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Pregenerated sensors for CCDC9B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045838

Ensembl transcript IDs: ENSMUST00000059997.10, ENSMUST00000059997.9

Found 171 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCACCCACACACTCTGCTCCCCTCATCTCCAGGTGTTCTCGCCCTaGCAGCTCCTCCTGGGTACCCTCCTTGCTTGGCTCCTTCCAGCC +
Preference number: 1 (lower is better)
Translates to: PTHTLCSPHLQVFSP*QLLLGTLLAWLLPA
Trigger: GGCTGGAAGGAGCCAAGCAAGGAGGGTACCCAGGAGGAGCTGGCAGGGCGAGAACACCTGGAGATGAGGGGAGCAGAGTGTGTGGGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 90 bp TCTCCAGGTGTTCTCGCCCTGCCAGCTCCTCCTGGGTACCCTCCTTaGTTGGCTCCTTCCAGCCCTGCATCTGGTTTCCCAGAGTTGTTT +
Preference number: 1 (lower is better)
Translates to: SPGVLALPAPPGYPP*LAPSSPASGFPELF
Trigger: AAACAACTCTGGGAAACCAGATGCAGGGCTGGAAGGAGCCAAGCAAGGAGGGTACCCAGGAGGAGCTGGCAGGGCGAGAACACCTGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp TCGGGAAGAGCTTCCTGCTGTTGCCCGCACTGCAGGCTTCTGGAATaGAGGTGTCCTGTGTTGGCTTCCATTCTCATCAATCCCCGGGAC +
Preference number: 1 (lower is better)
Translates to: SGRASCCCPHCRLLE*RCPVLASILINPRD
Trigger: GTCCCGGGGATTGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGCTCTTCCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 90 bp GCTTCTACAGATGAGAACAGCACTTGCCATTCAGCCTTGAGCTGTTaGATGACTGAGTGTCTTCCCTCCCTCCGGCTGGCAGAGTCACCC +
Preference number: 1 (lower is better)
Translates to: ASTDENSTCHSALSC*MTECLPSLRLAESP
Trigger: GGGTGACTCTGCCAGCCGGAGGGAGGGAAGACACTCAGTCATCCAACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATCTGTAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 90 bp GCTGTTGCCCGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTaGCTTCCATTCTCATCAATCCCCGGGACAGCTTTCCTCAGTACC +
Preference number: 1 (lower is better)
Translates to: AVARTAGFWNEGVLC*LPFSSIPGTAFLST
Trigger: GGTACTGAGGAAAGCTGTCCCGGGGATTGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp AAAGGCATGGTTATCAGAAAGGGGCTAGGCTGGCCATGCCAGCTTTaGGACTGCCTAGAGCTCAGGAGCCTGAAGGCTTGTGACTGGAGA +
Preference number: 1 (lower is better)
Translates to: KGMVIRKGLGWPCQL*DCLELRSLKACDWR
Trigger: TCTCCAGTCACAAGCCTTCAGGCTCCTGAGCTCTAGGCAGTCTCAAAGCTGGCATGGCCAGCCTAGCCCCTTTCTGATAACCATGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 90 bp CATCACACCCGGGGCTACCAGGCTTCTACAGATGAGAACAGCACTTaGCATTCAGCCTTGAGCTGTTGGATGACTGAGTGTCTTCCCTCC +
Preference number: 1 (lower is better)
Translates to: HHTRGYQASTDENST*HSALSCWMTECLPS
Trigger: GGAGGGAAGACACTCAGTCATCCAACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATCTGTAGAAGCCTGGTAGCCCCGGGTGTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 90 bp AAAGGAAGCCACAGCTTGTGCAGAGTCTGGATAATTCACCAGACGTaGGCCTCATGGGAGGGGCCTGGATGGAGTTGGAAAGACACATCC +
Preference number: 1 (lower is better)
Translates to: KGSHSLCRVWIIHQT*ASWEGPGWSWKDTS
Trigger: GGATGTGTCTTTCCAACTCCATCCAGGCCCCTCCCATGAGGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTGGCTTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 90 bp CTTTCTCGGGAAGAGCTTCCTGCTGTTGCCCGCACTGCAGGCTTCTaGAATGAAGGTGTCCTGTGTTGGCTTCCATTCTCATCAATCCCC +
Preference number: 1 (lower is better)
Translates to: LSREELPAVARTAGF*NEGVLCWLPFSSIP
Trigger: GGGGATTGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGCTCTTCCCGAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 90 bp CGGAGGAAGGCTCAGCACCTACTAGTGAGCTCTCTCATTTTCCCGTaGCAAAAGGAGAATCCTAGCACAGTTCAAAGAGCCCTGCTGGAT +
Preference number: 1 (lower is better)
Translates to: RRKAQHLLVSSLIFP*QKENPSTVQRALLD
Trigger: ATCCAGCAGGGCTCTTTGAACTGTGCTAGGATTCTCCTTTTGCCACGGGAAAATGAGAGAGCTCACTAGTAGGTGCTGAGCCTTCCTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 90 bp TTAGCTGAGGTTGCTAATCCTCTGACTGTACTGTGTGCTTGCTTTTaGATGGCCTTGGTGAGGGAAAGTGGAGAAGGAAGAGAGGGCAGG +
Preference number: 1 (lower is better)
Translates to: LAEVANPLTVLCACF*MALVRESGEGREGR
Trigger: CCTGCCCTCTCTTCCTTCTCCACTTTCCCTCACCAAGGCCATGCAAAAGCAAGCACACAGTACAGTCAGAGGATTAGCAACCTCAGCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp GTAAGGGGACTGAGGCTTTTAGAGGTTAACGTTGAGCAAGGTAGATaGGAGGTGCAGGGTTTAGTCTCTCAGACTCCAAGGTGTGCTTCG +
Preference number: 1 (lower is better)
Translates to: VRGLRLLEVNVEQGR*EVQGLVSQTPRCAS
Trigger: CGAAGCACACCTTGGAGTCTGAGAGACTAAACCCTGCACCTCTCATCTACCTTGCTCAACGTTAACCTCTAAAAGCCTCAGTCCCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 90 bp ATGCACTTAGCTGAGGTTGCTAATCCTCTGACTGTACTGTGTGCTTaGTTTTGCATGGCCTTGGTGAGGGAAAGTGGAGAAGGAAGAGAG +
Preference number: 1 (lower is better)
Translates to: MHLAEVANPLTVLCA*FCMALVRESGEGRE
Trigger: CTCTCTTCCTTCTCCACTTTCCCTCACCAAGGCCATGCAAAAGCAAGCACACAGTACAGTCAGAGGATTAGCAACCTCAGCTAAGTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp TCTCTGCCTGAACATGCTCTGTTCCAGTCCCATCTTGAGGAGTCATaGGCTCCAGGGCCTGTGTCACACTTCAAAGTCAAAATATACTTG +
Preference number: 1 (lower is better)
Translates to: SLPEHALFQSHLEES*APGPVSHFKVKIYL
Trigger: CAAGTATATTTTGACTTTGAAGTGTGACACAGGCCCTGGAGCTCATGACTCCTCAAGATGGGACTGGAACAGAGCATGTTCAGGCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 90 bp CCCCTAGTTCTTGCAGAGCTGGAAACTTGCTTTAGATCTAGAGTCTaGTCTAATCTGAACCCTTCACACTCGAATCCAGAACCTGACTCC +
Preference number: 1 (lower is better)
Translates to: PLVLAELETCFRSRV*SNLNPSHSNPEPDS
Trigger: GGAGTCAGGTTCTGGATTCGAGTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTCTGCAAGAACTAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp CCAGCCCCACTGAGTTCAACCTGTACCACACATCACACAAAAACATaGGAAGAGTTCTCTAAACAGCCTGACTTGCTGAAGAGTCAGTCA +
Preference number: 1 (lower is better)
Translates to: PAPLSSTCTTHHTKT*EEFSKQPDLLKSQS
Trigger: TGACTGACTCTTCAGCAAGTCAGGCTGTTTAGAGAACTCTTCTCATGTTTTTGTGTGATGTGTGGTACAGGTTGAACTCAGTGGGGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp TTGCAGAGCTGGAAACTTGCTTTAGATCTAGAGTCTGCTCTAATCTaGACCCTTCACACTCGAATCCAGAACCTGACTCCTCAAAGGGTT +
Preference number: 1 (lower is better)
Translates to: LQSWKLALDLESALI*TLHTRIQNLTPQRV
Trigger: AACCCTTTGAGGAGTCAGGTTCTGGATTCGAGTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTCTGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 90 bp ATCACACAAAAACATGAGAAGAGTTCTCTAAACAGCCTGACTTGCTaGAGAGTCAGTCACCCTTGCCTGAGTAGAGGGAATAGACATGGA +
Preference number: 1 (lower is better)
Translates to: ITQKHEKSSLNSLTC*RVSHPCLSRGNRHG
Trigger: TCCATGTCTATTCCCTCTACTCAGGCAAGGGTGACTGACTCTTCAGCAAGTCAGGCTGTTTAGAGAACTCTTCTCATGTTTTTGTGTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 90 bp CCAGGTGTTCTCGCCCTGCCAGCTCCTCCTGGGTACCCTCCTTGCTaGGCTCCTTCCAGCCCTGCATCTGGTTTCCCAGAGTTGTTTGTG +
Preference number: 2 (lower is better)
Translates to: PGVLALPAPPGYPPC*APSSPASGFPELFV
Trigger: CACAAACAACTCTGGGAAACCAGATGCAGGGCTGGAAGGAGCCAAGCAAGGAGGGTACCCAGGAGGAGCTGGCAGGGCGAGAACACCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp AGGCAGGGTGGGTCTCTTCAGGCACCTACCCTCATCACACCCGGGGCTACCAGGGATGAGAACAGCACTTaGCATTCAGCCTTGAGCTGT +
