RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCHCR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040312

Ensembl transcript IDs: ENSMUST00000045956.14, ENSMUST00000164242.9, ENSMUST00000173903.2

Found 320 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGGGTCCAGCTTCAGGCTaGCTTCATTCTTCCCCCTGG +
Preference number: 2 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGGPASG*LHSSPW
Trigger: CCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACC...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
53% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGGCCCGGCCCACCTCCTaGTGGATCAGGTGGGCACTC +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGARPTS*WIRWAL
Trigger: GAGTGCCCACCTGATCCAGCAGGAGGTGGGCCGGGC...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
71% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGCCCTCGGCCTCAGCTTaGCCGGCCTTCTCTGCCACT +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGPSASA*PAFSAT
Trigger: AGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGG...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATCTCCGGCCAAGGCGGTaGGCAGGCCCTCGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHLRPRR*AGPRPQ
Trigger: CTGAGGCCGAGGGCCTGCGCACCGCCTTGGCCGGAG...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCTTGCAGGGCACGCTaGAAGATGGCCTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGSCRAR*KMACSW
Trigger: CCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGA...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTCCAGCTCCAGAGACCTaGCTCTCCGCCCTAGCCCCT +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAPAPET*LSALAP
Trigger: AGGGGCTAGGGCGGAGAGGCAGGTCTCTGGAGCTGG...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATCTCCCCTTGCTCCCGTaGCCGGCCCACCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHLPLLP*PAHLLL
Trigger: CAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAG...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTCTGGCCCCGACGTGCTaGCTCCAACTGCTGCCCAAC +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLALAPTC*LQLLPN
Trigger: GTTGGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAG...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCCTGCTGGCCCCGACGTaGTGCCTCCAACTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSLLAPT*CLQLLP
Trigger: GGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAGCAG...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCCTGCTGGCCCCGACGTaGTGCCTCCAACTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPLLAPT*CLQLLP
Trigger: GGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAGCAG...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTCGGCCCACCTCCTGCTaGATCAGGTGGGCACTCAGC +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLARPTSC*IRWALS
Trigger: GCTGAGTGCCCACCTGATCCAGCAGGAGGTGGGCCG...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCTCCGTGCTCTCCTGCTaGCCCCGACGTGCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGSVLSC*PRRAAS
Trigger: GGAGGCAGCACGTCGGGGCCAGCAGGAGAGCACGGA...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAACCTCATCTTCTaGTGCAGCGAGGTCTCCCGT +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGSNLIF*CSEVSR
Trigger: ACGGGAGACCTCGCTGCAGCAGAAGATGAGGTTGGA...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGCTTTGGGAGGTCACTTaGTCCTGGAGCTCTGCTACC +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGLWEVT*SWSSAT
Trigger: GGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAG...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTCAGGTCTGTGTCCAGTaGGGGTGCGGCTTCCGATGG +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAQVCVQ*GCGFRW
Trigger: CCATCGGAAGCCGCACCCCCACTGGACACAGACCTG...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCCTGGCCAGGGATTCCTaGGCACGCTGCAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPLARDS*ARCSSC
Trigger: GCAGGAGCTGCAGCGTGCCCAGGAATCCCTGGCCAG...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCCGTGCTCTCCTGCTaGCCCCGACGTGCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHSVLSC*PRRAAS
Trigger: GGAGGCAGCACGTCGGGGCCAGCAGGAGAGCACGGA...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCCTCTTGGAGCTGCCGTaGGATCAGCTCGGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPLLELP*DQLGLL
Trigger: CAGCAGGCCGAGCTGATCTCACGGCAGCTCCAAGAG...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCAACTCCACGGTGGCCTaGAGGTCAGCCCGATCCTCC +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSNSTVA*RSARSS
Trigger: GGAGGATCGGGCTGACCTTCAGGCCACCGTGGAGTT...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTAACTCCACGGTGGCCTaGAGGTCAGCCCGATCCTCC +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLNSTVA*RSARSS
Trigger: GGAGGATCGGGCTGACCTTCAGGCCACCGTGGAGTT...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTTGCGCTCCTTTTCCTaGGTGGCTTTGTGCTGGATC +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGLRSFS*VALCWI
Trigger: GATCCAGCACAAAGCCACTCAGGAAAAGGAGCGCAA...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATCCAGCTCCAGAGACCTaGCTCTCCGCCCTAGCCCCT +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHPAPET*LSALAP
Trigger: AGGGGCTAGGGCGGAGAGGCAGGTCTCTGGAGCTGG...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCCCAAGCCCTCGGCCTTaGTGGCCAGACTGTCGAGAG +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSPSPRP*WPDCRE
Trigger: CTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGG...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTAGGTGGGCACTCAGCTaGAGCTCTGCATCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLRWALS*SSASRR
Trigger: CCGCCTGGATGCAGAGCTGCAGCTGAGTGCCCACCT...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATCTGGCCCCGACGTGCTaGCTCCAACTGCTGCCCAAC +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHLAPTC*LQLLPN
Trigger: GTTGGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAG...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCACCACAGCCTTGGCCTaGTCCCTTCGGGCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPTTALA*SLRASF
Trigger: GAACGAGGCCCGAAGGGAGCAGGCCAAGGCTGTGGT...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCACCACAGCCTTGGCCTaGTCCCTTCGGGCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGTTALA*SLRASF
Trigger: GAACGAGGCCCGAAGGGAGCAGGCCAAGGCTGTGGT...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCGGTCGGGGCCATTCTTaGCAGAGTTGGAAGGGGCCG +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSGRGHS*QSWKGP
Trigger: CGGCCCCTTCCAACTCTGCCAAGAATGGCCCCGACC...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCAGCCCTCGGCCTTGCTaGCCAGACTGTCGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPSPRPC*PDCREP
Trigger: AGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCT...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATCGGCCCACCTCCTGCTaGATCAGGTGGGCACTCAGC +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHRPTSC*IRWALS
Trigger: GCTGAGTGCCCACCTGATCCAGCAGGAGGTGGGCCG...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTCTGGCCAGGGATTCCTaGGCACGCTGCAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPLARDS*ARCSSC
Trigger: GCAGGAGCTGCAGCGTGCCCAGGAATCCCTGGCCAG...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCACTGGCCAGGGATTCCTaGGCACGCTGCAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLALARDS*ARCSSC
Trigger: GCAGGAGCTGCAGCGTGCCCAGGAATCCCTGGCCAG...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTCCGTGCTCTCCTGCTaGCCCCGACGTGCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSSVLSC*PRRAAS
Trigger: GGAGGCAGCACGTCGGGGCCAGCAGGAGAGCACGGA...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTAACTCCACGGTGGCCTaGAGGTCAGCCCGATCCTCC +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPNSTVA*RSARSS
Trigger: GGAGGATCGGGCTGACCTTCAGGCCACCGTGGAGTT...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGAAGGGATCTAAAGGCTaGATCTTCCTGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGKGSKG*IFLVSS
Trigger: GGAGCTGACCAGGAAGATTCAGCCTTTAGATCCCTT...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCGGCCTTCTCTGCCACTaGCAGAGCATCCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPGLLCH*QSIQLH
Trigger: GTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCC...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCGTGGAGTCCCTGTGCTaGAGGTCCTGGGCTTTGAGC +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPVESLC*RSWALS
Trigger: GCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCAC...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCTCTTGCAGGGCACGCTaGAAGATGGCCTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSSCRAR*KMACSW
Trigger: CCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGA...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATGGCCGAGCTTGGAAGTaGGAGGGAGGAACCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHGRAWK*EGGTSP
Trigger: TGGGCTGGTTCCTCCCTCCCACTTCCAAGCTCGGCC...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATGGAAGGGGCCGAGCTTaGAAGTGGGAGGGAGGAACC +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHGRGRA*KWEGGT
Trigger: GGTTCCTCCCTCCCACTTCCAAGCTCGGCCCCTTCC...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTATGTCCGCCTCCTTCTaGGCCATAGCCAGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAMSASF*AIASCL
Trigger: CAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACAT...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTGGGTCTTGCTCAGCTaGTTCCTGAGCATGTCCGCC +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAWVLLS*FLSMSA
Trigger: GGCGGACATGCTCAGGAACCAGCTGAGCAAGACCCA...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTGCCTGCTCCTGGCTTTaGGAGGTCACTTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLACSWL*EVTCSW
Trigger: CCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGC...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGGGCACGCTGCAAGATaGCCTGCTCCTGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLAGHAAR*PAPGFG
Trigger: CCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCC...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATGTTCCTGCCTCCGCCTaGCCTCCTGAGCCTGATCCA +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHVPASA*PPEPDP
