Pregenerated sensors for CCK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032532Ensembl transcript IDs: ENSMUST00000035120.6, ENSMUST00000213106.2, ENSMUST00000215228.2, ENSMUST00000216138.2, ENSMUST00000216176.2, ENSMUST00000217581.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGTTGTTTCCTCATTCCACCTCCTCCAAGCAGGGCCAAGACGCTaGCCCACTACGATGGGTATTCGTAGTCCTCGGCACTGCGCCGGC | + |
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Preference number: 1 (lower is better) Translates to: VVVSSFHLLQAGPRR*PTTMGIRSPRHCAG Trigger: GCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCAGCGTCTTGGCCCTGCTTGGAGGAGGTGGAATGAGGAAACAACCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR CCA 90 bp | CATTCCACCTCCTCCAAGCAGGGCCAAGACGCTGGCCCACTACGATaGGTATTCGTAGTCCTCGGCACTGCGCCGGCCAAAATCCATCCA | + |
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Preference number: 1 (lower is better) Translates to: HSTSSKQGQDAGPLR*VFVVLGTAPAKIHP Trigger: TGGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCAGCGTCTTGGCCCTGCTTGGAGGAGGTGGAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR GCA 90 bp | CCAAGACGCTGGCCCACTACGATGGGTATTCGTAGTCCTCGGCACTaGGCCGGCCAAAATCCATCCAGCCCATGTAGTCCCGGTCACTTA | + |
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Preference number: 1 (lower is better) Translates to: PRRWPTTMGIRSPRH*AGQNPSSPCSPGHL Trigger: TAAGTGACCGGGACTACATGGGCTGGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCAGCGTCTTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR CCA 90 bp | CTACGATGGGTATTCGTAGTCCTCGGCACTGCGCCGGCCAAAATCCATCCAGCCCGGTCACTTATTCTATaGCTGGGGTCCAGGCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: LRWVFVVLGTAPAKIHPARSLIL*LGSRLC Trigger: GCAGAGCCTGGACCCCAGCCATAGAATAAGTGACCG...GGCTGGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR CCA 90 bp | CTACGATGGGTATTCGTAGTCCTCGGCACTGCGCCGGCCAAAATCCATCCAGCCCACTTATTCTATGGCTaGGGTCCAGGCTCTGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: LRWVFVVLGTAPAKIHPAHLFYG*GPGSAG Trigger: ACCTGCAGAGCCTGGACCCCAGCCATAGAATAAGTG...GGCTGGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR CCA 90 bp | GCTCTACTGGTCCAGGTTAACACCCAACCAGAGGTCACCATCCATGCCACTGCGTCGGAATTCCAGAGCTaGGAGGGGATCTGGTTCGCT | + |
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Preference number: 2 (lower is better) Translates to: ALLVQVNTQPEVTIHATASEFQS*EGIWFA Trigger: AGCGAACCAGATCCCCTCCCAGCTCTGGAATTCCGA...CGCAGTGGCATGGATGGTGACCTCTGGTTGGGTGTTAACCTGGACCAGTAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217581.2 |
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| 3UTR CAA 90 bp | ATACTCAAAACGTCAGACATTAGAGGCGAGGGGTCGTATGTGTGGTaGTTTCCTCATTCCACCTCCTCCAAGCAGGGCCAAGACGCTGGC | + |
|
Preference number: 2 (lower is better) Translates to: ILKTSDIRGEGSYVW*FPHSTSSKQGQDAG Trigger: GCCAGCGTCTTGGCCCTGCTTGGAGGAGGTGGAATGAGGAAACAACCACACATACGACCCCTCGCCTCTAATGTCTGACGTTTTGAGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR GCA 90 bp | GATGTGGCTGCATTGCACACTCTGGACAGATTTCACATTGGGGACTTAATAAATCGTAGTCCTCGGCACTaGGCCGGCCAAAATCCATCC | + |