Preference number: 2 (lower is better)
Translates to: RQGGSLQAPTLITPGATRDENST*HSALSC
Trigger: ACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATC...CCTGGTAGCCCCGGGTGTGATGAGGGTAGGTGCCTGAAGAGACCCACCCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp AGCCAGGAAACCTCTTCCACTTGGCAGGGTAGCATCCCCCTAGTTCTTGCAGAGAAGGGAGGAGGGGGCTaGATGGTGCCACCAAGATGC +
Preference number: 2 (lower is better)
Translates to: SQETSSTWQGSIPLVLAEKGGGG*MVPPRC
Trigger: GCATCTTGGTGGCACCATGCAGCCCCCTCCTCCCTT...CTCTGCAAGAACTAGGGGGATGCTACCCTGCCAAGTGGAAGAGGTTTCCTGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp TTGTGTACTTGTTGGAGGGAAGAGGGTTTCCTAAGGGAAGGAAGACTCTGGGTCTTCCCTCCCTCCGGCTaGCAGAGTCACCCTCGCCCA +
Preference number: 2 (lower is better)
Translates to: LCTCWREEGFLREGRLWVFPPSG*QSHPRP
Trigger: TGGGCGAGGGTGACTCTGCCAGCCGGAGGGAGGGAA...GACCCAGAGTCTTCCTTCCCTTAGGAAACCCTCTTCCCTCCAACAAGTACACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 90 bp GGCTACCAGGCTTCTACAGATGAGAACAGCACTTGCCATTCAGCCTaGAGCTGTTGGATGACTGAGTGTCTTCCCTCCCTCCGGCTGGCA +
Preference number: 2 (lower is better)
Translates to: GYQASTDENSTCHSA*SCWMTECLPSLRLA
Trigger: TGCCAGCCGGAGGGAGGGAAGACACTCAGTCATCCAACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATCTGTAGAAGCCTGGTAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp AGCTTCCTGCTGTTGCCCGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTATAATTCACCAGACGTaGGCCTCATGGGAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: SFLLLPALQASGMKVSCVIIHQT*ASWEGP
Trigger: AGGCCCCTCCCATGAGGCCCACGTCTGGTGAATTAT...AACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp AGCCAGGAAACCTCTTCCACTTGGCAGGGTAGCATCCCCCTAGTTCTTGCAGAGCCAAAAAGGAGGCCATaGCTCCCTCACCTGGGACAT +
Preference number: 2 (lower is better)
Translates to: SQETSSTWQGSIPLVLAEPKRRP*LPHLGH
Trigger: ATGTCCCAGGTGAGGGAGCCATGGCCTCCTTTTTGG...CTCTGCAAGAACTAGGGGGATGCTACCCTGCCAAGTGGAAGAGGTTTCCTGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp TGGCTTCCATTCTCATCAATCCCCGGGACAGCTTTCCTCAGTACCCTAAAGGCTGAGCCTGAAGGCTTGTaGCTGGAGAGGGAGAGTTGG +
Preference number: 2 (lower is better)
Translates to: WLPFSSIPGTAFLSTLKAEPEGL*LERESW
Trigger: CCAACTCTCCCTCTCCAGTCACAAGCCTTCAGGCTC...AGCCTTTAGGGTACTGAGGAAAGCTGTCCCGGGGATTGATGAGAATGGAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp AGCCACAGCTTGTGCAGAGTCTGGATAATTCACCAGACGTGGGCCTCATGGGAGTGTTCCTGTCAGCCATaGGCCCCAAACCACTTTCTC +
Preference number: 2 (lower is better)
Translates to: SHSLCRVWIIHQTWASWECSCQP*APNHFL
Trigger: GAGAAAGTGGTTTGGGGCTCATGGCTGACAGGAACA...CTCCCATGAGGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp AGCCACAGCTTGTGCAGAGTCTGGATAATTCACCAGACGTGGGCCTCATGGGAGTGTCTGATCTGGATATaGGGAGGAAGGCTCAGCACC +
Preference number: 2 (lower is better)
Translates to: SHSLCRVWIIHQTWASWECLIWI*GGRLST
Trigger: GGTGCTGAGCCTTCCTCCGCATATCCAGATCAGACA...CTCCCATGAGGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp CGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTGGCTTCCATTCTCATCAGAGGAGGGGGCTGCATaGTGCCACCAAGATGCAAAG +
Preference number: 2 (lower is better)
Translates to: RTAGFWNEGVLCWLPFSSEEGAA*CHQDAK
Trigger: CTTTGCATCTTGGTGGCACCATGCAGCCCCCTCCTC...TGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp AGCTTCCTGCTGTTGCCCGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTGAAACCTCTTCCACTTaGCAGGGTAGCATCCCCCTA +
Preference number: 2 (lower is better)
Translates to: SFLLLPALQASGMKVSCVETSST*QGSIPL
Trigger: TAGGGGGATGCTACCCTGCCAAGTGGAAGAGGTTTC...AACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp AGCCACAGCTTGTGCAGAGTCTGGATAATTCACCAGACGTGGGCCTCATGGGAGCTGAAGGCTTGTGACTaGAGAGGGAGAGTTGGCAAT +
Preference number: 2 (lower is better)
Translates to: SHSLCRVWIIHQTWASWELKACD*RGRVGN
Trigger: ATTGCCAACTCTCCCTCTCCAGTCACAAGCCTTCAG...CTCCCATGAGGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp GTGACCTGTGTCTTTTCCTGGAGAAGAGCTCCCCTTTCTCGGGAAGAGCTTCCTTCAGTCACCCTTGCCTaGGTAGAGGGAATAGACATG +
Preference number: 2 (lower is better)
Translates to: VTCVFSWRRAPLSREELPSVTLA*VEGIDM
Trigger: CATGTCTATTCCCTCTACTCAGGCAAGGGTGACTGA...AGGAAGCTCTTCCCGAGAAAGGGGAGCTCTTCTCCAGGAAAAGACACAGGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp CGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTGGCTTCCATTCTCATCAAGAGCTCTCTCTGCCTaGACATGCTCTGTTCCAGTC +
Preference number: 2 (lower is better)
Translates to: RTAGFWNEGVLCWLPFSSRALSA*TCSVPV
Trigger: GACTGGAACAGAGCATGTTCAGGCAGAGAGAGCTCT...TGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp AGCCAGGAAACCTCTTCCACTTGGCAGGGTAGCATCCCCCTAGTTCTTGCAGAGCACTGGCTGGATTACTaGGAGAAGATGCTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: SQETSSTWQGSIPLVLAEHWLDY*EKMLRK
Trigger: TTTCCTGAGCATCTTCTCCCAGTAATCCAGCCAGTG...CTCTGCAAGAACTAGGGGGATGCTACCCTGCCAAGTGGAAGAGGTTTCCTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp CTTCACACTCGAATCCAGAACCTGACTCCTCAAAGGGTTCTTCAGGCCAAAAAGCCCTCGCCCACTGGCTaGATTACTGGGAGAAGATGC +
Preference number: 2 (lower is better)
Translates to: LHTRIQNLTPQRVLQAKKPSPTG*ITGRRC
Trigger: GCATCTTCTCCCAGTAATCCAGCCAGTGGGCGAGGG...CTTTTTGGCCTGAAGAACCCTTTGAGGAGTCAGGTTCTGGATTCGAGTGTGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp TGGCTTCCATTCTCATCAATCCCCGGGACAGCTTTCCTCAGTACCCTAAAGGCTCTGTGTGCTTGCTTTTaGATGGCCTTGGTGAGGGAA +
Preference number: 2 (lower is better)
Translates to: WLPFSSIPGTAFLSTLKALCACF*MALVRE
Trigger: TTCCCTCACCAAGGCCATGCAAAAGCAAGCACACAG...AGCCTTTAGGGTACTGAGGAAAGCTGTCCCGGGGATTGATGAGAATGGAAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp TGCCACCAAGATGCAAAGGGCACATGCCATATCAAAAGAGGGGAGCAGAGGCAGACTGTACTGTGTGCTTaGTTTTGCATGGCCTTGGTG +
Preference number: 2 (lower is better)
Translates to: CHQDAKGTCHIKRGEQRQTVLCA*FCMALV
Trigger: CACCAAGGCCATGCAAAAGCAAGCACACAGTACAGT...CTGCCTCTGCTCCCCTCTTTTGATATGGCATGTGCCCTTTGCATCTTGGTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp TTGTGTACTTGTTGGAGGGAAGAGGGTTTCCTAAGGGAAGGAAGACTCTGGGTCCAAGAGATCCCAGCCTaGCCAATACACCAAGAGCCT +
Preference number: 2 (lower is better)
Translates to: LCTCWREEGFLREGRLWVQEIPA*PIHQEP
Trigger: AGGCTCTTGGTGTATTGGCCAGGCTGGGATCTCTTG...GACCCAGAGTCTTCCTTCCCTTAGGAAACCCTCTTCCCTCCAACAAGTACACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp CTAACGTTCAGGCCTTCCCCAGCCCCACTGAGTTCAACCTGTACCACACATCACTCTCTCATTTTCCCGTaGCAAAAGGAGAATCCTAGC +
Preference number: 2 (lower is better)
Translates to: LTFRPSPAPLSSTCTTHHSLIFP*QKENPS
Trigger: GCTAGGATTCTCCTTTTGCCACGGGAAAATGAGAGA...GTGATGTGTGGTACAGGTTGAACTCAGTGGGGCTGGGGAAGGCCTGAACGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp GAGCTGGAAACTTGCTTTAGATCTAGAGTCTGCTCTAATCTGAACCCTTCACACCTTCCCCAGCCCCACTaGGTTCAACCTGTACCACAC +
Preference number: 2 (lower is better)