Trigger: TGGATCAGGCTCAGGAGGCCAGGCGGAGGCAGGAAC...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCTTGGTGCAGGCTCTaGATCTCCTCCAGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLASWCRL*ISSSSL
Trigger: CAAGGAGCTGGAGGAGATTCAGAGCCTGCACCAAGA...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTTGCTCAGCTGGTTCCTaGGCATGTCCGCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLCSAGS*ACPPPS
Trigger: AGAAGGAGGCGGACATGCTCAGGAACCAGCTGAGCA...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTAACCTCATCTTCTGCTaGAGCGAGGTCTCCCGTAGG +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLANLIFC*SEVSRR
Trigger: CCTACGGGAGACCTCGCTGCAGCAGAAGATGAGGTT...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGGCCTTCTCTGCCACTaGCAGAGCATCCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLAGLLCH*QSIQLH
Trigger: GTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCC...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTTCTTGCAGGGCACGCTaGAAGATGGCCTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPSCRAR*KMACSW
Trigger: CCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGA...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCGCAGTAACTCCACGGTaGCCTGAAGGTCAGCCCGAT +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSAVTPR*PEGQPD
Trigger: ATCGGGCTGACCTTCAGGCCACCGTGGAGTTACTGC...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCCTGTGCTGCAGGTCCTaGGCTTTGAGCTGCACCATG +
Preference number: 4 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGLCCRS*ALSCTM
Trigger: CATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAG...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCTGTGCTGCAGGTCCTaGGCTTTGAGCTGCACCATG +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLLCCRS*ALSCTM
Trigger: CATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAG...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCGCTCCTGACGGAGGCTaGCAGCTTCCTCCGTGCTCT +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSAPDGG*QLPPCS
Trigger: AGAGCACGGAGGAAGCTGCCAGCCTCCGTCAGGAGC...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTCTTGGTGCAGGCTCTaGATCTCCTCCAGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPSWCRL*ISSSSL
Trigger: CAAGGAGCTGGAGGAGATTCAGAGCCTGCACCAAGA...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCTCTTGGTGCAGGCTCTaGATCTCCTCCAGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSSWCRL*ISSSSL
Trigger: CAAGGAGCTGGAGGAGATTCAGAGCCTGCACCAAGA...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTTCCACCAAGGTCACCTaGGCTTCCAGCTCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLSTKVT*ASSSSW
Trigger: CCAAGAAGAGCTGGAAGCTCAGGTGACCTTGGTGGA...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCTCCAACCTCATCTTCTaGTGCAGCGAGGTCTCCCGT +
Preference number: 4 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGSNLIF*CSEVSR
Trigger: ACGGGAGACCTCGCTGCAGCAGAAGATGAGGTTGGA...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTCCAAGCCCTCGGCCTTaGTGGCCAGACTGTCGAGAG +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSPSPRP*WPDCRE
Trigger: CTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGG...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTCCATCCTGGTCATGGTaGTTTGGAGTTTGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAPSWSW*FGVWPE
Trigger: CTCAGGCCAAACTCCAAAGCACCATGACCAGGATGG...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAACTCAGCTGCAGCTCTaGATCCAGGCGGTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLATQLQL*IQAVPF
Trigger: GAACGGAACCGCCTGGATGCAGAGCTGCAGCTGAGT...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTAGGTGGGCACTCAGCTaGAGCTCTGCATCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSRWALS*SSASRR
Trigger: CCGCCTGGATGCAGAGCTGCAGCTGAGTGCCCACCT...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCTGGCCCCGACGTGCTaGCTCCAACTGCTGCCCAAC +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILLAPTC*LQLLPN
Trigger: GTTGGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAG...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCTCGGCCTCAGCTTaGCCGGCCTTCTCTGCCACT +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILPSASA*PAFSAT
Trigger: AGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGG...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATGCAGTAACTCCACGGTaGCCTGAAGGTCAGCCCGAT +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHAVTPR*PEGQPD
Trigger: ATCGGGCTGACCTTCAGGCCACCGTGGAGTTACTGC...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCACTGTGCTGCAGGTCCTaGGCTTTGAGCTGCACCATG +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLALCCRS*ALSCTM
Trigger: CATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAG...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTAAGATGGCCTGCTCCTaGCTTTGGGAGGTCACTTGC +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLKMACS*LWEVTC
Trigger: GCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTT...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTGGGCACGCTGCAAGATaGCCTGCTCCTGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSGHAAR*PAPGFG
Trigger: CCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCC...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTGTTCCTGCCTCCGCCTaGCCTCCTGAGCCTGATCCA +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSVPASA*PPEPDP
Trigger: TGGATCAGGCTCAGGAGGCCAGGCGGAGGCAGGAAC...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCATCCTGCTGGATCAGGTaGGCACTCAGCTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLASCWIR*ALSCSS
Trigger: AGAGCTGCAGCTGAGTGCCCACCTGATCCAGCAGGA...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGAAATATCTTCATCTCTaGAAATGGCCTCGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGKYLHL*KWPRSG
Trigger: GCCTGAGCGAGGCCATTTCCAGAGATGAAGATATTT...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGCTGAAGGAGGGTTCTTaGTTTTCTTGGTGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGLKEGS*FSWCSG
Trigger: ACCAGAACACCAAGAAAACCAAGAACCCTCCTTCAG...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTCAGCCCAGCAAAACCTaGCGGTGGCAACATCTTCCT +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPQPSKT*RWQHLP
Trigger: AGGAAGATGTTGCCACCGTCAGGTTTTGCTGGGCTG...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTTCCTGGGCTTTGAGCTaGACCATGAGGGCAAATACC +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLSWALS*TMRANT
Trigger: GGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGA...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTGTGGAGTCCCTGTGCTaGAGGTCCTGGGCTTTGAGC +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSVESLC*RSWALS
Trigger: GCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCAC...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTCAGCAGAGGCTATCTaGTGTTCCTGCCTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSSAEAI*CSCLRL
Trigger: CAGGCGGAGGCAGGAACAGCAGATAGCCTCTGCTGA...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCCATCCTGGTCATGGTaGTTTGGAGTTTGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLPSWSW*FGVWPE
Trigger: CTCAGGCCAAACTCCAAAGCACCATGACCAGGATGG...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCACTCAGCTGCAGCTCTaGATCCAGGCGGTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSTQLQL*IQAVPF
Trigger: GAACGGAACCGCCTGGATGCAGAGCTGCAGCTGAGT...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCCTCTCTAAGACATCTTaGCTGGCCGGAGATTGGACC +
Preference number: 4 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPLSKTS*LAGDWT
Trigger: GGTCCAATCTCCGGCCAGCCAAGATGTCTTAGAGAG...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTGGGTCTTGCTCAGCTaGTTCCTGAGCATGTCCGCC +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSWVLLS*FLSMSA
Trigger: GGCGGACATGCTCAGGAACCAGCTGAGCAAGACCCA...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCGCTTCCAGCTCTTCTTaGGTCTTGCTCAGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGASSSS*VLLSWF
Trigger: GAACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGC...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGAGGTCACTTGCTCCTaGAGCTCTGCTACCTGGATC +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLAEVTCS*SSATWI
Trigger: GATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTC...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGAGGTCACTTGCTCCTaGAGCTCTGCTACCTGGATC +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPEVTCS*SSATWI
Trigger: GATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTC...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTAAGATGGCCTGCTCCTaGCTTTGGGAGGTCACTTGC +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPKMACS*LWEVTC
Trigger: GCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTT...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTGGGCACGCTGCAAGATaGCCTGCTCCTGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILGHAAR*PAPGFG
Trigger: CCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCC...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTCCACCAAGGTCACCTaGGCTTCCAGCTCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSSTKVT*ASSSSW
Trigger: CCAAGAAGAGCTGGAAGCTCAGGTGACCTTGGTGGA...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCAACCTCATCTTCTGCTaGAGCGAGGTCTCCCGTAGG +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSNLIFC*SEVSRR
Trigger: CCTACGGGAGACCTCGCTGCAGCAGAAGATGAGGTT...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTCCTCCAGCTCCTTGTaGTTCGCCTCTTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSSSSSL*FASSRF
Trigger: GAACCTGGAAGAGGCGAAGCACAAGGAGCTGGAGGA...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCATCCTGGGCTTTGAGCTaGACCATGAGGGCAAATACC +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLASWALS*TMRANT
Trigger: GGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGA...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCCTGGGCTTTGAGCTaGACCATGAGGGCAAATACC +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHSWALS*TMRANT
Trigger: GGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGA...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCAGCAGAGGCTATCTaGTGTTCCTGCCTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSSAEAI*CSCLRL