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Preference number: 2 (lower is better) Translates to: DVAALHTLDRFHIGDLINRSPRH*AGQNPS Trigger: GGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACG...ATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTGCAATGCAGCCACATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR CCA 90 bp | CACACTCTGGACAGATTTCACATTGGGGACTTAATAAATAGATACTCAAAACGTCACTTATTCTATGGCTaGGGTCCAGGCTCTGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: HTLDRFHIGDLINRYSKRHLFYG*GPGSAG Trigger: ACCTGCAGAGCCTGGACCCCAGCCATAGAATAAGTG...ACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR TCA 72 bp | AAGCTGTCTCAGGGGCCAGCCACGAGCCACGACTCCTaGAGGCTACCCTCGGAATTCCAGAGCTGGGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: KLSQGPATSHDS*RLPSEFQSWEG Trigger: CCCCTCCCAGCTCTGGAATTCCGAGGGTAGCCTTCAGGAGTCGTGGCTCGTGGCTGGCCCCTGAGACAGCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217581.2 |
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| 3UTR CCA 72 bp | TCCTCCAAGCAGGGCCAAGACGCTGGCCCACTACGATaGGTATTCGTAGTCCTCGGCACTGCGCCGGCCAAA | + |
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Preference number: 3 (lower is better) Translates to: SSKQGQDAGPLR*VFVVLGTAPAK Trigger: TTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCAGCGTCTTGGCCCTGCTTGGAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR GCA 72 bp | TGGCCCACTACGATGGGTATTCGTAGTCCTCGGCACTaGGCCGGCCAAAATCCATCCAGCCCATGTAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: WPTTMGIRSPRH*AGQNPSSPCSP Trigger: GGGACTACATGGGCTGGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGCAACATTAGGTCTGGGAGTCACTGAAGGAAACACTGCCTTCCGACCACACGGGTCGTATGTGTGGTaGTTTCCTCATTCCACCTCC | + |
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Preference number: 3 (lower is better) Translates to: IATLGLGVTEGNTAFRPHGSYVW*FPHSTS Trigger: GGAGGTGGAATGAGGAAACAACCACACATACGACCC...GTGTGGTCGGAAGGCAGTGTTTCCTTCAGTGACTCCCAGACCTAATGTTGCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035120.6 ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| 3UTR-3UTR CAA 90 bp | GATGTGGCTGCATTGCACACTCTGGACAGATTTCACATTGGGGACTTAATAAATGGGTCGTATGTGTGGTaGTTTCCTCATTCCACCTCC | + |
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Preference number: 3 (lower is better) Translates to: DVAALHTLDRFHIGDLINGSYVW*FPHSTS Trigger: GGAGGTGGAATGAGGAAACAACCACACATACGACCC...ATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTGCAATGCAGCCACATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035120.6 ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| CDS-3UTR GCA 90 bp | GGGCCAAGACGCTGGCCCACTACGATGGGTATTCGTAGTCCTCGGCACTGCGCCGGGGTCCGTAGCTTCTaGAGGGACTACCGGCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: GPRRWPTTMGIRSPRHCAGVRSF*RDYRLR Trigger: GCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCC...GGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCAGCGTCTTGGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS-3UTR GCA 90 bp | ATGAAAGCTGTCTCAGGGGCCAGCCACGAGCCACGACTCCTGAAGGCTACCCTCGGGGTCCGTAGCTTCTaGAGGGACTACCGGCTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: MKAVSGASHEPRLLKATLGVRSF*RDYRLR Trigger: GCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCC...GAGGGTAGCCTTCAGGAGTCGTGGCTCGTGGCTGGCCCCTGAGACAGCTTTCAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217581.2 |
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| CDS-3UTR GCA 90 bp | GACGCTGGCCCACTACGATGGGTATTCGTAGTCCTCGGCACTGCGCCGGCCAAAAGAGGTCACCATCCATaGCACTTTGCGGACCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: DAGPLRWVFVVLGTAPAKRGHHP*HFADLL Trigger: CAGCAGGTCCGCAAAGTGGCATGGATGGTGACCTCT...TTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCCAGCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS-3UTR GCA 90 bp | GGCCCACTACGATGGGTATTCGTAGTCCTCGGCACTGCGCCGGCCAAAATCCATCCATCCATGCCACTTTaGGGACCTGCTGGATGTATC | + |