Translates to: ELETCFRSRVCSNLNPSHLPQPH*VQPVPH
Trigger: GTGTGGTACAGGTTGAACTCAGTGGGGCTGGGGAAG...GTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp TGCCACCAAGATGCAAAGGGCACATGCCATATCAAAAGAGGGGAGCAGAGGCAGCCTGTGGAATTTTGCTaGATTGCTCAACCAGAAAGG +
Preference number: 2 (lower is better)
Translates to: CHQDAKGTCHIKRGEQRQPVEFC*IAQPER
Trigger: CCTTTCTGGTTGAGCAATGCAGCAAAATTCCACAGG...CTGCCTCTGCTCCCCTCTTTTGATATGGCATGTGCCCTTTGCATCTTGGTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp AGCTTCCTGCTGTTGCCCGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTACTAGTGTAGAGGTATaGATAAGAGGCCCTTACATG +
Preference number: 2 (lower is better)
Translates to: SFLLLPALQASGMKVSCVTSVEV*IRGPYM
Trigger: CATGTAAGGGCCTCTTATGCATACCTCTACACTAGT...AACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp TTGTGTACTTGTTGGAGGGAAGAGGGTTTCCTAAGGGAAGGAAGACTCTGGGTCACCTGTGGTCAAACTTaGCTTGCCCTGTGTTGTCTG +
Preference number: 2 (lower is better)
Translates to: LCTCWREEGFLREGRLWVTCGQT*LALCCL
Trigger: CAGACAACACAGGGCAAGGCAAGTTTGACCACAGGT...GACCCAGAGTCTTCCTTCCCTTAGGAAACCCTCTTCCCTCCAACAAGTACACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 90 bp TCAGACCTTTCAACAAAGCAACTAGGAAGAATCATGGCTGGCCCTTaGAGGCCTCAAGAGGAATGGTTGACCTGGGTTTCTTCTGCTCCA +
Preference number: 2 (lower is better)
Translates to: SDLSTKQLGRIMAGP*RPQEEWLTWVSSAP
Trigger: TGGAGCAGAAGAAACCCAGGTCAACCATTCCTCTTGAGGCCTCAAAGGGCCAGCCATGATTCTTCCTAGTTGCTTTGTTGAAAGGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp CTTCACACTCGAATCCAGAACCTGACTCCTCAAAGGGTTCTTCAGGCCAAAAAGTTTGCATGGCCTTGGTaGGGGAAAGTGGAGAAGGAA +
Preference number: 2 (lower is better)
Translates to: LHTRIQNLTPQRVLQAKKFAWPW*GKVEKE
Trigger: TTCCTTCTCCACTTTCCCTCACCAAGGCCATGCAAA...CTTTTTGGCCTGAAGAACCCTTTGAGGAGTCAGGTTCTGGATTCGAGTGTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR GCA 90 bp CGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTGGCTTCCATTCTCATCAGTCCCTGTGGAATTTTaGTGCATTGCTCAACCAGAA +
Preference number: 2 (lower is better)
Translates to: RTAGFWNEGVLCWLPFSSVPVEF*CIAQPE
Trigger: TTCTGGTTGAGCAATGCAGCAAAATTCCACAGGGAC...TGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp CTGGGTTTCTTCTGCTCCATAGTTGACTCTAACAGAGCAGGATGGCACAACCTGCATGGCTCCCTCACCTaGGACATGTTAGAAATGCTA +
Preference number: 2 (lower is better)
Translates to: LGFFCSIVDSNRAGWHNLHGSLT*DMLEML
Trigger: TAGCATTTCTAACATGTCCCAGGTGAGGGAGCCATG...CAGGTTGTGCCATCCTGCTCTGTTAGAGTCAACTATGGAGCAGAAGAAACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp CGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTGGCTTCCATTCTCATCAGACTGGAAGGCAAAATaGAAACGTGAATTTGGATTC +
Preference number: 2 (lower is better)
Translates to: RTAGFWNEGVLCWLPFSSDWKAK*KREFGF
Trigger: GAATCCAAATTCACGTTTTCATTTTGCCTTCCAGTC...TGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CCA 90 bp GAGCTGGAAACTTGCTTTAGATCTAGAGTCTGCTCTAATCTGAACCCTTCACACTCAGCCTTGAGCTGTTaGATGACTGAGTGTCTTCCC +
Preference number: 2 (lower is better)
Translates to: ELETCFRSRVCSNLNPSHSALSC*MTECLP
Trigger: GGGAAGACACTCAGTCATCCAACAGCTCAAGGCTGA...GTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR TCA 90 bp ACAGTTGGCAACATCAAGTGGGAAGCAAACTTTGAATCTTCTCTTTTCTCTCTCTGTGAGTCACCTGGATaGAAGGCATGGTTATCAGAA +
Preference number: 2 (lower is better)
Translates to: TVGNIKWEANFESSLFSLCESPG*KAWLSE
Trigger: TTCTGATAACCATGCCTTTCATCCAGGTGACTCACA...GAGAGAGAAAAGAGAAGATTCAAAGTTTGCTTCCCACTTGATGTTGCCAACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp ACACTCTGCTCCCCTCATCTCCAGGTGTTCTCGCCCTaGCAGCTCCTCCTGGGTACCCTCCTTGCTTGGCTC +
Preference number: 3 (lower is better)
Translates to: TLCSPHLQVFSP*QLLLGTLLAWL
Trigger: GAGCCAAGCAAGGAGGGTACCCAGGAGGAGCTGGCAGGGCGAGAACACCTGGAGATGAGGGGAGCAGAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp ACCAGCAGCCGTAACTCCCACCACACAGAAGACTCTTaGCTGAGTTCTCCCCTTCGCAGCCTAGCTCCCCAA +
Preference number: 3 (lower is better)
Translates to: TSSRNSHHTEDS*LSSPLRSLAPQ
Trigger: TTGGGGAGCTAGGCTGCGAAGGGGAGAACTCAGTCAAGAGTCTTCTGTGTGGTGGGAGTTACGGCTGCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp TCCCTCCGGCTGGCAGAGTCACCCTCGCCCACTGGCTaGATTACTGGGAGAAGATGCTCAGGAAATGTTTGT +
Preference number: 3 (lower is better)
Translates to: SLRLAESPSPTG*ITGRRCSGNVC
Trigger: ACAAACATTTCCTGAGCATCTTCTCCCAGTAATCCAGCCAGTGGGCGAGGGTGACTCTGCCAGCCGGAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp CCCTCATCACACCCGGGGCTACCAGGCTTCTACAGATaGGAACAGCACTTGCCATTCAGCCTTGAGCTGTTG +
Preference number: 3 (lower is better)
Translates to: PSSHPGLPGFYR*EQHLPFSLELL
Trigger: CAACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATCTGTAGAAGCCTGGTAGCCCCGGGTGTGATGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp CACAGCTTGTGCAGAGTCTGGATAATTCACCAGACGTaGGCCTCATGGGAGGGGCCTGGATGGAGTTGGAAA +
Preference number: 3 (lower is better)
Translates to: HSLCRVWIIHQT*ASWEGPGWSWK
Trigger: TTTCCAACTCCATCCAGGCCCCTCCCATGAGGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp GATGAGAACAGCACTTGCCATTCAGCCTTGAGCTGTTaGATGACTGAGTGTCTTCCCTCCCTCCGGCTGGCA +
Preference number: 3 (lower is better)
Translates to: DENSTCHSALSC*MTECLPSLRLA
Trigger: TGCCAGCCGGAGGGAGGGAAGACACTCAGTCATCCAACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp AGCCACAGCTTGTGCAGAGTCTGGATAATTCACCAGACGTGGGCCTCATGGGAGACAGGGATACCAGCCTaGAACAAGAGATCCCAGCCT +
Preference number: 3 (lower is better)
Translates to: SHSLCRVWIIHQTWASWETGIPA*NKRSQP
Trigger: AGGCTGGGATCTCTTGTTCAAGGCTGGTATCCCTGT...CTCCCATGAGGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp CAGGATGGCACAACCTGGACAGAGAGTTGGGAGGTGTaGCCTGTGTCTTTTCCTGGAGAAGAGCTCCCCTTT +
Preference number: 3 (lower is better)
Translates to: QDGTTWTESWEV*PVSFPGEELPF
Trigger: AAAGGGGAGCTCTTCTCCAGGAAAAGACACAGGTCACACCTCCCAACTCTCTGTCCAGGTTGTGCCATCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp CGCACTGCAGGCTTCTGGAATGAAGGTGTCCTGTGTTaGCTTCCATTCTCATCAATCCCCGGGACAGCTTTC +
Preference number: 3 (lower is better)
Translates to: RTAGFWNEGVLC*LPFSSIPGTAF
Trigger: GAAAGCTGTCCCGGGGATTGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp GTGACCTGTGTCTTTTCCTGGAGAAGAGCTCCCCTTTCTCGGGAAGAGCTTCCTACTGTGTGCTTGCTTTaGCATGGCCTTGGTGAGGGA +
Preference number: 3 (lower is better)
Translates to: VTCVFSWRRAPLSREELPTVCLL*HGLGEG
Trigger: TCCCTCACCAAGGCCATGCAAAAGCAAGCACACAGT...AGGAAGCTCTTCCCGAGAAAGGGGAGCTCTTCTCCAGGAAAAGACACAGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp GCTTCCTGCTGTTGCCCGCACTGCAGGCTTCTGGAATaGAGGTGTCCTGTGTTGGCTTCCATTCTCATCAAT +
Preference number: 3 (lower is better)
Translates to: ASCCCPHCRLLE*RCPVLASILIN
Trigger: ATTGATGAGAATGGAAGCCAACACAGGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp GCCCTTACATGGTGTCCCTGTGGAATTTTGCTGCATTaGTCAACCAGAAAGGTACCAGACTCCCACCAGCAG +
Preference number: 3 (lower is better)
