Pregenerated sensors for CCIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070999Ensembl transcript IDs: ENSMUST00000095107.3
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCCTTTCCGCTGGTAGCTCAGCAGGCTGCACGGGCGCTCCTGCTTaGGGTCCATCAGGACACTTTCGATCAAGGTCGCGTGGGCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: PLSAGSSAGCTGAPA*GPSGHFRSRSRGQS Trigger: ACTCTGCCCACGCGACCTTGATCGAAAGTGTCCTGATGGACCGCAAGCAGGAGCGCCCGTGCAGCCTGCTGAGCTACCAGCGGAAAGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 90 bp | CCACCGAGTCAAGCAGGGCCCCTTTCCGCTGGTAGCTCAGCAGGCTaGACGGGCGCTCCTGCTTGCGGTCCATCAGGACACTTTCGATCA | + |
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Preference number: 5 (lower is better) Translates to: PPSQAGPLSAGSSAG*TGAPACGPSGHFRS Trigger: TGATCGAAAGTGTCCTGATGGACCGCAAGCAGGAGCGCCCGTGCAGCCTGCTGAGCTACCAGCGGAAAGGGGCCCTGCTTGACTCGGTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 90 bp | CGCCCCGGAGCAGCTCCTCCACGTTCTGCTCTGAGATCACCACTTTaGCGCTGTAGAAGTAATCCAGGAGCTGGTCCACCGTGGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: RPGAAPPRSALRSPL*RCRSNPGAGPPWLG Trigger: GCCCAGCCACGGTGGACCAGCTCCTGGATTACTTCTACAGCGGCAAAGTGGTGATCTCAGAGCAGAACGTGGAGGAGCTGCTCCGGGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 90 bp | TCCCGGAGCAGGCGACCGAAGATGACGGGTGGGCAGCGCATGAAGTaGATAGAGCCCTCGGGACTGGCCCAGAAGTGGAAGTTGTCACGA | + |
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Preference number: 5 (lower is better) Translates to: SRSRRPKMTGGQRMK*IEPSGLAQKWKLSR Trigger: TCGTGACAACTTCCACTTCTGGGCCAGTCCCGAGGGCTCTATGCACTTCATGCGCTGCCCACCCGTCATCTTCGGTCGCCTGCTCCGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | CACGTGGAGGTTTTCATCCCGGAGCAGGCGACCGAAGATGACGGGTaGGCAGCGCATGAAGTGCATAGAGCCCTCGGGACTGGCCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: HVEVFIPEQATEDDG*AAHEVHRALGTGPE Trigger: TTCTGGGCCAGTCCCGAGGGCTCTATGCACTTCATGCGCTGCCCACCCGTCATCTTCGGTCGCCTGCTCCGGGATGAAAACCTCCACGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | ACCCAACTGATGAGTGCGCTGAGCGCCTGGTCCTCGTTGAGCACGTaGAGGTTTTCATCCCGGAGCAGGCGACCGAAGATGACGGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: TQLMSALSAWSSLST*RFSSRSRRPKMTGG Trigger: CCCACCCGTCATCTTCGGTCGCCTGCTCCGGGATGAAAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | TGGTGCCACCGGATATGTAGATGTAACGGCCAGCAGCAGTGGCACTaGGCGCGGCTGCCCGGTATGGCATCTCTGAGAGCTTCAGCCACA | + |
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Preference number: 5 (lower is better) Translates to: WCHRICRCNGQQQWH*ARLPGMASLRASAT Trigger: TGTGGCTGAAGCTCTCAGAGATGCCATACCGGGCAGCCGCGCTCAGTGCCACTGCTGCTGGCCGTTACATCTACATATCCGGTGGCACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | TCCTCCTTCCGGAAGTACACCCAACTGATGAGTGCGCTGAGCGCCTaGTCCTCGTTGAGCACGTGGAGGTTTTCATCCCGGAGCAGGCGA | + |
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Preference number: 5 (lower is better) Translates to: SSFRKYTQLMSALSA*SSLSTWRFSSRSRR Trigger: TCGCCTGCTCCGGGATGAAAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGTGTACTTCCGGAAGGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | CAATGCTCCCACCCACTGAGTAAACTGTTCCCCCGCAGGTCACCATaGTGTGGAAGACAAGCCCAATGGGCAGGTCAGGTAGCTTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: QCSHPLSKLFPRRSP*CGRQAQWAGQVAWS Trigger: GGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGACCTGCGGGGGAACAGTTTACTCAGTGGGTGGGAGCATTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | ATTTCCACGCTCTGCCGGTGGCTGTGTACACGAAGGATGTTGTCCTaGTGGAACGAGAGCAGGGGCCGGTGGTTGAATTCGATGGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ISTLCRWLCTRRMLS*WNESRGRWLNSMGK Trigger: CTTCCCCATCGAATTCAACCACCGGCCCCTGCTCTCGTTCCATCAGGACAACATCCTTCGTGTACACAGCCACCGGCAGAGCGTGGAAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 90 bp | TCGCCCAGTGACAATGTACAGGTTCCGGTCACCCTTAGTGATGACTaGTGTCCCGTCCATAGGGATGCTCATCTTCCCCGCCAAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: SPSDNVQVPVTLSDD*CPVHRDAHLPRQAP Trigger: TGGTGCTTGGCGGGGAAGATGAGCATCCCTATGGACGGGACAGCAGTCATCACTAAGGGTGACCGGAACCTGTACATTGTCACTGGGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | CGCTCCTGCTTGCGGTCCATCAGGACACTTTCGATCAAGGTCGCGTaGGCAGAGTTGTTCTCCAAGCCAACCAGCTTGTTGCTGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: RSCLRSIRTLSIKVA*AELFSKPTSLLLAN Trigger: GTTTGCCAGCAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACGCGACCTTGATCGAAAGTGTCCTGATGGACCGCAAGCAGGAGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | AGTGGAGAGACGGCAGCCAGCACGTTGCGATGTGCGAAGAAGACATaGTGGTCCACAGTCAGGGCCATGTCCCAGTACTCTTTACGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SGETAASTLRCAKKT*WSTVRAMSQYSLRF Trigger: GAAGCGTAAAGAGTACTGGGACATGGCCCTGACTGTGGACCATCATGTCTTCTTCGCACATCGCAACGTGCTGGCTGCCGTCTCTCCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 90 bp | GTATTTTTCCCGCTCCTCCTTCCGGAAGTACACCCAACTGATGAGTaGGCTGAGCGCCTGGTCCTCGTTGAGCACGTGGAGGTTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: VFFPLLLPEVHPTDE*AERLVLVEHVEVFI Trigger: GATGAAAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGTGTACTTCCGGAAGGAGGAGCGGGAAAAATAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | CCATGTCATACCGCCACGCTGTCTTCAGTCCTGAAATCTGCTCAGTaGTGCCACCGGATATGTAGATGTAACGGCCAGCAGCAGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: PCHTATLSSVLKSAQ*CHRICRCNGQQQWH Trigger: GTGCCACTGCTGCTGGCCGTTACATCTACATATCCGGTGGCACCACTGAGCAGATTTCAGGACTGAAGACAGCGTGGCGGTATGACATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | TCACCATGGTGTGGAAGACAAGCCCAATGGGCAGGTCAGGTAGCTTaGTCCAGGAGTTGTCGTCCATGTCATACCGCCACGCTGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SPWCGRQAQWAGQVA*SRSCRPCHTATLSS Trigger: TGAAGACAGCGTGGCGGTATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | AAACTGTTCCCCCGCAGGTCACCATGGTGTGGAAGACAAGCCCAATaGGCAGGTCAGGTAGCTTGGTCCAGGAGTTGTCGTCCATGTCAT | + |
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Preference number: 5 (lower is better) Translates to: KLFPRRSPWCGRQAQ*AGQVAWSRSCRPCH Trigger: ATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGACCTGCGGGGGAACAGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | ATTGAAATACTGTGCGCCCCGGAGCAGCTCCTCCACGTTCTGCTCTaGGATCACCACTTTGCCGCTGTAGAAGTAATCCAGGAGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: IEILCAPEQLLHVLL*DHHFAAVEVIQELV Trigger: GACCAGCTCCTGGATTACTTCTACAGCGGCAAAGTGGTGATCTCAGAGCAGAACGTGGAGGAGCTGCTCCGGGGCGCACAGTATTTCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | CCAGGAGTTGTCGTCCATGTCATACCGCCACGCTGTCTTCAGTCCTaGAATCTGCTCAGTGGTGCCACCGGATATGTAGATGTAACGGCC | + |
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Preference number: 5 (lower is better) Translates to: PGVVVHVIPPRCLQS*NLLSGATGYVDVTA Trigger: GGCCGTTACATCTACATATCCGGTGGCACCACTGAGCAGATTTCAGGACTGAAGACAGCGTGGCGGTATGACATGGACGACAACTCCTGG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | ATAAATGTTAGAGACGTACCGGCGTGGGGCAATGCTCCCACCCACTaGGTAAACTGTTCCCCCGCAGGTCACCATGGTGTGGAAGACAAG | + |