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Preference number: 4 (lower is better) Translates to: GPLRWVFVVLGTAPAKIHPSMPL*GPAGCI Trigger: GATACATCCAGCAGGTCCGCAAAGTGGCATGGATGG...ATGGATTTTGGCCGGCGCAGTGCCGAGGACTACGAATACCCATCGTAGTGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS-3UTR CCA 90 bp | GCCGGCCAAAATCCATCCAGCCCATGTAGTCCCGGTCACTTATTCTATGGCTGGCAGGTCGACAAGCCATaGGCTGTTCAAATGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: AGQNPSSPCSPGHLFYGWQVDKP*AVQMRA Trigger: TGCCCGCATTTGAACAGCCCATGGCTTGTCGACCTG...CCAGCCATAGAATAAGTGACCGGGACTACATGGGCTGGATGGATTTTGGCCGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| 3UTR CAA 72 bp | ACGTCAGACATTAGAGGCGAGGGGTCGTATGTGTGGTaGTTTCCTCATTCCACCTCCTCCAAGCAGGGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: TSDIRGEGSYVW*FPHSTSSKQGQ Trigger: TTGGCCCTGCTTGGAGGAGGTGGAATGAGGAAACAACCACACATACGACCCCTCGCCTCTAATGTCTGACGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000216176.2 |
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| CDS-3UTR GCA 90 bp | GCTGCATTGCACACTCTGGACAGATTTCACATTGGGGACTTAATAAATAGATACGCCTCTTGCGCCCGCTaGTCCACGGGGTCCGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: AALHTLDRFHIGDLINRYASCAR*STGSVA Trigger: AGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAGGC...GTATCTATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTGCAATGCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000216138.2 |
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| CDS-3UTR GCA 90 bp | CACATTGGGGACTTAATAAATAGATACTCAAAACGTCAGACATTAGAGGCGAGGGGGGTCCGTAGCTTCTaGAGGGACTACCGGCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: HIGDLINRYSKRQTLEARGVRSF*RDYRLR Trigger: GCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCC...CCTCGCCTCTAATGTCTGACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTG 51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 ENSMUST00000216138.2 |
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| CDS-3UTR GCA 90 bp | CAAAATCCATCCAGCCCATGTAGTCCCGGTCACTTATTCTATGGCTGGGGTCCACATGGGCTGTTCAAATaGGGGCAGGAAAAATTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QNPSSPCSPGHLFYGWGPHGLFK*GQEKLG Trigger: ACCCAATTTTTCCTGCCCGCATTTGAACAGCCCATG...TGGACCCCAGCCATAGAATAAGTGACCGGGACTACATGGGCTGGATGGATTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS-3UTR GCA 90 bp | CACATTGGGGACTTAATAAATAGATACTCAAAACGTCAGACATTAGAGGCGAGGCGTAGTCCTCGGCACTaGGCCGGCCAAAATCCATCC | + |
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Preference number: 4 (lower is better) Translates to: HIGDLINRYSKRQTLEARRSPRH*AGQNPS Trigger: GGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACG...CCTCGCCTCTAATGTCTGACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 |
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| CDS-3UTR GCA 90 bp | TTGCACACTCTGGACAGATTTCACATTGGGGACTTAATAAATAGATACTCAAAAGGGGTCCGTAGCTTCTaGAGGGACTACCGGCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: LHTLDRFHIGDLINRYSKGVRSF*RDYRLR Trigger: GCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCC...TTTTGAGTATCTATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000216138.2 |
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| CDS-3UTR GCA 90 bp | GATGTGGCTGCATTGCACACTCTGGACAGATTTCACATTGGGGACTTAATAAATGGCCAGAAGGAGCTTTaGGGACCTGCTGGATGTATC | + |
