RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC88B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047810

Ensembl transcript IDs: ENSMUST00000113440.2, ENSMUST00000236028.2, ENSMUST00000238099.2

Found 402 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCAGCCGTCTTCAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTaGGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGG +
Preference number: 1 (lower is better)
Translates to: PAVFSWGVSQGSSPW*GLYFRARALARSSR
Trigger: CCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTGAAGACGGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR GCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCCCCCGGCTCTTGGGCTaGCTGGGAGCCCCACTGACC +
Preference number: 2 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSPRLLG*LGAPLT
Trigger: GGTCAGTGGGGCTCCCAGGCAGCCCAAGAGCCGGGG...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
67% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR CAA 90 bp CTTGCCAGCCGTCTTCAGCTGGGGAGTCTCCCAGGGATCGTCTCCTaGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTC +
Preference number: 2 (lower is better)
Translates to: LASRLQLGSLPGIVS*VRAVLQSKSPGQEL
Trigger: GAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTGAAGACGGCTGGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR TCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCAGGCTGTGGGGGACCTaGGAGCCCAGGCCTCTTTGT +
Preference number: 2 (lower is better)
Translates to: RARALARSSRFGPIISPVRLWGT*EPRPLC
Trigger: ACAAAGAGGCCTGGGCTCTCAGGTCCCCCACAGCCT...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR CCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGGTCCCCCGGCTCTTaGGCTGCCTGGGAGCCCCAC +
Preference number: 2 (lower is better)
Translates to: EWALAPHLELAEGFLAHSWSPGS*AAWEPH
Trigger: GTGGGGCTCCCAGGCAGCCCAAGAGCCGGGGGACCA...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR TCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCAGGCTGTGGGGGACCTaGGAGCCCAGGCCTCTTTGT +
Preference number: 2 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVRLWGT*EPRPLC
Trigger: ACAAAGAGGCCTGGGCTCTCAGGTCCCCCACAGCCT...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR GCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCCCCGGCTCTTGGGCTaGCTGGGAGCCCCACTGACC +
Preference number: 2 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMPRLLG*LGAPLT
Trigger: GGTCAGTGGGGCTCCCAGGCAGCCCAAGAGCCGGGG...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR GCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTATTTCTTGCCCACTCTTaGCAGCCGTCTTCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: SQTMLRYQPRPVPREWALFLAHS*QPSSAG
Trigger: CCCAGCTGAAGACGGCTGGCAAGAGTGGGCAAGAAA...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR CCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTTGGTCCCCCGGCTCTTaGGCTGCCTGGGAGCCCCAC +
Preference number: 2 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNAWSPGS*AAWEPH
Trigger: GTGGGGCTCCCAGGCAGCCCAAGAGCCGGGGGACCA...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR-3UTR GCA 90 bp TTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCTTTCTTGCCCACTCTTaGCAGCCGTCTTCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: FSFILLSLVSQTMLRYQPFLAHS*QPSSAG
Trigger: CCCAGCTGAAGACGGCTGGCAAGAGTGGGCAAGAAA...GGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR CCA 72 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTaGACCAATCATCTCCCCTGTCCACAGCCTCGTCCC +
Preference number: 3 (lower is better)
Translates to: LQSKSPGQELPV*TNHLPCPQPRP
Trigger: GGGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR TCA 72 bp TTCAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTaGGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGG +
Preference number: 3 (lower is better)
Translates to: FSWGVSQGSSPW*GLYFRARALAR
Trigger: CCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR CCA 72 bp CTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTaGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCC +
Preference number: 3 (lower is better)
Translates to: LLGEGCTSEQEP*PGAPGLDQSSP
Trigger: GGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR CCA 72 bp ATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATaGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGT +
Preference number: 3 (lower is better)
Translates to: MLRYQPRPVPRE*ALAPHLELAEG
Trigger: ACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCCGGGCCTGGGCCTCTaGCTCCTGATGGGCCTCCGC +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLPGLGL*LLMGLR
Trigger: GCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCCGGGCCTGGGCCTCTaGCTCCTGATGGGCCTCCGC +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVPGLGL*LLMGLR
Trigger: GCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGG...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCTCCTGTGCACGGCCCTaGAGGCTCCCCAGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSSCARP*RLPSCP
Trigger: GGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGA...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCTGCTCATGCCGGCCCTaGAGCTCACGGTGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSCSCRP*SSRWAS
Trigger: GCTGGCCCACCGTGAGCTTCAGGGCCGGCATGAGCA...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCGGCCCGCTCCCGCAGTaGCTCTGCCTCCTCGCGGTA +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPGPLPQ*LCLLAV
Trigger: TACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCC...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCCGCCGCAGTTCTTCCTaGAGGCGTGGCAGGCGGCCG +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSRRSSS*RRGRRP
Trigger: CGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCG...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCACGCAGACGGGCCTaGTCCCGGGCCTGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQSRRRA*SRAWAS
Trigger: AGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGA...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGGGTCTCCCCCGGGGTTaGCTCCTCCCTGGACCAGGC +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLGLPRG*LLPGPG
Trigger: GCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACC...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGCTTTGCTGTGGGTACTaGGTGCCCCCAGGGGGCCGG +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPLCCGY*VPPGGR
Trigger: CCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCTCGGCAGCCTCAACTTaGGCCCGCAGCCTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPSAAST*ARSLGP
Trigger: CGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGA...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTCGGCAGCCTCAACTTaGGCCCGCAGCCTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPSAAST*ARSLGP
Trigger: CGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGA...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGTCACGCAGACGGGCCTaGTCCCGGGCCTGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLESRRRA*SRAWAS
Trigger: AGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGA...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCCTGTGCACGGCCCTaGAGGCTCCCCAGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: NAQISAQACPQGMGLSSPSCARP*RLPSCP
Trigger: GGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGA...TGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTGCTGTGGGTACTGGGTaGCCCCAGGGGGCCGGGTCT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAAVGTG*PQGAGS
Trigger: AGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGC...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGGCTGTGGGTACTGGGTaGCCCCAGGGGGCCGGGTCT +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLEAVGTG*PQGAGS
Trigger: AGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGC...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCTTCTTCCTGCAGGCGTaGCAGGCGGCCGGCCCGCTC +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPFFLQA*QAAGPL
