Pregenerated sensors for CCKBR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030898Ensembl transcript IDs: ENSMUST00000033189.6, ENSMUST00000181339.8
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGTGTCCCAGCTACTACATCACCGGAGTAGGGTTAGGTCCCAGATaGCAATCAAGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCG | + |
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Preference number: 1 (lower is better) Translates to: VCPSYYITGVGLGPR*QSREDTLISFCTRS Trigger: CGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCTTGATTGTCATCTGGGACCTAACCCTACTCCGGTGATGTAGTAGCTGGGACACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR GCA 90 bp | GAGCAAACAGATAAAGATGTTTCCCATAAACCACACCTGCTCACCTaGCCACCAAAGCCCAGGAAGTCCAGGAGGACGCTAAGTCACTTA | + |
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Preference number: 1 (lower is better) Translates to: EQTDKDVSHKPHLLT*PPKPRKSRRTLSHL Trigger: TAAGTGACTTAGCGTCCTCCTGGACTTCCTGGGCTTTGGTGGGCAGGTGAGCAGGTGTGGTTTATGGGAAACATCTTTATCTGTTTGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR GCA 90 bp | CCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTTACTaGTATGGACCGTATGTCTGTCTATGTAATGGGGTCAGTGCCAGA | + |
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Preference number: 1 (lower is better) Translates to: PISPCQSSPCIGKVY*YGPYVCLCNGVSAR Trigger: TCTGGCACTGACCCCATTACATAGACAGACATACGGTCCATAGCAGTAAACTTTCCCTATACAAGGGGAACTCTGACAAGGGCTGATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR-3UTR GCA 90 bp | GACAATCAAGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTCCCATAAACCACACCTaGTCACCTGCCCACCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: DNQGRIRSSLFAQGRTWGPINHT*SPAHQS Trigger: GCTTTGGTGGGCAGGTGAGCAGGTGTGGTTTATGGG...ACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCTTGATTGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTTACTGCTATGGACCGTATCCTGTCTGTTTCAGGTaGGGCAGCAAAGATACTGCT | + |
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Preference number: 2 (lower is better) Translates to: SPCQSSPCIGKVYCYGPYPVCFR*GSKDTA Trigger: AGCAGTATCTTTGCTGCCCCACCTGAAACAGACAGG...ATACGGTCCATAGCAGTAAACTTTCCCTATACAAGGGGAACTCTGACAAGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR CAA 90 bp | AGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTaGAATAGTCATGGGAGCAAACAGATAAAGATGTTTCCCATAAAC | + |
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Preference number: 2 (lower is better) Translates to: REDTLISFCTRSDMG*NSHGSKQIKMFPIN Trigger: GTTTATGGGAAACATCTTTATCTGTTTGCTCCCATGACTATTCAACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTTACTGCTATGGACCGTATATGTTGGGTACCACCTaGATTAATCCCGGATTTTGT | + |
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Preference number: 2 (lower is better) Translates to: SPCQSSPCIGKVYCYGPYMLGTT*INPGFC Trigger: ACAAAATCCGGGATTAATTCAGGTGGTACCCAACAT...ATACGGTCCATAGCAGTAAACTTTCCCTATACAAGGGGAACTCTGACAAGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR GCA 72 bp | GATAAAGATGTTTCCCATAAACCACACCTGCTCACCTaGCCACCAAAGCCCAGGAAGTCCAGGAGGACGCTA | + |
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Preference number: 3 (lower is better) Translates to: DKDVSHKPHLLT*PPKPRKSRRTL Trigger: TAGCGTCCTCCTGGACTTCCTGGGCTTTGGTGGGCAGGTGAGCAGGTGTGGTTTATGGGAAACATCTTTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR TCA 72 bp | CGATGGCACCAAATGAGAGGGTGTACTCAGGAGTCATaGAGTGTCATGGATATCCCACCTGCCACAGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: RWHQMRGCTQES*SVMDIPPATVC Trigger: ACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTACACCCTCTCATTTGGTGCCATCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR GCA 72 bp | TACTCAGGAGTCATGAAGTGTCATGGATATCCCACCTaGCACAGTGTGTCCCAGCTACTACATCACCGGAGT | + |
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Preference number: 3 (lower is better) Translates to: YSGVMKCHGYPT*HSVSQLLHHRS Trigger: ACTCCGGTGATGTAGTAGCTGGGACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR CCA 72 bp | CAGTGCTGGATAAGGAAGGCAATGATGAGGTCAAACTaGGGACAGCTGCAATGTCCTAAGTCACTACCGCAC | + |
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Preference number: 3 (lower is better) Translates to: QCWIRKAMMRSN*GQLQCPKSLPH Trigger: GTGCGGTAGTGACTTAGGACATTGCAGCTGTCCCCAGTTTGACCTCATCATTGCCTTCCTTATCCAGCACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR GCA 72 bp | AGCAAACAGATAAAGATGTTTCCCATAAACCACACCTaGTCACCTGCCCACCAAAGCCCAGGAAGTCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: SKQIKMFPINHT*SPAHQSPGSPG Trigger: TCCTGGACTTCCTGGGCTTTGGTGGGCAGGTGAGCAGGTGTGGTTTATGGGAAACATCTTTATCTGTTTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR TCA 72 bp | AGCTACTACATCACCGGAGTAGGGTTAGGTCCCAGATaGCAATCAAGGGAGGATACGCTCATCTCTTTTTGC | + |