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Preference number: 5 (lower is better) Translates to: INVRDVPAWGNAPTH*VNCSPAGHHGVEDK Trigger: CTTGTCTTCCACACCATGGTGACCTGCGGGGGAACAGTTTACTCAGTGGGTGGGAGCATTGCCCCACGCCGGTACGTCTCTAACATTTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | GGCCCAGAAGTGGAAGTTGTCACGAATGCCAGAGTAGGCCAAGTCTaGTACTTCTTTGAGCTCGAACAGCTCAGCCAAGAAGAGGTAGCG | + |
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Preference number: 5 (lower is better) Translates to: GPEVEVVTNARVGQV*YFFELEQLSQEEVA Trigger: CGCTACCTCTTCTTGGCTGAGCTGTTCGAGCTCAAAGAAGTATCAGACTTGGCCTACTCTGGCATTCGTGACAACTTCCACTTCTGGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 90 bp | AAGCAGTTGACGCGGCGAATAGACTTAATAAGGAAGTCATTGCAGTaGATCCGAAGGCGTGGGGTATTGAAATACTGTGCGCCCCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: KQLTRRIDLIRKSLQ*IRRRGVLKYCAPRS Trigger: GCTCCGGGGCGCACAGTATTTCAATACCCCACGCCTTCGGATTCACTGCAATGACTTCCTTATTAAGTCTATTCGCCGCGTCAACTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | GCGAATAGACTTAATAAGGAAGTCATTGCAGTGAATCCGAAGGCGTaGGGTATTGAAATACTGTGCGCCCCGGAGCAGCTCCTCCACGTT | + |
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Preference number: 5 (lower is better) Translates to: ANRLNKEVIAVNPKA*GIEILCAPEQLLHV Trigger: AACGTGGAGGAGCTGCTCCGGGGCGCACAGTATTTCAATACCCCACGCCTTCGGATTCACTGCAATGACTTCCTTATTAAGTCTATTCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 90 bp | CCCCCACATACAAATACCTTGCTGTCTCCAATGGAGCAGATAGCATaGGATACATCCAAGGGACAACTGTTGGGCAACAGAGGTACTGAG | + |
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Preference number: 5 (lower is better) Translates to: PPHTNTLLSPMEQIA*DTSKGQLLGNRGTE Trigger: CTCAGTACCTCTGTTGCCCAACAGTTGTCCCTTGGATGTATCCCATGCTATCTGCTCCATTGGAGACAGCAAGGTATTTGTATGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 72 bp | AGGCGACCGAAGATGACGGGTGGGCAGCGCATGAAGTaGATAGAGCCCTCGGGACTGGCCCAGAAGTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RRPKMTGGQRMK*IEPSGLAQKWK Trigger: CTTCCACTTCTGGGCCAGTCCCGAGGGCTCTATGCACTTCATGCGCTGCCCACCCGTCATCTTCGGTCGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 72 bp | CCGCTCCTCCTTCCGGAAGTACACCCAACTGATGAGTaGGCTGAGCGCCTGGTCCTCGTTGAGCACGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: PLLLPEVHPTDE*AERLVLVEHVE Trigger: CTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGTGTACTTCCGGAAGGAGGAGCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 72 bp | GCTGGTAGCTCAGCAGGCTGCACGGGCGCTCCTGCTTaGGGTCCATCAGGACACTTTCGATCAAGGTCGCGT | + |
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Preference number: 6 (lower is better) Translates to: AGSSAGCTGAPA*GPSGHFRSRSR Trigger: ACGCGACCTTGATCGAAAGTGTCCTGATGGACCGCAAGCAGGAGCGCCCGTGCAGCCTGCTGAGCTACCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | AGAGACGTACCGGCGTGGGGCAATGCTCCCACCCACTaGGTAAACTGTTCCCCCGCAGGTCACCATGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: RDVPAWGNAPTH*VNCSPAGHHGV Trigger: CACACCATGGTGACCTGCGGGGGAACAGTTTACTCAGTGGGTGGGAGCATTGCCCCACGCCGGTACGTCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | GTTTTCATCCCGGAGCAGGCGACCGAAGATGACGGGTaGGCAGCGCATGAAGTGCATAGAGCCCTCGGGACT | + |