Trigger: CAGGCGGAGGCAGGAACAGCAGATAGCCTCTGCTGA...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTACTCAGCTGCAGCTCTaGATCCAGGCGGTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSTQLQL*IQAVPF
Trigger: GAACGGAACCGCCTGGATGCAGAGCTGCAGCTGAGT...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCACTCTCCACAGTCCTTaGCATGGAATGGTAGGGCCG +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSTLHSP*HGMVGP
Trigger: CGGCCCTACCATTCCATGGCAAGGACTGTGGAGAGT...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATCATTCTTGGCAGAGTTaGAAGGGGCCGAGCTTGGAA +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHHSWQS*KGPSLE
Trigger: TTCCAAGCTCGGCCCCTTCCAACTCTGCCAAGAATG...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTGGGTCTTGCTCAGCTaGTTCCTGAGCATGTCCGCC +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSWVLLS*FLSMSA
Trigger: GGCGGACATGCTCAGGAACCAGCTGAGCAAGACCCA...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGCTTCCAGCTCTTCTTaGGTCTTGCTCAGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPASSSS*VLLSWF
Trigger: GAACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGC...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTAAGGCTGAATCTTCCTaGTCAGCTCCTCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLKAESS*SAPLPA
Trigger: TGCAGGAAGAGGAGCTGACCAGGAAGATTCAGCCTT...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTGCTGGATCAGGTaGGCACTCAGCTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSSCWIR*ALSCSS
Trigger: AGAGCTGCAGCTGAGTGCCCACCTGATCCAGCAGGA...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCTCCTTTTCCTGAGTaGCTTTGTGCTGGATCTGGC +
Preference number: 4 (lower is better)
Translates to: TQPSWGSSFRLASFFPLAAPFPE*LCAGSG
Trigger: GCCAGATCCAGCACAAAGCCACTCAGGAAAAGGAGC...TGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTTGCTCAGCTGGTTCCTaGGCATGTCCGCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILCSAGS*ACPPPS
Trigger: AGAAGGAGGCGGACATGCTCAGGAACCAGCTGAGCA...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCTTTGGAGTTTGGCCTaGGTGCTGTTCATAGCACCG +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSLWSLA*VLFIAP
Trigger: CGGTGCTATGAACAGCACTCAGGCCAAACTCCAAAG...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGCTCAGCAGTGGATCTaGAGGAGGGTTCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPAQQWI*RRVLGF
Trigger: AAAACCAAGAACCCTCCTTCAGATCCACTGCTGAGC...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGCTCCGGCCAAGGCGGTaGGCAGGCCCTCGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGLRPRR*AGPRPQ
Trigger: CTGAGGCCGAGGGCCTGCGCACCGCCTTGGCCGGAG...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCTCCAGCTCCTTGTaGTTCGCCTCTTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSSSSSL*FASSRF
Trigger: GAACCTGGAAGAGGCGAAGCACAAGGAGCTGGAGGA...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCACCACGAACTTCAACTaGTCTTCAGCAGAGGCTATC +
Preference number: 4 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGTTNFN*SSAEAI
Trigger: GATAGCCTCTGCTGAAGAGCAGTTGAAGTTCGTGGT...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCATCCTGGTCATGGTaGTTTGGAGTTTGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSPSWSW*FGVWPE
Trigger: CTCAGGCCAAACTCCAAAGCACCATGACCAGGATGG...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGGCCCGGCCCACCTCCTaGTGGATCAGGTGGGCACTC +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGARPTS*WIRWAL
Trigger: GAGTGCCCACCTGATCCAGCAGGAGGTGGGCCGGGC...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCATTCTTGGCAGAGTTaGAAGGGGCCGAGCTTGGAA +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSHSWQS*KGPSLE
Trigger: TTCCAAGCTCGGCCCCTTCCAACTCTGCCAAGAATG...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTATGTCCGCCTCCTTCTaGGCCATAGCCAGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILMSASF*AIASCL
Trigger: CAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACAT...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATAAGGCTGAATCTTCCTaGTCAGCTCCTCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHKAESS*SAPLPA
Trigger: TGCAGGAAGAGGAGCTGACCAGGAAGATTCAGCCTT...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGCTCCCCTTGCTCCCGTaGCCGGCCCACCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGLPLLP*PAHLLL
Trigger: CAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAG...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTAAGAGGAGACCCTCCTaGTTCAAGGTGGCCAGCATC +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILKRRPS*FKVASI
Trigger: GATGCTGGCCACCTTGAAGCAGGAGGGTCTCCTCTT...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTCATTCTTGGCAGAGTTaGAAGGGGCCGAGCTTGGAA +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSHSWQS*KGPSLE
Trigger: TTCCAAGCTCGGCCCCTTCCAACTCTGCCAAGAATG...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTCTTCATCTCTGGAAATaGCCTCGCTCAGGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSLHLWK*PRSGLA
Trigger: TGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAG...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCCTGAAGGAGGGTTCTTaGTTTTCTTGGTGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSLKEGS*FSWCSG
Trigger: ACCAGAACACCAAGAAAACCAAGAACCCTCCTTCAG...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGCTCTTGGAGCTGCCGTaGGATCAGCTCGGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGLLELP*DQLGLL
Trigger: CAGCAGGCCGAGCTGATCTCACGGCAGCTCCAAGAG...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTGCTCAGCAGTGGATCTaGAGGAGGGTTCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSAQQWI*RRVLGF
Trigger: AAAACCAAGAACCCTCCTTCAGATCCACTGCTGAGC...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCAGCTCCCATTCCTaGCTAGGAAACTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSSSSHS*LGNSGR
Trigger: TCTTCCTGAGTTTCCTAGCCAGGAATGGGAGCTGGA...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTGCTCCTTTTCCTGAGTaGCTTTGTGCTGGATCTGGC +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILAPFPE*LCAGSG
Trigger: GCCAGATCCAGCACAAAGCCACTCAGGAAAAGGAGC...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTGGTTCTTGGTTTTCTTaGTGTTCTGGTTATCTTCCA +
Preference number: 4 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAGSWFS*CSGYLP
Trigger: TGGAAGATAACCAGAACACCAAGAAAACCAAGAACC...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCCTCCGGCCAAGGCGGTaGGCAGGCCCTCGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSLRPRR*AGPRPQ
Trigger: CTGAGGCCGAGGGCCTGCGCACCGCCTTGGCCGGAG...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGCCCTCGGCCTCAGCTTaGCCGGCCTTCTCTGCCACT +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGPSASA*PAFSAT
Trigger: AGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGG...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTAAGGCTGAATCTTCCTaGTCAGCTCCTCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILKAESS*SAPLPA
Trigger: TGCAGGAAGAGGAGCTGACCAGGAAGATTCAGCCTT...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGGCCTGCTCCTGGCTTTaGGAGGTCACTTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGACSWL*EVTCSW
Trigger: CCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGC...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCAAATATCTTCATCTCTaGAAATGGCCTCGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSKYLHL*KWPRSG
Trigger: GCCTGAGCGAGGCCATTTCCAGAGATGAAGATATTT...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTGGTTCTTGGTTTTCTTaGTGTTCTGGTTATCTTCCA +
Preference number: 4 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLGSWFS*CSGYLP
Trigger: TGGAAGATAACCAGAACACCAAGAAAACCAAGAACC...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCGGTTCTTGGTTTTCTTaGTGTTCTGGTTATCTTCCA +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSGSWFS*CSGYLP
Trigger: TGGAAGATAACCAGAACACCAAGAAAACCAAGAACC...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGCCAAGCCCTCGGCCTTaGTGGCCAGACTGTCGAGAG +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGPSPRP*WPDCRE
Trigger: CTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGG...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCCTCCCCTTGCTCCCGTaGCCGGCCCACCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSLPLLP*PAHLLL
Trigger: CAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAG...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTGCTGGCCCCGACGTaGTGCCTCCAACTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRLLAPT*CLQLLP
Trigger: GGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAGCAG...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGAGCCCTCGGCCTTGCTaGCCAGACTGTCGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGSPRPC*PDCREP
Trigger: AGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCT...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGTCCTGCTGGATCAGGTaGGCACTCAGCTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGSCWIR*ALSCSS
Trigger: AGAGCTGCAGCTGAGTGCCCACCTGATCCAGCAGGA...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGTCCTGCTCCAGCTGCTaGGCCACCTCTATCAACCGT +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGSCSSC*ATSINR
Trigger: ACGGTTGATAGAGGTGGCCCAGCAGCTGGAGCAGGA...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGTCCAACCTCATCTTCTaGTGCAGCGAGGTCTCCCGT +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGSNLIF*CSEVSR
Trigger: ACGGGAGACCTCGCTGCAGCAGAAGATGAGGTTGGA...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGTTGCTCCTGGAGCTCTaGTACCTGGATCCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGLLLEL*YLDPQL
Trigger: CAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAA...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCGCCCGGCCCACCTCCTaGTGGATCAGGTGGGCACTC +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSARPTS*WIRWAL
Trigger: GAGTGCCCACCTGATCCAGCAGGAGGTGGGCCGGGC...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCGTTTTCTTGGTGTTCTaGTTATCTTCCACACAAATA +
Preference number: 4 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSVFLVF*LSSTQI