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Preference number: 3 (lower is better) Translates to: SYYITGVGLGPR*QSREDTLISFC Trigger: GCAAAAAGAGATGAGCGTATCCTCCCTTGATTGTCATCTGGGACCTAACCCTACTCCGGTGATGTAGTAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR GCA 72 bp | CCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTTACTaGTATGGACCGTATGTCTGTCTATGTAATGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: PCQSSPCIGKVY*YGPYVCLCNGV Trigger: GACCCCATTACATAGACAGACATACGGTCCATAGCAGTAAACTTTCCCTATACAAGGGGAACTCTGACAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR TCA 72 bp | CAAAGATACTGCTTTCTGTGTGTAGGGGTCTGTCCATaGTGTTGGGTACCACCTGAATTAATCCCGGATTTT | + |
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Preference number: 3 (lower is better) Translates to: QRYCFLCVGVCP*CWVPPELIPDF Trigger: AAAATCCGGGATTAATTCAGGTGGTACCCAACATCATGGACAGACCCCTACACACAGAAAGCAGTATCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | ATCCCACCTGCCACAGTGTGTCCCAGCTACTACATCACCGGAGTAGGGTTAGGTCTGGTGGACAGGCCCTaGTGCTGCTGCCCCACCCGG | + |
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Preference number: 4 (lower is better) Translates to: IPPATVCPSYYITGVGLGLVDRP*CCCPTR Trigger: CCGGGTGGGGCAGCAGCACCAGGGCCTGTCCACCAG...ACCTAACCCTACTCCGGTGATGTAGTAGCTGGGACACACTGTGGCAGGTGGGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GTACTCAGGAGTCATGAAGTGTCATGGATATCCCACCTGCCACAGTGTGTCCCACCGTGGGCGAGCTCGTaGAGGGCGTGGGCAACAGCG | + |
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Preference number: 4 (lower is better) Translates to: VLRSHEVSWISHLPQCVPPWASS*RAWATA Trigger: CGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGG...TGGGACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR TCA 90 bp | GTGTACTCATGTGAGAAGCCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGCGGCGCTACTGCTGTTaGGGAGGGAGACACCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: VYSCEKPISPCQSSPCIGRRYCC*GGRHPG Trigger: GCCCGGGTGTCTCCCTCCTCAACAGCAGTAGCGCCG...CCCTATACAAGGGGAACTCTGACAAGGGCTGATTGGCTTCTCACATGAGTACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | TATGTAAGACTCCTGTCTGTTTCAGGTGGGGCAGCAAAGATACTGCTTTCTGTGGTGGACAGGCCCTGGTaGTGCTGCCCCACCCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: YVRLLSVSGGAAKILLSVVDRPW*CCPTRQ Trigger: CTGCCGGGTGGGGCAGCAGCACCAGGGCCTGTCCAC...CACAGAAAGCAGTATCTTTGCTGCCCCACCTGAAACAGACAGGAGTCTTACATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GTACTCAGGAGTCATGAAGTGTCATGGATATCCCACCTGCCACAGTGTGTCCCAGCAGTGGTCGGCAGATaGCGCTGTATCGCTCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VLRSHEVSWISHLPQCVPAVVGR*RCIAPG Trigger: CCCTGGAGCGATACAGCGCCATCTGCCGACCACTGC...TGGGACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGACTCCTGCAGCTTGGCCTGGTTaGGCCGAGGGCCAGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GRTQSHIRSEPLFLCKTPAAWPG*AEGQGL Trigger: CAGGCCCTGGCCCTCGGCCCAACCAGGCCAAGCTGC...AGGAGTCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | GTACTCAGGAGTCATGAAGTGTCATGGATATCCCACCTGCCACAGTGTGTCCCATGCCACACTCGTGCTTaGAGTGGTCGGCAGATGGCG | + |
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Preference number: 4 (lower is better) Translates to: VLRSHEVSWISHLPQCVPCHTRA*SGRQMA Trigger: CGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCA...TGGGACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | GTACTCAGGAGTCATGAAGTGTCATGGATATCCCACCTGCCACAGTGTGTCCCAGCGTGGGAGCGTGTCTaGCACACTCGTGCTTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: VLRSHEVSWISHLPQCVPAWERV*HTRACS Trigger: ACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGC...TGGGACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | CTCTTTTCCTATGTAAGACTCCTGTCTGTTTCAGGTGGGGCAGCAAAGATACTGCGAGGCCCCACTGGCTaGACCACGGTGTACACGGGG | + |
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Preference number: 4 (lower is better) Translates to: LFSYVRLLSVSGGAAKILRGPTG*TTVYTG Trigger: CCCCGTGTACACCGTGGTGCAGCCAGTGGGGCCTCG...CAGTATCTTTGCTGCCCCACCTGAAACAGACAGGAGTCTTACATAGGAAAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | TCTAGGGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGAGACAGGCCCTGGTGCTaGTGCCCCACCCGGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: SREGLSPISEVSLFSYVRDRPWC*CPTRQT Trigger: GGTCTGCCGGGTGGGGCAGCAGCACCAGGGCCTGTC...TCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCCCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | TCTGTTTCAGGTGGGGCAGCAAAGATACTGCTTTCTGTGTGTAGGGGTCTGTCCATCACCCGAGCTGCGTaGGAGCGTGTCTGCCACACT | + |