Trigger: GAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAA...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCGGTCTCCCCCGGGGTTaGCTCCTCCCTGGACCAGGC +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPGLPRG*LLPGPG
Trigger: GCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACC...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCCTTGAGCCCGCAGCCTaGGCCCGTCACGTTCCCACT +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSLEPAA*ARHVPT
Trigger: AGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAG...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTCCCCGCGTTCACCTTaGAGCTCCCCTCGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVSPRSP*SSPRSR
Trigger: CCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGA...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCCCCGCGTTCACCTTaGAGCTCCCCTCGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQSPRSP*SSPRSR
Trigger: CCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGA...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCTTTGCTGTGGGTACTaGGTGCCCCCAGGGGGCCGG +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVLCCGY*VPPGGR
Trigger: CCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTGGGCTTTGGGGGCTGTaGTGGAGGGCCGAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCGLWGL*WRAEGV
Trigger: AACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCC...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCTCCCGCAGTGCCTCTaGCTCCTCGCGGTAGAGCTC +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLLPQCL*LLAVEL
Trigger: GAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTGGCTCTCCAGAGCCTaGACCTGCTGCTCGGCAGCC +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVWLSRA*TCCSAA
Trigger: GGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCA...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGTGCTGCAGCTGCCCCTaGAGAGCCGCCTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLCCSCP*RAAFSA
Trigger: GGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCA...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGCTGCAGCTGCCCCTaGAGAGCCGCCTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPCCSCP*RAAFSA
Trigger: GGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCA...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTCCAGGTGCTGCAGCTaGCCCTGCAGAGCCGCCTTC +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVSRCCS*PCRAAF
Trigger: GAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGA...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCAGCAGAGCCTGCTGCTaGCCTCGGGTCTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWASRACC*PRVSSW
Trigger: CCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCT...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCGAAGCAGAGCCTGCTaGTGCCCTCGGGTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLRSRAC*CPRVSS
Trigger: GGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTCCCGAAGCAGAGCCTaGTGCTGCCCTCGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWASRSRA*CCPRVS
Trigger: GGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGA...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCTCCTCCAGGCCGCGCTaGCGATGTCCATCCTGCATC +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSSSRPR*RCPSCI
Trigger: GATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGA...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAACCAAGCTTTCCGTGCTaGCAGCCCCATCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQPSFPC*QPHRPP
Trigger: TGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGG...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCACCCCCAAGCTTTCCGTaGTGCCAGCCCCATCGGCCC +
Preference number: 4 (lower is better)
Translates to: NAQISAQACPQGMGLSSPPPSFP*CQPHRP
Trigger: GGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGG...TGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCCGCCGCTGCCCACCTaGCAGGGTCTCATCTCCCAA +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVPPLPT*QGLISQ
Trigger: TTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGG...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCCTGAGTCTCCGCCGCTaGCCACCTGCCAGGGTCTCA +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWALSLRR*PPARVS
Trigger: TGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAG...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCAGCCAGCTCGCTCTaGACGTCAAGGCTGAGGCCC +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCPASSL*TSRLRP
Trigger: GGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGG...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGAGGGGAGCCTGGGGGTaGCTCCAGACTCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPRGAWG*LQTPLK
Trigger: CTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCT...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTTCCCGGCTCAGGGCCTaGACCTCGGCTAACAGCTGC +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCSRLRA*TSANSC
Trigger: GCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGA...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCGTGTTCACACTGCACTaGGGCCCCCAGCAACAGCCG +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPVFTLH*GPQQQP
Trigger: CGGCTGTTGCTGGGGGCCTCAGTGCAGTGTGAACAC...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR TCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCTCATGCAGCCTGGCTaGGCGCTCTCGGGCAACCTC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPLMQPG*ALSGNL
Trigger: GAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAG...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCGTGCTACCTCATCTCTaGGGGCCTGCTCCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSVLPHL*GPAPLG
Trigger: TCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCAC...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTGCAGGGCTCGAGCCTTaGGCTCCATCAGTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCAGLEP*APSVPP
Trigger: AGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGC...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCTGCTCATGCCGGCCCTaGAGCTCACGGTGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPACSCRP*SSRWAS
Trigger: GCTGGCCCACCGTGAGCTTCAGGGCCGGCATGAGCA...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGACTGCCTTCGCTCCCTaGCTGCTGCTGCTAGTGCCT +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPTAFAP*LLLLVP
Trigger: AGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGT...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGTGGCTCTCCAGAGCCTaGACCTGCTGCTCGGCAGCC +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLEWLSRA*TCCSAA
Trigger: GGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCA...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTAGCAGAGCCTGCTGCTaGCCTCGGGTCTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRASRACC*PRVSSW
Trigger: CCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCT...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCGAAGCAGAGCCTGCTaGTGCCCTCGGGTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPRSRAC*CPRVSS
Trigger: GGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCG...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTCCCGAAGCAGAGCCTaGTGCTGCCCTCGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPSRSRA*CCPRVS
Trigger: GGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGA...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCCCTCCTCCTGCGCGCTaGGAAGCTGGGTCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSPPPAR*EAGSEA
Trigger: AGCTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGG...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTACCCCCAAGCTTTCCGTaGTGCCAGCCCCATCGGCCC +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALPPSFP*CQPHRP
Trigger: GGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGG...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCGGACCCTGTCCCATCTaGCTCCCTGCCCTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: PDNAQISAQACPQGMGLSGPCPI*LPALRE
