Pregenerated sensors for CCDC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041375Ensembl transcript IDs: ENSMUST00000041010.15, ENSMUST00000041010.16, ENSMUST00000118976.10, ENSMUST00000118976.9, ENSMUST00000145519.4, ENSMUST00000146085.3, ENSMUST00000148741.9, ENSMUST00000174270.9
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAATCCCTAGCTGCAGGTTCCTGCACACCCAGGCCTCACAGGGACTaGCTCCGAGGGTTCGACCAGACGAGTGCGGTCGGACTGGCACCA | + |
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Preference number: 1 (lower is better) Translates to: QSLAAGSCTPRPHRD*LRGFDQTSAVGLAP Trigger: TGGTGCCAGTCCGACCGCACTCGTCTGGTCGAACCCTCGGAGTCAGTCCCTGTGAGGCCTGGGTGTGCAGGAACCTGCAGCTAGGGATTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118976.9 |
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| 3UTR CCA 90 bp | GCAGGCACCAACTGCCCTTCTCTGCCACGGGGGTTGAAGGAGGTGTaGGCACAGCCACACCCTTGTGCACACAAACACACACACAAGCAG | + |
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Preference number: 1 (lower is better) Translates to: AGTNCPSLPRGLKEV*AQPHPCAHKHTHKQ Trigger: CTGCTTGTGTGTGTGTTTGTGTGCACAAGGGTGTGGCTGTGCCCACACCTCCTTCAACCCCCGTGGCAGAGAAGGGCAGTTGGTGCCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR TCA 90 bp | TTATTGGAGAGAGGCTCTGAACCAGCAAGAGCAGGCTTTGGGAACTaGGATAAGGGCAGGAAGCAGGCACCAACTGCCCTTCTCTGCCAC | + |
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Preference number: 1 (lower is better) Translates to: LLERGSEPARAGFGN*DKGRKQAPTALLCH Trigger: GTGGCAGAGAAGGGCAGTTGGTGCCTGCTTCCTGCCCTTATCTCAGTTCCCAAAGCCTGCTCTTGCTGGTTCAGAGCCTCTCTCCAATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR-3UTR GCA 90 bp | TCTGCTGGCCCCTGGGGGTCGAGGAGTCCCAGGAGTCCTCCGAGAGGGACCCAGATCCTCCTCAATCTCTaGGGGGAGGAGAGGGGATGG | + |
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Preference number: 2 (lower is better) Translates to: SAGPWGSRSPRSPPRGTQILLNL*GEERGW Trigger: CCATCCCCTCTCCTCCCCGCAGAGATTGAGGAGGAT...CTGGGTCCCTCTCGGAGGACTCCTGGGACTCCTCGACCCCCAGGGGCCAGCAGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000148741.9 |
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| 3UTR-3UTR TCA 90 bp | CTGAACCAGCAAGAGCAGGCTTTGGGAACTGAGATAAGGGCAGGAAGCAGGCACCTCTGCCACGGGGGTTaGAGGAGGTGTGGGCACAGC | + |
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Preference number: 2 (lower is better) Translates to: LNQQEQALGTEIRAGSRHLCHGG*RRCGHS Trigger: GCTGTGCCCACACCTCCTTCAACCCCCGTGGCAGAG...GTGCCTGCTTCCTGCCCTTATCTCAGTTCCCAAAGCCTGCTCTTGCTGGTTCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR-3UTR CCA 90 bp | GCTCTGAACCAGCAAGAGCAGGCTTTGGGAACTGAGATAAGGGCAGGAAGCAGGGGGTTGAAGGAGGTGTaGGCACAGCCACACCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: ALNQQEQALGTEIRAGSRGLKEV*AQPHPC Trigger: ACAAGGGTGTGGCTGTGCCCACACCTCCTTCAACCC...CCTGCTTCCTGCCCTTATCTCAGTTCCCAAAGCCTGCTCTTGCTGGTTCAGAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR TCA 72 bp | GCTGCAGGTTCCTGCACACCCAGGCCTCACAGGGACTaGCTCCGAGGGTTCGACCAGACGAGTGCGGTCGGA | + |