Trigger: TATTTGTGTGGAAGATAACCAGAACACCAAGAAAAC...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTCTTGGAGCTGCCGTaGGATCAGCTCGGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRLLELP*DQLGLL
Trigger: CAGCAGGCCGAGCTGATCTCACGGCAGCTCCAAGAG...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGTCCAGCTCCACGGCCTaGGTCTCCAACCTCATCTTC +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGSSSTA*VSNLIF
Trigger: GAAGATGAGGTTGGAGACTCAGGCCGTGGAGCTGGA...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCCCAGCTCCAGAGACCTaGCTCTCCGCCCTAGCCCCT +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSPAPET*LSALAP
Trigger: AGGGGCTAGGGCGGAGAGGCAGGTCTCTGGAGCTGG...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCAGGTCTGTGTCCAGTaGGGGTGCGGCTTCCGATGG +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRQVCVQ*GCGFRW
Trigger: CCATCGGAAGCCGCACCCCCACTGGACACAGACCTG...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGTCCTGCTCCAGCTGCTaGGCCACCTCTATCAACCGT +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGSCSSC*ATSINR
Trigger: ACGGTTGATAGAGGTGGCCCAGCAGCTGGAGCAGGA...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGGCTCCTGACGGAGGCTaGCAGCTTCCTCCGTGCTCT +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRAPDGG*QLPPCS
Trigger: AGAGCACGGAGGAAGCTGCCAGCCTCCGTCAGGAGC...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGGCTCCTTTTCCTGAGTaGCTTTGTGCTGGATCTGGC +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGAPFPE*LCAGSG
Trigger: GCCAGATCCAGCACAAAGCCACTCAGGAAAAGGAGC...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGAAGGGATCTAAAGGCTaGATCTTCCTGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGKGSKG*IFLVSS
Trigger: GGAGCTGACCAGGAAGATTCAGCCTTTAGATCCCTT...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGTTGCTCCTGGAGCTCTaGTACCTGGATCCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGLLLEL*YLDPQL
Trigger: CAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAA...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCGGAAGGGGCCGAGCTTaGAAGTGGGAGGGAGGAACC +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSGRGRA*KWEGGT
Trigger: GGTTCCTCCCTCCCACTTCCAAGCTCGGCCCCTTCC...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCACGGCCCACCTCCTGCTaGATCAGGTGGGCACTCAGC +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPRPTSC*IRWALS
Trigger: GCTGAGTGCCCACCTGATCCAGCAGGAGGTGGGCCG...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCGGCCTTCTCTGCCACTaGCAGAGCATCCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSGLLCH*QSIQLH
Trigger: GTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCC...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCACCACAGCCTTGGCCTaGTCCCTTCGGGCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSTTALA*SLRASF
Trigger: GAACGAGGCCCGAAGGGAGCAGGCCAAGGCTGTGGT...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTGGCCGAGCTTGGAAGTaGGAGGGAGGAACCAGCCCA +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGGRAWK*EGGTSP
Trigger: TGGGCTGGTTCCTCCCTCCCACTTCCAAGCTCGGCC...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTGGTCGGGGCCATTCTTaGCAGAGTTGGAAGGGGCCG +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGGRGHS*QSWKGP
Trigger: CGGCCCCTTCCAACTCTGCCAAGAATGGCCCCGACC...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTGTTCCTGCCTCCGCCTaGCCTCCTGAGCCTGATCCA +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGVPASA*PPEPDP
Trigger: TGGATCAGGCTCAGGAGGCCAGGCGGAGGCAGGAAC...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCCAGGTCTGTGTCCAGTaGGGGTGCGGCTTCCGATGG +
Preference number: 4 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSQVCVQ*GCGFRW
Trigger: CCATCGGAAGCCGCACCCCCACTGGACACAGACCTG...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCTCCAGCTCCACGGCCTaGGTCTCCAACCTCATCTTC +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSSSSTA*VSNLIF
Trigger: GAAGATGAGGTTGGAGACTCAGGCCGTGGAGCTGGA...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGTCCTCCAGCTCCTTGTaGTTCGCCTCTTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRSSSSL*FASSRF
Trigger: GAACCTGGAAGAGGCGAAGCACAAGGAGCTGGAGGA...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGGCCGAGCTTGGAAGTaGGAGGGAGGAACCAGCCCA +
Preference number: 4 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVGRAWK*EGGTSP
Trigger: TGGGCTGGTTCCTCCCTCCCACTTCCAAGCTCGGCC...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS-3UTR CCA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAAGCCCTCGGCCTTGCTaGCCAGACTGTCGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVSPRPC*PDCREP
Trigger: AGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCT...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS-3UTR CCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCATGTCCGCCTCCTTCTaGGCCATAGCCAGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSMSASF*AIASCL
Trigger: CAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACAT...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCGCAGTAACTCCACGGTaGCCTGAAGGTCAGCCCGAT +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSAVTPR*PEGQPD
Trigger: ATCGGGCTGACCTTCAGGCCACCGTGGAGTTACTGC...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGGAGGTCACTTGCTCCTaGAGCTCTGCTACCTGGATC +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPREVTCS*SSATWI
Trigger: GATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTC...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCATGCTCAGCTGGTTCCTaGGCATGTCCGCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPCSAGS*ACPPPS
Trigger: AGAAGGAGGCGGACATGCTCAGGAACCAGCTGAGCA...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGTTGCGCTCCTTTTCCTaGGTGGCTTTGTGCTGGATC +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRLRSFS*VALCWI
Trigger: GATCCAGCACAAAGCCACTCAGGAAAAGGAGCGCAA...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCATCAGCAGAGGCTATCTaGTGTTCCTGCCTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPSAEAI*CSCLRL
Trigger: CAGGCGGAGGCAGGAACAGCAGATAGCCTCTGCTGA...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGACCACGAACTTCAACTaGTCTTCAGCAGAGGCTATC +
Preference number: 4 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGTTNFN*SSAEAI
Trigger: GATAGCCTCTGCTGAAGAGCAGTTGAAGTTCGTGGT...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTCTCTAAGACATCTTaGCTGGCCGGAGATTGGACC +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRLSKTS*LAGDWT
Trigger: GGTCCAATCTCCGGCCAGCCAAGATGTCTTAGAGAG...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTCCTGCTCCAGCTGCTaGGCCACCTCTATCAACCGT +
Preference number: 4 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSSCSSC*ATSINR
Trigger: ACGGTTGATAGAGGTGGCCCAGCAGCTGGAGCAGGA...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCCTCCTGCTTCAAGGTaGCCAGCATCAGGTTCTTGT +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRPPASR*PASGSC
Trigger: ACAAGAACCTGATGCTGGCCACCTTGAAGCAGGAGG...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCACCAAGGTCACCTaGGCTTCCAGCTCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGSTKVT*ASSSSW
Trigger: CCAAGAAGAGCTGGAAGCTCAGGTGACCTTGGTGGA...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCACTTTGGGAGGTCACTTaGTCCTGGAGCTCTGCTACC +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPLWEVT*SWSSAT
Trigger: GGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAG...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGTCCAGCTCCCATTCCTaGCTAGGAAACTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRSSSHS*LGNSGR
Trigger: TCTTCCTGAGTTTCCTAGCCAGGAATGGGAGCTGGA...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCCTTCATCTCTGGAAATaGCCTCGCTCAGGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSLHLWK*PRSGLA
Trigger: TGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAG...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGGATCTAAAGGCTaGATCTTCCTGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSKGSKG*IFLVSS
Trigger: GGAGCTGACCAGGAAGATTCAGCCTTTAGATCCCTT...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTCTTTGGAGTTTGGCCTaGGTGCTGTTCATAGCACCG +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGLWSLA*VLFIAP
Trigger: CGGTGCTATGAACAGCACTCAGGCCAAACTCCAAAG...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCATTGCGCTCCTTTTCCTaGGTGGCTTTGTGCTGGATC +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPLRSFS*VALCWI
Trigger: GATCCAGCACAAAGCCACTCAGGAAAAGGAGCGCAA...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR TCA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCGCTCAGCAGTGGATCTaGAGGAGGGTTCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSAQQWI*RRVLGF
Trigger: AAAACCAAGAACCCTCCTTCAGATCCACTGCTGAGC...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTATTGCTCCTGGAGCTCTaGTACCTGGATCCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVLLLEL*YLDPQL
Trigger: CAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAA...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS-3UTR GCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAACTGCTAACAGGCGCTaGAGCATCAGGTTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPTANRR*SIRFLS
Trigger: GGACAAGAACCTGATGCTGCAGCGCCTGTTAGCAGT...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
CDS-3UTR CCA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCCTCTCTAAGACATCTTaGCTGGCCGGAGATTGGACC +
Preference number: 4 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSLSKTS*LAGDWT
Trigger: GGTCCAATCTCCGGCCAGCCAAGATGTCTTAGAGAG...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTCTTCATCTCTGGAAATaGCCTCGCTCAGGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGLHLWK*PRSGLA
Trigger: TGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAG...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGCTTCCAGCTCTTCTTaGGTCTTGCTCAGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVASSSS*VLLSWF
Trigger: GAACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGC...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
3UTR CAA 72 bp AGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTaGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: RQHYCHLYSLQS*NLVEAGVPRLA