Translates to: ALTWCPCGILLH*STRKVPDSHQQ
Trigger: CTGCTGGTGGGAGTCTGGTACCTTTCTGGTTGAGCAATGCAGCAAAATTCCACAGGGACACCATGTAAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp CGGGGCTACCAGGCTTCTACAGATGAGAACAGCACTTaGCATTCAGCCTTGAGCTGTTGGATGACTGAGTGT +
Preference number: 3 (lower is better)
Translates to: RGYQASTDENST*HSALSCWMTEC
Trigger: ACACTCAGTCATCCAACAGCTCAAGGCTGAATGGCAAGTGCTGTTCTCATCTGTAGAAGCCTGGTAGCCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp TTTTCCCTTTCTGGACTTCCTCTCAGCCACCACCTGTaGGCACGTCTAAAGCCAGGAAACCTCTTCCACTTG +
Preference number: 3 (lower is better)
Translates to: FSLSGLPLSHHL*ARLKPGNLFHL
Trigger: CAAGTGGAAGAGGTTTCCTGGCTTTAGACGTGCCCACAGGTGGTGGCTGAGAGGAAGTCCAGAAAGGGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp CTGGGTTTCTTCTGCTCCATAGTTGACTCTAACAGAGCAGGATGGCACAACCTGGGGGCCTGGATGGAGTaGGAAAGACACATCCTGATG +
Preference number: 3 (lower is better)
Translates to: LGFFCSIVDSNRAGWHNLGAWME*ERHILM
Trigger: CATCAGGATGTGTCTTTCCAACTCCATCCAGGCCCC...CAGGTTGTGCCATCCTGCTCTGTTAGAGTCAACTATGGAGCAGAAGAAACCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp GCACAACCTGGACAGAGAGTTGGGAGGTGTGACCTGTGTCTTTTCCTGGAGAAGACTGGAGAGGGAGAGTaGGCAATGACGAACTATAAG +
Preference number: 3 (lower is better)
Translates to: AQPGQRVGRCDLCLFLEKTGEGE*AMTNYK
Trigger: CTTATAGTTCGTCATTGCCAACTCTCCCTCTCCAGT...CTTCTCCAGGAAAAGACACAGGTCACACCTCCCAACTCTCTGTCCAGGTTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp GAGGCCTCAAGAGGAATGGTTGACCTGGGTTTCTTCTaGTCCATAGTTGACTCTAACAGAGCAGGATGGCAC +
Preference number: 3 (lower is better)
Translates to: EASRGMVDLGFF*SIVDSNRAGWH
Trigger: GTGCCATCCTGCTCTGTTAGAGTCAACTATGGAGCAGAAGAAACCCAGGTCAACCATTCCTCTTGAGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp CTCCTCAAAGGGTTCTTCAGGCCAAAAAGGAGGCCATaGCTCCCTCACCTGGGACATGTTAGAAATGCTAAC +
Preference number: 3 (lower is better)
Translates to: LLKGFFRPKRRP*LPHLGHVRNAN
Trigger: GTTAGCATTTCTAACATGTCCCAGGTGAGGGAGCCATGGCCTCCTTTTTGGCCTGAAGAACCCTTTGAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp TTCTTCTGCTCCATAGTTGACTCTAACAGAGCAGGATaGCACAACCTGGACAGAGAGTTGGGAGGTGTGACC +
Preference number: 3 (lower is better)
Translates to: FFCSIVDSNRAG*HNLDRELGGVT
Trigger: GGTCACACCTCCCAACTCTCTGTCCAGGTTGTGCCATCCTGCTCTGTTAGAGTCAACTATGGAGCAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp TTGTGTACTTGTTGGAGGGAAGAGGGTTTCCTAAGGGAAGGAAGACTCTGGGTCGGCTCCTACCAAATCTaGCTTGGTGGGAAATGCCTA +
Preference number: 3 (lower is better)
Translates to: LCTCWREEGFLREGRLWVGSYQI*LGGKCL
Trigger: TAGGCATTTCCCACCAAGCAAGATTTGGTAGGAGCC...GACCCAGAGTCTTCCTTCCCTTAGGAAACCCTCTTCCCTCCAACAAGTACACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp TTGTGTACTTGTTGGAGGGAAGAGGGTTTCCTAAGGGAAGGAAGACTCTGGGTCGATCGCATTGCACAGTaGGCAACATCAAGTGGGAAG +
Preference number: 3 (lower is better)
Translates to: LCTCWREEGFLREGRLWVDRIAQ*ATSSGK
Trigger: CTTCCCACTTGATGTTGCCAACTGTGCAATGCGATC...GACCCAGAGTCTTCCTTCCCTTAGGAAACCCTCTTCCCTCCAACAAGTACACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp GAACATGCTCTGTTCCAGTCCCATCTTGAGGAGTCATaGGCTCCAGGGCCTGTGTCACACTTCAAAGTCAAA +
Preference number: 3 (lower is better)
Translates to: EHALFQSHLEES*APGPVSHFKVK
Trigger: TTTGACTTTGAAGTGTGACACAGGCCCTGGAGCTCATGACTCCTCAAGATGGGACTGGAACAGAGCATGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp CATAAGAGGCCCTTACATGGTGTCCCTGTGGAATTTTaGTGCATTGCTCAACCAGAAAGGTACCAGACTCCC +
Preference number: 3 (lower is better)
Translates to: HKRPLHGVPVEF*CIAQPERYQTP
Trigger: GGGAGTCTGGTACCTTTCTGGTTGAGCAATGCAGCAAAATTCCACAGGGACACCATGTAAGGGCCTCTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp GCTGAGGTTGCTAATCCTCTGACTGTACTGTGTGCTTaGTTTTGCATGGCCTTGGTGAGGGAAAGTGGAGAA +
Preference number: 3 (lower is better)
Translates to: AEVANPLTVLCA*FCMALVRESGE
Trigger: TTCTCCACTTTCCCTCACCAAGGCCATGCAAAAGCAAGCACACAGTACAGTCAGAGGATTAGCAACCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp TGCCAGATTTTTACGTCCTCAACCTGTGGTCAAACTTaGCTTGCCCTGTGTTGTCTGACGGATCGCATTGCA +
Preference number: 3 (lower is better)
Translates to: CQIFTSSTCGQT*LALCCLTDRIA
Trigger: TGCAATGCGATCCGTCAGACAACACAGGGCAAGGCAAGTTTGACCACAGGTTGAGGACGTAAAAATCTGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp GCTCAGCACCTACTAGTGAGCTCTCTCATTTTCCCGTaGCAAAAGGAGAATCCTAGCACAGTTCAAAGAGCC +
Preference number: 3 (lower is better)
Translates to: AQHLLVSSLIFP*QKENPSTVQRA
Trigger: GGCTCTTTGAACTGTGCTAGGATTCTCCTTTTGCCACGGGAAAATGAGAGAGCTCACTAGTAGGTGCTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp CTTCACACTCGAATCCAGAACCTGACTCCTCAAAGGGTTCTTCAGGCCAAAAAGGACTGTACTGTGTGCTaGCTTTTGCATGGCCTTGGT +
Preference number: 3 (lower is better)
Translates to: LHTRIQNLTPQRVLQAKKDCTVC*LLHGLG
Trigger: ACCAAGGCCATGCAAAAGCAAGCACACAGTACAGTC...CTTTTTGGCCTGAAGAACCCTTTGAGGAGTCAGGTTCTGGATTCGAGTGTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp TCACCCTCGCCCACTGGCTGGATTACTGGGAGAAGATaGTCAGGAAATGTTTGTTGTATCAAAAGGAAGCCA +
Preference number: 3 (lower is better)
Translates to: SPSPTGWITGRR*SGNVCCIKRKP
Trigger: TGGCTTCCTTTTGATACAACAAACATTTCCTGAGCATCTTCTCCCAGTAATCCAGCCAGTGGGCGAGGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp TCTGTCTGTCTGTCTAAGACTGAACCTATGAGTTCATaGGTGCTGAGAATGGACTCTATCAACCTACGGCCC +
Preference number: 3 (lower is better)
Translates to: SVCLSKTEPMSS*VLRMDSINLRP
Trigger: GGGCCGTAGGTTGATAGAGTCCATTCTCAGCACGCATGAACTCATAGGTTCAGTCTTAGACAGACAGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp GAGCTGGAAACTTGCTTTAGATCTAGAGTCTGCTCTAATCTGAACCCTTCACACTGCTTTTGCATGGCCTaGGTGAGGGAAAGTGGAGAA +
Preference number: 3 (lower is better)
Translates to: ELETCFRSRVCSNLNPSHCFCMA*VRESGE
Trigger: TTCTCCACTTTCCCTCACCAAGGCCATGCAAAAGCA...GTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp CTATCAACCTACGGCCCAGCCAAGGATTCAGATTCCTaGTCACAGCCATTTCTTTGCAACATGTGGACTCAA +
Preference number: 3 (lower is better)
Translates to: LSTYGPAKDSDS*SQPFLCNMWTQ
Trigger: TTGAGTCCACATGTTGCAAAGAAATGGCTGTGATCAGGAATCTGAATCCTTGGCTGGGCCGTAGGTTGATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp GGTAGCATCCCCCTAGTTCTTGCAGAGCTGGAAACTTaGTTTAGATCTAGAGTCTGCTCTAATCTGAACCCT +
Preference number: 3 (lower is better)
Translates to: GSIPLVLAELET*FRSRVCSNLNP
Trigger: AGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTCTGCAAGAACTAGGGGGATGCTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp ACAGTTGGCAACATCAAGTGGGAAGCAAACTTTGAATCTTCTCTTTTCTCTCTCCCACACAGAAGACTCTaGACTGAGTTCTCCCCTTCG +
Preference number: 3 (lower is better)
Translates to: TVGNIKWEANFESSLFSLPHRRL*TEFSPS
Trigger: CGAAGGGGAGAACTCAGTCAAGAGTCTTCTGTGTGG...GAGAGAGAAAAGAGAAGATTCAAAGTTTGCTTCCCACTTGATGTTGCCAACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp GAGCTGGAAACTTGCTTTAGATCTAGAGTCTGCTCTAATCTGAACCCTTCACACCAGGAGATCCATGTATaGGGCTCCTACCAAATCTTG +