Trigger: CTCCCTGAGGGCAGGGAGGCAGATGGGACAGGGTCC...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCCGCCGCTGCCCACCTaGCAGGGTCTCATCTCCCAA +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLEPPLPT*QGLISQ
Trigger: TTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGG...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCCCTGCACCTCGGCCTaGGAGTCCAGCAGTTGCTCA +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVPCTSA*ESSSCS
Trigger: TGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGG...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCAGGGGAGCCTGGGGGTaGCTCCAGACTCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWARGAWG*LQTPLK
Trigger: CTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCT...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCACTTGAGCCCGCAGCCTaGGCCCGTCACGTTCCCACT +
Preference number: 4 (lower is better)
Translates to: NAQISAQACPQGMGLSSPLEPAA*ARHVPT
Trigger: AGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAG...TGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTCCCGGCTCAGGGCCTaGACCTCGGCTAACAGCTGC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPSRLRA*TSANSC
Trigger: GCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGA...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCAAGCAGAGAGAGCTCTaGACGCGGCGCATGGGTGCT +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSKQREL*TRRMGA
Trigger: AGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTT...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCGACCATCACGGCCCCTaGCCATTCGAAGTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPDHHGP*PFEVLL
Trigger: GAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTC...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR TCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGAAGACCTCTGCAGCTTaGAGCTTCTCGCGACAGCGC +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPKTSAA*SFSRQR
Trigger: GCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTT...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR TCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCTCAGCTTCCTCCAGATaGCAGCGGACCTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSSASSR*QRTWLS
Trigger: GGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGA...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGGGGTACTGGCGCAGCTaGATCAGCTCCTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLEGYWRS*ISSSSS
Trigger: GCTGGAGGAGGAGCTGATTCAGCTGCGCCAGTACCC...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTCCCAGCCAGTCCCAGTaGCCAGGTGGCCAGACTCCC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSPSQSQ*PGGQTP
Trigger: GGGAGTCTGGCCACCTGGGCACTGGGACTGGCTGGG...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATGCAGAGCCAGATGGTaGGAGACACCCTCCGCAGAC +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQCRARW*ETPSAD
Trigger: GTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCA...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTCTCCTCCACCTCCTaGCTCAGGCGTCTCAGCTGG +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPFSSTS*LRRLSW
Trigger: CCAGCTGAGACGCCTGAGGCAGGAGGTGGAGGAGAA...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCTCCTCCAGCAGAGGGTaGTGGCTGCCAAGCTGTGCC +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPSSSRG*WLPSCA
Trigger: GGCACAGCTTGGCAGCCAGCACCCTCTGCTGGAGGA...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCTGGAGTTCTCCCTCTaGTCCTCCAGCAGAGGGTGC +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLLEFSL*SSSRGC
Trigger: GCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTCCTCCGCCTCTGTTCTaGGAGCTTGGGCCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAPPPLF*ELGPAP
Trigger: AGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGG...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCCTCCGCCTCTGTTCTaGGAGCTTGGGCCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPPPPLF*ELGPAP
Trigger: AGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGG...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTCCGTCACGTTCCCACTaGCTTCGCTCCCTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAPSRSH*LRSLPA
Trigger: AGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGG...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCCTGGTAGACGCTGCCTaGAGCTCAGCTTCCAGACGC +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSLVDAA*SSASRR
Trigger: GCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAG...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTGCCGTCGCTGCAGCTaGACCAAGGCCTCATGGTCC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPCRRCS*TKASWS
Trigger: GGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCA...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTTGCCGTCGCTGCAGCTaGACCAAGGCCTCATGGTCC +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRACRRCS*TKASWS
Trigger: GGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCA...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCGCACTCAGGTCCAACTaGTGGTTGGACTCACGCAGC +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSALRSN*WLDSRS
Trigger: GCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGC...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGACCTCGGCTAACAGCTaGCTGTTCTCCTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPTSANS*LFSSSC
Trigger: GCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGT...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGGACCCTGTCCCATCTaGCTCCCTGCCCTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALGPCPI*LPALRE
Trigger: CTCCCTGAGGGCAGGGAGGCAGATGGGACAGGGTCC...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGCCACACCAGATCCTTTaGTGTGGGTACTGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPPHQIL*CGYWVP
Trigger: GGGCACCCAGTACCCACAGCAAAGGATCTGGTGTGG...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCGTCCCAGTGCCCAGGTaGCCAGACTCCCACTCAGAA +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVVPVPR*PDSHSE
Trigger: TTCTGAGTGGGAGTCTGGCCACCTGGGCACTGGGAC...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCGGTTGGGTCACCTCCTaGATTGCACCAGCCAGCTCG +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSGWVTS*IAPASS
Trigger: CGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACC...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTTCTGGCAGCAGCAAGTaGGCTGGCTCCCGCTCTAGC +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRASGSSK*AGSRSS
Trigger: GCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGA...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCGGGTCTCATGCAGCCTaGCTGAGCGCTCTCGGGCAA +
Preference number: 4 (lower is better)
Translates to: PDNAQISAQACPQGMGLSGSHAA*LSALGQ
Trigger: TTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCC...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCGCACAGGTGGCTGCCTaGAGTTCTCCCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWAAQVAA*SSPSAP
Trigger: AGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGC...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTCGATCCAGGGCCTTCTaGTCCTTCAGAGGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRARSRAF*SFRGSR
Trigger: CCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCG...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCGGTCCAACTGCTGGTTaGACTCACGCAGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWAGPTAG*THAAAG
Trigger: GCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACC...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAAAAGCAGAGAGAGCTCTaGACGCGGCGCATGGGTGCT +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQKQREL*TRRMGA
Trigger: AGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTT...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
3UTR CAA 72 bp ACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTaGGACCAATCATCTCCCCTGTCCACAGCCTCGTCC +
Preference number: 4 (lower is better)
Translates to: TSEQEPWPGAPG*DQSSPLSTASS