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Preference number: 4 (lower is better) Translates to: DVAALHTLDRFHIGDLINGQKEL*GPAGCI Trigger: GATACATCCAGCAGGTCCGCAAAGCTCCTTCTGGCC...ATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTGCAATGCAGCCACATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035120.6 |
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| CDS-3UTR GCA 90 bp | CACATTGGGGACTTAATAAATAGATACTCAAAACGTCAGACATTAGAGGCGAGGGGCCAGAAGGAGCTTTaGGGACCTGCTGGATGTATC | + |
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Preference number: 4 (lower is better) Translates to: HIGDLINRYSKRQTLEARGQKEL*GPAGCI Trigger: GATACATCCAGCAGGTCCGCAAAGCTCCTTCTGGCC...CCTCGCCTCTAATGTCTGACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 |
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| CDS-3UTR GCA 90 bp | CACATTGGGGACTTAATAAATAGATACTCAAAACGTCAGACATTAGAGGCGAGGCTGGGGTCCAGGCTCTaGAGGTTCTTAAGAACGGAC | + |
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Preference number: 4 (lower is better) Translates to: HIGDLINRYSKRQTLEARLGSRL*RFLRTD Trigger: GTCCGTTCTTAAGAACCTGCAGAGCCTGGACCCCAG...CCTCGCCTCTAATGTCTGACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 |
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| CDS-3UTR CCA 90 bp | CACATTGGGGACTTAATAAATAGATACTCAAAACGTCAGACATTAGAGGCGAGGCGGTCACTTATTCTATaGCTGGGGTCCAGGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HIGDLINRYSKRQTLEARRSLIL*LGSRLC Trigger: GCAGAGCCTGGACCCCAGCCATAGAATAAGTGACCG...CCTCGCCTCTAATGTCTGACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 |
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| CDS-3UTR GCA 90 bp | TTGCACACTCTGGACAGATTTCACATTGGGGACTTAATAAATAGATACTCAAAACGTAGTCCTCGGCACTaGGCCGGCCAAAATCCATCC | + |
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Preference number: 4 (lower is better) Translates to: LHTLDRFHIGDLINRYSKRSPRH*AGQNPS Trigger: GGATGGATTTTGGCCGGCGCAGTGCCGAGGACTACG...TTTTGAGTATCTATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035120.6 |
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| CDS-3UTR CCA 90 bp | CACATTGGGGACTTAATAAATAGATACTCAAAACGTCAGACATTAGAGGCGAGGCACTTATTCTATGGCTaGGGTCCAGGCTCTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HIGDLINRYSKRQTLEARHLFYG*GPGSAG Trigger: ACCTGCAGAGCCTGGACCCCAGCCATAGAATAAGTG...CCTCGCCTCTAATGTCTGACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 |
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| CDS-3UTR GCA 90 bp | CACACTCTGGACAGATTTCACATTGGGGACTTAATAAATAGATACTCAAAACGTCTGGGGTCCAGGCTCTaGAGGTTCTTAAGAACGGAC | + |
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Preference number: 4 (lower is better) Translates to: HTLDRFHIGDLINRYSKRLGSRL*RFLRTD Trigger: GTCCGTTCTTAAGAACCTGCAGAGCCTGGACCCCAG...ACGTTTTGAGTATCTATTTATTAAGTCCCCAATGTGAAATCTGTCCAGAGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035120.6 |
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| CDS GCA 90 bp | CGGAGCACAGCCCGCAGCTGCCTTCGGGGCGCCTCTTGCGCCCGCTaGTCCACGGGGTCCGTAGCTTCTGCAGGGACTACCGGCTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: RSTARSCLRGASCAR*STGSVASAGTTGCA Trigger: GGCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAGGCGCCCCGAAGGCAGCTGCGGGCTGTGCTCCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS GCA 90 bp | CCGTCCGTCCGGAGCACAGCCCGCAGCTGCCTTCGGGGCGCCTCTTaGGCCCGCTGCTCCACGGGGTCCGTAGCTTCTGCAGGGACTACC | + |