Trigger: AGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR GCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAACCACGAACTTCAACTaGTCTTCAGCAGAGGCTATC +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPTTNFN*SSAEAI
Trigger: GATAGCCTCTGCTGAAGAGCAGTTGAAGTTCGTGGT...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
3UTR CAA 72 bp AACATCTCCAGGCAACACTATTGCCATCTTTATTCATaGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCA +
Preference number: 4 (lower is better)
Translates to: NISRQHYCHLYS*QSLNLVEAGVP
Trigger: TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS-3UTR CCA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCAAATATCTTCATCTCTaGAAATGGCCTCGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSKYLHL*KWPRSG
Trigger: GCCTGAGCGAGGCCATTTCCAGAGATGAAGATATTT...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTCTGAAGGAGGGTTCTTaGTTTTCTTGGTGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGLKEGS*FSWCSG
Trigger: ACCAGAACACCAAGAAAACCAAGAACCCTCCTTCAG...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAGTTTTCTTGGTGTTCTaGTTATCTTCCACACAAATA +
Preference number: 4 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPVFLVF*LSSTQI
Trigger: TATTTGTGTGGAAGATAACCAGAACACCAAGAAAAC...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CCA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGTTTTCTTGGTGTTCTaGTTATCTTCCACACAAATA +
Preference number: 4 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVVFLVF*LSSTQI
Trigger: TATTTGTGTGGAAGATAACCAGAACACCAAGAAAAC...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS-3UTR CAA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCGCGCTCGACCTCCCCTaGCTCCCGTGCCCGGCCCAC +
Preference number: 5 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSALDLP*LPCPAH
Trigger: GTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGC...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCGCGCTCGACCTCCCCTaGCTCCCGTGCCCGGCCCAC +
Preference number: 5 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPALDLP*LPCPAH
Trigger: GTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGC...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp GGCCACCTCTATCAACCGTCGGCGCTCGACCTCCCCTTGCTCCCGTaGCCGGCCCACCTCCTGCTGGATCAGGTGGGCACTCAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: GHLYQPSALDLPLLP*PAHLLLDQVGTQLQ
Trigger: CTGCAGCTGAGTGCCCACCTGATCCAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGCCGACGGTTGATAGAGGTGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp AGCTGCTGGGCCACCTCTATCAACCGTCGGCGCTCGACCTCCCCTTaGTCCCGTGCCCGGCCCACCTCCTGCTGGATCAGGTGGGCACTC +
Preference number: 5 (lower is better)
Translates to: SCWATSINRRRSTSP*SRARPTSCWIRWAL
Trigger: GAGTGCCCACCTGATCCAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGCCGACGGTTGATAGAGGTGGCCCAGCAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTGCCCTCGGCCTCAGCTaGGCCGGCCTTCTCTGCCAC +
Preference number: 5 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAALGLS*AGLLCH
Trigger: GTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGC...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CAAGGCGGTGCGCAGGCCCTCGGCCTCAGCTTGGCCGGCCTTCTCTaGCACTGCCAGAGCATCCAGCTCCACGGCCTGAGTCTCCAACCT +
Preference number: 5 (lower is better)
Translates to: QGGAQALGLSLAGLL*HCQSIQLHGLSLQP
Trigger: AGGTTGGAGACTCAGGCCGTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGCCTGCGCACCGCCTTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTGCCCTCGGCCTCAGCTaGGCCGGCCTTCTCTGCCAC +
Preference number: 5 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLALGLS*AGLLCH
Trigger: GTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGC...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp GGCAGGGCTAGGCTGGCCCCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGCCATTCTTGGCAGAGTaGGAAGGGGCCGAGCTTGGA +
Preference number: 5 (lower is better)
Translates to: GRARLAPTPFPPTQPSWGPFLAE*EGAELG
Trigger: TCCAAGCTCGGCCCCTTCCAACTCTGCCAAGAATGG...CCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGGGGCCAGCCTAGCCCTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTGCGCTCGACCTCCCCTaGCTCCCGTGCCCGGCCCAC +
Preference number: 5 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSALDLP*LPCPAH
Trigger: GTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGC...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CGGCCTGCTGGCTCAGGGCACTGGAGAACCCCAGCTCCAGAGACCTaGCTCTCCGCCCTAGCCCCTGCCCATCTCCACAGAAATCCTGTC +
Preference number: 5 (lower is better)
Translates to: RPAGSGHWRTPAPET*LSALAPAHLHRNPV
Trigger: GACAGGATTTCTGTGGAGATGGGCAGGGGCTAGGGCGGAGAGGCAGGTCTCTGGAGCTGGGGTTCTCCAGTGCCCTGAGCCAGCAGGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp GGTGCGCAGGCCCTCGGCCTCAGCTTGGCCGGCCTTCTCTGCCACTaGCAGAGCATCCAGCTCCACGGCCTGAGTCTCCAACCTCATCTT +
Preference number: 5 (lower is better)
Translates to: GAQALGLSLAGLLCH*QSIQLHGLSLQPHL
Trigger: AAGATGAGGTTGGAGACTCAGGCCGTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGCCTGCGCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp AGCCGCCGCAACTCTTGGAGCTGCCGTGAGATCAGCTCGGCCTGCTaGCTCAGGGCACTGGAGAACCCCAGCTCCAGAGACCTGCCTCTC +
Preference number: 5 (lower is better)
Translates to: SRRNSWSCREISSAC*LRALENPSSRDLPL
Trigger: GAGAGGCAGGTCTCTGGAGCTGGGGTTCTCCAGTGCCCTGAGCCAGCAGGCCGAGCTGATCTCACGGCAGCTCCAAGAGTTGCGGCGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTGGAAGGGGCCGAGCTaGGAAGTGGGAGGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAWKGPS*EVGGRN
Trigger: GTTCCTCCCTCCCACTTCCAAGCTCGGCCCCTTCCA...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTAAGGAAACCACAGCCTaGGCCTGCTCCCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAKETTA*ACSLRA
Trigger: GGCCCGAAGGGAGCAGGCCAAGGCTGTGGTTTCCTT...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTTGGAAGGGGCCGAGCTaGGAAGTGGGAGGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLWKGPS*EVGGRN
Trigger: GTTCCTCCCTCCCACTTCCAAGCTCGGCCCCTTCCA...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGAAGGGGCCGAGCTaGGAAGTGGGAGGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPWKGPS*EVGGRN
Trigger: GTTCCTCCCTCCCACTTCCAAGCTCGGCCCCTTCCA...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCAGGTCGGGGCCATTCTaGGCAGAGTTGGAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSRSGPF*AELEGA
Trigger: GGCCCCTTCCAACTCTGCCAAGAATGGCCCCGACCT...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCGCCATAGCCAGCTGCTaGGCTTCCCCTGCCCGTTTC +
Preference number: 5 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSAIASC*ASPARF
Trigger: GAAACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGC...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTGGCCTGCTCCTGGCTTaGGGAGGTCACTTGCTCCTG +
Preference number: 5 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLGLLLA*GGHLLL
Trigger: CAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCC...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp CAGCTCAACGCTCAGGTCTGTGTCCAGTGGGGGTGCGGCTTCCGATaGGGGAGAGCTCTCCACGCGCAACTGAGCAAGAGCCACCTTTCG +
Preference number: 5 (lower is better)
Translates to: QLNAQVCVQWGCGFR*GRALHAQLSKSHLS
Trigger: CGAAAGGTGGCTCTTGCTCAGTTGCGCGTGGAGAGCTCTCCCCCATCGGAAGCCGCACCCCCACTGGACACAGACCTGAGCGTTGAGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATGGCCTGCTCCTGGCTTaGGGAGGTCACTTGCTCCTG +
Preference number: 5 (lower is better)
Translates to: PHFLRPNPPGGPASGWLHGLLLA*GGHLLL
Trigger: CAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCC...ATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp AGCTGCGACGTGGAGTCCCTGTGCTGCAGGTCCTGGGCTTTGAGCTaGACCATGAGGGCAAATACCTTCTCCCGCCAGTTGCGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: SCDVESLCCRSWALS*TMRANTFSRQLRSS
Trigger: GCTGCTGCGCAACTGGCGGGAGAAGGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp TGGGAGGTCACTTGCTCCTGGAGCTCTGCTACCTGGATCCTCAGCTaGGACGTGGAGTCCCTGTGCTGCAGGTCCTGGGCTTTGAGCTGC +
Preference number: 5 (lower is better)
Translates to: WEVTCSWSSATWILS*DVESLCCRSWALSC
Trigger: GCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp CGCTGCAAGATGGCCTGCTCCTGGCTTTGGGAGGTCACTTGCTCCTaGAGCTCTGCTACCTGGATCCTCAGCTGCGACGTGGAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: RCKMACSWLWEVTCS*SSATWILSCDVESL
Trigger: CAGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCCATTCTTGGCAGAGTaGGAAGGGGCCGAGCTTGGA +
Preference number: 5 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLPFLAE*EGAELG
Trigger: TCCAAGCTCGGCCCCTTCCAACTCTGCCAAGAATGG...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp GACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCGCTTTGGGAGGTCACTaGCTCCTGGAGCTCTGCTAC +
Preference number: 5 (lower is better)
Translates to: DPTLLGVQLQAGFILPPGALGGH*LLELCY
Trigger: GTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGC...GCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCGGCCTGCTCCTGGCTTaGGGAGGTCACTTGCTCCTG +
Preference number: 5 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSGLLLA*GGHLLL
Trigger: CAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCC...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCTCCACCTGTGCAGTTTaGTCTTGCAGGGCACGCTGC +
Preference number: 5 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSSTCAV*SCRARC
Trigger: GCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGA...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 90 bp CTTGGCCTGCTCCCTTCGGGCCTCGTTCAGCCTCCTCTTTGTGTCTaGGAGCTGTTCCCGAAGCCGAGTTTCCACCTCGGCCACCTTCTC +
Preference number: 5 (lower is better)
Translates to: LGLLPSGLVQPPLCV*ELFPKPSFHLGHLL
Trigger: GAGAAGGTGGCCGAGGTGGAAACTCGGCTTCGGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACGAGGCCCGAAGGGAGCAGGCCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 90 bp TCAGCCGCTGACCCTCTTCCTTCCGGGCTTCATCCTGCAGGCGCCTaGGCTCCTGGTTGCGCTCCTTTTCCTGAGTGGCTTTGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: SAADPLPSGLHPAGA*APGCAPFPEWLCAG