Trigger: GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGGTCCACTGCCTCTTCTaGGAAGGGGTCACACCCCAT +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLVHCLF*EGVTPH
Trigger: ATGGGGTGTGACCCCTTCTCAGAAGAGGCAGTGGAC...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR TCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTCTCATGCAGCCTGGCTaGGCGCTCTCGGGCAACCTC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSLMQPG*ALSGNL
Trigger: GAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAG...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTGGGCTTTGGGGGCTGTaGTGGAGGGCCGAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSGLWGL*WRAEGV
Trigger: AACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCC...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCGCAGGGCTCGAGCCTTaGGCTCCATCAGTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAAGLEP*APSVPP
Trigger: AGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGC...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGGGTACTGGCGCAGCTaGATCAGCTCCTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALGYWRS*ISSSSS
Trigger: GCTGGAGGAGGAGCTGATTCAGCTGCGCCAGTACCC...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCTCGCATATTGGCCTTaGGATCTCGGTGCCGCACCA +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLLAYWP*DLGAAP
Trigger: TGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGTCCCTCACCTCATCTTaGAGTGAGGGTGCTGCTCCG +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLSLTSS*SEGAAP
Trigger: CGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGA...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCCCGTCACGTTCCCACTaGCTTCGCTCCCTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAPSRSH*LRSLPA
Trigger: AGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGG...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCCCTCCTCCTGCGCGCTaGGAAGCTGGGTCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAPPPAR*EAGSEA
Trigger: AGCTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGG...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTGCCAGCCAGCTaGCCTTCTTGGTACGGGGTA +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPCLPAS*PSWYGV
Trigger: TACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACA...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTCTGAGTCTCCGCCGCTaGCCACCTGCCAGGGTCTCA +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSLSLRR*PPARVS
Trigger: TGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAG...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGCCACACCAGATCCTTTaGTGTGGGTACTGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLPHQIL*CGYWVP
Trigger: GGGCACCCAGTACCCACAGCAAAGGATCTGGTGTGG...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTGCTCCCGCGCCAGCCTaGACATCATCCCTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSAPAPA*TSSLSG
Trigger: GCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGC...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCGCTGGGCCTTGGCATTaGTCAGCTGCAGAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVAGPWH*SAAEPD
Trigger: ATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGC...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTACGATCCAGGGCCTTCTaGTCCTTCAGAGGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALRSRAF*SFRGSR
Trigger: CCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCG...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTGAGGGCCTGCTCCTCTaGGATAGCACTGACCAGGGT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAEGLLL*DSTDQG
Trigger: ACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTC...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGGAGGGCCTGCTCCTCTaGGATAGCACTGACCAGGGT +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLEEGLLL*DSTDQG
Trigger: ACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTC...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTTGCACCAAGGCCTCATaGTCCCGAAGCAGAGCCTGC +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRACTKAS*SRSRAC
Trigger: GCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCA...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCCGCTCCTCCTCCAGCTaGCCCTTGAAGACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPARSSSS*PLKTSA
Trigger: TGCAGAGGTCTTCAAGGGTCAGCTGGAGGAGGAGCG...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR TCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTGCCAAGCTGTGCCTaGAGCATCTGTAGTTGGCCT +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCLPSCA*SICSWP
Trigger: AGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAG...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTGTGAGTCGGGTGCCTaGGAACACTTGGGTGACCTT +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLCESGA*EHLGDL
Trigger: AAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACA...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCGTCTGCTGTGGTTTCTaGGGGCCCAGTTTACTCTCC +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVVCCGF*GPSLLS
Trigger: GGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGAC...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp GTCTCCTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGATCAGGCACCCCTTCTaGTGTCTGCTGTGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: VSLVRAVLQSKSPGQELPIRHPF*CLLWFL
Trigger: CAGAAACCACAGCAGACATCAGAAGGGGTGCCTGAT...CGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAGGAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCTCAGCTTCCTCCAGATaGCAGCGGACCTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPASASSR*QRTWLS
Trigger: GGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGA...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGTTCGCTCCACTTCGATaGGCCGTCCATTCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLFAPLR*AVHSGS
Trigger: AGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAA...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCCTCGCATATTGGCCTTaGGATCTCGGTGCCGCACCA +
Preference number: 4 (lower is better)
Translates to: PDNAQISAQACPQGMGLSLAYWP*DLGAAP
Trigger: TGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAG...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCTCTCGTGCTCATTCTaGAGTCTCCGCAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPLSCSF*SLRSSS
Trigger: GGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTCTCGTGCTCATTCTaGAGTCTCCGCAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLELSCSF*SLRSSS
Trigger: GGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTCCTCCAGCAGAGGGTaGTGGCTGCCAAGCTGTGCC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSSSSRG*WLPSCA
Trigger: GGCACAGCTTGGCAGCCAGCACCCTCTGCTGGAGGA...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTACTGGAGTTCTCCCTCTaGTCCTCCAGCAGAGGGTGC +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALLEFSL*SSSRGC
Trigger: GCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAG...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGTCAGCTTCCAGACGCTaGTCCAGATGCCGGTACCTC +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLESASRR*SRCRYL
Trigger: GAGGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGA...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCCTGGTAGACGCTGCCTaGAGCTCAGCTTCCAGACGC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPALVDAA*SSASRR
Trigger: GCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAG...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCGTGGGCCAGCTCCAATaGTCGCATATTGGCCTTGAG +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWAVGQLQ*SHIGLE
Trigger: CTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCAC...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTCCTCCAGGCCGCGCTaGCGATGTCCATCCTGCATC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSSSRPR*RCPSCI
Trigger: GATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGA...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCCGCTGTCTGAACCGTTaGCTTGGGGTGTCCCCTGGA +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPARCLNR*LGVSPG