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Preference number: 4 (lower is better) Translates to: SVSGGAAKILLSVCRGLSITRAA*ERVCHT Trigger: AGTGTGGCAGACACGCTCCCACGCAGCTCGGGTGAT...GGACAGACCCCTACACACAGAAAGCAGTATCTTTGCTGCCCCACCTGAAACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | TCTAGGGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGAGCCAGCAGCTTGGCCTaGTTGGGCCGAGGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SREGLSPISEVSLFSYVRASSLA*LGRGPG Trigger: CCCTGGCCCTCGGCCCAACCAGGCCAAGCTGCTGGC...TCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCCCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GACAATCAAGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTAGGCACGCCACGTGTTaGCGCTGTACACTGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: DNQGRIRSSLFAQGRTWGRHATC*RCTLAA Trigger: GGCTGCCAGTGTACAGCGCCAACACGTGGCGTGCCT...ACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCTTGATTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGACTCCTATCCGGAAGAGGCCGTaGGCGAGCTCGTGGAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: GRTQSHIRSEPLFLCKTPIRKRP*ASSWRA Trigger: CGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGAT...AGGAGTCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGACTCCTCCCGGCAGACCCCCTTaGTTTCGGACCCGGCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: GRTQSHIRSEPLFLCKTPPGRPP*FRTRLW Trigger: CCAAAGCCGGGTCCGAAACCAAGGGGGTCTGCCGGG...AGGAGTCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR TCA 90 bp | TCAAGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTTGAATGGTTGGGCAGGAGTGTaGAGGGCATGCAAGCGACAG | + |
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Preference number: 4 (lower is better) Translates to: SREDTLISFCTRSDMGLNGWAGV*RACKRQ Trigger: CTGTCGCTTGCATGCCCTTCACACTCCTGCCCAACC...ATTCAACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GACAATCAAGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTCAGACAGCAGCCACGTaGCTAAGATCACCCGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: DNQGRIRSSLFAQGRTWGQTAAT*LRSPEL Trigger: CAGCTCGGGTGATCTTAGCCACGTGGCTGCTGTCTG...ACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCTTGATTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | AAGCCCAGGAAGTCCAGGAGGACGCTAAGTCACTTATACTTTTATGATGTGGTCCAACCCCCGTTCTGGTaGACAGGCCCTGGTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KPRKSRRTLSHLYFYDVVQPPFW*TGPGAA Trigger: AGCAGCACCAGGGCCTGTCCACCAGAACGGGGGTTG...GACCACATCATAAAAGTATAAGTGACTTAGCGTCCTCCTGGACTTCCTGGGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | ACTTTAACGATGGCACCAAATGAGAGGGTGTACTCAGGAGTCATGAAGTGTCATGTGTCCAGGCAGGCCTaGCGGAATCGGCGGTGCATG | + |
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Preference number: 4 (lower is better) Translates to: TLTMAPNERVYSGVMKCHVSRQA*RNRRCM Trigger: CATGCACCGCCGATTCCGCCAGGCCTGCCTGGACAC...ATGACACTTCATGACTCCTGAGTACACCCTCTCATTTGGTGCCATCGTTAAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR TCA 90 bp | ACTTTAACGATGGCACCAAATGAGAGGGTGTACTCAGGAGTCATGAAGTGTCATGCACAAAGAAGACCCTaGCCCGGGTCCTGGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: TLTMAPNERVYSGVMKCHAQRRP*PGSWSL Trigger: CAGGGACCAGGACCCGGGTCAGGGTCTTCTTTGTGC...ATGACACTTCATGACTCCTGAGTACACCCTCTCATTTGGTGCCATCGTTAAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | TCTAGGGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGACCGGGTCCTGGTCCCTaGAAGCTGCGGTTCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SREGLSPISEVSLFSYVRPGPGP*KLRFSL Trigger: CAAGCTGAACCGCAGCTTGCAGGGACCAGGACCCGG...TCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCCCTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | GACAATCAAGGGAGGATACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTTGTCTGCCACACTCGTaGTTGCAGTGGTCGGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: DNQGRIRSSLFAQGRTWGCLPHS*LQWSAD Trigger: ATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACA...ACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGTATCCTCCCTTGATTGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GTGTACTCATGTGAGAAGCCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGAGTAGACCAGGGGGTTaGCACAAGCAGAGGTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VYSCEKPISPCQSSPCIGSRPGG*HKQRCS