Trigger: TCCAGCACAAAGCCACTCAGGAAAAGGAGCGCAACCAGGAGCTCAGGCGCCTGCAGGATGAAGCCCGGAAGGAAGAGGGTCAGCGGCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp ACCTGGATCCTCAGCTGCGACGTGGAGTCCCTGTGCTGCAGGTCCTaGGCTTTGAGCTGCACCATGAGGGCAAATACCTTCTCCCGCCAG +
Preference number: 5 (lower is better)
Translates to: TWILSCDVESLCCRS*ALSCTMRANTFSRQ
Trigger: CTGGCGGGAGAAGGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTATCTCCTCCAGCTCCTaGTGCTTCGCCTCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: SDPTLLGVQLQAGFILPPISSSS*CFASSR
Trigger: CCTGGAAGAGGCGAAGCACAAGGAGCTGGAGGAGAT...AGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCGTTCAGCCTCCTCTTaGTGTCTGAGAGCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLRSASS*CLRAVP
Trigger: GGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACG...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp TGGAGCTCTGCTACCTGGATCCTCAGCTGCGACGTGGAGTCCCTGTaGTGCAGGTCCTGGGCTTTGAGCTGCACCATGAGGGCAAATACC +
Preference number: 5 (lower is better)
Translates to: WSSATWILSCDVESL*CRSWALSCTMRANT
Trigger: GGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp ATCCGCTCCACCTCCACCTGTGCAGTTTTGTCTTGCAGGGCACGCTaGAAGATGGCCTGCTCCTGGCTTTGGGAGGTCACTTGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: IRSTSTCAVLSCRAR*KMACSWLWEVTCSW
Trigger: CCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGTGGAGCGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CTCTTGGTGCTCATCCGCTCCACCTCCACCTGTGCAGTTTTGTCTTaGAGGGCACGCTGCAAGATGGCCTGCTCCTGGCTTTGGGAGGTC +
Preference number: 5 (lower is better)
Translates to: LLVLIRSTSTCAVLS*RARCKMACSWLWEV
Trigger: GACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGTGGAGCGGATGAGCACCAAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CTCCATCTGCAGGCTCTTGGTGCTCATCCGCTCCACCTCCACCTGTaGAGTTTTGTCTTGCAGGGCACGCTGCAAGATGGCCTGCTCCTG +
Preference number: 5 (lower is better)
Translates to: LHLQALGAHPLHLHL*SFVLQGTLQDGLLL
Trigger: CAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGTGGAGCGGATGAGCACCAAGAGCCTGCAGATGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CAGCTGCCGGAGACTCAGAGGATGAGGACTCCACAGACCGGGGGCTaGACTTCTTATTCACTCCCGAGGGAAGCACTGCTAACAGGCGCT +
Preference number: 5 (lower is better)
Translates to: QLPETQRMRTPQTGG*TSYSLPREALLTGA
Trigger: AGCGCCTGTTAGCAGTGCTTCCCTCGGGAGTGAATAAGAAGTGCAGCCCCCGGTCTGTGGAGTCCTCATCCTCTGAGTCTCCGGCAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp GGCGCTGCTGCTTGTAACAGAAGAGGAGACCCTCCTGCTTCAAGGTaGCCAGCATCAGGTTCTTGTCCCTCTCCAGCTCCTGCACACGCC +
Preference number: 5 (lower is better)
Translates to: GAAACNRRGDPPASR*PASGSCPSPAPAHA
Trigger: GGCGTGTGCAGGAGCTGGAGAGGGACAAGAACCTGATGCTGGCCACCTTGAAGCAGGAGGGTCTCCTCTTCTGTTACAAGCAGCAGCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTAGCTTCCAGCTCTTCTaGGGTCTTGCTCAGCTGGTT +
Preference number: 5 (lower is better)
Translates to: PPHFLRPNPPGGPASGWLSFQLF*GLAQLV
Trigger: AACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGCT...AAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCTGGCAGCAGCTTCCAGCTCTTCTaGGGTCTTGCTCAGCTGGTT +
Preference number: 5 (lower is better)
Translates to: PTLLGVQLQAGFILPPGSSFQLF*GLAQLV
Trigger: AACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGCT...GCTGCCAGGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CATGTCCGCCTCCTTCTGGGCCATAGCCAGCTGCTTGGCTTCCCCTaGCCGTTTCGTTTCCAGGCTATTCAGAGACTTCTCCAAGCCCTC +
Preference number: 5 (lower is better)
Translates to: HVRLLLGHSQLLGFP*PFRFQAIQRLLQAL
Trigger: GAGGGCTTGGAGAAGTCTCTGAATAGCCTGGAAACGAAACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp AGCTGGTTCCTGAGCATGTCCGCCTCCTTCTGGGCCATAGCCAGCTaGTTGGCTTCCCCTGCCCGTTTCGTTTCCAGGCTATTCAGAGAC +
Preference number: 5 (lower is better)
Translates to: SWFLSMSASFWAIAS*LASPARFVSRLFRD
Trigger: GTCTCTGAATAGCCTGGAAACGAAACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACATGCTCAGGAACCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp AGCTCTGCTACCTGGATCCTCAGCTGCGACGTGGAGTCCCTGTGCTaGAGGTCCTGGGCTTTGAGCTGCACCATGAGGGCAAATACCTTC +
Preference number: 5 (lower is better)
Translates to: SSATWILSCDVESLC*RSWALSCTMRANTF
Trigger: GAAGGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp TCCACCTGTGCAGTTTTGTCTTGCAGGGCACGCTGCAAGATGGCCTaGTCCTGGCTTTGGGAGGTCACTTGCTCCTGGAGCTCTGCTACC +
Preference number: 5 (lower is better)
Translates to: STCAVLSCRARCKMA*SWLWEVTCSWSSAT
Trigger: GGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp TCGTTTCCAGGCTATTCAGAGACTTCTCCAAGCCCTCGGCCTTGCTaGCCAGACTGTCGAGAGCCTTCTGGTGAGCCTGTGTCAGGGAGG +
Preference number: 5 (lower is better)
Translates to: SFPGYSETSPSPRPC*PDCREPSGEPVSGR
Trigger: CCTCCCTGACACAGGCTCACCAGAAGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGAGAAGTCTCTGAATAGCCTGGAAACGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTATCTCCTCCAGCTCCTaGTGCTTCGCCTCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSISSSS*CFASSR
Trigger: CCTGGAAGAGGCGAAGCACAAGGAGCTGGAGGAGAT...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp GTTTCGTTTCCAGGCTATTCAGAGACTTCTCCAAGCCCTCGGCCTTaGTGGCCAGACTGTCGAGAGCCTTCTGGTGAGCCTGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: VSFPGYSETSPSPRP*WPDCREPSGEPVSG
Trigger: CCCTGACACAGGCTCACCAGAAGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGAGAAGTCTCTGAATAGCCTGGAAACGAAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp CTGCACTTCTTATTCACTCCCGAGGGAAGCACTGCTAACAGGCGCTaGAGCATCAGGTTCTTGTCCCTCTCCAGCTCCTGCACACGCCTC +
Preference number: 5 (lower is better)
Translates to: LHFLFTPEGSTANRR*SIRFLSLSSSCTRL
Trigger: GAGGCGTGTGCAGGAGCTGGAGAGGGACAAGAACCTGATGCTGCAGCGCCTGTTAGCAGTGCTTCCCTCGGGAGTGAATAAGAAGTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
CDS CCA 90 bp TCCGCCCTAGCCCCTGCCCATCTCCACAGAAATCCTGTCCCCACGTaGTCACTGTCGACCTCTGAGCATCTAGCCGTCTCTCTAAGACAT +
Preference number: 5 (lower is better)
Translates to: SALAPAHLHRNPVPT*SLSTSEHLAVSLRH
Trigger: ATGTCTTAGAGAGACGGCTAGATGCTCAGAGGTCGACAGTGACCACGTGGGGACAGGATTTCTGTGGAGATGGGCAGGGGCTAGGGCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTCCTTTCACAGATTCCTaGCACGAAGCAGCTGCCGGA +
Preference number: 5 (lower is better)
Translates to: HFLRPNPPGGPASGWLHSPFTDS*HEAAAG
Trigger: TCCGGCAGCTGCTTCGTGCAAGGAATCTGTGAAAGG...AGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CCCACCCCATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTGGGTTCTTGGTTTTCTaGGTGTTCTGGTTATCTTCC +
Preference number: 5 (lower is better)
Translates to: PTPFPPTQPSWGSSFRLAGFLVF*VFWLSS
Trigger: GGAAGATAACCAGAACACCAAGAAAACCAAGAACCC...AGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAATGGGGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp ATTTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCACTCTCCACAGTCCTaGCCATGGAATGGTAGGGCC +
Preference number: 5 (lower is better)
Translates to: ISSDPTLLGVQLQAGFILHSPQS*PWNGRA
Trigger: GGCCCTACCATTCCATGGCAAGGACTGTGGAGAGTG...AAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS TCA 90 bp GAATCTTCCTGGTCAGCTCCTCTTCCTGCAGGGCGAGCATGTGTGTaGGGCTCTGTACTCGTACCTGCAGTAACTCCACGGTGGCCTGAA +
Preference number: 5 (lower is better)
Translates to: ESSWSAPLPAGRACV*GSVLVPAVTPRWPE
Trigger: TTCAGGCCACCGTGGAGTTACTGCAGGTACGAGTACAGAGCCTCACACACATGCTCGCCCTGCAGGAAGAGGAGCTGACCAGGAAGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp GCAGGTTATCAAGCAGGACGGTCAGGGAGCCTTTCACAGATTCCTTaGACGAAGCAGCTGCCGGAGACTCAGAGGATGAGGACTCCACAG +
Preference number: 5 (lower is better)
Translates to: AGYQAGRSGSLSQIP*TKQLPETQRMRTPQ
Trigger: CTGTGGAGTCCTCATCCTCTGAGTCTCCGGCAGCTGCTTCGTGCAAGGAATCTGTGAAAGGCTCCCTGACCGTCCTGCTTGATAACCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCCCCGGGTTCTTGGTTTTCTaGGTGTTCTGGTTATCTTCC +
Preference number: 5 (lower is better)
Translates to: LRPNPPGGPASGWLHSSPGFLVF*VFWLSS
Trigger: GGAAGATAACCAGAACACCAAGAAAACCAAGAACCC...GGGGGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 90 bp CCCTTCCTCCTTAAGTGTCTACGGTCCCTGCAGCTCAGGACTCTCTaGACACAGTATAAGGAGCCCACTCTCCACAGTCCTTGCCATGGA +
Preference number: 5 (lower is better)
Translates to: PFLLKCLRSLQLRTL*TQYKEPTLHSPCHG
Trigger: TCCATGGCAAGGACTGTGGAGAGTGGGCTCCTTATACTGTGTCCAGAGAGTCCTGAGCTGCAGGGACCGTAGACACTTAAGGAGGAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGTCCAAGCCCTCGGCCTaGCTGGCCAGACTGTCGAGA +
Preference number: 5 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGSKPSA*LARLSR
Trigger: TCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGA...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 90 bp ACTTGTTCCCCCACATACTTCCTCAGACTCTCCACCAAGGTCACCTaGGCTTCCAGCTCTTCTTGGGTCTTGCTCAGCTGGTTCCTGAGC +
Preference number: 5 (lower is better)
Translates to: TCSPTYFLRLSTKVT*ASSSSWVLLSWFLS
Trigger: GCTCAGGAACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGCTCAGGTGACCTTGGTGGAGAGTCTGAGGAAGTATGTGGGGGAACAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 90 bp TGTGTGAGGCTCTGTACTCGTACCTGCAGTAACTCCACGGTGGCCTaGAGGTCAGCCCGATCCTCCTTCAAGTGCTTCAAGGTGTCTAGA +
Preference number: 5 (lower is better)
Translates to: CVRLCTRTCSNSTVA*RSARSSFKCFKVSR
Trigger: TCTAGACACCTTGAAGCACTTGAAGGAGGATCGGGCTGACCTTCAGGCCACCGTGGAGTTACTGCAGGTACGAGTACAGAGCCTCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp TCCAGTCACCTATGTTCCCCTTCCTCCTTAAGTGTCTACGGTCCCTaGAGCTCAGGACTCTCTGGACACAGTATAAGGAGCCCACTCTCC +
Preference number: 5 (lower is better)
Translates to: SSHLCSPSSLSVYGP*SSGLSGHSIRSPLS
Trigger: GGAGAGTGGGCTCCTTATACTGTGTCCAGAGAGTCCTGAGCTGCAGGGACCGTAGACACTTAAGGAGGAAGGGGAACATAGGTGACTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TTCCTCCGACCCAACCCTCCTGGGGGTCCAGCTTCAGGCTGGCTTCATTCTTCCGGGTTCTTGGTTTTCTaGGTGTTCTGGTTATCTTCC +
Preference number: 5 (lower is better)
Translates to: FLRPNPPGGPASGWLHSSGFLVF*VFWLSS
Trigger: GGAAGATAACCAGAACACCAAGAAAACCAAGAACCC...GGAAGAATGAAGCCAGCCTGAAGCTGGACCCCCAGGAGGGTTGGGTCGGAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCGCCCTCGGCCTCAGCTaGGCCGGCCTTCTCTGCCAC +
Preference number: 5 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSALGLS*AGLLCH
Trigger: GTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGC...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 90 bp TCCACACAAATATCTTCATCTCTGGAAATGGCCTCGCTCAGGCCTTaGAGGTTATCAAGCAGGACGGTCAGGGAGCCTTTCACAGATTCC +