Trigger: TCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCG...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCGCACAGGTGGCTGCCTaGAGTTCTCCCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAAQVAA*SSPSAP
Trigger: AGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGC...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTCCTGTTAGGCACAGGTaGCTGCCTGGAGTTCTCCCT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAPVRHR*LPGVLP
Trigger: AGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGG...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCCTGTTAGGCACAGGTaGCTGCCTGGAGTTCTCCCT +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPPVRHR*LPGVLP
Trigger: AGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGG...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAACGGGCCTCCAGTCTTTaGGCTTGGGCTTGCAGTTTA +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQRASSL*AWACSL
Trigger: TAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCG...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTGTTCTGCGAGCTTaGGCCAGCTCCTCAGAGAGG +
Preference number: 4 (lower is better)
Translates to: NAQISAQACPQGMGLSSPSVLRA*ASSSER
Trigger: CCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGA...TGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCCTTGTGCTTCCACATTaGCCCGTTGGGCCTGCAACT +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPLVLPH*PVGPAT
Trigger: AGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAG...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAACTTGTGCTTCCACATTaGCCCGTTGGGCCTGCAACT +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQLVLPH*PVGPAT
Trigger: AGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAG...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCGGTCCAACTGCTGGTTaGACTCACGCAGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAGPTAG*THAAAG
Trigger: GCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACC...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCTGTGAGTCGGGTGCCTaGGAACACTTGGGTGACCTT +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPCESGA*EHLGDL
Trigger: AAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACA...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTACTCCAACTCTGGGTGTaGGTCGGGTGCCTGAGAACA +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALLQLWV*VGCLRT
Trigger: TGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAG...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGAGGTCTGGGGATCCTaGGATACCATCTGGAGAGGA +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPEVWGS*DTIWRG
Trigger: TCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTC...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp AATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCACCTGCACTTCAATTCTaGCCTCTGGACCCTGTGGTG +
Preference number: 4 (lower is better)
Translates to: NAQISAQACPQGMGLSSPPALQF*PLDPVV
Trigger: CACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGG...TGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCTGGTTCTCCTGTTCTTaGAGGAACTTCTGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSWFSCS*RNFWRS
Trigger: AGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCA...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTATCAGCTTCCAGACGCTaGTCCAGATGCCGGTACCTC +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALSASRR*SRCRYL
Trigger: GAGGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGA...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCTCCAGGTGCTGCAGCTaGCCCTGCAGAGCCGCCTTC +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVSRCCS*PCRAAF
Trigger: GAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGA...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTATTGACTTTTCAGCCTaGAGGCGACTGCTGTGCTCC +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCIDFSA*RRLLCS
Trigger: GGAGCACAGCAGTCGCCTGCAGGCTGAAAAGTCAAT...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCGCACTCAGGTCCAACTaGTGGTTGGACTCACGCAGC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAALRSN*WLDSRS
Trigger: GCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGC...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTCCTCTTCACCTTGTCTaGCAGCCAGCTGCCCTTCTT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAPLHLV*QPAALL
Trigger: AAGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGG...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCCTCTTCACCTTGTCTaGCAGCCAGCTGCCCTTCTT +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPPLHLV*QPAALL
Trigger: AAGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGG...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTATCTGTTCTGCGAGCTTaGGCCAGCTCCTCAGAGAGG +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALSVLRA*ASSSER
Trigger: CCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGA...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTCGCAGCTGCTGGCTCTaGATCTCAAGTTGTGCGCGC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSRSCWL*ISSCAR
Trigger: GCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCG...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTGTGATGTCAGAGTATaGTGCTGGAGAAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVCDVRV*CWRRQV
Trigger: GACCTGCCTTCTCCAGCATCATACTCTGACATCACA...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTGTGATGTCAGAGTATaGTGCTGGAGAAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLCDVRV*CWRRQV
Trigger: GACCTGCCTTCTCCAGCATCATACTCTGACATCACA...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGAGGTCTGGGGATCCTaGGATACCATCTGGAGAGGA +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALEVWGS*DTIWRG
Trigger: TCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTC...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGTCTGCTGTGGTTTCTaGGGGCCCAGTTTACTCTCC +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALVCCGF*GPSLLS
Trigger: GGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGAC...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTGCATCTCCATCATTaGCTTTTCAGCCTGCAGGCG +
Preference number: 4 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPLHLHH*LFSLQA
Trigger: CGCCTGCAGGCTGAAAAGTCAATGATGGAGATGCAA...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCCACGGTACTGGTCCATaGTTTTCTCCACCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWAHGTGP*FSPPAS
Trigger: AGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTG...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCTTGGCATTGGTCAGCTaGAGAGCCAGATGGTGCGAG +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPALALVS*RARWCE
Trigger: CTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAA...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCTTTGGGCTTGGGCTTaGAGTTTAACCTCAAGGCCT +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLLWAWA*SLTSRP
Trigger: AGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCTTTGGGCTTGGGCTTaGAGTTTAACCTCAAGGCCT +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVLWAWA*SLTSRP
Trigger: AGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAG...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCCTTACTGGTAGACGCTaGCTGCAGCTCAGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPALTGRR*LQLSFQ
Trigger: CTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCCTTGAGCTCCATCAGTaGCTCCTCCTTACTGGTAGA +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSLELHQ*LLLTGR
Trigger: TCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAG...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCATTGACTTTTCAGCCTaGAGGCGACTGCTGTGCTCC +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPIDFSA*RRLLCS
Trigger: GGAGCACAGCAGTCGCCTGCAGGCTGAAAAGTCAAT...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCTCACACCCCATTGTCTaGAGGTCTGGAGGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: TMLRYQPRPVPREWALAPSHPIV*RSGGGD