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Preference number: 5 (lower is better) Translates to: PSVRSTARSCLRGAS*ARCSTGSVASAGTT Trigger: GGTAGTCCCTGCAGAAGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAGGCGCCCCGAAGGCAGCTGCGGGCTGTGCTCCGGACGGACGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS GCA 90 bp | GCCCGCTGCTCCACGGGGTCCGTAGCTTCTGCAGGGACTACCGGCTaGGCCAGGGCGCCAGCAGCTAGGACTGCCATCACCACGCACAGA | + |
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Preference number: 5 (lower is better) Translates to: ARCSTGSVASAGTTG*ARAPAARTAITTHR Trigger: TCTGTGCGTGGTGATGGCAGTCCTAGCTGCTGGCGCCCTGGCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCCGTGGAGCAGCGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 |
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| CDS CCA 90 bp | AACACCCAACCAGAGGTCACCATCCATGCCACTTTGCGGACCTGCTaGATGTATCGCGCTAGCAGTGCGCCCAGGCGCGCTCGGGGCTCG | + |
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Preference number: 5 (lower is better) Translates to: NTQPEVTIHATLRTC*MYRASSAPRRARGS Trigger: CGAGCCCCGAGCGCGCCTGGGCGCACTGCTAGCGCGATACATCCAGCAGGTCCGCAAAGTGGCATGGATGGTGACCTCTGGTTGGGTGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS GCA 90 bp | AGGTTCTTAAGAACGGACATGCGGCCAGAAGGAGCTTTGCGGACCTaGTGGATGTATCGCGCTAGCAGTGCGCCCAGGCGCGCTCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: RFLRTDMRPEGALRT*WMYRASSAPRRARG Trigger: GCCCCGAGCGCGCCTGGGCGCACTGCTAGCGCGATACATCCAGCAGGTCCGCAAAGCTCCTTCTGGCCGCATGTCCGTTCTTAAGAACCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 |
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| CDS GCA 90 bp | GTTAACACCCAACCAGAGGTCACCATCCATGCCACTTTGCGGACCTaGTGGATGTATCGCGCTAGCAGTGCGCCCAGGCGCGCTCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: VNTQPEVTIHATLRT*WMYRASSAPRRARG Trigger: GCCCCGAGCGCGCCTGGGCGCACTGCTAGCGCGATACATCCAGCAGGTCCGCAAAGTGGCATGGATGGTGACCTCTGGTTGGGTGTTAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS CCA 90 bp | GCCAGAAGGAGCAGTCAAGCCAAATGCAGACAGGTCGACAAGCCATaGGCTGTTCAAATGCGGGCAGGAAAAATTGGGTTCGTGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: ARRSSQAKCRQVDKP*AVQMRAGKIGFVSS Trigger: GGAGCTCACGAACCCAATTTTTCCTGCCCGCATTTGAACAGCCCATGGCTTGTCGACCTGTCTGCATTTGGCTTGACTGCTCCTTCTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS CCA 90 bp | GGACATGCGGCCAGAAGGAGCTCCTGTGTTTTAATCCAGCTCTACTaGTCCAGGTTAACACCCAACCAGAGGTCACCATCCATGCCACTG | + |
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Preference number: 5 (lower is better) Translates to: GHAARRSSCVLIQLY*SRLTPNQRSPSMPL Trigger: CAGTGGCATGGATGGTGACCTCTGGTTGGGTGTTAACCTGGACCAGTAGAGCTGGATTAAAACACAGGAGCTCCTTCTGGCCGCATGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216176.2 |
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| CDS CCA 90 bp | TCCACAGAAAGGATGCCCACCTCCTGTGTTTTAATCCAGCTCTACTaGTCCAGGTTAACACCCAACCAGAGGTCACCATCCATGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: STERMPTSCVLIQLY*SRLTPNQRSPSMPL Trigger: AAGTGGCATGGATGGTGACCTCTGGTTGGGTGTTAACCTGGACCAGTAGAGCTGGATTAAAACACAGGAGGTGGGCATCCTTTCTGTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS GCA 72 bp | CGGGGCTCGCCGTCCGTCCGGAGCACAGCCCGCAGCTaGCTTCGGGGCGCCTCTTGCGCCCGCTGCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: RGSPSVRSTARS*LRGASCARCST Trigger: CGTGGAGCAGCGGGCGCAAGAGGCGCCCCGAAGGCAGCTGCGGGCTGTGCTCCGGACGGACGGCGAGCCCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS CAA 72 bp | CCGGAGCACAGCCCGCAGCTGCCTTCGGGGCGCCTCTaGCGCCCGCTGCTCCACGGGGTCCGTAGCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: PEHSPQLPSGRL*RPLLHGVRSFC Trigger: GCAGAAGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAGGCGCCCCGAAGGCAGCTGCGGGCTGTGCTCCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS CAA 90 bp | GCCGTCCGTCCGGAGCACAGCCCGCAGCTGCCTTCGGGGCGCCTCTaGCGCCCGCTGCTCCACGGGGTCCGTAGCTTCTGCAGGGACTAC | + |