Preference number: 5 (lower is better)
Translates to: STQISSSLEMASLRP*RLSSRTVREPFTDS
Trigger: GGAATCTGTGAAAGGCTCCCTGACCGTCCTGCTTGATAACCTGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAGATATTTGTGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGAGGTCGGGGCCATTCTaGGCAGAGTTGGAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRRSGPF*AELEGA
Trigger: GGCCCCTTCCAACTCTGCCAAGAATGGCCCCGACCT...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGTCCACCTGTGCAGTTTaGTCTTGCAGGGCACGCTGC +
Preference number: 5 (lower is better)
Translates to: YSLQSLNLVEAGVPRLAGSTCAV*SCRARC
Trigger: GCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGA...CCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCATCCAAGCCCTCGGCCTaGCTGGCCAGACTGTCGAGA +
Preference number: 5 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPSKPSA*LARLSR
Trigger: TCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGA...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTCCAAGCCCTCGGCCTaGCTGGCCAGACTGTCGAGA +
Preference number: 5 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSSKPSA*LARLSR
Trigger: TCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGA...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGGCTTTGGGAGGTCACTaGCTCCTGGAGCTCTGCTAC +
Preference number: 5 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRALGGH*LLELCY
Trigger: GTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGC...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAAGGAAACCACAGCCTaGGCCTGCTCCCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPKETTA*ACSLRA
Trigger: GGCCCGAAGGGAGCAGGCCAAGGCTGTGGTTTCCTT...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp ACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTAAGGAAACCACAGCCTaGGCCTGCTCCCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: TLLPSLFIAEFEFGRSWGKETTA*ACSLRA
Trigger: GGCCCGAAGGGAGCAGGCCAAGGCTGTGGTTTCCTT...ACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCTTGCTGGGGGTCTGAAGGAGGGTTCTaGGTTTTCTTGGTGTTCTGG +
Preference number: 5 (lower is better)
Translates to: FIAEFEFGRSWGSKACWGSEGGF*VFLVFW
Trigger: CCAGAACACCAAGAAAACCAAGAACCCTCCTTCAGA...CCCCCAGCAAGCCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAAGGTCGGGGCCATTCTaGGCAGAGTTGGAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVRSGPF*AELEGA
Trigger: GGCCCCTTCCAACTCTGCCAAGAATGGCCCCGACCT...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS-3UTR CAA 90 bp CTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCTCCACCTGTGCAGTTTaGTCTTGCAGGGCACGCTGC +
Preference number: 5 (lower is better)
Translates to: LLPSLFIAEFEFGRSWGSSTCAV*SCRARC
Trigger: GCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGA...GGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCAAGGCGTTCAGCCTCCTCTTaGTGTCTGAGAGCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: CHLYSLQSLNLVEAGVPRRSASS*CLRAVP
Trigger: GGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACG...CCTTGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCATCTCCTCCAGCTCCTaGTGCTTCGCCTCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSISSSS*CFASSR
Trigger: CCTGGAAGAGGCGAAGCACAAGGAGCTGGAGGAGAT...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCCGTTCAGCCTCCTCTTaGTGTCTGAGAGCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSRSASS*CLRAVP
Trigger: GGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACG...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCACCTTTCACAGATTCCTaGCACGAAGCAGCTGCCGGA +
Preference number: 5 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPPFTDS*HEAAAG
Trigger: TCCGGCAGCTGCTTCGTGCAAGGAATCTGTGAAAGG...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp CAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCAGCTTCCAGCTCTTCTaGGGTCTTGCTCAGCTGGTT +
Preference number: 5 (lower is better)
Translates to: QATLLPSLFIAEFEFGRSSFQLF*GLAQLV
Trigger: AACCAGCTGAGCAAGACCCAAGAAGAGCTGGAAGCT...GCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp TATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTAGAAGCTGGGGTTCCATCTGAAGGAGGGTTCTaGGTTTTCTTGGTGTTCTGG +
Preference number: 5 (lower is better)
Translates to: YCHLYSLQSLNLVEAGVPSEGGF*VFLVFW
Trigger: CCAGAACACCAAGAAAACCAAGAACCCTCCTTCAGA...TGGAACCCCAGCTTCTACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS-3UTR CAA 90 bp ATCTCCAGGCAACACTATTGCCATCTTTATTCATTGCAGAGTTTGAATTTGGTATCTGAAGGAGGGTTCTaGGTTTTCTTGGTGTTCTGG +
Preference number: 5 (lower is better)
Translates to: ISRQHYCHLYSLQSLNLVSEGGF*VFLVFW
Trigger: CCAGAACACCAAGAAAACCAAGAACCCTCCTTCAGA...TACCAAATTCAAACTCTGCAATGAATAAAGATGGCAATAGTGTTGCCTGGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045956.14
CDS GCA 72 bp GCGCAGGCCCTCGGCCTCAGCTTGGCCGGCCTTCTCTaGCACTGCCAGAGCATCCAGCTCCACGGCCTGAGT +
Preference number: 6 (lower is better)
Translates to: AQALGLSLAGLL*HCQSIQLHGLS
Trigger: ACTCAGGCCGTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGCCTGCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp GCCACCTCTATCAACCGTCGGCGCTCGACCTCCCCTTaGTCCCGTGCCCGGCCCACCTCCTGCTGGATCAGG +
Preference number: 6 (lower is better)
Translates to: ATSINRRRSTSP*SRARPTSCWIR
Trigger: CCTGATCCAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGCCGACGGTTGATAGAGGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp CTCTCCTGCTGGCCCCGACGTGCTGCCTCCAACTGCTaGCCAACGCTGGCCAGGGATTCCTGGGCACGCTGC +
Preference number: 6 (lower is better)
Translates to: LSCWPRRAASNC*PTLARDSWARC
Trigger: GCAGCGTGCCCAGGAATCCCTGGCCAGCGTTGGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAGCAGGAGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp GTGCTCTCCTGCTGGCCCCGACGTGCTGCCTCCAACTaGTGCCCAACGCTGGCCAGGGATTCCTGGGCACGC +
Preference number: 6 (lower is better)
Translates to: VLSCWPRRAASN*CPTLARDSWAR
Trigger: GCGTGCCCAGGAATCCCTGGCCAGCGTTGGGCAGCAGTTGGAGGCAGCACGTCGGGGCCAGCAGGAGAGCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp GGCCCCGACGTGCTGCCTCCAACTGCTGCCCAACGCTaGCCAGGGATTCCTGGGCACGCTGCAGCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: GPDVLPPTAAQR*PGIPGHAAAPA
Trigger: AGCAGGAGCTGCAGCGTGCCCAGGAATCCCTGGCCAGCGTTGGGCAGCAGTTGGAGGCAGCACGTCGGGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp TATCAACCGTCGGCGCTCGACCTCCCCTTGCTCCCGTaGCCGGCCCACCTCCTGCTGGATCAGGTGGGCACT +
Preference number: 6 (lower is better)
Translates to: YQPSALDLPLLP*PAHLLLDQVGT
Trigger: AGTGCCCACCTGATCCAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAGGTCGAGCGCCGACGGTTGATA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp GCCCTCGGCCTCAGCTTGGCCGGCCTTCTCTGCCACTaGCAGAGCATCCAGCTCCACGGCCTGAGTCTCCAA +
Preference number: 6 (lower is better)
Translates to: ALGLSLAGLLCH*QSIQLHGLSLQ
Trigger: TTGGAGACTCAGGCCGTGGAGCTGGATGCTCTGGCAGTGGCAGAGAAGGCCGGCCAAGCTGAGGCCGAGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp CGCAACTCTTGGAGCTGCCGTGAGATCAGCTCGGCCTaGTGGCTCAGGGCACTGGAGAACCCCAGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: RNSWSCREISSA*WLRALENPSSR
Trigger: TCTGGAGCTGGGGTTCTCCAGTGCCCTGAGCCAGCAGGCCGAGCTGATCTCACGGCAGCTCCAAGAGTTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp CAGGGCACGCTGCAAGATGGCCTGCTCCTGGCTTTGGGAGGTCACTaGCTCCTGGAGCTCTGCTACCTGGATCCTCAGCTGCGACGTGGA +
Preference number: 6 (lower is better)
Translates to: QGTLQDGLLLALGGH*LLELCYLDPQLRRG
Trigger: TCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp ACCTGGATCCTCAGCTGCGACGTGGAGTCCCTGTGCTaGAGGTCCTGGGCTTTGAGCTGCACCATGAGGGCA +
Preference number: 6 (lower is better)
Translates to: TWILSCDVESLC*RSWALSCTMRA
Trigger: TGCCCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp GCTACCTGGATCCTCAGCTGCGACGTGGAGTCCCTGTaGTGCAGGTCCTGGGCTTTGAGCTGCACCATGAGG +
Preference number: 6 (lower is better)
Translates to: ATWILSCDVESL*CRSWALSCTMR
Trigger: CCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp ACTTGCTCCTGGAGCTCTGCTACCTGGATCCTCAGCTaGGACGTGGAGTCCCTGTGCTGCAGGTCCTGGGCT +
Preference number: 6 (lower is better)
Translates to: TCSWSSATWILS*DVESLCCRSWA
Trigger: AGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp AACTCTTGGAGCTGCCGTGAGATCAGCTCGGCCTGCTaGCTCAGGGCACTGGAGAACCCCAGCTCCAGAGAC +
Preference number: 6 (lower is better)
Translates to: NSWSCREISSAC*LRALENPSSRD
Trigger: GTCTCTGGAGCTGGGGTTCTCCAGTGCCCTGAGCCAGCAGGCCGAGCTGATCTCACGGCAGCTCCAAGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp TTGCTCAGCTGGTTCCTGAGCATGTCCGCCTCCTTCTaGGCCATAGCCAGCTGCTTGGCTTCCCCTGCCCGT +
Preference number: 6 (lower is better)
Translates to: LLSWFLSMSASF*AIASCLASPAR
Trigger: ACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACATGCTCAGGAACCAGCTGAGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp TGCAGGGCACGCTGCAAGATGGCCTGCTCCTGGCTTTaGGAGGTCACTTGCTCCTGGAGCTCTGCTACCTGG +
Preference number: 6 (lower is better)
Translates to: CRARCKMACSWL*EVTCSWSSATW
Trigger: CCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 72 bp CTCCCTTCGGGCCTCGTTCAGCCTCCTCTTTGTGTCTaGGAGCTGTTCCCGAAGCCGAGTTTCCACCTCGGC +
Preference number: 6 (lower is better)
Translates to: LPSGLVQPPLCV*ELFPKPSFHLG
Trigger: GCCGAGGTGGAAACTCGGCTTCGGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACGAGGCCCGAAGGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 72 bp GACCCTCTTCCTTCCGGGCTTCATCCTGCAGGCGCCTaGGCTCCTGGTTGCGCTCCTTTTCCTGAGTGGCTT +
Preference number: 6 (lower is better)
Translates to: DPLPSGLHPAGA*APGCAPFPEWL
Trigger: AAGCCACTCAGGAAAAGGAGCGCAACCAGGAGCTCAGGCGCCTGCAGGATGAAGCCCGGAAGGAAGAGGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp CTGAGCATGTCCGCCTCCTTCTGGGCCATAGCCAGCTaGTTGGCTTCCCCTGCCCGTTTCGTTTCCAGGCTA +
Preference number: 6 (lower is better)
Translates to: LSMSASFWAIAS*LASPARFVSRL
Trigger: TAGCCTGGAAACGAAACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACATGCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp CTCCTGGCTTTGGGAGGTCACTTGCTCCTGGAGCTCTaGTACCTGGATCCTCAGCTGCGACGTGGAGTCCCT +
Preference number: 6 (lower is better)
Translates to: LLALGGHLLLEL*YLDPQLRRGVP
