGCCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: LLQVILNPRFVS*GAAFSTFVQPE Trigger: TTCAGGCTGAACAAAGGTAGAGAAAGCTGCGCCTCAACTAACAAAACGTGGGTTCAAAATCACCTGAAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR TCA 90 bp | CTGGTGCTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCACGAGACCAGGGACCCCTaGACTCCTGACTACCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: LVLGWEGGSSSPRLAGVHETRDP*TPDYHS Trigger: GCTGTGGTAGTCAGGAGTTCAGGGGTCCCTGGTCTC...GTGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAGCACCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR TCA 90 bp | TCTGGTGCTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCAGGACCCCTGAACTCCTaGCTACCACAGCTGGGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SGAGMGRWLIFTPVSRGSGPLNS*LPQLGD Trigger: ATCCCCCAGCTGTGGTAGTCAGGAGTTCAGGGGTCC...TGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAGCACCAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR CCA 90 bp | GCTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCACCTTCTCCTGACTACCACAGCTaGGGGATCAGGACAGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: AGMGRWLIFTPVSRGSPSPDYHS*GIRTGG Trigger: TCCTCCTGTCCTGATCCCCCAGCTGTGGTAGTCAGG...AGAAGGTGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR TCA 90 bp | GCTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCACCTTCTTCTTCTCTGCTTCTGTaGGACCAGGGACCCCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: AGMGRWLIFTPVSRGSPSSSLLL*DQGPLN Trigger: GTTCAGGGGTCCCTGGTCTCACAGAAGCAGAGAAGA...AGAAGGTGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR CCA 90 bp | GCTTATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCAGTGCCTGAATACCACAGCTaGGGGATCAGGACAGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: AYHMTEVCEPAAVGVAAVPEYHS*GIRTGG Trigger: TCCTCCTGTCCTGATCCCCCAGCTGTGGTATTCAGG...CACTGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108189.9 |
||
| CDS-3UTR GCA 90 bp | CTGGGATGGGAAGGTGGCTCATCTTCACCCCGGTTAGCAGGGGTTCACCTTCTTCAGCAGGCACATCAGTaGCATGGCAGTGGGTTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: LGWEGGSSSPRLAGVHLLQQAHQ*HGSGFH Trigger: ATGAAACCCACTGCCATGGCACTGATGTGCCTGCTG...AAGAAGGTGAACCCCTGCTAACCGGGGTGAAGATGAGCCACCTTCCCATCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR GCA 90 bp | ATAGCTTATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCACAGCAGGCACATCAGTaGCATGGCAGTGGGTTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: IAYHMTEVCEPAAVGVAAQQAHQ*HGSGFH Trigger: ATGAAACCCACTGCCATGGCACTGATGTGCCTGCTG...TGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATAAGCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||
| CDS-3UTR GCA 90 bp | TATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCAGTGGGATGTAACAGTCTTCTCTaGTTCTGTGAGACCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: YHMTEVCEPAAVGVAAVGCNSLL*FCETRD Trigger: GTCCCTGGTCTCACAGAAGCAGAGAAGACTGTTACA...TCCCACTGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS-3UTR CAA 90 bp | GCTTATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCAGTGTTCAAGCAGCAGCTATaGGAGACCGTAAGCATGCTC | + |
|
Preference number: 5 (lower is better) Translates to: AYHMTEVCEPAAVGVAAVFKQQL*ETVSML Trigger: GAGCATGCTTACGGTCTCCAATAGCTGCTGCTTGAA...CACTGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||
| CDS-3UTR CAA 90 bp | ATAGCTTATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCATTCAAGCAGCAGCTATaGGAGACCGTAAGCATGCTC | + |
|
Preference number: 5 (lower is better) Translates to: IAYHMTEVCEPAAVGVAAFKQQL*ETVSML Trigger: GAGCATGCTTACGGTCTCCAATAGCTGCTGCTTGAA...TGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATAAGCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||
| CDS-3UTR CAA 90 bp | GCTTATCACATGACTGAGGTCTGTGAGCCTGCAGCAGTAGGGGTGGCGGCAGTGCAGCTTTCTCTACCTTaGTTCAGCCTGAATACCACA | + |
|
Preference number: 5 (lower is better) Translates to: AYHMTEVCEPAAVGVAAVQLSLP*FSLNTT Trigger: TGTGGTATTCAGGCTGAACAAAGGTAGAGAAAGCTG...CACTGCCGCCACCCCTACTGCTGCAGGCTCACAGACCTCAGTCATGTGATAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108189.9 |
||
| CDS TCA 72 bp | AACAGTCTTCTCTGCTTCTGTGAGACCAGGGACCCCTaGACTCCTGACTACCACAGCTGGGGGATCAGGACA | + |
|
Preference number: 6 (lower is better) Translates to: NSLLCFCETRDP*TPDYHSWGIRT Trigger: TGTCCTGATCCCCCAGCTGTGGTAGTCAGGAGTTCAGGGGTCCCTGGTCTCACAGAAGCAGAGAAGACTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021043.5 |
||
| CDS CAA 72 bp | TTCAAGCAGCAGCTATTGGAGACCGTAAGCATGCTCTaGCTGTCAACATCCTGTATCCACACGGCAGCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: FKQQLLETVSML*LSTSCIHTAAS Trigger: GCTGGCTGCCGTGTGGATACAGGATGTTGACAGCAAGAGCATGCTTACGGTCTCCAATAGCTGCTGCTTGAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||
| CDS CAA 90 bp | AACTTCAGGGGAAGCTCTTTCTTCAAGGTGTTCAAGCAGCAGCTATaGGAGACCGTAAGCATGCTCTTGCTGTCAACATCCTGTATCCAC | + |
|
Preference number: 6 (lower is better) Translates to: NFRGSSFFKVFKQQL*ETVSMLLLSTSCIH Trigger: GTGGATACAGGATGTTGACAGCAAGAGCATGCTTACGGTCTCCAATAGCTGCTGCTTGAACACCTTGAAGAAAGAGCTTCCCCTGAAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021043.5 ENSMUST00000108189.9 |
||