Trigger: GCTACACCTCTGCTTGTGCCAACCCCCTGGTCTACT...CCCTATACAAGGGGAACTCTGACAAGGGCTGATTGGCTTCTCACATGAGTACAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR TCA 90 bp | TCATGTGAGAAGCCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTGGAATCGGCGGTGCATaGAACAGTAGACCAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: SCEKPISPCQSSPCIGKVGIGGA*NSRPGG Trigger: ACCCCCTGGTCTACTGTTTCATGCACCGCCGATTCC...AACTTTCCCTATACAAGGGGAACTCTGACAAGGGCTGATTGGCTTCTCACATGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGACTCCTCACTCGTGCTTGCAGTaGTCGGCAGATGGCGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: GRTQSHIRSEPLFLCKTPHSCLQ*SADGAV Trigger: TACAGCGCCATCTGCCGACCACTGCAAGCACGAGTG...AGGAGTCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | CTCTTTTCCTATGTAAGACTCCTGTCTGTTTCAGGTGGGGCAGCAAAGATACTGTATTCGAGGCCCCACTaGCTGCACCACGGTGTACAC | + |
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Preference number: 4 (lower is better) Translates to: LFSYVRLLSVSGGAAKILYSRPH*LHHGVH Trigger: GTGTACACCGTGGTGCAGCCAGTGGGGCCTCGAATA...CAGTATCTTTGCTGCCCCACCTGAAACAGACAGGAGTCTTACATAGGAAAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR TCA 90 bp | TCATGTGAGAAGCCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTAGTGGACACACTCACTaGTACCCCCATGAGGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: SCEKPISPCQSSPCIGKVSGHTH*YPHEVG Trigger: TCCTACCTCATGGGGGTATCAGTGAGTGTGTCCACT...AACTTTCCCTATACAAGGGGAACTCTGACAAGGGCTGATTGGCTTCTCACATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR CCA 90 bp | GGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGACTCCTTGGTATAGCTTAGCCTaGACAGAGAAGCGATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GRTQSHIRSEPLFLCKTPWYSLA*TEKRWR Trigger: CCTCCATCGCTTCTCTGTCCAGGCTAAGCTATACCA...AGGAGTCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS-3UTR GCA 90 bp | ACTTTAACGATGGCACCAAATGAGAGGGTGTACTCAGGAGTCATGAAGTGTCATTCACTGGGCCAGAGATaGATGCACTGCAGTATTCGA | + |
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Preference number: 4 (lower is better) Translates to: TLTMAPNERVYSGVMKCHSLGQR*MHCSIR Trigger: TCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGA...ATGACACTTCATGACTCCTGAGTACACCCTCTCATTTGGTGCCATCGTTAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR CAA 72 bp | ATCTGCGGCTCCGAAAGGCATGTGATTTTAGGCCTGTaGATAATTTCAGTGCTGGATAAGGAAGGCAATGAT | + |
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Preference number: 4 (lower is better) Translates to: ICGSERHVILGL*IISVLDKEGND Trigger: ATCATTGCCTTCCTTATCCAGCACTGAAATTATCAACAGGCCTAAAATCACATGCCTTTCGGAGCCGCAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR CAA 72 bp | ACGCTCATCTCTTTTTGCACAAGGTCGGACATGGGGTaGAATAGTCATGGGAGCAAACAGATAAAGATGTTT | + |
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Preference number: 4 (lower is better) Translates to: TLISFCTRSDMG*NSHGSKQIKMF Trigger: AAACATCTTTATCTGTTTGCTCCCATGACTATTCAACCCCATGTCCGACCTTGTGCAAAAAGAGATGAGCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| 3UTR CAA 72 bp | GTACCACCTGAATTAATCCCGGATTTTGTTATGTGTTaGGATGGGTCATTTTATAGTAGTTATGTATCTCAT | + |
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Preference number: 4 (lower is better) Translates to: VPPELIPDFVMC*DGSFYSSYVSH Trigger: ATGAGATACATAACTACTATAAAATGACCCATCCAAACACATAACAAAATCCGGGATTAATTCAGGTGGTAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS CCA 90 bp | GGGGGTAGGAGGATCCTCATCCGGAAGAGGCCGTGGGCGAGCTCGTaGAGGGCGTGGGCAACAGCGGGCACATGTGTCCAGGCAGGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: GGRRILIRKRPWASS*RAWATAGTCVQAGL Trigger: CAGGCCTGCCTGGACACATGTGCCCGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGATGAGGATCCTCCTACCCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 90 bp | CACCCGAGCTGCGTGGGAGCGTGTCTGCCACACTCGTGCTTGCAGTaGTCGGCAGATGGCGCTGTATCGCTCCAGGGCGATGGCCGCGAG | + |
|
Preference number: 5 (lower is better) Translates to: HPSCVGACLPHSCLQ*SADGAVSLQGDGRE Trigger: CTCGCGGCCATCGCCCTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CCA 90 bp | AGGATCCTCATCCGGAAGAGGCCGTGGGCGAGCTCGTGGAGGGCGTaGGCAACAGCGGGCACATGTGTCCAGGCAGGCCTGGCGGAATCG | + |
|