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Preference number: 6 (lower is better) Translates to: VFIPEQATEDDG*AAHEVHRALGT Trigger: AGTCCCGAGGGCTCTATGCACTTCATGCGCTGCCCACCCGTCATCTTCGGTCGCCTGCTCCGGGATGAAAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | ATGAGTGCGCTGAGCGCCTGGTCCTCGTTGAGCACGTaGAGGTTTTCATCCCGGAGCAGGCGACCGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: MSALSAWSSLST*RFSSRSRRPKM Trigger: CATCTTCGGTCGCCTGCTCCGGGATGAAAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | GCAAACACCCCATCGTTGAACTTACCGTGGGCCTTCTaGCCACCCAGGATGACCACCGAGTCAAGCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: ANTPSLNLPWAF*PPRMTTESSRA Trigger: GGCCCTGCTTGACTCGGTGGTCATCCTGGGTGGCCAGAAGGCCCACGGTAAGTTCAACGATGGGGTGTTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | ACCCAACTGATGAGTGCGCTGAGCGCCTGGTCCTCGTaGAGCACGTGGAGGTTTTCATCCCGGAGCAGGCGA | + |
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Preference number: 6 (lower is better) Translates to: TQLMSALSAWSS*STWRFSSRSRR Trigger: TCGCCTGCTCCGGGATGAAAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | CGGAAGTACACCCAACTGATGAGTGCGCTGAGCGCCTGGTCCTCGTaGAGCACGTGGAGGTTTTCATCCCGGAGCAGGCGACCGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: RKYTQLMSALSAWSS*STWRFSSRSRRPKM Trigger: CATCTTCGGTCGCCTGCTCCGGGATGAAAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGTGTACTTCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | CGGATATGTAGATGTAACGGCCAGCAGCAGTGGCACTaGGCGCGGCTGCCCGGTATGGCATCTCTGAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: RICRCNGQQQWH*ARLPGMASLRA Trigger: AGCTCTCAGAGATGCCATACCGGGCAGCCGCGCTCAGTGCCACTGCTGCTGGCCGTTACATCTACATATCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | CCCCGCAGGTCACCATGGTGTGGAAGACAAGCCCAATaGGCAGGTCAGGTAGCTTGGTCCAGGAGTTGTCGT | + |
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Preference number: 6 (lower is better) Translates to: PRRSPWCGRQAQ*AGQVAWSRSCR Trigger: ACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGACCTGCGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | CTCTGCCGGTGGCTGTGTACACGAAGGATGTTGTCCTaGTGGAACGAGAGCAGGGGCCGGTGGTTGAATTCG | + |
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Preference number: 6 (lower is better) Translates to: LCRWLCTRRMLS*WNESRGRWLNS Trigger: CGAATTCAACCACCGGCCCCTGCTCTCGTTCCATCAGGACAACATCCTTCGTGTACACAGCCACCGGCAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | GGCCGGTGGTTGAATTCGATGGGGAAGGTGATACACTaGACCACTTCCCCCGTGCAGGTGTCAAAGCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: GRWLNSMGKVIH*TTSPVQVSKQS Trigger: GGACTGCTTTGACACCTGCACGGGGGAAGTGGTCCAGTGTATCACCTTCCCCATCGAATTCAACCACCGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | GTCACCATGGTGTGGAAGACAAGCCCAATGGGCAGGTCAGGTAGCTaGGTCCAGGAGTTGTCGTCCATGTCATACCGCCACGCTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VTMVWKTSPMGRSGS*VQELSSMSYRHAVF Trigger: GAAGACAGCGTGGCGGTATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | ACGGCAGCCAGCACGTTGCGATGTGCGAAGAAGACATaGTGGTCCACAGTCAGGGCCATGTCCCAGTACTCT | + |
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Preference number: 6 (lower is better) Translates to: TAASTLRCAKKT*WSTVRAMSQYS Trigger: AGAGTACTGGGACATGGCCCTGACTGTGGACCATCATGTCTTCTTCGCACATCGCAACGTGCTGGCTGCCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | GGAAGTCATTGCAGTGAATCCGAAGGCGTGGGGTATTaGAATACTGTGCGCCCCGGAGCAGCTCCTCCACGT | + |