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Preference number: 3 (lower is better) Translates to: AAGSCTPRPHRD*LRGFDQTSAVG Trigger: TCCGACCGCACTCGTCTGGTCGAACCCTCGGAGTCAGTCCCTGTGAGGCCTGGGTGTGCAGGAACCTGCAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118976.9 |
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| 3UTR TCA 72 bp | AAGCAGGCACCAACTGCCCTTCTCTGCCACGGGGGTTaGAGGAGGTGTGGGCACAGCCACACCCTTGTGCAC | + |
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Preference number: 3 (lower is better) Translates to: KQAPTALLCHGG*RRCGHSHTLVH Trigger: GTGCACAAGGGTGTGGCTGTGCCCACACCTCCTTCAACCCCCGTGGCAGAGAAGGGCAGTTGGTGCCTGCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR GCA 72 bp | TCACAGGGACTGACTCCGAGGGTTCGACCAGACGAGTaGGGTCGGACTGGCACCACTGGGTCCTCAGCGAAT | + |
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Preference number: 3 (lower is better) Translates to: SQGLTPRVRPDE*GRTGTTGSSAN Trigger: ATTCGCTGAGGACCCAGTGGTGCCAGTCCGACCGCACTCGTCTGGTCGAACCCTCGGAGTCAGTCCCTGTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118976.9 |
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| 3UTR TCA 72 bp | AGAGGCTCTGAACCAGCAAGAGCAGGCTTTGGGAACTaGGATAAGGGCAGGAAGCAGGCACCAACTGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: RGSEPARAGFGN*DKGRKQAPTAL Trigger: AAGGGCAGTTGGTGCCTGCTTCCTGCCCTTATCTCAGTTCCCAAAGCCTGCTCTTGCTGGTTCAGAGCCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR CAA 72 bp | GAAGCAGGCACCAACTGCCCTTCTCTGCCACGGGGGTaGAAGGAGGTGTGGGCACAGCCACACCCTTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: EAGTNCPSLPRG*KEVWAQPHPCA Trigger: TGCACAAGGGTGTGGCTGTGCCCACACCTCCTTCAACCCCCGTGGCAGAGAAGGGCAGTTGGTGCCTGCTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| 3UTR CAA 72 bp | TATTGGAGAGAGGCTCTGAACCAGCAAGAGCAGGCTTaGGGAACTGAGATAAGGGCAGGAAGCAGGCACCAA | + |
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Preference number: 4 (lower is better) Translates to: YWREALNQQEQA*GTEIRAGSRHQ Trigger: TTGGTGCCTGCTTCCTGCCCTTATCTCAGTTCCCAAAGCCTGCTCTTGCTGGTTCAGAGCCTCTCTCCAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041010.15 |
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| CDS CCA 90 bp | CCCGGCGGCGGAGCAGCCGCCACCACCTTGCAGAAACGCACCCTCTaGAAGTCTGTGATCTCCGCCGTCTCCTGGCCCTCGGGGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: PGGGAAATTLQKRTL*KSVISAVSWPSGPT Trigger: GGTGGGCCCCGAGGGCCAGGAGACGGCGGAGATCACAGACTTCCAGAGGGTGCGTTTCTGCAAGGTGGTGGCGGCTGCTCCGCCGCCGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS GCA 90 bp | CTGACCTCTCCCGGCCCGTCATGGACATCGTCATGTCGCCCCCACTaGCCAGGCCAGCCCTGCGGCCCTGTCGCTCCTGTTCCAAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: LTSPGPSWTSSCRPH*PGQPCGPVAPVPSQ Trigger: CTGGCTTGGAACAGGAGCGACAGGGCCGCAGGGCTGGCCTGGGCAGTGGGGGCGACATGACGATGTCCATGACGGGCCGGGAGAGGTCAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS TCA 90 bp | GCCCTGTCGCTCCTGTTCCAAGCCAGAGCGCACCCGCTCAAAATCTaGGCCTCCCCAGTTGCGTCCATGCCGGCGGCTGCCTTCCCGGCG | + |