Trigger: ATCACCACCTCCAGACCTCCAGACAATGGGGTGTGA...GGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTTACTCTCCAACCCCTTaGGCCTCTGTTCATGCCTTC +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRAYSPTP*ASVHAF
Trigger: GAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTA...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTACGGGCCTCCAGTCTTTaGGCTTGGGCTTGCAGTTTA +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALRASSL*AWACSL
Trigger: TAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCG...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTGACTCACGCAGCTGCTaGCTCTGGATCTCAAGTTGT +
Preference number: 4 (lower is better)
Translates to: ISAQACPQGMGLSSPSRADSRSC*LWISSC
Trigger: ACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTC...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCTCCGGTTTCTGCTCCTaGAAGGCCTCTCGAGTGTCA +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPASGFCS*KASRVS
Trigger: TGACACTCGAGAGGCCTTCCAGGAGCAGAAACCGGA...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCATCAGGCACCCCTTCTaGTGTCTGCTGTGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAIRHPF*CLLWFL
Trigger: CAGAAACCACAGCAGACATCAGAAGGGGTGCCTGAT...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCGTGCTACCTCATCTCTaGGGGCCTGCTCCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVVLPHL*GPAPLG
Trigger: TCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCAC...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTTCCTATGCAGCTCCTaGCCTTGCATCTCCATCATT +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLFLCSS*PCISII
Trigger: AATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAA...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTTGGGCCTCTGTTCATaGCTTCCTGTCTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLLGLCS*LPVSFC
Trigger: ACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAA...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTTGAGCTCCATCAGTaGCTCCTCCTTACTGGTAGA +
Preference number: 4 (lower is better)
Translates to: RYQPRPVPREWALAPHLELELHQ*LLLTGR
Trigger: TCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAG...CTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTGTGGGCCAGCTCCAATaGTCGCATATTGGCCTTGAG +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSVGQLQ*SHIGLE
Trigger: CTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCAC...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCGCTGTCTGAACCGTTaGCTTGGGGTGTCCCCTGGA +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVRCLNR*LGVSPG
Trigger: TCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCG...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCGATTCTTGGAGAGCTTaGTCTGAGGTCTGGGGATCC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPADSWRA*SEVWGS
Trigger: GGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATC...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCATCTGGGCCTGCATTTaGGGCTCTCTTGTTTTAGGA +
Preference number: 4 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSIWACI*GSLVLG
Trigger: TCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGAT...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCAGTCTTTGGGCTTaGGCTTGCAGTTTAACCTCA +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLSSLWA*ACSLTS
Trigger: TGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGA...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGTCTCAGCCACCAGTGTaGCATTATTTCGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLSQPPV*HYFAPL
Trigger: AAGTGGAGCGAAATAATGCCACACTGGTGGCTGAGA...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCGCAGCTGCTGGCTCTaGATCTCAAGTTGTGCGCGC +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVRSCWL*ISSCAR
Trigger: GCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCG...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTCTAGCACACGGTACTaGTCCATGATTTTCTCCACC +
Preference number: 4 (lower is better)
Translates to: RARALARSSRFGPIISPVSSTRY*SMIFST
Trigger: GGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGA...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTGAGGCCCCGGATGTaGCGGATGAAGAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMLRPRM*RMKSSR
Trigger: CCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAG...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR TCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCTGGTTCTCCTGTTCTTaGAGGAACTTCTGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAWFSCS*RNFWRS
Trigger: AGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCA...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCTCCTAGCAACTCCTaGACTTCAATTCTGACCTCT +
Preference number: 4 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQSPSNS*TSILTS
Trigger: AGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGA...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTCTCCTAGCAACTCCTaGACTTCAATTCTGACCTCT +
Preference number: 4 (lower is better)
Translates to: VSQTMLRYQPRPVPREWASPSNS*TSILTS
Trigger: AGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGA...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCCAAGCTTTCCGTGCTaGCAGCCCCATCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMPSFPC*QPHRPP
Trigger: TGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGG...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTGATTCTTGGAGAGCTTaGTCTGAGGTCTGGGGATCC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSDSWRA*SEVWGS
Trigger: GGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATC...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTACTCTCCAACCCCTTaGGCCTCTGTTCATGCCTTC +
Preference number: 4 (lower is better)
Translates to: EWALAPHLELAEGFLAHSYSPTP*ASVHAF
Trigger: GAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTA...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTTCCAGTCTTTGGGCTTaGGCTTGCAGTTTAACCTCA +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPSSLWA*ACSLTS
Trigger: TGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGA...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCTGCACTTCAATTCTaGCCTCTGGACCCTGTGGTG +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVPALQF*PLDPVV
Trigger: CACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGG...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTATTCCTATGCAGCTCCTaGCCTTGCATCTCCATCATT +
Preference number: 4 (lower is better)
Translates to: SQTMLRYQPRPVPREWALFLCSS*PCISII
Trigger: AATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAA...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCTGTCTCTTTCTGTTaGTTGGATAGTTCTAGTTCC +
Preference number: 4 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCPVSFC*LDSSSS
Trigger: GGAACTAGAACTATCCAAGCAACAGAAAGAGACAGG...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGGGGTCTCATGCAGCCTaGCTGAGCGCTCTCGGGCAA +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMGSHAA*LSALGQ
Trigger: TTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCC...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCTCTAGCACACGGTACTaGTCCATGATTTTCTCCACC +
Preference number: 4 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPASSTRY*SMIFST
Trigger: GGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGA...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCCTGTCTCTTTCTGTTaGTTGGATAGTTCTAGTTCC +
Preference number: 4 (lower is better)
Translates to: FRARALARSSRFGPIISPPVSFC*LDSSSS
Trigger: GGAACTAGAACTATCCAAGCAACAGAAAGAGACAGG...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp TCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTCTTTCTGTTGCTTaGATAGTTCTAGTTCCCGAT +
Preference number: 4 (lower is better)
Translates to: SEQEPWPGAPGLDQSSPLSLSVA*IVLVPD
Trigger: ATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGA...CAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCAGATGCCGGTACCTCTaGTGCTGGTTCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVRCRYL*CWFSCS