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Preference number: 6 (lower is better) Translates to: GSHCSESEGVGY*NTVRPGAAPPR Trigger: ACGTGGAGGAGCTGCTCCGGGGCGCACAGTATTTCAATACCCCACGCCTTCGGATTCACTGCAATGACTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | TGTGGAAGACAAGCCCAATGGGCAGGTCAGGTAGCTTaGTCCAGGAGTTGTCGTCCATGTCATACCGCCACG | + |
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Preference number: 6 (lower is better) Translates to: CGRQAQWAGQVA*SRSCRPCHTAT Trigger: CGTGGCGGTATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | CACCCACTGAGTAAACTGTTCCCCCGCAGGTCACCATaGTGTGGAAGACAAGCCCAATGGGCAGGTCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: HPLSKLFPRRSP*CGRQAQWAGQV Trigger: TACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGACCTGCGGGGGAACAGTTTACTCAGTGGGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | AGCCCAATGGGCAGGTCAGGTAGCTTGGTCCAGGAGTaGTCGTCCATGTCATACCGCCACGCTGTCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SPMGRSGSLVQE*SSMSYRHAVFS Trigger: ACTGAAGACAGCGTGGCGGTATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | GTGTGGAAGACAAGCCCAATGGGCAGGTCAGGTAGCTaGGTCCAGGAGTTGTCGTCCATGTCATACCGCCAC | + |
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Preference number: 6 (lower is better) Translates to: VWKTSPMGRSGS*VQELSSMSYRH Trigger: GTGGCGGTATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 72 bp | GCCACGCTGTCTTCAGTCCTGAAATCTGCTCAGTGGTaGCACCGGATATGTAGATGTAACGGCCAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: ATLSSVLKSAQW*HRICRCNGQQQ Trigger: CTGCTGCTGGCCGTTACATCTACATATCCGGTGGCACCACTGAGCAGATTTCAGGACTGAAGACAGCGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | ACCGCCACGCTGTCTTCAGTCCTGAAATCTGCTCAGTaGTGCCACCGGATATGTAGATGTAACGGCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: TATLSSVLKSAQ*CHRICRCNGQQ Trigger: CTGCTGGCCGTTACATCTACATATCCGGTGGCACCACTGAGCAGATTTCAGGACTGAAGACAGCGTGGCGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | GTCGCGTGGGCAGAGTTGTTCTCCAAGCCAACCAGCTaGTTGCTGGCAAACATCAGCGTCTTGTTGGAGACC | + |
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Preference number: 6 (lower is better) Translates to: VAWAELFSKPTS*LLANISVLLET Trigger: GGTCTCCAACAAGACGCTGATGTTTGCCAGCAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACGCGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | TTGCGGTCCATCAGGACACTTTCGATCAAGGTCGCGTGGGCAGAGTaGTTCTCCAAGCCAACCAGCTTGTTGCTGGCAAACATCAGCGTC | + |
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Preference number: 6 (lower is better) Translates to: LRSIRTLSIKVAWAE*FSKPTSLLLANISV Trigger: GACGCTGATGTTTGCCAGCAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACGCGACCTTGATCGAAAGTGTCCTGATGGACCGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | TGGAAGACAAGCCCAATGGGCAGGTCAGGTAGCTTGGTCCAGGAGTaGTCGTCCATGTCATACCGCCACGCTGTCTTCAGTCCTGAAATC | + |
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Preference number: 6 (lower is better) Translates to: WKTSPMGRSGSLVQE*SSMSYRHAVFSPEI Trigger: GATTTCAGGACTGAAGACAGCGTGGCGGTATGACATGGACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 72 bp | GGCTTTTCACTAGTGGAGAGACGGCAGCCAGCACGTTaGGATGTGCGAAGAAGACATGATGGTCCACAGTCA | + |