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Preference number: 5 (lower is better) Translates to: ALSLLFQARAHPLKI*ASPVASMPAAAFPA Trigger: CGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTGGCTTGGAACAGGAGCGACAGGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 90 bp | CCGTCATGGACATCGTCATGTCGCCCCCACTGCCCAGGCCAGCCCTaGGGCCCTGTCGCTCCTGTTCCAAGCCAGAGCGCACCCGCTCAA | + |
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Preference number: 5 (lower is better) Translates to: PSWTSSCRPHCPGQP*GPVAPVPSQSAPAQ Trigger: TTGAGCGGGTGCGCTCTGGCTTGGAACAGGAGCGACAGGGCCGCAGGGCTGGCCTGGGCAGTGGGGGCGACATGACGATGTCCATGACGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 90 bp | TCTCCTGCTTCCAGCGCAGGTACTCTGACCTCTCCCGGCCCGTCATaGACATCGTCATGTCGCCCCCACTGCCCAGGCCAGCCCTGCGGC | + |
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Preference number: 5 (lower is better) Translates to: SPASSAGTLTSPGPS*TSSCRPHCPGQPCG Trigger: GCCGCAGGGCTGGCCTGGGCAGTGGGGGCGACATGACGATGTCCATGACGGGCCGGGAGAGGTCAGAGTACCTGCGCTGGAAGCAGGAGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS TCA 90 bp | GAGCAGCCGCCACCACCTTGCAGAAACGCACCCTCTGGAAGTCTGTaGTCTCCGCCGTCTCCTGGCCCTCGGGGCCCACCTCTCCACCAG | + |
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Preference number: 5 (lower is better) Translates to: EQPPPPCRNAPSGSL*SPPSPGPRGPPLHQ Trigger: CTGGTGGAGAGGTGGGCCCCGAGGGCCAGGAGACGGCGGAGATCACAGACTTCCAGAGGGTGCGTTTCTGCAAGGTGGTGGCGGCTGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS GCA 90 bp | CCAGAGCGCACCCGCTCAAAATCTGAGCCTCCCCAGTTGCGTCCATaGCGGCGGCTGCCTTCCCGGCGATCCCTCTCAGACTCCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: PERTRSKSEPPQLRP*RRLPSRRSLSDSSR Trigger: CCTCGAGGAGTCTGAGAGGGATCGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 90 bp | CGGTCTTCTCGGCATCCCACTCCCGCCGCCACTGCCCGGTGGGCTTaGGGTGTCGCTGCAGACGTTCCTGGTCGATCTTCTCCCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: RSSRHPTPAATARWA*GVAADVPGRSSPSP Trigger: AGGAGAGGGAGAAGATCGACCAGGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCGAGAAGACCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 90 bp | CGGGAGGCCGATGAGCTGGAGCTGGGGTCTCAGAAGCCTGCTGTGTaGGTGTCTCCTCCAGGGATATGGACTGAGAGGACTCGGGGGCCG | + |
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Preference number: 5 (lower is better) Translates to: READELELGSQKPAV*VSPPGIWTERTRGP Trigger: CGGCCCCCGAGTCCTCTCAGTCCATATCCCTGGAGGAGACACCCACACAGCAGGCTTCTGAGACCCCAGCTCCAGCTCATCGGCCTCCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146085.3 |
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| CDS GCA 90 bp | GTTCCAAGCCAGAGCGCACCCGCTCAAAATCTGAGCCTCCCCAGTTaGGTCCATGCCGGCGGCTGCCTTCCCGGCGATCCCTCTCAGACT | + |
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Preference number: 5 (lower is better) Translates to: VPSQSAPAQNLSLPS*VHAGGCLPGDPSQT Trigger: AGTCTGAGAGGGATCGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTGGCTTGGAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 90 bp | TTGAACATGCCATCGGTCTTCTCGGCATCCCACTCCCGCCGCCACTaGCCGGTGGGCTTGCGGTGTCGCTGCAGACGTTCCTGGTCGATC | + |