Trigger: AGAACAGGAGAACCAGCACCAGAGGTACCGGCATCT...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCTTGCATCTCCATCATTaGCTTTTCAGCCTGCAGGCG +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVLHLHH*LFSLQA
Trigger: CGCCTGCAGGCTGAAAAGTCAATGATGGAGATGCAA...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTGGTCACCTCCTGGATTaGACCAGCCAGCTCGCTCTG +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNAGHLLD*TSQLAL
Trigger: CAGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACC...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGTGGGAGTCCAGCAGTTaGTCAGCCTTCTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMWESSS*SAFSST
Trigger: GGTGGAGGAGAAGGCTGAGCAACTGCTGGACTCCCA...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR GCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGTGTCTGCCAGCCAGCTaGCCTTCTTGGTACGGGGTA +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMCLPAS*PSWYGV
Trigger: TACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACA...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp TTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCCTGCCAAGCTGTGCCTaGAGCATCTGTAGTTGGCCT +
Preference number: 4 (lower is better)
Translates to: FSFILLSLVSQTMLRYQPLPSCA*SICSWP
Trigger: AGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAG...GGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCTCCAACTCTGGGTGTaGGTCGGGTGCCTGAGAACA +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNALQLWV*VGCLRT
Trigger: TGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAG...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGTTCGCTCCACTTCGATaGGCCGTCCATTCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMFAPLR*AVHSGS
Trigger: AGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAA...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTTCCCTCACCTCATCTTaGAGTGAGGGTGCTGCTCCG +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNASLTSS*SEGAAP
Trigger: CGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGA...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCTTACTGGTAGACGCTaGCTGCAGCTCAGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNALTGRR*LQLSFQ
Trigger: CTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR TCA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCACGGTACTGGTCCATaGTTTTCTCCACCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMHGTGP*FSPPAS
Trigger: AGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTG...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTAGATGCCGGTACCTCTaGTGCTGGTTCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNARCRYL*CWFSCS
Trigger: AGAACAGGAGAACCAGCACCAGAGGTACCGGCATCT...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTGACTCACGCAGCTGCTaGCTCTGGATCTCAAGTTGT +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNADSRSC*LWISSC
Trigger: ACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTC...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCTCTCTTTCTGTTGCTTaGATAGTTCTAGTTCCCGAT +
Preference number: 4 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVSLSVA*IVLVPD
Trigger: ATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGA...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR GCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTTTGGGCCTCTGTTCATaGCTTCCTGTCTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNALGLCS*LPVSFC
Trigger: ACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAA...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTATCTGGGCCTGCATTTaGGGCTCTCTTGTTTTAGGA +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNAIWACI*GSLVLG
Trigger: TCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGAT...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CCA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTTCTCAGCCACCAGTGTaGCATTATTTCGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNASQPPV*HYFAPL
Trigger: AAGTGGAGCGAAATAATGCCACACTGGTGGCTGAGA...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp GCCGGCCCGCTCCCGCAGTGCCTCTGCCTCCTCGCGGTAGAGCTCTaGGCGCTTGGCTTGTGCGGACAGCGCCTGAGTCTCCTGGCGGAG +
Preference number: 5 (lower is better)
Translates to: AGPLPQCLCLLAVEL*ALGLCGQRLSLLAE
Trigger: CTCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 90 bp TTCCTGCAGGCGTGGCAGGCGGCCGGCCCGCTCCCGCAGTGCCTCTaGCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTTGTGCGGACAG +
Preference number: 5 (lower is better)
Translates to: FLQAWQAAGPLPQCL*LLAVELCALGLCGQ
Trigger: CTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 90 bp CAGTTCTTCCTGCAGGCGTGGCAGGCGGCCGGCCCGCTCCCGCAGTaGCTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTTGTGC +
Preference number: 5 (lower is better)
Translates to: QFFLQAWQAAGPLPQ*LCLLAVELCALGLC
Trigger: GCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp AGCTTGAAGCTTCTCGCGACAGCGCCGCAGTTCTTCCTGCAGGCGTaGCAGGCGGCCGGCCCGCTCCCGCAGTGCCTCTGCCTCCTCGCG +
Preference number: 5 (lower is better)
Translates to: SLKLLATAPQFFLQA*QAAGPLPQCLCLLA
Trigger: CGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 90 bp GAGCCCGCAGCCTGGGCCCGTCACGTTCCCACTGCCTTCGCTCCCTaGCTGCTGCTGCTAGTGCCTCTGCCAGGGCCTCCCTCTCACGAG +
Preference number: 5 (lower is better)
Translates to: EPAAWARHVPTAFAP*LLLLVPLPGPPSHE
Trigger: CTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CGCTGCAGCTGCACCAAGGCCTCATGGTCCCGAAGCAGAGCCTGCTaGTGCCCTCGGGTCTCCTCCTGGGCCCGTCTTGCTGCCCGCACC +
Preference number: 5 (lower is better)
Translates to: RCSCTKASWSRSRAC*CPRVSSWARLAART
Trigger: GGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CGTCGCTGCAGCTGCACCAAGGCCTCATGGTCCCGAAGCAGAGCCTaGTGCTGCCCTCGGGTCTCCTCCTGGGCCCGTCTTGCTGCCCGC +
Preference number: 5 (lower is better)
Translates to: RRCSCTKASWSRSRA*CCPRVSSWARLAAR
Trigger: GCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp TGCAGCTGCACCAAGGCCTCATGGTCCCGAAGCAGAGCCTGCTGCTaGCCTCGGGTCTCCTCCTGGGCCCGTCTTGCTGCCCGCACCTCC +
Preference number: 5 (lower is better)
Translates to: CSCTKASWSRSRACC*PRVSSWARLAARTS
Trigger: GGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CGGTGCCGCACCAACAGTCCCTCCAGCTCCGTCTCCTGCCGTCGCTaGAGCTGCACCAAGGCCTCATGGTCCCGAAGCAGAGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: RCRTNSPSSSVSCRR*SCTKASWSRSRACC
Trigger: GCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp GCTCCCGCAGTGCCTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTTaGCTTGTGCGGACAGCGCCTGAGTCTCCTGGCGGAGCCTTCGAA +
Preference number: 5 (lower is better)
Translates to: APAVPLPPRGRALRA*LVRTAPESPGGAFE
Trigger: TTCGAAGGCTCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp TCATGGTCCCGAAGCAGAGCCTGCTGCTGCCCTCGGGTCTCCTCCTaGGCCCGTCTTGCTGCCCGCACCTCCTCTTCTAGCACCCCCAGC +
Preference number: 5 (lower is better)
Translates to: SWSRSRACCCPRVSS*ARLAARTSSSSTPS
Trigger: GCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp TCCAGGCTGCGCTCCAGCAGCTCCCTGTTCTCCCGGCTCAGGGCCTaGACCTCGGCTAACAGCTGCCTGTTCTCCTCCTCCTGCGCGCTG +
Preference number: 5 (lower is better)
Translates to: SRLRSSSSLFSRLRA*TSANSCLFSSSCAL
Trigger: CAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS GCA 90 bp CCTCTCACGAGATGCAGCCTCCAGCTCCAAGCTAGCCGTATCCACTaGTTCACGCAGACGGGCCTGCTCCCGGGCCTGGGCCTCTGCCTC +
Preference number: 5 (lower is better)
Translates to: PLTRCSLQLQASRIH*FTQTGLLPGLGLCL
Trigger: GAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp GGTACTCTCGCTGCTCTCGATGCAGATGGTCGCGGCTCTCCAGGCTaGGCTCCAGCAGCTCCCTGTTCTCCCGGCTCAGGGCCTGGACCT +
Preference number: 5 (lower is better)
Translates to: GTLAALDADGRGSPG*APAAPCSPGSGPGP
Trigger: AGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS GCA 90 bp TCCATTCTGGGTCTCCACAGTCCGAGGCCCAGCTCGCGCCCCAGTTaGCAGGTCCACCGGGTACTGGCGCAGCTGAATCAGCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: SILGLHSPRPSSRPS*QVHRVLAQLNQLLL
Trigger: GAGGAGGAGCTGATTCAGCTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CGGCGCATGGGTGCTGGTGACGAGGACCCTTGTCTGCCAGCCAGCTaGCCTTCTTGGTACGGGGTAGGGGCCCAGGTTCTAGCACACGGT +
Preference number: 5 (lower is better)