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Preference number: 6 (lower is better) Translates to: GFSLVERRQPAR*DVRRRHDGPQS Trigger: TGACTGTGGACCATCATGTCTTCTTCGCACATCGCAACGTGCTGGCTGCCGTCTCTCCACTAGTGAAAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS GCA 72 bp | CGTGGGCAGAGTTGTTCTCCAAGCCAACCAGCTTGTTaGTGGCAAACATCAGCGTCTTGTTGGAGACCGCAT | + |
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Preference number: 6 (lower is better) Translates to: RGQSCSPSQPAC*WQTSASCWRPH Trigger: ATGCGGTCTCCAACAAGACGCTGATGTTTGCCAGCAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | TTGCGGTCCATCAGGACACTTTCGATCAAGGTCGCGTaGGCAGAGTTGTTCTCCAAGCCAACCAGCTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LRSIRTLSIKVA*AELFSKPTSLL Trigger: CAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACGCGACCTTGATCGAAAGTGTCCTGATGGACCGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | TCGATCAAGGTCGCGTGGGCAGAGTTGTTCTCCAAGCCAACCAGCTaGTTGCTGGCAAACATCAGCGTCTTGTTGGAGACCGCATTGAGA | + |
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Preference number: 6 (lower is better) Translates to: SIKVAWAELFSKPTS*LLANISVLLETALR Trigger: TCTCAATGCGGTCTCCAACAAGACGCTGATGTTTGCCAGCAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACGCGACCTTGATCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | AGAGTTCATCGGTGGTCTTCATGTCGTTGCTGGAGATaGGGCTTTTCACTAGTGGAGAGACGGCAGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: RVHRWSSCRCWR*GFSLVERRQPA Trigger: TGCTGGCTGCCGTCTCTCCACTAGTGAAAAGCCTCATCTCCAGCAACGACATGAAGACCACCGATGAACTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | GTCGTCCATGTCATACCGCCACGCTGTCTTCAGTCCTaGAATCTGCTCAGTGGTGCCACCGGATATGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: VVHVIPPRCLQS*NLLSGATGYVD Trigger: ATCTACATATCCGGTGGCACCACTGAGCAGATTTCAGGACTGAAGACAGCGTGGCGGTATGACATGGACGAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | GTCTGGACATCGCTGGCTGTGGTGACACCCCCACATACAAATACCTaGCTGTCTCCAATGGAGCAGATAGCATGGGATACATCCAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: VWTSLAVVTPPHTNT*LSPMEQIAWDTSKG Trigger: TCCCTTGGATGTATCCCATGCTATCTGCTCCATTGGAGACAGCAAGGTATTTGTATGTGGGGGTGTCACCACAGCCAGCGATGTCCAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | AAGGGACAACTGTTGGGCAACAGAGGTACTGAGGTTGTCGACTTGTaGGCCTTGATCTTCTGTAAGTTGATTTCCACGCTCTGCCGGTGG | + |
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Preference number: 6 (lower is better) Translates to: KGQLLGNRGTEVVDL*ALIFCKLISTLCRW Trigger: CCACCGGCAGAGCGTGGAAATCAACTTACAGAAGATCAAGGCCAACAAGTCGACAACCTCAGTACCTCTGTTGCCCAACAGTTGTCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | CAGTGCCTCAGGTGGGCAGGCAAGGGTCTGCCATTCACCTATCTTTaGGTCCAGCAAGTAAGCATTAGGATTGATGGTGTAGTCCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: QCLRWAGKGLPFTYL*VQQVSIRIDGVVLG Trigger: ACCAAGGACTACACCATCAATCCTAATGCTTACTTGCTGGACCAAAAGATAGGTGAATGGCAGACCCTTGCCTGCCCACCTGAGGCACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | CACGAATGCCAGAGTAGGCCAAGTCTGATACTTCTTTaGGCTCGAACAGCTCAGCCAAGAAGAGGTAGCGCA | + |
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Preference number: 6 (lower is better) Translates to: HECQSRPSLILL*ARTAQPRRGSA Trigger: TGCGCTACCTCTTCTTGGCTGAGCTGTTCGAGCTCAAAGAAGTATCAGACTTGGCCTACTCTGGCATTCGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | CTTAATAAGGAAGTCATTGCAGTGAATCCGAAGGCGTaGGGTATTGAAATACTGTGCGCCCCGGAGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LNKEVIAVNPKA*GIEILCAPEQL Trigger: GAGCTGCTCCGGGGCGCACAGTATTTCAATACCCCACGCCTTCGGATTCACTGCAATGACTTCCTTATTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | GAGGTTGTCGACTTGTTGGCCTTGATCTTCTGTAAGTaGATTTCCACGCTCTGCCGGTGGCTGTGTACACGA | + |