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Preference number: 5 (lower is better) Translates to: LNMPSVFSASHSRRH*PVGLRCRCRRSWSI Trigger: GATCGACCAGGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCGAGAAGACCGATGGCATGTTCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 90 bp | GCAACTCCTGGGACCCGGCAGGCACAGGGTCCACCTGCTCACAGGTaGGCTTCCCAGCAGGCTCAGCTTCAGGCTGGTGATCAGGAACAG | + |
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Preference number: 5 (lower is better) Translates to: ATPGTRQAQGPPAHR*ASQQAQLQAGDQEQ Trigger: CTGTTCCTGATCACCAGCCTGAAGCTGAGCCTGCTGGGAAGCCCACCTGTGAGCAGGTGGACCCTGTGCCTGCCGGGTCCCAGGAGTTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS TCA 90 bp | GGGGTCTCAGAAGCCTGTGTGGGTGTCTCCTCCAGGGATATGGACTaGGAGGACTCGGGGGCCGAGGACACAGCTTCCTCTCTTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GVSEACVGVSSRDMD*EDSGAEDTASSLVS Trigger: GGAGACAAGAGAGGAAGCTGTGTCCTCGGCCCCCGAGTCCTCTCAGTCCATATCCCTGGAGGAGACACCCACACAGGCTTCTGAGACCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 90 bp | GAGCTGGGGTCTCAGAAGCCTGTGTGGGTGTCTCCTCCAGGGATATaGACTGAGAGGACTCGGGGGCCGAGGACACAGCTTCCTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: ELGSQKPVWVSPPGI*TERTRGPRTQLPLL Trigger: CAAGAGAGGAAGCTGTGTCCTCGGCCCCCGAGTCCTCTCAGTCCATATCCCTGGAGGAGACACCCACACAGGCTTCTGAGACCCCAGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 90 bp | TTCCCCCACATCTTCCTCACCATCTTCCTCGGGAGGCCGATGAGCTaGAGCTGGGGTCTCAGAAGCCTGCTGTGTGGGTGTCTCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: FPHIFLTIFLGRPMS*SWGLRSLLCGCLLQ Trigger: CTGGAGGAGACACCCACACAGCAGGCTTCTGAGACCCCAGCTCCAGCTCATCGGCCTCCCGAGGAAGATGGTGAGGAAGATGTGGGGGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146085.3 |
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| CDS TCA 90 bp | GTCTCAGAAGCCTGCTGTGTGGGTGTCTCCTCCAGGGATATGGACTaGGAGGACTCGGGGGCCGAGGACACAGCTTCCTCTCTTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: VSEACCVGVSSRDMD*EDSGAEDTASSLVS Trigger: GGAGACAAGAGAGGAAGCTGTGTCCTCGGCCCCCGAGTCCTCTCAGTCCATATCCCTGGAGGAGACACCCACACAGCAGGCTTCTGAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146085.3 |
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| CDS GCA 90 bp | AAGGCCAGGCCTCACCCGAAGAGTGGGTACCAGGTAAGTGGGCAGTaGCGGGAGAATTCAGTTCCATCTCCTCACCCCAGTCAGACACAG | + |
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Preference number: 5 (lower is better) Translates to: KARPHPKSGYQVSGQ*RENSVPSPHPSQTQ Trigger: CTGTGTCTGACTGGGGTGAGGAGATGGAACTGAATTCTCCCGGCACTGCCCACTTACCTGGTACCCACTCTTCGGGTGAGGCCTGGCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041010.16 |
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| CDS TCA 90 bp | ACCTGCTCACAGGTGGGCTTCCCAGCAGGCTCAGCTTCAGGCTGGTaGTCAGGAACAGTTGCTGCTTCCTGGTCCTTAGGACCCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: TCSQVGFPAGSASGW*SGTVAASWSLGPSS Trigger: TGAAGAGGGTCCTAAGGACCAGGAAGCAGCAACTGTTCCTGATCACCAGCCTGAAGCTGAGCCTGCTGGGAAGCCCACCTGTGAGCAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 90 bp | TTCGCAAAAGGCCAGGCCTCACCCGAAGAGTGGGTACCAGGTAAGTaGGCAGTGCCGGGAGAATTCAGTTCCATCTCCTCACCCCAGTCA | + |