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Preference number: 6 (lower is better) Translates to: AVRPEHSPQLPSGRL*RPLLHGVRSFCRDY Trigger: GTAGTCCCTGCAGAAGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAGGCGCCCCGAAGGCAGCTGCGGGCTGTGCTCCGGACGGACGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS GCA 72 bp | CTCTTGCGCCCGCTGCTCCACGGGGTCCGTAGCTTCTaGAGGGACTACCGGCTGCGCCAGGGCGCCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: LLRPLLHGVRSF*RDYRLRQGASS Trigger: GCTGCTGGCGCCCTGGCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS GCA 72 bp | TCCACGGGGTCCGTAGCTTCTGCAGGGACTACCGGCTaGGCCAGGGCGCCAGCAGCTAGGACTGCCATCACC | + |
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Preference number: 6 (lower is better) Translates to: STGSVASAGTTG*ARAPAARTAIT Trigger: GGTGATGGCAGTCCTAGCTGCTGGCGCCCTGGCGCAGCCGGTAGTCCCTGCAGAAGCTACGGACCCCGTGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035120.6 ENSMUST00000213106.2 ENSMUST00000215228.2 ENSMUST00000216138.2 ENSMUST00000217581.2 |
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| CDS CCA 72 bp | CCAGAGGTCACCATCCATGCCACTTTGCGGACCTGCTaGATGTATCGCGCTAGCAGTGCGCCCAGGCGCGCT | + |
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Preference number: 6 (lower is better) Translates to: PEVTIHATLRTC*MYRASSAPRRA Trigger: AGCGCGCCTGGGCGCACTGCTAGCGCGATACATCCAGCAGGTCCGCAAAGTGGCATGGATGGTGACCTCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS GCA 72 bp | CAACCAGAGGTCACCATCCATGCCACTTTGCGGACCTaGTGGATGTATCGCGCTAGCAGTGCGCCCAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: QPEVTIHATLRT*WMYRASSAPRR Trigger: GCGCCTGGGCGCACTGCTAGCGCGATACATCCAGCAGGTCCGCAAAGTGGCATGGATGGTGACCTCTGGTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS GCA 72 bp | TCCCGGTCACTTATTCTATGGCTGGGGTCCAGGCTCTaGAGGTTCTTAAGAACGGACATGCGGCCAGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: SRSLILWLGSRL*RFLRTDMRPEG Trigger: TCCTTCTGGCCGCATGTCCGTTCTTAAGAACCTGCAGAGCCTGGACCCCAGCCATAGAATAAGTGACCGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035120.6 ENSMUST00000215228.2 |
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| CDS CCA 72 bp | CAAGCCATGGGCTGTTCAAATGCGGGCAGGAAAAATTaGGTTCGTGAGCTCCACAGAAAGGATGCCCACCTC | + |
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Preference number: 6 (lower is better) Translates to: QAMGCSNAGRKN*VRELHRKDAHL Trigger: GAGGTGGGCATCCTTTCTGTGGAGCTCACGAACCCAATTTTTCCTGCCCGCATTTGAACAGCCCATGGCTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS CCA 72 bp | AGGATGCCCACCTCCTGTGTTTTAATCCAGCTCTACTaGTCCAGGTTAACACCCAACCAGAGGTCACCATCC | + |
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Preference number: 6 (lower is better) Translates to: RMPTSCVLIQLY*SRLTPNQRSPS Trigger: GGATGGTGACCTCTGGTTGGGTGTTAACCTGGACCAGTAGAGCTGGATTAAAACACAGGAGGTGGGCATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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| CDS CCA 72 bp | AGCAGTCAAGCCAAATGCAGACAGGTCGACAAGCCATaGGCTGTTCAAATGCGGGCAGGAAAAATTGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: SSQAKCRQVDKP*AVQMRAGKIGF Trigger: GAACCCAATTTTTCCTGCCCGCATTTGAACAGCCCATGGCTTGTCGACCTGTCTGCATTTGGCTTGACTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216138.2 |
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