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Preference number: 6 (lower is better) Translates to: EVVDLLALIFCK*ISTLCRWLCTR Trigger: TCGTGTACACAGCCACCGGCAGAGCGTGGAAATCAACTTACAGAAGATCAAGGCCAACAAGTCGACAACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | TCGCTGGCTGTGGTGACACCCCCACATACAAATACCTaGCTGTCTCCAATGGAGCAGATAGCATGGGATACA | + |
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Preference number: 6 (lower is better) Translates to: SLAVVTPPHTNT*LSPMEQIAWDT Trigger: TGTATCCCATGCTATCTGCTCCATTGGAGACAGCAAGGTATTTGTATGTGGGGGTGTCACCACAGCCAGCGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | AGAGGTACTGAGGTTGTCGACTTGTTGGCCTTGATCTTCTGTAAGTaGATTTCCACGCTCTGCCGGTGGCTGTGTACACGAAGGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: RGTEVVDLLALIFCK*ISTLCRWLCTRRML Trigger: CAACATCCTTCGTGTACACAGCCACCGGCAGAGCGTGGAAATCAACTTACAGAAGATCAAGGCCAACAAGTCGACAACCTCAGTACCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 90 bp | TCTCCAATGGAGCAGATAGCATGGGATACATCCAAGGGACAACTGTaGGGCAACAGAGGTACTGAGGTTGTCGACTTGTTGGCCTTGATC | + |
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Preference number: 6 (lower is better) Translates to: SPMEQIAWDTSKGQL*GNRGTEVVDLLALI Trigger: GATCAAGGCCAACAAGTCGACAACCTCAGTACCTCTGTTGCCCAACAGTTGTCCCTTGGATGTATCCCATGCTATCTGCTCCATTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | GAGCAGATAGCATGGGATACATCCAAGGGACAACTGTaGGGCAACAGAGGTACTGAGGTTGTCGACTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: EQIAWDTSKGQL*GNRGTEVVDLL Trigger: CAACAAGTCGACAACCTCAGTACCTCTGTTGCCCAACAGTTGTCCCTTGGATGTATCCCATGCTATCTGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | CTGTTGGGCAACAGAGGTACTGAGGTTGTCGACTTGTaGGCCTTGATCTTCTGTAAGTTGATTTCCACGCTC | + |
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Preference number: 6 (lower is better) Translates to: LLGNRGTEVVDL*ALIFCKLISTL Trigger: GAGCGTGGAAATCAACTTACAGAAGATCAAGGCCAACAAGTCGACAACCTCAGTACCTCTGTTGCCCAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CAA 72 bp | AGGTGGGCAGGCAAGGGTCTGCCATTCACCTATCTTTaGGTCCAGCAAGTAAGCATTAGGATTGATGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: RWAGKGLPFTYL*VQQVSIRIDGV Trigger: TACACCATCAATCCTAATGCTTACTTGCTGGACCAAAAGATAGGTGAATGGCAGACCCTTGCCTGCCCACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS TCA 72 bp | ACGCGGCGAATAGACTTAATAAGGAAGTCATTGCAGTaGATCCGAAGGCGTGGGGTATTGAAATACTGTGCG | + |
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Preference number: 6 (lower is better) Translates to: TRRIDLIRKSLQ*IRRRGVLKYCA Trigger: CGCACAGTATTTCAATACCCCACGCCTTCGGATTCACTGCAATGACTTCCTTATTAAGTCTATTCGCCGCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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| CDS CCA 72 bp | ACAAATACCTTGCTGTCTCCAATGGAGCAGATAGCATaGGATACATCCAAGGGACAACTGTTGGGCAACAGA | + |
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Preference number: 6 (lower is better) Translates to: TNTLLSPMEQIA*DTSKGQLLGNR Trigger: TCTGTTGCCCAACAGTTGTCCCTTGGATGTATCCCATGCTATCTGCTCCATTGGAGACAGCAAGGTATTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095107.3 |
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