Preference number: 3 (lower is better)
Translates to: ELETCFRSRVCSNLNPSHQEIHV*GSYQIL
Trigger: CAAGATTTGGTAGGAGCCCAATACATGGATCTCCTG...GTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp CACGTCCTCTTAGTCCTCTCTAATAGCTCCTTCTCCTaGTTAGGTTCATTTGTAAAGACTGAACCAGAACCC +
Preference number: 3 (lower is better)
Translates to: HVLLVLSNSSFS*LGSFVKTEPEP
Trigger: GGGTTCTGGTTCAGTCTTTACAAATGAACCTAAGCAGGAGAAGGAGCTATTAGAGAGGACTAAGAGGACGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR GCA 72 bp CTTGCAGAGCTGGAAACTTGCTTTAGATCTAGAGTCTaGTCTAATCTGAACCCTTCACACTCGAATCCAGAA +
Preference number: 3 (lower is better)
Translates to: LAELETCFRSRV*SNLNPSHSNPE
Trigger: TTCTGGATTCGAGTGTGAAGGGTTCAGATTAGAGCAGACTCTAGATCTAAAGCAAGTTTCCAGCTCTGCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CCA 72 bp TCTGACGGATCGCATTGCACAGTTGGCAACATCAAGTaGGAAGCAAACTTTGAATCTTCTCTTTTCTCTCTC +
Preference number: 3 (lower is better)
Translates to: SDGSHCTVGNIK*EANFESSLFSL
Trigger: GAGAGAGAAAAGAGAAGATTCAAAGTTTGCTTCCCACTTGATGTTGCCAACTGTGCAATGCGATCCGTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR TCA 72 bp CTGAGTTCAACCTGTACCACACATCACACAAAAACATaGGAAGAGTTCTCTAAACAGCCTGACTTGCTGAAG +
Preference number: 3 (lower is better)
Translates to: LSSTCTTHHTKT*EEFSKQPDLLK
Trigger: CTTCAGCAAGTCAGGCTGTTTAGAGAACTCTTCTCATGTTTTTGTGTGATGTGTGGTACAGGTTGAACTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR-3UTR CAA 90 bp ACAGTTGGCAACATCAAGTGGGAAGCAAACTTTGAATCTTCTCTTTTCTCTCTCAAAGGAAGCCACAGCTaGTGCAGAGTCTGGATAATT +
Preference number: 3 (lower is better)
Translates to: TVGNIKWEANFESSLFSLKGSHS*CRVWII
Trigger: AATTATCCAGACTCTGCACAAGCTGTGGCTTCCTTT...GAGAGAGAAAAGAGAAGATTCAAAGTTTGCTTCCCACTTGATGTTGCCAACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp GAAGAGCTCCCCTTTCTCGGGAAGAGCTTCCTGCTGTaGCCCGCACTGCAGGCTTCTGGAATGAAGGTGTCC +
Preference number: 4 (lower is better)
Translates to: EELPFLGKSFLL*PALQASGMKVS
Trigger: GGACACCTTCATTCCAGAAGCCTGCAGTGCGGGCAACAGCAGGAAGCTCTTCCCGAGAAAGGGGAGCTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp GGTTATCAGAAAGGGGCTAGGCTGGCCATGCCAGCTTaGAGACTGCCTAGAGCTCAGGAGCCTGAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: GYQKGARLAMPA*RLPRAQEPEGL
Trigger: CAAGCCTTCAGGCTCCTGAGCTCTAGGCAGTCTCAAAGCTGGCATGGCCAGCCTAGCCCCTTTCTGATAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp TCTCTCTGCCTGAACATGCTCTGTTCCAGTCCCATCTaGAGGAGTCATGAGCTCCAGGGCCTGTGTCACACT +
Preference number: 4 (lower is better)
Translates to: SLCLNMLCSSPI*RSHELQGLCHT
Trigger: AGTGTGACACAGGCCCTGGAGCTCATGACTCCTCAAGATGGGACTGGAACAGAGCATGTTCAGGCAGAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp GGCCCTTACATGGTGTCCCTGTGGAATTTTGCTGCATaGCTCAACCAGAAAGGTACCAGACTCCCACCAGCA +
Preference number: 4 (lower is better)
Translates to: GPYMVSLWNFAA*LNQKGTRLPPA
Trigger: TGCTGGTGGGAGTCTGGTACCTTTCTGGTTGAGCAATGCAGCAAAATTCCACAGGGACACCATGTAAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp TATGGCCTAGGTAAGACCAGGACAGGGATACCAGCCTaGAACAAGAGATCCCAGCCTGGCCAATACACCAAG +
Preference number: 4 (lower is better)
Translates to: YGLGKTRTGIPA*NKRSQPGQYTK
Trigger: CTTGGTGTATTGGCCAGGCTGGGATCTCTTGTTCAAGGCTGGTATCCCTGTCCTGGTCTTACCTAGGCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp CTGCCAGATTTTTACGTCCTCAACCTGTGGTCAAACTaGCCTTGCCCTGTGTTGTCTGACGGATCGCATTGC +
Preference number: 4 (lower is better)
Translates to: LPDFYVLNLWSN*PCPVLSDGSHC
Trigger: GCAATGCGATCCGTCAGACAACACAGGGCAAGGCAAGTTTGACCACAGGTTGAGGACGTAAAAATCTGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp AGGAGATCCATGTATTGGGCTCCTACCAAATCTTGCTaGGTGGGAAATGCCTATGGCCTAGGTAAGACCAGG +
Preference number: 4 (lower is better)
Translates to: RRSMYWAPTKSC*VGNAYGLGKTR
Trigger: CCTGGTCTTACCTAGGCCATAGGCATTTCCCACCAAGCAAGATTTGGTAGGAGCCCAATACATGGATCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp AGCCCCAAACCACTTTCTCTAGGCCTCAAGCGACTGTaGAAATCCTGGTTTGGCCATCTTAGAAGAGCAGAA +
Preference number: 4 (lower is better)
Translates to: SPKPLSLGLKRL*KSWFGHLRRAE
Trigger: TTCTGCTCTTCTAAGATGGCCAAACCAGGATTTCAACAGTCGCTTGAGGCCTAGAGAAAGTGGTTTGGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp TCAACAAAGCAACTAGGAAGAATCATGGCTGGCCCTTaGAGGCCTCAAGAGGAATGGTTGACCTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: STKQLGRIMAGP*RPQEEWLTWVS
Trigger: AGAAACCCAGGTCAACCATTCCTCTTGAGGCCTCAAAGGGCCAGCCATGATTCTTCCTAGTTGCTTTGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp CAGGAAATGTTTGTTGTATCAAAAGGAAGCCACAGCTaGTGCAGAGTCTGGATAATTCACCAGACGTGGGCC +
Preference number: 4 (lower is better)
Translates to: QEMFVVSKGSHS*CRVWIIHQTWA
Trigger: GGCCCACGTCTGGTGAATTATCCAGACTCTGCACAAGCTGTGGCTTCCTTTTGATACAACAAACATTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp CTTGCCCTGTGTTGTCTGACGGATCGCATTGCACAGTaGGCAACATCAAGTGGGAAGCAAACTTTGAATCTT +
Preference number: 4 (lower is better)
Translates to: LALCCLTDRIAQ*ATSSGKQTLNL
Trigger: AAGATTCAAAGTTTGCTTCCCACTTGATGTTGCCAACTGTGCAATGCGATCCGTCAGACAACACAGGGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
3UTR CAA 72 bp CTGGATTACTGGGAGAAGATGCTCAGGAAATGTTTGTaGTATCAAAAGGAAGCCACAGCTTGTGCAGAGTCT +
Preference number: 4 (lower is better)
Translates to: LDYWEKMLRKCL*YQKEATACAES
Trigger: AGACTCTGCACAAGCTGTGGCTTCCTTTTGATACAACAAACATTTCCTGAGCATCTTCTCCCAGTAATCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.9
CDS CCA 90 bp GCCCTGGCCCAGTTTCTGCTGACCACCCTCTTCTCACCGGGAACCTaGCTGATGGTGACCGTGAGGCTGTCGGGTTGGAGGAGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: ALAQFLLTTLFSPGT*LMVTVRLSGWRSPG
Trigger: TCCAGGGCTCCTCCAACCCGACAGCCTCACGGTCACCATCAGCCAGGTTCCCGGTGAGAAGAGGGTGGTCAGCAGAAACTGGGCCAGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp GGACTTGGCTTTGTCCAGGTCCCACGGGCGGCTCCAGTCACCCTGTaGGTTTCTGTGCCGGGCAAGGCGGGCCAGGTCAATCTGCTCTCT +
Preference number: 5 (lower is better)
Translates to: GLGFVQVPRAAPVTL*VSVPGKAGQVNLLS
Trigger: AGAGAGCAGATTGACCTGGCCCGCCTTGCCCGGCACAGAAACCCACAGGGTGACTGGAGCCGCCCGTGGGACCTGGACAAAGCCAAGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp GCTGCCCATGGCCAGGTCCCTGTCCCTAGGCTTGTGGCAGTTCTGTaGCATGGACTTGGCTTTGTCCAGGTCCCACGGGCGGCTCCAGTC +
Preference number: 5 (lower is better)
Translates to: AAHGQVPVPRLVAVL*HGLGFVQVPRAAPV
Trigger: GACTGGAGCCGCCCGTGGGACCTGGACAAAGCCAAGTCCATGCCACAGAACTGCCACAAGCCTAGGGACAGGGACCTGGCCATGGGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp CTGGACTCCGGGGCTCCAGAACACCCTTCCCTGCTGAATCTGAGCTaGAAGTCATCTGCAAGGGTGCACGCCAGCTCCGGCCTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: LDSGAPEHPSLLNLS*KSSARVHASSGLLQ
Trigger: CTGGAGGAGGCCGGAGCTGGCGTGCACCCTTGCAGATGACTTCCAGCTCAGATTCAGCAGGGAAGGGTGTTCTGGAGCCCCGGAGTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp TTGTCCAGGTCCCACGGGCGGCTCCAGTCACCCTGTGGGTTTCTGTaGCGGGCAAGGCGGGCCAGGTCAATCTGCTCTCTCTCTTGTTTC +