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Preference number: 5 (lower is better) Translates to: FAKGQASPEEWVPGK*AVPGEFSSISSPQS Trigger: TGACTGGGGTGAGGAGATGGAACTGAATTCTCCCGGCACTGCCCACTTACCTGGTACCCACTCTTCGGGTGAGGCCTGGCCTTTTGCGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041010.16 |
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| CDS TCA 90 bp | CCACCTTGGCCTGAGGTCGGCTGTTCTTTCTCCTTCTGCGGCTGCTaGCTTCAGCTTTGTGCTGAGAAAGGAACTCTCCAAAAGTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: PPWPEVGCSFSFCGC*LQLCAEKGTLQKWE Trigger: CTCCCACTTTTGGAGAGTTCCTTTCTCAGCACAAAGCTGAAGTCAGCAGCCGCAGAAGGAGAAAGAACAGCCGACCTCAGGCCAAGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS TCA 90 bp | CGGCTGTTCTTTCTCCTTCTGCGGCTGCTGACTTCAGCTTTGTGCTaGGAAAGGAACTCTCCAAAAGTGGGAGGCTTAGGTGGTCTTGCC | + |
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Preference number: 5 (lower is better) Translates to: RLFFLLLRLLTSALC*ERNSPKVGGLGGLA Trigger: GGCAAGACCACCTAAGCCTCCCACTTTTGGAGAGTTCCTTTCTCAGCACAAAGCTGAAGTCAGCAGCCGCAGAAGGAGAAAGAACAGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS GCA 90 bp | GTGCTGAGAAAGGAACTCTCCAAAAGTGGGAGGCTTAGGTGGTCTTaGCCAAGCTTGGTCATCATAGCGGTGGGACAGTTCATGGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: VLRKELSKSGRLRWS*PSLVIIAVGQFMGR Trigger: CCTACCCATGAACTGTCCCACCGCTATGATGACCAAGCTTGGGCAAGACCACCTAAGCCTCCCACTTTTGGAGAGTTCCTTTCTCAGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS CCA 90 bp | AGCTTTGTGCTGAGAAAGGAACTCTCCAAAAGTGGGAGGCTTAGGTaGTCTTGCCCAAGCTTGGTCATCATAGCGGTGGGACAGTTCATG | + |
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Preference number: 5 (lower is better) Translates to: SFVLRKELSKSGRLR*SCPSLVIIAVGQFM Trigger: CATGAACTGTCCCACCGCTATGATGACCAAGCTTGGGCAAGACCACCTAAGCCTCCCACTTTTGGAGAGTTCCTTTCTCAGCACAAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS GCA 72 bp | CCATCGGTCTTCTCGGCATCCCACTCCCGCCGCCACTaGCCGGTGGGCTTGCGGTGTCGCTGCAGACGTTCC | + |
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Preference number: 6 (lower is better) Translates to: PSVFSASHSRRH*PVGLRCRCRRS Trigger: GGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCGAGAAGACCGATGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CAA 72 bp | CGGGCAGCCCCCGGCGGCGGAGCAGCCGCCACCACCTaGCAGAAACGCACCCTCTGGAAGTCTGTGATCTCC | + |
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Preference number: 6 (lower is better) Translates to: RAAPGGGAAATT*QKRTLWKSVIS Trigger: GGAGATCACAGACTTCCAGAGGGTGCGTTTCTGCAAGGTGGTGGCGGCTGCTCCGCCGCCGGGGGCTGCCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS GCA 72 bp | CAGAGCGCACCCGCTCAAAATCTGAGCCTCCCCAGTTaGGTCCATGCCGGCGGCTGCCTTCCCGGCGATCCC | + |
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Preference number: 6 (lower is better) Translates to: QSAPAQNLSLPS*VHAGGCLPGDP Trigger: GGGATCGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 72 bp | TCCCGCCGCCACTGCCCGGTGGGCTTGCGGTGTCGCTaGAGACGTTCCTGGTCGATCTTCTCCCTCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SRRHCPVGLRCR*RRSWSIFSLSC Trigger: GCAGGAGAGGGAGAAGATCGACCAGGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 72 bp | CGGCATCCCACTCCCGCCGCCACTGCCCGGTGGGCTTaGGGTGTCGCTGCAGACGTTCCTGGTCGATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RHPTPAATARWA*GVAADVPGRSS Trigger: AGAAGATCGACCAGGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CAA 72 bp | CCAGAGCGCACCCGCTCAAAATCTGAGCCTCCCCAGTaGCGTCCATGCCGGCGGCTGCCTTCCCGGCGATCC | + |