Preference number: 5 (lower is better) Translates to: RILIRKRPWASSWRA*ATAGTCVQAGLAES Trigger: CGATTCCGCCAGGCCTGCCTGGACACATGTGCCCGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGATGAGGATCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 90 bp | GTGGATGAAAGAGATAGGGGCCCCTGCGAGTGCTCGGCGCGCGCCTaGGCCATCGAAGGCACGCCACGTGTTGGCGCTGTACACTGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: VDERDRGPCECSARA*AIEGTPRVGAVHWQ Trigger: CTGCCAGTGTACAGCGCCAACACGTGGCGTGCCTTCGATGGCCCAGGCGCGCGCCGAGCACTCGCAGGGGCCCCTATCTCTTTCATCCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS GCA 90 bp | GGTGTAGCTCAGCAAGTGGATGAAAGAGATAGGGGCCCCTGCGAGTaGTCGGCGCGCGCCTGGGCCATCGAAGGCACGCCACGTGTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: GVAQQVDERDRGPCE*SARAWAIEGTPRVG Trigger: GCCAACACGTGGCGTGCCTTCGATGGCCCAGGCGCGCGCCGAGCACTCGCAGGGGCCCCTATCTCTTTCATCCACTTGCTGAGCTACACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 90 bp | AGAAGCGATGGAGGGGGTAGGAGGATCCTCATCCGGAAGAGGCCGTaGGCGAGCTCGTGGAGGGCGTGGGCAACAGCGGGCACATGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: RSDGGGRRILIRKRP*ASSWRAWATAGTCV Trigger: GACACATGTGCCCGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGATGAGGATCCTCCTACCCCCTCCATCGCTTCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS GCA 90 bp | AAGATCACCCGAGCTGCGTGGGAGCGTGTCTGCCACACTCGTGCTTaGAGTGGTCGGCAGATGGCGCTGTATCGCTCCAGGGCGATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KITRAAWERVCHTRA*SGRQMALYRSRAMA Trigger: GGCCATCGCCCTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTGATCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS TCA 90 bp | ACTGCTGTTGAGGAGGGAGACACCCGGGCGGCACAAAGAAGACCCTaGCCCGGGTCCTGGTCCCTGCAAGCTGCGGTTCAGCTTGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: TAVEEGDTRAAQRRP*PGSWSLQAAVQLEQ Trigger: CTGCTCAAGCTGAACCGCAGCTTGCAGGGACCAGGACCCGGGTCAGGGTCTTCTTTGTGCCGCCCGGGTGTCTCCCTCCTCAACAGCAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 90 bp | AGCAGCCACGTGGCTAAGATCACCCGAGCTGCGTGGGAGCGTGTCTaGCACACTCGTGCTTGCAGTGGTCGGCAGATGGCGCTGTATCGC | + |
|
Preference number: 5 (lower is better) Translates to: SSHVAKITRAAWERV*HTRACSGRQMALYR Trigger: GCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTGATCTTAGCCACGTGGCTGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CCA 90 bp | CGTGGGAGCGTGTCTGCCACACTCGTGCTTGCAGTGGTCGGCAGATaGCGCTGTATCGCTCCAGGGCGATGGCCGCGAGATTTAGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RGSVSATLVLAVVGR*RCIAPGRWPRDLEW Trigger: CCACTCTAAATCTCGCGGCCATCGCCCTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CCA 90 bp | GCGGAAGTTGCACGTAGCAGCCATCACTGTCTTCCCCAGTCAGGCTaGTCACATGCCGGCAACCCCCGTTCTGGTGGACAGGCCCTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: AEVARSSHHCLPQSG*SHAGNPRSGGQALV Trigger: CACCAGGGCCTGTCCACCAGAACGGGGGTTGCCGGCATGTGACCAGCCTGACTGGGGAAGACAGTGATGGCTGCTACGTGCAACTTCCGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS TCA 90 bp | AGCGGGCACATGTGTCCAGGCAGGCCTGGCGGAATCGGCGGTGCATaGAACAGTAGACCAGGGGGTTGGCACAAGCAGAGGTGTAGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SGHMCPGRPGGIGGA*NSRPGGWHKQRCSS Trigger: TGAGCTACACCTCTGCTTGTGCCAACCCCCTGGTCTACTGTTTCATGCACCGCCGATTCCGCCAGGCCTGCCTGGACACATGTGCCCGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 90 bp | AGCAATCCAGACAGCAGCCACGTGGCTAAGATCACCCGAGCTGCGTaGGAGCGTGTCTGCCACACTCGTGCTTGCAGTGGTCGGCAGATG | + |
|
Preference number: 5 (lower is better) Translates to: SNPDSSHVAKITRAA*ERVCHTRACSGRQM Trigger: CATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTGATCTTAGCCACGTGGCTGCTGTCTGGATTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 90 bp | GACCACATTTGTTGGACACGTTCACTGGGCCAGAGATGCATGCACTaGAGTATTCGAGGCCCCACTGGCTGCACCACGGTGTACACGGGG | + |
|
Preference number: 5 (lower is better) Translates to: DHICWTRSLGQRCMH*SIRGPTGCTTVYTG Trigger: CCCCGTGTACACCGTGGTGCAGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 90 bp | GCACGGACCACATTTGTTGGACACGTTCACTGGGCCAGAGATGCATaGACTGCAGTATTCGAGGCCCCACTGGCTGCACCACGGTGTACA | + |
|
Preference number: 5 (lower is better) Translates to: ARTTFVGHVHWARDA*TAVFEAPLAAPRCT Trigger: TGTACACCGTGGTGCAGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTCCGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 90 bp | AGAAGCACGGACCACATTTGTTGGACACGTTCACTGGGCCAGAGATaGATGCACTGCAGTATTCGAGGCCCCACTGGCTGCACCACGGTG | + |
|
Preference number: 5 (lower is better) Translates to: RSTDHICWTRSLGQR*MHCSIRGPTGCTTV Trigger: CACCGTGGTGCAGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTCCGTGCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS-3UTR CAA 90 bp | GTACTCAGGAGTCATGAAGTGTCATGGATATCCCACCTGCCACAGTGTGTCCCACTGCCACACTCGTGCTaGCAGTGGTCGGCAGATGGC | + |
|