Trigger: AGGGACTCCACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp ATGGCCTGCTCCTGGCTTTGGGAGGTCACTTGCTCCTaGAGCTCTGCTACCTGGATCCTCAGCTGCGACGTG +
Preference number: 6 (lower is better)
Translates to: MACSWLWEVTCS*SSATWILSCDV
Trigger: CACGTCGCAGCTGAGGATCCAGGTAGCAGAGCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 72 bp GCTCATCCGCTCCACCTCCACCTGTGCAGTTTTGTCTaGCAGGGCACGCTGCAAGATGGCCTGCTCCTGGCT +
Preference number: 6 (lower is better)
Translates to: AHPLHLHLCSFV*QGTLQDGLLLA
Trigger: AGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGTGGAGCGGATGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp GAGATTGGACCAAGGGAACGTCTGAAGCCCAGGTCGGGGCCATTCTaGGCAGAGTTGGAAGGGGCCGAGCTTGGAAGTGGGAGGGAGGAA +
Preference number: 6 (lower is better)
Translates to: EIGPRERLKPRSGPF*AELEGAELGSGREE
Trigger: TTCCTCCCTCCCACTTCCAAGCTCGGCCCCTTCCAACTCTGCCAAGAATGGCCCCGACCTGGGCTTCAGACGTTCCCTTGGTCCAATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp GTCGAGAGCCTTCTGGTGAGCCTGTGTCAGGGAGGACAGCTGCTCTaGGTGCAGGCTCTGAATCTCCTCCAGCTCCTTGTGCTTCGCCTC +
Preference number: 6 (lower is better)
Translates to: VESLLVSLCQGGQLL*VQALNLLQLLVLRL
Trigger: GAGGCGAAGCACAAGGAGCTGGAGGAGATTCAGAGCCTGCACCAAGAGCAGCTGTCCTCCCTGACACAGGCTCACCAGAAGGCTCTCGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp GCTCTTGGTGCTCATCCGCTCCACCTCCACCTGTGCAGTTTTGTCTaGCAGGGCACGCTGCAAGATGGCCTGCTCCTGGCTTTGGGAGGT +
Preference number: 6 (lower is better)
Translates to: ALGAHPLHLHLCSFV*QGTLQDGLLLALGG
Trigger: ACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGTGGAGCGGATGAGCACCAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp CCAGGCTATTCAGAGACTTCTCCAAGCCCTCGGCCTTaGTGGCCAGACTGTCGAGAGCCTTCTGGTGAGCCT +
Preference number: 6 (lower is better)
Translates to: PGYSETSPSPRP*WPDCREPSGEP
Trigger: AGGCTCACCAGAAGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGAGAAGTCTCTGAATAGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp GCAGTTTTGTCTTGCAGGGCACGCTGCAAGATGGCCTaGTCCTGGCTTTGGGAGGTCACTTGCTCCTGGAGC +
Preference number: 6 (lower is better)
Translates to: AVLSCRARCKMA*SWLWEVTCSWS
Trigger: GCTCCAGGAGCAAGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp CTCATCCGCTCCACCTCCACCTGTGCAGTTTTGTCTTaGAGGGCACGCTGCAAGATGGCCTGCTCCTGGCTT +
Preference number: 6 (lower is better)
Translates to: LIRSTSTCAVLS*RARCKMACSWL
Trigger: AAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGTGGAGCGGATGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp GGCTATTCAGAGACTTCTCCAAGCCCTCGGCCTTGCTaGCCAGACTGTCGAGAGCCTTCTGGTGAGCCTGTG +
Preference number: 6 (lower is better)
Translates to: GYSETSPSPRPC*PDCREPSGEPV
Trigger: CACAGGCTCACCAGAAGGCTCTCGACAGTCTGGCCAGCAAGGCCGAGGGCTTGGAGAAGTCTCTGAATAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp CTCAGCTGCGACGTGGAGTCCCTGTGCTGCAGGTCCTaGGCTTTGAGCTGCACCATGAGGGCAAATACCTTC +
Preference number: 6 (lower is better)
Translates to: LSCDVESLCCRS*ALSCTMRANTF
Trigger: GAAGGTATTTGCCCTCATGGTGCAGCTCAAAGCCCAGGACCTGCAGCACAGGGACTCCACGTCGCAGCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 72 bp TGGCCTGCTCCCTTCGGGCCTCGTTCAGCCTCCTCTTaGTGTCTGAGAGCTGTTCCCGAAGCCGAGTTTCCA +
Preference number: 6 (lower is better)
Translates to: WPAPFGPRSASS*CLRAVPEAEFP
Trigger: TGGAAACTCGGCTTCGGGAACAGCTCTCAGACACAAAGAGGAGGCTGAACGAGGCCCGAAGGGAGCAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp TGGTTCCTGAGCATGTCCGCCTCCTTCTGGGCCATAGCCAGCTGCTaGGCTTCCCCTGCCCGTTTCGTTTCCAGGCTATTCAGAGACTTC +
Preference number: 6 (lower is better)
Translates to: WFLSMSASFWAIASC*ASPARFVSRLFRDF
Trigger: GAAGTCTCTGAATAGCCTGGAAACGAAACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGCCCAGAAGGAGGCGGACATGCTCAGGAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp TGGGCTTTGAGCTGCACCATGAGGGCAAATACCTTCTCCCGCCAGTaGCGCAGCAGCGAGCGGCACTTCTTAGGAAACTCGGGTTCCAAG +
Preference number: 6 (lower is better)
Translates to: WALSCTMRANTFSRQ*RSSERHFLGNSGSK
Trigger: CTTGGAACCCGAGTTTCCTAAGAAGTGCCGCTCGCTGCTGCGCAACTGGCGGGAGAAGGTATTTGCCCTCATGGTGCAGCTCAAAGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 72 bp TGGTCAGCTCCTCTTCCTGCAGGGCGAGCATGTGTGTaGGGCTCTGTACTCGTACCTGCAGTAACTCCACGG +
Preference number: 6 (lower is better)
Translates to: WSAPLPAGRACV*GSVLVPAVTPR
Trigger: CCGTGGAGTTACTGCAGGTACGAGTACAGAGCCTCACACACATGCTCGCCCTGCAGGAAGAGGAGCTGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS TCA 72 bp AGTCGGTTGCTGAGGCTGGGAATCCGGGCTACAGCCTaGTCCATCCTGGTCATGGTGCTTTGGAGTTTGGCC +
Preference number: 6 (lower is better)
Translates to: SRLLRLGIRATA*SILVMVLWSLA
Trigger: GGCCAAACTCCAAAGCACCATGACCAGGATGGATCAGGCTGTAGCCCGGATTCCCAGCCTCAGCAACCGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp ACCTCCACCTGTGCAGTTTTGTCTTGCAGGGCACGCTaGAAGATGGCCTGCTCCTGGCTTTGGGAGGTCACT +
Preference number: 6 (lower is better)
Translates to: TSTCAVLSCRAR*KMACSWLWEVT
Trigger: AGTGACCTCCCAAAGCCAGGAGCAGGCCATCTTGCAGCGTGCCCTGCAAGACAAAACTGCACAGGTGGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 72 bp CTTCTGGTGAGCCTGTGTCAGGGAGGACAGCTGCTCTaGGTGCAGGCTCTGAATCTCCTCCAGCTCCTTGTG +
Preference number: 6 (lower is better)
Translates to: LLVSLCQGGQLL*VQALNLLQLLV
Trigger: CACAAGGAGCTGGAGGAGATTCAGAGCCTGCACCAAGAGCAGCTGTCCTCCCTGACACAGGCTCACCAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp AAGGAGCCCACTCTCCACAGTCCTTGCCATGGAATGGTAGGGCCGTaGGGAAGCCCATCTAGGCACCATCGAGCCAGGATTTCTGAGTCA +
Preference number: 6 (lower is better)
Translates to: KEPTLHSPCHGMVGP*GSPSRHHRARISES
Trigger: TGACTCAGAAATCCTGGCTCGATGGTGCCTAGATGGGCTTCCCAACGGCCCTACCATTCCATGGCAAGGACTGTGGAGAGTGGGCTCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS GCA 72 bp CTCCTTCTGGGCCATAGCCAGCTGCTTGGCTTCCCCTaGCCGTTTCGTTTCCAGGCTATTCAGAGACTTCTC +
Preference number: 6 (lower is better)
Translates to: LLLGHSQLLGFP*PFRFQAIQRLL
Trigger: GAGAAGTCTCTGAATAGCCTGGAAACGAAACGGGCAGGGGAAGCCAAGCAGCTGGCTATGGCCCAGAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp TTATTCACTCCCGAGGGAAGCACTGCTAACAGGCGCTaGAGCATCAGGTTCTTGTCCCTCTCCAGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: LFTPEGSTANRR*SIRFLSLSSSC
Trigger: GCAGGAGCTGGAGAGGGACAAGAACCTGATGCTGCAGCGCCTGTTAGCAGTGCTTCCCTCGGGAGTGAATAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
CDS GCA 72 bp GAGACTCAGAGGATGAGGACTCCACAGACCGGGGGCTaGACTTCTTATTCACTCCCGAGGGAAGCACTGCTA +
Preference number: 6 (lower is better)
Translates to: ETQRMRTPQTGG*TSYSLPREALL
Trigger: TAGCAGTGCTTCCCTCGGGAGTGAATAAGAAGTGCAGCCCCCGGTCTGTGGAGTCCTCATCCTCTGAGTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp TGCAGGTTATCAAGCAGGACGGTCAGGGAGCCTTTCACAGATTCCTaGCACGAAGCAGCTGCCGGAGACTCAGAGGATGAGGACTCCACA +
Preference number: 6 (lower is better)
Translates to: CRLSSRTVREPFTDS*HEAAAGDSEDEDST
Trigger: TGTGGAGTCCTCATCCTCTGAGTCTCCGGCAGCTGCTTCGTGCAAGGAATCTGTGAAAGGCTCCCTGACCGTCCTGCTTGATAACCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp TGGACACAGTATAAGGAGCCCACTCTCCACAGTCCTTaGCATGGAATGGTAGGGCCGTTGGGAAGCCCATCT +
Preference number: 6 (lower is better)
Translates to: WTQYKEPTLHSP*HGMVGPLGSPS
Trigger: AGATGGGCTTCCCAACGGCCCTACCATTCCATGGCAAGGACTGTGGAGAGTGGGCTCCTTATACTGTGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173903.2
CDS CCA 72 bp ACTCGGGTTCCAAGGGATCTAAAGGCTGAATCTTCCTaGTCAGCTCCTCTTCCTGCAGGGCGAGCATGTGTG +
Preference number: 6 (lower is better)
Translates to: TRVPRDLKAESS*SAPLPAGRACV
Trigger: CACACATGCTCGCCCTGCAGGAAGAGGAGCTGACCAGGAAGATTCAGCCTTTAGATCCCTTGGAACCCGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS GCA 72 bp ATATCTTCATCTCTGGAAATGGCCTCGCTCAGGCCTTaGAGGTTATCAAGCAGGACGGTCAGGGAGCCTTTC +
Preference number: 6 (lower is better)
Translates to: ISSSLEMASLRP*RLSSRTVREPF
Trigger: GAAAGGCTCCCTGACCGTCCTGCTTGATAACCTGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAGATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 72 bp CAGCTCCCATTCCTGGCTAGGAAACTCAGGAAGAACTaGTTCCCCCACATACTTCCTCAGACTCTCCACCAA +
Preference number: 6 (lower is better)
Translates to: QLPFLARKLRKN*FPHILPQTLHQ
Trigger: TTGGTGGAGAGTCTGAGGAAGTATGTGGGGGAACAAGTTCTTCCTGAGTTTCCTAGCCAGGAATGGGAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 72 bp AATATCTTCATCTCTGGAAATGGCCTCGCTCAGGCCTaGCAGGTTATCAAGCAGGACGGTCAGGGAGCCTTT +
Preference number: 6 (lower is better)
Translates to: NIFISGNGLAQA*QVIKQDGQGAF
Trigger: AAAGGCTCCCTGACCGTCCTGCTTGATAACCTGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAGATATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 90 bp TTCCACACAAATATCTTCATCTCTGGAAATGGCCTCGCTCAGGCCTaGCAGGTTATCAAGCAGGACGGTCAGGGAGCCTTTCACAGATTC +
Preference number: 6 (lower is better)
Translates to: FHTNIFISGNGLAQA*QVIKQDGQGAFHRF
Trigger: GAATCTGTGAAAGGCTCCCTGACCGTCCTGCTTGATAACCTGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAGATATTTGTGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp GGTTATCTTCCACACAAATATCTTCATCTCTGGAAATaGCCTCGCTCAGGCCTTGCAGGTTATCAAGCAGGA +
Preference number: 6 (lower is better)
Translates to: GYLPHKYLHLWK*PRSGLAGYQAG
Trigger: TCCTGCTTGATAACCTGCAAGGCCTGAGCGAGGCCATTTCCAGAGATGAAGATATTTGTGTGGAAGATAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CAA 72 bp CTCAGCAGTGGATCTGAAGGAGGGTTCTTGGTTTTCTaGGTGTTCTGGTTATCTTCCACACAAATATCTTCA +
Preference number: 6 (lower is better)
Translates to: LSSGSEGGFLVF*VFWLSSTQISS
Trigger: TGAAGATATTTGTGTGGAAGATAACCAGAACACCAAGAAAACCAAGAACCCTCCTTCAGATCCACTGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp GGATCTGAAGGAGGGTTCTTGGTTTTCTTGGTGTTCTaGTTATCTTCCACACAAATATCTTCATCTCTGGAA +
Preference number: 6 (lower is better)
Translates to: GSEGGFLVFLVF*LSSTQISSSLE
Trigger: TTCCAGAGATGAAGATATTTGTGTGGAAGATAACCAGAACACCAAGAAAACCAAGAACCCTCCTTCAGATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2
CDS CCA 72 bp TCAGCAGTGGATCTGAAGGAGGGTTCTTGGTTTTCTTaGTGTTCTGGTTATCTTCCACACAAATATCTTCAT +
Preference number: 6 (lower is better)
Translates to: SAVDLKEGSWFS*CSGYLPHKYLH
Trigger: ATGAAGATATTTGTGTGGAAGATAACCAGAACACCAAGAAAACCAAGAACCCTCCTTCAGATCCACTGCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045956.14
ENSMUST00000164242.9
ENSMUST00000173903.2