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Preference number: 6 (lower is better) Translates to: PERTRSKSEPPQ*RPCRRLPSRRS Trigger: GGATCGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CAA 72 bp | TCGGCATCCCACTCCCGCCGCCACTGCCCGGTGGGCTaGCGGTGTCGCTGCAGACGTTCCTGGTCGATCTTC | + |
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Preference number: 6 (lower is better) Translates to: SASHSRRHCPVG*RCRCRRSWSIF Trigger: GAAGATCGACCAGGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CAA 90 bp | TCGGTCTTCTCGGCATCCCACTCCCGCCGCCACTGCCCGGTGGGCTaGCGGTGTCGCTGCAGACGTTCCTGGTCGATCTTCTCCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: SVFSASHSRRHCPVG*RCRCRRSWSIFSLS Trigger: GGAGAGGGAGAAGATCGACCAGGAACGTCTGCAGCGACACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCGAGAAGACCGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 72 bp | AATCTGAGCCTCCCCAGTTGCGTCCATGCCGGCGGCTaGCTTCCCGGCGATCCCTCTCAGACTCCTCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: NLSLPSCVHAGG*LPGDPSQTPRG Trigger: CCCTCGAGGAGTCTGAGAGGGATCGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | TCCAGCGCAGGTACTCTGACCTCTCCCGGCCCGTCATaGACATCGTCATGTCGCCCCCACTGCCCAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: SSAGTLTSPGPS*TSSCRPHCPGQ Trigger: CTGGCCTGGGCAGTGGGGGCGACATGACGATGTCCATGACGGGCCGGGAGAGGTCAGAGTACCTGCGCTGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | AAGCTGGGCCCGCTCTCCAAGGAGGCAAGGGGTGGCTaGTCACCTCCCCAGTCAGACACAGGCTGGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: KLGPLSKEARGG*SPPQSDTGWWS Trigger: GGACCACCAGCCTGTGTCTGACTGGGGAGGTGACCAGCCACCCCTTGCCTCCTTGGAGAGCGGGCCCAGCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS CCA 72 bp | TGCCAAGCTGGGCCCGCTCTCCAAGGAGGCAAGGGGTaGCTGGTCACCTCCCCAGTCAGACACAGGCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: CQAGPALQGGKG*LVTSPVRHRLV Trigger: CACCAGCCTGTGTCTGACTGGGGAGGTGACCAGCCACCCCTTGCCTCCTTGGAGAGCGGGCCCAGCTTGGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS TCA 72 bp | CCACCACCTTGCAGAAACGCACCCTCTGGAAGTCTGTaGTCTCCGCCGTCTCCTGGCCCTCGGGGCCCACCT | + |
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Preference number: 6 (lower is better) Translates to: PPPCRNAPSGSL*SPPSPGPRGPP Trigger: AGGTGGGCCCCGAGGGCCAGGAGACGGCGGAGATCACAGACTTCCAGAGGGTGCGTTTCTGCAAGGTGGTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS GCA 72 bp | AGCAACTCCTGGGACCCGGCAGGCACAGGGTCCACCTaGTCACAGGTGGGCTTCCCAGCAGGCTCAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SNSWDPAGTGST*SQVGFPAGSAS Trigger: TGAAGCTGAGCCTGCTGGGAAGCCCACCTGTGAGCAGGTGGACCCTGTGCCTGCCGGGTCCCAGGAGTTGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | GGAGCAGCCGCCACCACCTTGCAGAAACGCACCCTCTaGAAGTCTGTGATCTCCGCCGTCTCCTGGCCCTCG | + |