Preference number: 5 (lower is better)
Translates to: LSRSHGRLQSPCGFL*RARRARSICSLSCF
Trigger: GAAACAAGAGAGAGAGCAGATTGACCTGGCCCGCCTTGCCCGGCACAGAAACCCACAGGGTGACTGGAGCCGCCCGTGGGACCTGGACAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 90 bp GCCAGCCCTGTCCTCCATGGGCTCTGGGGTCTGTGCTTTCCTCTGTaGCTCAGTGCAACTGTGGACTTCCAGCCCAGGCTGGTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: ASPVLHGLWGLCFPL*LSATVDFQPRLVVS
Trigger: ACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCACAGAGGAAAGCACAGACCCCAGAGCCCATGGAGGACAGGGCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp ACCTTCGGGCCCTGCCAGTTAGCCTCTCCTTCCCCTGGGCGTTGCTaGCTATGGTGGATGTCATCGAGGGTCTTCCAGATTGTCCACCCC +
Preference number: 5 (lower is better)
Translates to: TFGPCQLASPSPGRC*LWWMSSRVFQIVHP
Trigger: GGGGTGGACAATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCGAAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp ATGGGCTCTGGGGTCTGTGCTTTCCTCTGTGACTCAGTGCAACTGTaGACTTCCAGCCCAGGCTGGTGGTCAGTGCACCCCAGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: MGSGVCAFLCDSVQL*TSSPGWWSVHPRVC
Trigger: GCAGACCCTGGGGTGCACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCACAGAGGAAAGCACAGACCCCAGAGCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 90 bp GATTGTCCACCCCGACATTTTCCATCCAGGGATGATGGTGGGTGCTaGGGCTTCTGGTGGGTCCTAGGACCCTTCCTGCTGCCCATGGCC +
Preference number: 5 (lower is better)
Translates to: DCPPRHFPSRDDGGC*GFWWVLGPFLLPMA
Trigger: GGCCATGGGCAGCAGGAAGGGTCCTAGGACCCACCAGAAGCCTCAGCACCCACCATCATCCCTGGATGGAAAATGTCGGGGTGGACAATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp CGCAAGGCAACTATCCTACGGTCCAGCTCGGCATCTTTTTCCTCATaGCGGCGCATTGTGGACTCGGCTTTGTGGGGCCCGGCCAAATGC +
Preference number: 5 (lower is better)
Translates to: RKATILRSSSASFSS*RRIVDSALWGPAKC
Trigger: GCATTTGGCCGGGCCCCACAAAGCCGAGTCCACAATGCGCCGGCATGAGGAAAAAGATGCCGAGCTGGACCGTAGGATAGTTGCCTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp TGTCCTCCATGGGCTCTGGGGTCTGTGCTTTCCTCTGTGACTCAGTaGAACTGTGGACTTCCAGCCCAGGCTGGTGGTCAGTGCACCCCA +
Preference number: 5 (lower is better)
Translates to: CPPWALGSVLSSVTQ*NCGLPAQAGGQCTP
Trigger: TGGGGTGCACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCACAGAGGAAAGCACAGACCCCAGAGCCCATGGAGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp GGGCCCTGCCAGTTAGCCTCTCCTTCCCCTGGGCGTTGCTGCCTATaGTGGATGTCATCGAGGGTCTTCCAGATTGTCCACCCCGACATT +
Preference number: 5 (lower is better)
Translates to: GPCQLASPSPGRCCL*WMSSRVFQIVHPDI
Trigger: AATGTCGGGGTGGACAATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp GTGACTCAGTGCAACTGTGGACTTCCAGCCCAGGCTGGTGGTCAGTaGACCCCAGGGTCTGCTGCTCAGAACCATTTGGCCATGACACTG +
Preference number: 5 (lower is better)
Translates to: VTQCNCGLPAQAGGQ*TPGSAAQNHLAMTL
Trigger: CAGTGTCATGGCCAAATGGTTCTGAGCAGCAGACCCTGGGGTGCACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp CTCCGGCCTCCTCCAGATGTCCCCTTTGCCCTTGGGCTCCGCGCTTaGGTCGTGGGTTTCTCACTTACTATCCTTTTGGCCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: LRPPPDVPFALGLRA*VVGFSLTILLALAL
Trigger: CAAAGCCAAGGCCAAAAGGATAGTAAGTGAGAAACCCACGACCCAAGCGCGGAGCCCAAGGGCAAAGGGGACATCTGGAGGAGGCCGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp GGCTCTGCAGCATCTCATCTTCTTTCATGTCATACCTTCGGGCCCTaGCAGTTAGCCTCTCCTTCCCCTGGGCGTTGCTGCCTATGGTGG +
Preference number: 5 (lower is better)
Translates to: GSAASHLLSCHTFGP*QLASPSPGRCCLWW
Trigger: CCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCGAAGGTATGACATGAAAGAAGATGAGATGCTGCAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp GGTGACAGCAAGTTCCACCCGGTGCCCCATGCTGAAAGTACCCGGTaGGTCTGCAGCATCTTCATCATCTGTCAGTGTGGTAGTCACTCC +
Preference number: 5 (lower is better)
Translates to: GDSKFHPVPHAESTR*VCSIFIICQCGSHS
Trigger: GGAGTGACTACCACACTGACAGATGATGAAGATGCTGCAGACGCACCGGGTACTTTCAGCATGGGGCACCGGGTGGAACTTGCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp TCTGCACTGGGAGTCTTCGTGCTGCTCTGGCTTCCCTCCTGGCTCTaGAGCATCTCATCTTCTTTCATGTCATACCTTCGGGCCCTGCCA +
Preference number: 5 (lower is better)
Translates to: SALGVFVLLWLPSWL*SISSSFMSYLRALP
Trigger: TGGCAGGGCCCGAAGGTATGACATGAAAGAAGATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp TTCATGTCATACCTTCGGGCCCTGCCAGTTAGCCTCTCCTTCCCCTaGGCGTTGCTGCCTATGGTGGATGTCATCGAGGGTCTTCCAGAT +
Preference number: 5 (lower is better)
Translates to: FMSYLRALPVSLSFP*ALLPMVDVIEGLPD
Trigger: ATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCGAAGGTATGACATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp TGCCGACGATCTTCCTCGATCTCCTGGTACCTTCGTAGTAAGGCCTaGTTCTTCTTGCGCAAGGCAACTATCCTACGGTCCAGCTCGGCA +
Preference number: 5 (lower is better)
Translates to: CRRSSSISWYLRSKA*FFLRKATILRSSSA
Trigger: TGCCGAGCTGGACCGTAGGATAGTTGCCTTGCGCAAGAAGAACCAGGCCTTACTACGAAGGTACCAGGAGATCGAGGAAGATCGTCGGCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp TCTTCCTCTGCACTGGGAGTCTTCGTGCTGCTCTGGCTTCCCTCCTaGCTCTGCAGCATCTCATCTTCTTTCATGTCATACCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: SSSALGVFVLLWLPS*LCSISSSFMSYLRA
Trigger: GGCCCGAAGGTATGACATGAAAGAAGATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGCAGAGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp TCCGCTTCTGTACGAATTCTTCCTCTGCACTGGGAGTCTTCGTGCTaGTCTGGCTTCCCTCCTGGCTCTGCAGCATCTCATCTTCTTTCA +
Preference number: 5 (lower is better)
Translates to: SASVRILPLHWESSC*SGFPPGSAASHLLS
Trigger: TGAAAGAAGATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGCAGAGGAAGAATTCGTACAGAAGCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 90 bp AGGGTCTGCTGCTCAGAACCATTTGGCCATGACACTGGACTTTGCTaGGCCCCAGCCTTTGGACCGAGTATACATGTACTTTTTCCAGGC +
Preference number: 5 (lower is better)
Translates to: RVCCSEPFGHDTGLC*APAFGPSIHVLFPG
Trigger: GCCTGGAAAAAGTACATGTATACTCGGTCCAAAGGCTGGGGCTCAGCAAAGTCCAGTGTCATGGCCAAATGGTTCTGAGCAGCAGACCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 90 bp CTTCCTCGATCTCCTGGTACCTTCGTAGTAAGGCCTGGTTCTTCTTaGGCAAGGCAACTATCCTACGGTCCAGCTCGGCATCTTTTTCCT +
Preference number: 5 (lower is better)
Translates to: LPRSPGTFVVRPGSS*ARQLSYGPARHLFP
Trigger: AGGAAAAAGATGCCGAGCTGGACCGTAGGATAGTTGCCTTGCGCAAGAAGAACCAGGCCTTACTACGAAGGTACCAGGAGATCGAGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 90 bp TTCTGTACGAATTCTTCCTCTGCACTGGGAGTCTTCGTGCTGCTCTaGCTTCCCTCCTGGCTCTGCAGCATCTCATCTTCTTTCATGTCA +
Preference number: 5 (lower is better)
Translates to: FCTNSSSALGVFVLL*LPSWLCSISSSFMS
Trigger: TGACATGAAAGAAGATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGCAGAGGAAGAATTCGTACAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp TCCCACGGGCGGCTCCAGTCACCCTGTGGGTTTCTGTaGCGGGCAAGGCGGGCCAGGTCAATCTGCTCTCTC +
Preference number: 6 (lower is better)
Translates to: SHGRLQSPCGFL*RARRARSICSL