Preference number: 5 (lower is better) Translates to: VLRSHEVSWISHLPQCVPLPHSC*QWSADG Trigger: GCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAG...TGGGACACACTGTGGCAGGTGGGATATCCATGACACTTCATGACTCCTGAGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 90 bp | GCAGTATTAGCAGAAGCACGGACCACATTTGTTGGACACGTTCACTaGGCCAGAGATGCATGCACTGCAGTATTCGAGGCCCCACTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: AVLAEARTTFVGHVH*ARDACTAVFEAPLA Trigger: AGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTCCGTGCTTCTGCTAATACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS-3UTR CAA 90 bp | TATGTAAGACTCCTGTCTGTTTCAGGTGGGGCAGCAAAGATACTGCTTTCTGTGACCCGGCAGACCCCCTaGGTTTCGGACCCGGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: YVRLLSVSGGAAKILLSVTRQTP*VSDPAL Trigger: CAAAGCCGGGTCCGAAACCAAGGGGGTCTGCCGGGT...CACAGAAAGCAGTATCTTTGCTGCCCCACCTGAAACAGACAGGAGTCTTACATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS-3UTR CAA 90 bp | TCATGTGAGAAGCCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGAAAGTTGTCTCGCAGCTGAGGTaGCCGGCGCTACTGCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SCEKPISPCQSSPCIGKVVSQLR*PALLLL Trigger: CAACAGCAGTAGCGCCGGCAACCTCAGCTGCGAGAC...AACTTTCCCTATACAAGGGGAACTCTGACAAGGGCTGATTGGCTTCTCACATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS-3UTR CAA 90 bp | GTGTACTCATGTGAGAAGCCAATCAGCCCTTGTCAGAGTTCCCCTTGTATAGGGCACGGACCACATTTGTaGGACACGTTCACTGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: VYSCEKPISPCQSSPCIGHGPHL*DTFTGP Trigger: TGGCCCAGTGAACGTGTCCAACAAATGTGGTCCGTG...CCCTATACAAGGGGAACTCTGACAAGGGCTGATTGGCTTCTCACATGAGTACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS-3UTR CAA 90 bp | ATCTCTTTTTGCACAAGGTCGGACATGGGGTTGAATAGTCATGGGAGCAAACAGAATGTGCCCATGAGGTaGGGCAGGAGTGTGAAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: ISFCTRSDMGLNSHGSKQNVPMR*GRSVKG Trigger: GCCCTTCACACTCCTGCCCAACCTCATGGGCACATT...CTGTTTGCTCCCATGACTATTCAACCCCATGTCCGACCTTGTGCAAAAAGAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 90 bp | GGGATGAAGAACAGCAGTATTAGCAGAAGCACGGACCACATTTGTTaGACACGTTCACTGGGCCAGAGATGCATGCACTGCAGTATTCGA | + |
|
Preference number: 5 (lower is better) Translates to: GMKNSSISRSTDHIC*TRSLGQRCMHCSIR Trigger: TCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTCCGTGCTTCTGCTAATACTGCTGTTCTTCATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS-3UTR CAA 90 bp | ATCTCTTTTTGCACAAGGTCGGACATGGGGTTGAATAGTCATGGGAGCAAACAGGTTTCGGACCCGGCTTaGGGTCTCGCTGTCATTATC | + |
|
Preference number: 5 (lower is better) Translates to: ISFCTRSDMGLNSHGSKQVSDPA*GLAVII Trigger: GATAATGACAGCGAGACCCAAAGCCGGGTCCGAAAC...CTGTTTGCTCCCATGACTATTCAACCCCATGTCCGACCTTGTGCAAAAAGAGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS-3UTR CAA 90 bp | TCTAGGGAAGGACTCAGTCCCATATCAGAAGTGAGCCTCTTTTCCTATGTAAGATCGGGAACGCGGAAGTaGCACGTAGCAGCCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: SREGLSPISEVSLFSYVRSGTRK*HVAAIT Trigger: AGTGATGGCTGCTACGTGCAACTTCCGCGTTCCCGA...TCTTACATAGGAAAAGAGGCTCACTTCTGATATGGGACTGAGTCCTTCCCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 72 bp | CCAGTCAGGCTGGTCACATGCCGGCAACCCCCGTTCTaGTGGACAGGCCCTGGTGCTGCTGCCCCACCCGGC | + |
|
Preference number: 6 (lower is better) Translates to: PVRLVTCRQPPF*WTGPGAAAPPG Trigger: GCCGGGTGGGGCAGCAGCACCAGGGCCTGTCCACCAGAACGGGGGTTGCCGGCATGTGACCAGCCTGACTGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 72 bp | GGAGGGGGTAGGAGGATCCTCATCCGGAAGAGGCCGTaGGCGAGCTCGTGGAGGGCGTGGGCAACAGCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GGGRRILIRKRP*ASSWRAWATAG Trigger: GCCCGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGATGAGGATCCTCCTACCCCCTCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 72 bp | AGAGATAGGGGCCCCTGCGAGTGCTCGGCGCGCGCCTaGGCCATCGAAGGCACGCCACGTGTTGGCGCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: RDRGPCECSARA*AIEGTPRVGAV Trigger: TACAGCGCCAACACGTGGCGTGCCTTCGATGGCCCAGGCGCGCGCCGAGCACTCGCAGGGGCCCCTATCTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 72 bp | ATCCGGAAGAGGCCGTGGGCGAGCTCGTGGAGGGCGTaGGCAACAGCGGGCACATGTGTCCAGGCAGGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: IRKRPWASSWRA*ATAGTCVQAGL Trigger: CAGGCCTGCCTGGACACATGTGCCCGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGAT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CAA 90 bp | TCTCTGGTCCCGGTTCCGCGGATACGAGGGGTCTCGCAGCTGAGGTaGCCGGCGCTACTGCTGTTGAGGAGGGAGACACCCGGGCGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: SLVPVPRIRGVSQLR*PALLLLRRETPGRH Trigger: GTGCCGCCCGGGTGTCTCCCTCCTCAACAGCAGTAGCGCCGGCAACCTCAGCTGCGAGACCCCTCGTATCCGCGGAACCGGGACCAGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 72 bp | CAGCAAGTGGATGAAAGAGATAGGGGCCCCTGCGAGTaGTCGGCGCGCGCCTGGGCCATCGAAGGCACGCCA | + |
