Pregenerated sensors for CCDC90B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030613Ensembl transcript IDs: ENSMUST00000032842.13, ENSMUST00000085017.5
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATAAGAATAAAATACCAAACACTTCATTTAGTCCACAAGCCCTTTaGAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGG | + |
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Preference number: 1 (lower is better) Translates to: HKNKIPNTSFSPQAL*RVCSEYILWSEQQR Trigger: CCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGTTTGGTATTTTATTCTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | GTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCAGCTATCGCCAAGCAAGTaGACACTGAGGCTGCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: VCSEYILWSEQQRQQRRQLSPSK*TLRLQD Trigger: ATCTTGCAGCCTCAGTGTTCACTTGCTTGGCGATAG...CTGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | GTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCAGACTGTTATTTCCTGCTaGGCTTTAGTCACCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: VCSEYILWSEQQRQQRRQTVISC*ALVTIS Trigger: GGAGATGGTGACTAAAGCTCAGCAGGAAATAACAGT...CTGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032842.13 |
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| CDS-3UTR TCA 90 bp | GTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCAGGCTTTTCTTGATCTGTaGACATGTCTGTCACTCTGC | + |
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Preference number: 4 (lower is better) Translates to: VCSEYILWSEQQRQQRRQAFLDL*TCLSLC Trigger: GCAGAGTGACAGACATGTTCACAGATCAAGAAAAGC...CTGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR GCA 90 bp | GTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCAGCCTATAAAACCCCAATaGTATCGCCAAGCAAGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VCSEYILWSEQQRQQRRQPIKPQ*YRQASE Trigger: TTCACTTGCTTGGCGATAGCATTGGGGTTTTATAGG...CTGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | GTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCAGATTTTCATTTTCTGCTaGGCTTTAGTCACCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VCSEYILWSEQQRQQRRQIFIFC*ALVTIS Trigger: GGAGATGGTGACTAAAGCTCAGCAGAAAATGAAAAT...CTGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085017.5 |
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| CDS-3UTR GCA 90 bp | GTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCAGGGCAAATTCATTGGTTaGTTCTATAAGTTGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: VCSEYILWSEQQRQQRRQGKFIG*FYKLLF Trigger: GAAAAGCAACTTATAGAAGCAACCAATGAATTTGCC...CTGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | AAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCGCTTTTCTTGATCTGTaGACATGTCTGTCACTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KPFEEFVVSTFYGVSSSGAFLDL*TCLSLC Trigger: GCAGAGTGACAGACATGTTCACAGATCAAGAAAAGC...GCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | AAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCCAAGCAAGTGAACACTaGGGCTGCAAGATAACGAAT | + |
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Preference number: 4 (lower is better) Translates to: KPFEEFVVSTFYGVSSSGQASEH*GCKITN Trigger: ATTCGTTATCTTGCAGCCTCAGTGTTCACTTGCTTG...GCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | CTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGACTATCGCCAAGCAAGTaGACACTGAGGCTGCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: LHLVHKPFEEFVVSTFYGLSPSK*TLRLQD Trigger: ATCTTGCAGCCTCAGTGTTCACTTGCTTGGCGATAG...TCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR TCA 90 bp | CTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGACAAGCAAGTGAACACTaGGGCTGCAAGATAACGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LHLVHKPFEEFVVSTFYGQASEH*GCKITN Trigger: ATTCGTTATCTTGCAGCCTCAGTGTTCACTTGCTTG...TCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR GCA 90 bp | CTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGACCTATAAAACCCCAATaGTATCGCCAAGCAAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: LHLVHKPFEEFVVSTFYGPIKPQ*YRQASE Trigger: TTCACTTGCTTGGCGATAGCATTGGGGTTTTATAGG...TCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR GCA 90 bp | TTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCGGCAAATTCATTGGTTaGTTCTATAAGTTGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LVHKPFEEFVVSTFYGVSGKFIG*FYKLLF Trigger: GAAAAGCAACTTATAGAAGCAACCAATGAATTTGCC...GCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR CAA 90 bp | CTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGATTAATGTCCAGCTTATaGTCCGCTCTGATTCGACTG | + |
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Preference number: 5 (lower is better) Translates to: LHLVHKPFEEFVVSTFYGLMSSL*SALIRL Trigger: CAGTCGAATCAGAGCGGACAATAAGCTGGACATTAA...TCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR CAA 90 bp | TTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCGTTTGTGTATCCTTTTaGGCAAATTCATTGGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LVHKPFEEFVVSTFYGVSVCVSF*ANSLVA Trigger: AGCAACCAATGAATTTGCCAAAAAGGATACACAAAC...GCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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| CDS-3UTR CAA 90 bp | CTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTTTGTGTATCCTTTTaGGCAAATTCATTGGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LHLVHKPFEEFVVSTFYGVCVSF*ANSLVA Trigger: AGCAACCAATGAATTTGCCAAAAAGGATACACAAAC...TCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032842.13 ENSMUST00000085017.5 |
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