Trigger: GAGAGAGCAGATTGACCTGGCCCGCCTTGCCCGGCACAGAAACCCACAGGGTGACTGGAGCCGCCCGTGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp TCCCAGCTGGCCTCAGGGGACAGCCCCAAGGACTGTTaGGGAGGTGGACTTGAGACCACGCCTGGACTCCGG +
Preference number: 6 (lower is better)
Translates to: SQLASGDSPKDC*GGGLETTPGLR
Trigger: CCGGAGTCCAGGCGTGGTCTCAAGTCCACCTCCCCAACAGTCCTTGGGGCTGTCCCCTGAGGCCAGCTGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp TTTGTCCAGGTCCCACGGGCGGCTCCAGTCACCCTGTaGGTTTCTGTGCCGGGCAAGGCGGGCCAGGTCAAT +
Preference number: 6 (lower is better)
Translates to: FVQVPRAAPVTL*VSVPGKAGQVN
Trigger: ATTGACCTGGCCCGCCTTGCCCGGCACAGAAACCCACAGGGTGACTGGAGCCGCCCGTGGGACCTGGACAAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp GCCAGGTCCCTGTCCCTAGGCTTGTGGCAGTTCTGTGGCATGGACTaGGCTTTGTCCAGGTCCCACGGGCGGCTCCAGTCACCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: ARSLSLGLWQFCGMD*ALSRSHGRLQSPCG
Trigger: CCCACAGGGTGACTGGAGCCGCCCGTGGGACCTGGACAAAGCCAAGTCCATGCCACAGAACTGCCACAAGCCTAGGGACAGGGACCTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp GGCCAGGTCCCTGTCCCTAGGCTTGTGGCAGTTCTGTaGCATGGACTTGGCTTTGTCCAGGTCCCACGGGCG +
Preference number: 6 (lower is better)
Translates to: GQVPVPRLVAVL*HGLGFVQVPRA
Trigger: CGCCCGTGGGACCTGGACAAAGCCAAGTCCATGCCACAGAACTGCCACAAGCCTAGGGACAGGGACCTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp GTTTCTGTGCCGGGCAAGGCGGGCCAGGTCAATCTGCTCTCTCTCTaGTTTCCACTGCGTGTAGTCCCAGCTGGCCTCAGGGGACAGCCC +
Preference number: 6 (lower is better)
Translates to: VSVPGKAGQVNLLSL*FPLRVVPAGLRGQP
Trigger: GGGCTGTCCCCTGAGGCCAGCTGGGACTACACGCAGTGGAAACAAGAGAGAGAGCAGATTGACCTGGCCCGCCTTGCCCGGCACAGAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp GGGGCTCCAGAACACCCTTCCCTGCTGAATCTGAGCTaGAAGTCATCTGCAAGGGTGCACGCCAGCTCCGGC +
Preference number: 6 (lower is better)
Translates to: GAPEHPSLLNLS*KSSARVHASSG
Trigger: GCCGGAGCTGGCGTGCACCCTTGCAGATGACTTCCAGCTCAGATTCAGCAGGGAAGGGTGTTCTGGAGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 72 bp CGGGCCCTGCCAGTTAGCCTCTCCTTCCCCTGGGCGTaGCTGCCTATGGTGGATGTCATCGAGGGTCTTCCA +
Preference number: 6 (lower is better)
Translates to: RALPVSLSFPWA*LPMVDVIEGLP
Trigger: TGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp TCCCTGTCCCTAGGCTTGTGGCAGTTCTGTGGCATGGACTTGGCTTaGTCCAGGTCCCACGGGCGGCTCCAGTCACCCTGTGGGTTTCTG +
Preference number: 6 (lower is better)
Translates to: SLSLGLWQFCGMDLA*SRSHGRLQSPCGFL
Trigger: CAGAAACCCACAGGGTGACTGGAGCCGCCCGTGGGACCTGGACAAAGCCAAGTCCATGCCACAGAACTGCCACAAGCCTAGGGACAGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp TGCAACTGTGGACTTCCAGCCCAGGCTGGTGGTCAGTaGACCCCAGGGTCTGCTGCTCAGAACCATTTGGCC +
Preference number: 6 (lower is better)
Translates to: CNCGLPAQAGGQ*TPGSAAQNHLA
Trigger: GGCCAAATGGTTCTGAGCAGCAGACCCTGGGGTGCACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp CAGTTTCTGCTGACCACCCTCTTCTCACCGGGAACCTaGCTGATGGTGACCGTGAGGCTGTCGGGTTGGAGG +
Preference number: 6 (lower is better)
Translates to: QFLLTTLFSPGT*LMVTVRLSGWR
Trigger: CCTCCAACCCGACAGCCTCACGGTCACCATCAGCCAGGTTCCCGGTGAGAAGAGGGTGGTCAGCAGAAACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp TACCTTCGGGCCCTGCCAGTTAGCCTCTCCTTCCCCTaGGCGTTGCTGCCTATGGTGGATGTCATCGAGGGT +
Preference number: 6 (lower is better)
Translates to: YLRALPVSLSFP*ALLPMVDVIEG
Trigger: ACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCGAAGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp GGGGTCTGTGCTTTCCTCTGTGACTCAGTGCAACTGTaGACTTCCAGCCCAGGCTGGTGGTCAGTGCACCCC +
Preference number: 6 (lower is better)
Translates to: GVCAFLCDSVQL*TSSPGWWSVHP
Trigger: GGGGTGCACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCACAGAGGAAAGCACAGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 72 bp CTAGGCTTGTGGCAGTTCTGTGGCATGGACTTGGCTTaGTCCAGGTCCCACGGGCGGCTCCAGTCACCCTGT +
Preference number: 6 (lower is better)
Translates to: LGLWQFCGMDLA*SRSHGRLQSPC
Trigger: ACAGGGTGACTGGAGCCGCCCGTGGGACCTGGACAAAGCCAAGTCCATGCCACAGAACTGCCACAAGCCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 72 bp CTGTCCCTAGGCTTGTGGCAGTTCTGTGGCATGGACTaGGCTTTGTCCAGGTCCCACGGGCGGCTCCAGTCA +
Preference number: 6 (lower is better)
Translates to: LSLGLWQFCGMD*ALSRSHGRLQS
Trigger: TGACTGGAGCCGCCCGTGGGACCTGGACAAAGCCAAGTCCATGCCACAGAACTGCCACAAGCCTAGGGACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 72 bp CCCCGACATTTTCCATCCAGGGATGATGGTGGGTGCTaGGGCTTCTGGTGGGTCCTAGGACCCTTCCTGCTG +
Preference number: 6 (lower is better)
Translates to: PRHFPSRDDGGC*GFWWVLGPFLL
Trigger: CAGCAGGAAGGGTCCTAGGACCCACCAGAAGCCTCAGCACCCACCATCATCCCTGGATGGAAAATGTCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 72 bp GCACCCCAGGGTCTGCTGCTCAGAACCATTTGGCCATaGCACTGGACTTTGCTGAGCCCCAGCCTTTGGACC +
Preference number: 6 (lower is better)
Translates to: APQGLLLRTIWP*HWTLLSPSLWT
Trigger: GGTCCAAAGGCTGGGGCTCAGCAAAGTCCAGTGTCATGGCCAAATGGTTCTGAGCAGCAGACCCTGGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 72 bp GTCCTCCATGGGCTCTGGGGTCTGTGCTTTCCTCTGTaGCTCAGTGCAACTGTGGACTTCCAGCCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: VLHGLWGLCFPL*LSATVDFQPRL
Trigger: CAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCACAGAGGAAAGCACAGACCCCAGAGCCCATGGAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp ACTATCCTACGGTCCAGCTCGGCATCTTTTTCCTCATaGCGGCGCATTGTGGACTCGGCTTTGTGGGGCCCG +
Preference number: 6 (lower is better)
Translates to: TILRSSSASFSS*RRIVDSALWGP
Trigger: CGGGCCCCACAAAGCCGAGTCCACAATGCGCCGGCATGAGGAAAAAGATGCCGAGCTGGACCGTAGGATAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp ACACCCTTCCCTGCTGAATCTGAGCTGGAAGTCATCTaGAAGGGTGCACGCCAGCTCCGGCCTCCTCCAGAT +
Preference number: 6 (lower is better)
Translates to: TPFPAESELEVI*KGARQLRPPPD
Trigger: ATCTGGAGGAGGCCGGAGCTGGCGTGCACCCTTGCAGATGACTTCCAGCTCAGATTCAGCAGGGAAGGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp AGCCCAGGCTGGTGGTCAGTGCACCCCAGGGTCTGCTaGTCAGAACCATTTGGCCATGACACTGGACTTTGC +
Preference number: 6 (lower is better)
Translates to: SPGWWSVHPRVC*SEPFGHDTGLC
Trigger: GCAAAGTCCAGTGTCATGGCCAAATGGTTCTGAGCAGCAGACCCTGGGGTGCACTGACCACCAGCCTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp TCCAGCCCAGGCTGGTGGTCAGTGCACCCCAGGGTCTaGTGCTCAGAACCATTTGGCCATGACACTGGACTT +
Preference number: 6 (lower is better)
Translates to: SSPGWWSVHPRV*CSEPFGHDTGL
Trigger: AAGTCCAGTGTCATGGCCAAATGGTTCTGAGCAGCAGACCCTGGGGTGCACTGACCACCAGCCTGGGCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp TGTGACTCAGTGCAACTGTGGACTTCCAGCCCAGGCTaGTGGTCAGTGCACCCCAGGGTCTGCTGCTCAGAA +
Preference number: 6 (lower is better)
Translates to: CDSVQLWTSSPG*WSVHPRVCCSE
Trigger: TTCTGAGCAGCAGACCCTGGGGTGCACTGACCACCAGCCTGGGCTGGAAGTCCACAGTTGCACTGAGTCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 72 bp GGTCAGTGCACCCCAGGGTCTGCTGCTCAGAACCATTaGGCCATGACACTGGACTTTGCTGAGCCCCAGCCT +
Preference number: 6 (lower is better)
Translates to: GQCTPGSAAQNH*AMTLDFAEPQP