|
Preference number: 6 (lower is better) Translates to: QQVDERDRGPCE*SARAWAIEGTP Trigger: TGGCGTGCCTTCGATGGCCCAGGCGCGCGCCGAGCACTCGCAGGGGCCCCTATCTCTTTCATCCACTTGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 72 bp | AGGATCCTCATCCGGAAGAGGCCGTGGGCGAGCTCGTaGAGGGCGTGGGCAACAGCGGGCACATGTGTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: RILIRKRPWASS*RAWATAGTCVQ Trigger: CTGGACACATGTGCCCGCTGTTGCCCACGCCCTCCACGAGCTCGCCCACGGCCTCTTCCGGATGAGGATCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CAA 72 bp | CCGGTTCCGCGGATACGAGGGGTCTCGCAGCTGAGGTaGCCGGCGCTACTGCTGTTGAGGAGGGAGACACCC | + |
|
Preference number: 6 (lower is better) Translates to: PVPRIRGVSQLR*PALLLLRRETP Trigger: GGGTGTCTCCCTCCTCAACAGCAGTAGCGCCGGCAACCTCAGCTGCGAGACCCCTCGTATCCGCGGAACCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CAA 90 bp | CGGATACGAGGGGTCTCGCAGCTGAGGTTGCCGGCGCTACTGCTGTaGAGGAGGGAGACACCCGGGCGGCACAAAGAAGACCCTGACCCG | + |
|
Preference number: 6 (lower is better) Translates to: RIRGVSQLRLPALLL*RRETPGRHKEDPDP Trigger: CGGGTCAGGGTCTTCTTTGTGCCGCCCGGGTGTCTCCCTCCTCAACAGCAGTAGCGCCGGCAACCTCAGCTGCGAGACCCCTCGTATCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 72 bp | CGAGCTGCGTGGGAGCGTGTCTGCCACACTCGTGCTTaGAGTGGTCGGCAGATGGCGCTGTATCGCTCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RAAWERVCHTRA*SGRQMALYRSR Trigger: CCTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 72 bp | CACCCGAGCTGCGTGGGAGCGTGTCTGCCACACTCGTaGTTGCAGTGGTCGGCAGATGGCGCTGTATCGCTC | + |
|
Preference number: 6 (lower is better) Translates to: HPSCVGACLPHS*LQWSADGAVSL Trigger: GAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CAA 72 bp | GGGGTCTCGCAGCTGAGGTTGCCGGCGCTACTGCTGTaGAGGAGGGAGACACCCGGGCGGCACAAAGAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: GVSQLRLPALLL*RRETPGRHKED Trigger: GTCTTCTTTGTGCCGCCCGGGTGTCTCCCTCCTCAACAGCAGTAGCGCCGGCAACCTCAGCTGCGAGACCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CAA 72 bp | CCGAGCTGCGTGGGAGCGTGTCTGCCACACTCGTGCTaGCAGTGGTCGGCAGATGGCGCTGTATCGCTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: PSCVGACLPHSC*QWSADGAVSLQ Trigger: CTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS GCA 72 bp | GTGGCTAAGATCACCCGAGCTGCGTGGGAGCGTGTCTaGCACACTCGTGCTTGCAGTGGTCGGCAGATGGCG | + |
|
Preference number: 6 (lower is better) Translates to: VAKITRAAWERV*HTRACSGRQMA Trigger: CGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTGATCTTAGCCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CCA 72 bp | GTGTCTGCCACACTCGTGCTTGCAGTGGTCGGCAGATaGCGCTGTATCGCTCCAGGGCGATGGCCGCGAGAT | + |
|
Preference number: 6 (lower is better) Translates to: VSATLVLAVVGR*RCIAPGRWPRD Trigger: ATCTCGCGGCCATCGCCCTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CCA 72 bp | TGCGTGGGAGCGTGTCTGCCACACTCGTGCTTGCAGTaGTCGGCAGATGGCGCTGTATCGCTCCAGGGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: CVGACLPHSCLQ*SADGAVSLQGD Trigger: ATCGCCCTGGAGCGATACAGCGCCATCTGCCGACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CCA 72 bp | GACAGCAGCCACGTGGCTAAGATCACCCGAGCTGCGTaGGAGCGTGTCTGCCACACTCGTGCTTGCAGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: DSSHVAKITRAA*ERVCHTRACSG Trigger: ACCACTGCAAGCACGAGTGTGGCAGACACGCTCCCACGCAGCTCGGGTGATCTTAGCCACGTGGCTGCTGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CAA 72 bp | GAAATCTGGTGCTGCTGCCCCACCCGGCAGACCCCCTaGGTTTCGGACCCGGCTTTGGGTCTCGCTGTCATT | + |
|
Preference number: 6 (lower is better) Translates to: EIWCCCPTRQTP*VSDPALGLAVI Trigger: AATGACAGCGAGACCCAAAGCCGGGTCCGAAACCAAGGGGGTCTGCCGGGTGGGGCAGCAGCACCAGATTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181339.8 |
||
| CDS TCA 72 bp | ATGTGTCCAGGCAGGCCTGGCGGAATCGGCGGTGCATaGAACAGTAGACCAGGGGGTTGGCACAAGCAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: MCPGRPGGIGGA*NSRPGGWHKQR Trigger: CCTCTGCTTGTGCCAACCCCCTGGTCTACTGTTTCATGCACCGCCGATTCCGCCAGGCCTGCCTGGACACAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
||
| CDS CCA 72 bp | AAATCTGGTGCTGCTGCCCCACCCGGCAGACCCCCTTaGTTTCGGACCCGGCTTTGGGTCTCGCTGTCATTA | + |
|
Preference number: 6 (lower is better) Translates to: KSGAAAPPGRPP*FRTRLWVSLSL Trigger: TAATGACAGCGAGACCCAAAGCCGGGTCCGAAACCAAGGGGGTCTGCCGGGTGGGGCAGCAGCACCAGATTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181339.8 |