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Preference number: 6 (lower is better) Translates to: GAAATTLQKRTL*KSVISAVSWPS Trigger: CGAGGGCCAGGAGACGGCGGAGATCACAGACTTCCAGAGGGTGCGTTTCTGCAAGGTGGTGGCGGCTGCTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS CAA 90 bp | TGTTCCAAGCCAGAGCGCACCCGCTCAAAATCTGAGCCTCCCCAGTaGCGTCCATGCCGGCGGCTGCCTTCCCGGCGATCCCTCTCAGAC | + |
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Preference number: 6 (lower is better) Translates to: CSKPERTRSKSEPPQ*RPCRRLPSRRSLSD Trigger: GTCTGAGAGGGATCGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTGGCTTGGAACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS GCA 72 bp | CTCAGGCCCCTCTTCTTCAGAAGACTTCGGGGTTCCTaGCAAGCTGGGCCCGCTCTCCAAGGAGGCAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: LRPLFFRRLRGS*QAGPALQGGKG Trigger: CCCCTTGCCTCCTTGGAGAGCGGGCCCAGCTTGGCAGGAACCCCGAAGTCTTCTGAAGAAGAGGGGCCTGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS CAA 72 bp | CGACGTCGGGGATCATCCAGGAAGTTGCGTACTGGGTaGGGCTCCAGCACCCCTTCCCGCTGGTTGCGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RRRGSSRKLRTG*GSSTPSRWLRS Trigger: TGAGCGCAACCAGCGGGAAGGGGTGCTGGAGCCCAACCCAGTACGCAACTTCCTGGATGATCCCCGACGTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | GACGTCGGGGATCATCCAGGAAGTTGCGTACTGGGTTaGGCTCCAGCACCCCTTCCCGCTGGTTGCGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: DVGDHPGSCVLG*APAPLPAGCAH Trigger: ATGAGCGCAACCAGCGGGAAGGGGTGCTGGAGCCCAACCCAGTACGCAACTTCCTGGATGATCCCCGACGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | TCTCAGAAGCCTGTGTGGGTGTCTCCTCCAGGGATATaGACTGAGAGGACTCGGGGGCCGAGGACACAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SQKPVWVSPPGI*TERTRGPRTQL Trigger: AAGCTGTGTCCTCGGCCCCCGAGTCCTCTCAGTCCATATCCCTGGAGGAGACACCCACACAGGCTTCTGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | ATCTTCCTCACCATCTTCCTCGGGAGGCCGATGAGCTaGAGCTGGGGTCTCAGAAGCCTGTGTGGGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: IFLTIFLGRPMS*SWGLRSLCGCL Trigger: GAGACACCCACACAGGCTTCTGAGACCCCAGCTCCAGCTCATCGGCCTCCCGAGGAAGATGGTGAGGAAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 |
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| CDS CCA 72 bp | GGCCAGGCCTCACCCGAAGAGTGGGTACCAGGTAAGTaGGCAGTGCCGGGAGAATTCAGTTCCATCTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: GQASPEEWVPGK*AVPGEFSSISS Trigger: TGAGGAGATGGAACTGAATTCTCCCGGCACTGCCCACTTACCTGGTACCCACTCTTCGGGTGAGGCCTGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041010.16 |
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| CDS CCA 72 bp | GGGGCCCACCTCTCCACCAGCTTCATGCATCCCACCTaGAGATGCCTCAGGCCCCTCTTCTTCAGAAGACTT | + |
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Preference number: 6 (lower is better) Translates to: GAHLSTSFMHPT*RCLRPLFFRRL Trigger: AAGTCTTCTGAAGAAGAGGGGCCTGAGGCATCTCCAGGTGGGATGCATGAAGCTGGTGGAGAGGTGGGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118976.10 |
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| CDS CCA 72 bp | ATCTTCCTCACCATCTTCCTCGGGAGGCCGATGAGCTaGAGCTGGGGTCTCAGAAGCCTGCTGTGTGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: IFLTIFLGRPMS*SWGLRSLLCGC Trigger: ACACCCACACAGCAGGCTTCTGAGACCCCAGCTCCAGCTCATCGGCCTCCCGAGGAAGATGGTGAGGAAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146085.3 |