Trigger: AGGCTGGGGCTCAGCAAAGTCCAGTGTCATGGCCAAATGGTTCTGAGCAGCAGACCCTGGGGTGCACTGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp GCTCCGGCCTCCTCCAGATGTCCCCTTTGCCCTTGGGCTCCGCGCTaGGGTCGTGGGTTTCTCACTTACTATCCTTTTGGCCTTGGCTTT +
Preference number: 6 (lower is better)
Translates to: APASSRCPLCPWAPR*GRGFLTYYPFGLGF
Trigger: AAAGCCAAGGCCAAAAGGATAGTAAGTGAGAAACCCACGACCCAAGCGCGGAGCCCAAGGGCAAAGGGGACATCTGGAGGAGGCCGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp TCATACCTTCGGGCCCTGCCAGTTAGCCTCTCCTTCCCCTGGGCGTaGCTGCCTATGGTGGATGTCATCGAGGGTCTTCCAGATTGTCCA +
Preference number: 6 (lower is better)
Translates to: SYLRALPVSLSFPWA*LPMVDVIEGLPDCP
Trigger: TGGACAATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCGAAGGTATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp CCCTGCCAGTTAGCCTCTCCTTCCCCTGGGCGTTGCTaGCTATGGTGGATGTCATCGAGGGTCTTCCAGATT +
Preference number: 6 (lower is better)
Translates to: PCQLASPSPGRC*LWWMSSRVFQI
Trigger: AATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp CCTCCAGATGTCCCCTTTGCCCTTGGGCTCCGCGCTTaGGTCGTGGGTTTCTCACTTACTATCCTTTTGGCC +
Preference number: 6 (lower is better)
Translates to: PPDVPFALGLRA*VVGFSLTILLA
Trigger: GGCCAAAAGGATAGTAAGTGAGAAACCCACGACCCAAGCGCGGAGCCCAAGGGCAAAGGGGACATCTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp TTAGCCTCTCCTTCCCCTGGGCGTTGCTGCCTATGGTaGATGTCATCGAGGGTCTTCCAGATTGTCCACCCC +
Preference number: 6 (lower is better)
Translates to: LASPSPGRCCLW*MSSRVFQIVHP
Trigger: GGGGTGGACAATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp CCCCTCTGGGGAGGCTGGAATTGGGCTGGTTGCAGGCACGGTCTCTaGTCTGTCTGGCTCCCTTTCATTCCGCTTCTGTACGAATTCTTC +
Preference number: 6 (lower is better)
Translates to: PLWGGWNWAGCRHGL*SVWLPFIPLLYEFF
Trigger: GAAGAATTCGTACAGAAGCGGAATGAAAGGGAGCCAGACAGACAAGAGACCGTGCCTGCAACCAGCCCAATTCCAGCCTCCCCAGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 72 bp TCCAGATTGTCCACCCCGACATTTTCCATCCAGGGATaGTGGTGGGTGCTGAGGCTTCTGGTGGGTCCTAGG +
Preference number: 6 (lower is better)
Translates to: SRLSTPTFSIQG*WWVLRLLVGPR
Trigger: CCTAGGACCCACCAGAAGCCTCAGCACCCACCATCATCCCTGGATGGAAAATGTCGGGGTGGACAATCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp GCTTTGTTTTCCATGGTGACAGCAAGTTCCACCCGGTaGCCCATGCTGAAAGTACCCGGTGCGTCTGCAGCA +
Preference number: 6 (lower is better)
Translates to: ALFSMVTASSTR*PMLKVPGASAA
Trigger: TGCTGCAGACGCACCGGGTACTTTCAGCATGGGGCACCGGGTGGAACTTGCTGTCACCATGGAAAACAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp GCATCTCATCTTCTTTCATGTCATACCTTCGGGCCCTaGCAGTTAGCCTCTCCTTCCCCTGGGCGTTGCTGC +
Preference number: 6 (lower is better)
Translates to: ASHLLSCHTFGP*QLASPSPGRCC
Trigger: GCAGCAACGCCCAGGGGAAGGAGAGGCTAACTGGCAGGGCCCGAAGGTATGACATGAAAGAAGATGAGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp CAGTTAGCCTCTCCTTCCCCTGGGCGTTGCTGCCTATaGTGGATGTCATCGAGGGTCTTCCAGATTGTCCAC +
Preference number: 6 (lower is better)
Translates to: QLASPSPGRCCL*WMSSRVFQIVH
Trigger: GTGGACAATCTGGAAGACCCTCGATGACATCCACCATAGGCAGCAACGCCCAGGGGAAGGAGAGGCTAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 72 bp TCCTCCAGATGTCCCCTTTGCCCTTGGGCTCCGCGCTaGGGTCGTGGGTTTCTCACTTACTATCCTTTTGGC +
Preference number: 6 (lower is better)
Translates to: SSRCPLCPWAPR*GRGFLTYYPFG
Trigger: GCCAAAAGGATAGTAAGTGAGAAACCCACGACCCAAGCGCGGAGCCCAAGGGCAAAGGGGACATCTGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp CTCCGCGCTTGGGTCGTGGGTTTCTCACTTACTATCCTTTTGGCCTaGGCTTTGTTTTCCATGGTGACAGCAAGTTCCACCCGGTGCCCC +
Preference number: 6 (lower is better)
Translates to: LRAWVVGFSLTILLA*ALFSMVTASSTRCP
Trigger: GGGGCACCGGGTGGAACTTGCTGTCACCATGGAAAACAAAGCCAAGGCCAAAAGGATAGTAAGTGAGAAACCCACGACCCAAGCGCGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp GTACGAATTCTTCCTCTGCACTGGGAGTCTTCGTGCTaGTCTGGCTTCCCTCCTGGCTCTGCAGCATCTCAT +
Preference number: 6 (lower is better)
Translates to: VRILPLHWESSC*SGFPPGSAASH
Trigger: ATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGCAGAGGAAGAATTCGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 72 bp GCCTTTGGACCGAGTATACATGTACTTTTTCCAGGCTaGCGGCTGCTAGCTCCTCCCACAGAGAGGTCGAGG +
Preference number: 6 (lower is better)
Translates to: AFGPSIHVLFPG*RLLAPPTERSR
Trigger: CCTCGACCTCTCTGTGGGAGGAGCTAGCAGCCGCAAGCCTGGAAAAAGTACATGTATACTCGGTCCAAAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp TCTCCTGGTACCTTCGTAGTAAGGCCTGGTTCTTCTTaGGCAAGGCAACTATCCTACGGTCCAGCTCGGCAT +
Preference number: 6 (lower is better)
Translates to: SPGTFVVRPGSS*ARQLSYGPARH
Trigger: ATGCCGAGCTGGACCGTAGGATAGTTGCCTTGCGCAAGAAGAACCAGGCCTTACTACGAAGGTACCAGGAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp GGAGTCTTCGTGCTGCTCTGGCTTCCCTCCTGGCTCTaGAGCATCTCATCTTCTTTCATGTCATACCTTCGG +
Preference number: 6 (lower is better)
Translates to: GVFVLLWLPSWL*SISSSFMSYLR
Trigger: CCGAAGGTATGACATGAAAGAAGATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS GCA 72 bp CTCCCTTTCATTCCGCTTCTGTACGAATTCTTCCTCTaGACTGGGAGTCTTCGTGCTGCTCTGGCTTCCCTC +
Preference number: 6 (lower is better)
Translates to: LPFIPLLYEFFL*TGSLRAALASL
Trigger: GAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGCAGAGGAAGAATTCGTACAGAAGCGGAATGAAAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp GCACTGGGAGTCTTCGTGCTGCTCTGGCTTCCCTCCTaGCTCTGCAGCATCTCATCTTCTTTCATGTCATAC +
Preference number: 6 (lower is better)
Translates to: ALGVFVLLWLPS*LCSISSSFMSY
Trigger: GTATGACATGAAAGAAGATGAGATGCTGCAGAGCCAGGAGGGAAGCCAGAGCAGCACGAAGACTCCCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp TCTTCCTCGATCTCCTGGTACCTTCGTAGTAAGGCCTaGTTCTTCTTGCGCAAGGCAACTATCCTACGGTCC +
Preference number: 6 (lower is better)
Translates to: SSSISWYLRSKA*FFLRKATILRS
Trigger: GGACCGTAGGATAGTTGCCTTGCGCAAGAAGAACCAGGCCTTACTACGAAGGTACCAGGAGATCGAGGAAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CAA 90 bp TCTTCCTCGATCTCCTGGTACCTTCGTAGTAAGGCCTGGTTCTTCTaGCGCAAGGCAACTATCCTACGGTCCAGCTCGGCATCTTTTTCC +
Preference number: 6 (lower is better)
Translates to: SSSISWYLRSKAWFF*RKATILRSSSASFS
Trigger: GGAAAAAGATGCCGAGCTGGACCGTAGGATAGTTGCCTTGCGCAAGAAGAACCAGGCCTTACTACGAAGGTACCAGGAGATCGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS CCA 72 bp AATTGGGCTGGTTGCAGGCACGGTCTCTTGTCTGTCTaGCTCCCTTTCATTCCGCTTCTGTACGAATTCTTC +
Preference number: 6 (lower is better)
Translates to: NWAGCRHGLLSV*LPFIPLLYEFF
Trigger: GAAGAATTCGTACAGAAGCGGAATGAAAGGGAGCCAGACAGACAAGAGACCGTGCCTGCAACCAGCCCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10
CDS TCA 72 bp TGCTCAGAACCATTTGGCCATGACACTGGACTTTGCTaGGCCCCAGCCTTTGGACCGAGTATACATGTACTT +
Preference number: 6 (lower is better)
Translates to: CSEPFGHDTGLC*APAFGPSIHVL
Trigger: AAGTACATGTATACTCGGTCCAAAGGCTGGGGCTCAGCAAAGTCCAGTGTCATGGCCAAATGGTTCTGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059997.10