||
| CDS CAA 72 bp | CCCACCCGGCAGACCCCCTTGGTTTCGGACCCGGCTTaGGGTCTCGCTGTCATTATCACCATCAAAGCGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PTRQTPLVSDPA*GLAVIITIKAE Trigger: CTCCGCTTTGATGGTGATAATGACAGCGAGACCCAAAGCCGGGTCCGAAACCAAGGGGGTCTGCCGGGTGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
||
| CDS CAA 90 bp | AGTGGGCGTGGTCAGCGTTGTCATCTCCAGTCGGGAACGCGGAAGTaGCACGTAGCAGCCATCACTGTCTTCCCCAGTCAGGCTGGTCAC | + |
|
Preference number: 6 (lower is better) Translates to: SGRGQRCHLQSGTRK*HVAAITVFPSQAGH Trigger: GTGACCAGCCTGACTGGGGAAGACAGTGATGGCTGCTACGTGCAACTTCCGCGTTCCCGACTGGAGATGACAACGCTGACCACGCCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033189.6 |
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| CDS GCA 72 bp | TGTTGGACACGTTCACTGGGCCAGAGATGCATGCACTaGAGTATTCGAGGCCCCACTGGCTGCACCACGGTG | + |
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Preference number: 6 (lower is better) Translates to: CWTRSLGQRCMH*SIRGPTGCTTV Trigger: CACCGTGGTGCAGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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| CDS CAA 90 bp | ACGGCCTTGCAGATGACTGTGCCGAAGATGAATGTGCCCATGAGGTaGGGCAGGAGTGTGAAGGGCATGCAAGCGACAGCCAGCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: TALQMTVPKMNVPMR*GRSVKGMQATASRR Trigger: CCTCCTGCTGGCTGTCGCTTGCATGCCCTTCACACTCCTGCCCAACCTCATGGGCACATTCATCTTCGGCACAGTCATCTGCAAGGCCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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| CDS CCA 72 bp | GTGGTCGGCAGATGGCGCTGTATCGCTCCAGGGCGATaGCCGCGAGATTTAGAGTGGACACACTCACTGATA | + |
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Preference number: 6 (lower is better) Translates to: VVGRWRCIAPGR*PRDLEWTHSLI Trigger: TATCAGTGAGTGTGTCCACTCTAAATCTCGCGGCCATCGCCCTGGAGCGATACAGCGCCATCTGCCGACCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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| CDS GCA 72 bp | GACCACATTTGTTGGACACGTTCACTGGGCCAGAGATaGATGCACTGCAGTATTCGAGGCCCCACTGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: DHICWTRSLGQR*MHCSIRGPTGC Trigger: GCAGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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| CDS CAA 72 bp | CAGATGACTGTGCCGAAGATGAATGTGCCCATGAGGTaGGGCAGGAGTGTGAAGGGCATGCAAGCGACAGCC | + |
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Preference number: 6 (lower is better) Translates to: QMTVPKMNVPMR*GRSVKGMQATA Trigger: GGCTGTCGCTTGCATGCCCTTCACACTCCTGCCCAACCTCATGGGCACATTCATCTTCGGCACAGTCATCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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| CDS GCA 72 bp | ACATTTGTTGGACACGTTCACTGGGCCAGAGATGCATaGACTGCAGTATTCGAGGCCCCACTGGCTGCACCA | + |
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Preference number: 6 (lower is better) Translates to: TFVGHVHWARDA*TAVFEAPLAAP Trigger: TGGTGCAGCCAGTGGGGCCTCGAATACTGCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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| CDS GCA 72 bp | ACTTGCATCCTTATTTCTCCCATTGAAATCTGGTGCTaGTGCCCCACCCGGCAGACCCCCTTGGTTTCGGAC | + |
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Preference number: 6 (lower is better) Translates to: TCILISPIEIWC*CPTRQTPLVSD Trigger: GTCCGAAACCAAGGGGGTCTGCCGGGTGGGGCAGCAGCACCAGATTTCAATGGGAGAAATAAGGATGCAAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181339.8 |
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| CDS GCA 72 bp | TTTACTTGCATCCTTATTTCTCCCATTGAAATCTGGTaGTGCTGCCCCACCCGGCAGACCCCCTTGGTTTCG | + |
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Preference number: 6 (lower is better) Translates to: FTCILISPIEIW*CCPTRQTPLVS Trigger: CGAAACCAAGGGGGTCTGCCGGGTGGGGCAGCAGCACCAGATTTCAATGGGAGAAATAAGGATGCAAGTAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181339.8 |
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| CDS CCA 72 bp | AACAGCAGTATTAGCAGAAGCACGGACCACATTTGTTaGACACGTTCACTGGGCCAGAGATGCATGCACTGC | + |
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Preference number: 6 (lower is better) Translates to: NSSISRSTDHIC*TRSLGQRCMHC Trigger: GCAGTGCATGCATCTCTGGCCCAGTGAACGTGTCCAACAAATGTGGTCCGTGCTTCTGCTAATACTGCTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033189.6 ENSMUST00000181339.8 |
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