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| CDS CAA 90 bp | ATATGGACTGAGAGGACTCGGGGGCCGAGGACACAGCTTCCTCTCTaGTCTCCCAGCGATTATCGTGGTCACTATAGGCACGAGGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: IWTERTRGPRTQLPL*SPSDYRGHYRHEGP Trigger: TGGCCCCTCGTGCCTATAGTGACCACGATAATCGCTGGGAGACAAGAGAGGAAGCTGTGTCCTCGGCCCCCGAGTCCTCTCAGTCCATAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS CCA 72 bp | GTCATCATAGCGGTGGGACAGTTCATGGGTAGGGGCTaGGCCATCCTTGAACATGCCATCGGTCTTCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: VIIAVGQFMGRG*AILEHAIGLLG Trigger: GCCGAGAAGACCGATGGCATGTTCAAGGATGGCCCAGCCCCTACCCATGAACTGTCCCACCGCTATGATGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS CAA 72 bp | GAGAGGACTCGGGGGCCGAGGACACAGCTTCCTCTCTaGTCTCCCAGCGATTATCGTGGTCACTATAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: ERTRGPRTQLPL*SPSDYRGHYRH Trigger: GTGCCTATAGTGACCACGATAATCGCTGGGAGACAAGAGAGGAAGCTGTGTCCTCGGCCCCCGAGTCCTCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS CAA 90 bp | AAGGAACTCTCCAAAAGTGGGAGGCTTAGGTGGTCTTGCCCAAGCTaGGTCATCATAGCGGTGGGACAGTTCATGGGTAGGGGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: KELSKSGRLRWSCPS*VIIAVGQFMGRGWA Trigger: GGCCCAGCCCCTACCCATGAACTGTCCCACCGCTATGATGACCAAGCTTGGGCAAGACCACCTAAGCCTCCCACTTTTGGAGAGTTCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS TCA 72 bp | TTTTCCGATCCTCCTCAATCTCCTGGTAGCGCCGGATaGGGGCCTCATTCTTCCGACGAAGAGCCTCGATCC | + |
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Preference number: 6 (lower is better) Translates to: FSDPPQSPGSAG*GPHSSDEEPRS Trigger: GGATCGAGGCTCTTCGTCGGAAGAATGAGGCCCTCATCCGGCGCTACCAGGAGATTGAGGAGGATCGGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000145519.4 ENSMUST00000174270.9 |
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| CDS CAA 72 bp | TCCAAAAGTGGGAGGCTTAGGTGGTCTTGCCCAAGCTaGGTCATCATAGCGGTGGGACAGTTCATGGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: SKSGRLRWSCPS*VIIAVGQFMGR Trigger: CCTACCCATGAACTGTCCCACCGCTATGATGACCAAGCTTGGGCAAGACCACCTAAGCCTCCCACTTTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS CCA 72 bp | CTGAGAAAGGAACTCTCCAAAAGTGGGAGGCTTAGGTaGTCTTGCCCAAGCTTGGTCATCATAGCGGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: LRKELSKSGRLR*SCPSLVIIAVG Trigger: TCCCACCGCTATGATGACCAAGCTTGGGCAAGACCACCTAAGCCTCCCACTTTTGGAGAGTTCCTTTCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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| CDS TCA 72 bp | TTTCTCCTTCTGCGGCTGCTGACTTCAGCTTTGTGCTaGGAAAGGAACTCTCCAAAAGTGGGAGGCTTAGGT | + |
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Preference number: 6 (lower is better) Translates to: FLLLRLLTSALC*ERNSPKVGGLG Trigger: ACCTAAGCCTCCCACTTTTGGAGAGTTCCTTTCTCAGCACAAAGCTGAAGTCAGCAGCCGCAGAAGGAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041010.16 ENSMUST00000118976.10 ENSMUST00000146085.3 |
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