Translates to: RRMGAGDEDPCLPAS*PSWYGVGAQVLAHG
Trigger: ACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACAAGGGTCCTCGTCACCAGCACCCATGCGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS CCA 90 bp CGCTGCCCACCTGCCAGGGTCTCATCTCCCAAGCAGAGAGAGCTCTaGACGCGGCGCATGGGTGCTGGTGACGAGGACCCTGTCCCATCT +
Preference number: 5 (lower is better)
Translates to: RCPPARVSSPKQREL*TRRMGAGDEDPVPS
Trigger: AGATGGGACAGGGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp CGCTGCCCACCTGCCAGGGTCTCATCTCCCAAGCAGAGAGAGCTCTaGACGCGGCGCATGGGTGCTGGTGACGAGGACCCTTGTCTGCCA +
Preference number: 5 (lower is better)
Translates to: RCPPARVSSPKQREL*TRRMGAGDEDPCLP
Trigger: TGGCAGACAAGGGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCCTGGCAAGCGGGGCTTaGGGGGCTGTGATGGAGGGC +
Preference number: 5 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSLASGA*GAVMEG
Trigger: GCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAG...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGCTCCCCGCGTTCACCTaGGAGCTCCCCTCGCTCCCG +
Preference number: 5 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLLPAFT*ELPSLP
Trigger: CGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CAGTGCCTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTTGTaGGGACAGCGCCTGAGTCTCCTGGCGGAGCCTTCGAATTTCAGC +
Preference number: 5 (lower is better)
Translates to: QCLCLLAVELCALGL*GQRLSLLAEPSNFS
Trigger: GCTGAAATTCGAAGGCTCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 90 bp TGGAGGGCCGAGGGAGTTGCTGGATCCCTGTTAGGCACAGGTGGCTaGCTGGAGTTCTCCCTCTGCTCCTCCAGCAGAGGGTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: WRAEGVAGSLLGTGG*LEFSLCSSSRGCWL
Trigger: CAGCCAGCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CGGTGGGCCAGCTCCAATGCTCGCATATTGGCCTTGAGATCTCGGTaGCGCACCAACAGTCCCTCCAGCTCCGTCTCCTGCCGTCGCTGC +
Preference number: 5 (lower is better)
Translates to: RWASSNARILALRSR*RTNSPSSSVSCRRC
Trigger: GCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp CCAGCCAGAGCCAGTACCACACCAGCACCAGGTTGGGTCACCTCCTaGATTGCACCAGCCAGCTCGCTCTGGACGTCAAGGCTGAGGCCC +
Preference number: 5 (lower is better)
Translates to: PARASTTPAPGWVTS*IAPASSLWTSRLRP
Trigger: GGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp GTTCAGCCAACCGCTGTGCCCCCAGATCGCGCTCCCGCGCCAGCCTaGACATCATCCCTGTCAGGCTCCGTAACTGCATCTCCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: VQPTAVPPDRAPAPA*TSSLSGSVTASPAP
Trigger: AGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAGCGGTTGGCTGAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp ACACCCTCCGCAGACGCATTAGCAGGAGCCTCTGGCAGCAGCAAGTaGGCTGGCTCCCGCTCTAGCAGCAGTTCAGCCAACCGCTGTGCC +
Preference number: 5 (lower is better)
Translates to: TPSADALAGASGSSK*AGSRSSSSSANRCA
Trigger: GGCACAGCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp GCACTCAGGTCCAACTGCTGGTTGGACTCACGCAGCTGCTGGCTCTaGATCTCAAGTTGTGCGCGCTCCAGCTCCAGCCTCGCCAGGCGG +
Preference number: 5 (lower is better)
Translates to: ALRSNCWLDSRSCWL*ISSCARSSSSLARR
Trigger: CCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CCA 90 bp CCAGGGTCTCATCTCCCAAGCAGAGAGAGCTCTGGACGCGGCGCATaGGTGCTGGTGACGAGGACCCTTGTCTGCCAGCCAGCTGCCCTT +
Preference number: 5 (lower is better)
Translates to: PGSHLPSRESSGRGA*VLVTRTLVCQPAAL
Trigger: AAGGGCAGCTGGCTGGCAGACAAGGGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTGGCAAGCGGGGCTTaGGGGGCTGTGATGGAGGGC +
Preference number: 5 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCLASGA*GAVMEG
Trigger: GCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAG...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCTCCTGGGCCCGTCTaGCTGCCCGCACCTCCTCTT +
Preference number: 5 (lower is better)
Translates to: QSKSPGQELPVWTNHLPCPPGPV*LPAPPL
Trigger: AAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGG...ACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCTCCCCGCGTTCACCTaGGAGCTCCCCTCGCTCCCG +
Preference number: 5 (lower is better)
Translates to: FRARALARSSRFGPIISPLPAFT*ELPSLP
Trigger: CGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp TCGGCCTGGGAGTCCAGCAGTTGCTCAGCCTTCTCCTCCACCTCCTaGCTCAGGCGTCTCAGCTGGGCCTTGGCATTGGTCAGCTGCAGA +
Preference number: 5 (lower is better)
Translates to: SAWESSSCSAFSSTS*LRRLSWALALVSCR
Trigger: TCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTGGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 90 bp TTGAGATCTCGGTGCCGCACCAACAGTCCCTCCAGCTCCGTCTCCTaGCGTCGCTGCAGCTGCACCAAGGCCTCATGGTCCCGAAGCAGA +
Preference number: 5 (lower is better)
Translates to: LRSRCRTNSPSSSVS*RRCSCTKASWSRSR
Trigger: TCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp GGTGCTGGTGACGAGGACCCTTGTCTGCCAGCCAGCTGCCCTTCTTaGTACGGGGTAGGGGCCCAGGTTCTAGCACACGGTACTGGTCCA +
Preference number: 5 (lower is better)
Translates to: GAGDEDPCLPASCPS*YGVGAQVLAHGTGP
Trigger: TGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACAAGGGTCCTCGTCACCAGCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCCCTCCTGGGCCCGTCTaGCTGCCCGCACCTCCTCTT +
Preference number: 5 (lower is better)
Translates to: PDNAQISAQACPQGMGLSPPGPV*LPAPPL
Trigger: AAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGG...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCAGCCAGCTGCCCTTCTaGGTACGGGGTAGGGGCCCA +
Preference number: 5 (lower is better)
Translates to: RARALARSSRFGPIISPVSQLPF*VRGRGP
Trigger: TGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCT...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 90 bp GCCCCGGATGTGACGGATGAAGAGCTCCCGGTGTTCACACTGCACTaGGGCCCCCAGCAACAGCCGAAGGATGCTTTCCAGCTCGTCCAC +
Preference number: 5 (lower is better)
Translates to: APDVTDEELPVFTLH*GPQQQPKDAFQLVH
Trigger: GTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAGTGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS TCA 90 bp TCGGAGCCTTCACCTCCTATCTGGCAAGCGGGGCTTTGGGGGCTGTaGTGGAGGGCCGAGGGAGTTGCTGGATCCCTGTTAGGCACAGGT +
Preference number: 5 (lower is better)
Translates to: SEPSPPIWQAGLWGL*WRAEGVAGSLLGTG
Trigger: ACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 90 bp GCTTCCACATTGGCCCGTTGGGCCTGCAACTGCTCATGCCGGCCCTaGAGCTCACGGTGGGCCAGCTCCAATGCTCGCATATTGGCCTTG +
Preference number: 5 (lower is better)
Translates to: ASTLARWACNCSCRP*SSRWASSNARILAL
Trigger: CAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGGCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp AACTTCTGGCGCTCTAAGGCTGCCTGTTCTAGCTCCTCCTGCAGATaGTCCAGCCGGTCCCCCAGTTCCTGGCCCCGTAGCACAGCCTTC +
Preference number: 5 (lower is better)
Translates to: NFWRSKAACSSSSCR*SSRSPSSWPRSTAF
Trigger: GAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp CCGGATTCTGGTCCAGCCAGAGCCAGTACCACACCAGCACCAGGTTaGGTCACCTCCTGGATTGCACCAGCCAGCTCGCTCTGGACGTCA +
Preference number: 5 (lower is better)
Translates to: PDSGPARASTTPAPG*VTSWIAPASSLWTS
Trigger: TGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp TGTTCTAGCTCCTCCTGCAGATGCTCCAGCCGGTCCCCCAGTTCCTaGCCCCGTAGCACAGCCTTCTCTAGCTCCTCCCGAAGGGCTTGT +
Preference number: 5 (lower is better)
Translates to: CSSSSCRCSSRSPSS*PRSTAFSSSSRRAC
Trigger: ACAAGCCCTTCGGGAGGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp AGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCTGCAGGGCTCGAGCCTaGAGCTCCATCAGTGCCTCC +
Preference number: 5 (lower is better)
Translates to: RARALARSSRFGPIISPVCRARA*SSISAS
Trigger: GGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCA...GACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 90 bp CCGCCTTCTCAGCCACCAGTGTGGCATTATTTCGCTCCACTTCGATaGGCCGTCCATTCTGGGTCTCCACAGTCCGAGGCCCAGCTCGCG +
Preference number: 5 (lower is better)
Translates to: PPSQPPVWHYFAPLR*AVHSGSPQSEAQLA
Trigger: CGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAATAATGCCACACTGGTGGCTGAGAAGGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 90 bp CCTGAAGCTCACGGTGGGCCAGCTCCAATGCTCGCATATTGGCCTTaGGATCTCGGTGCCGCACCAACAGTCCCTCCAGCTCCGTCTCCT +
Preference number: 5 (lower is better)
Translates to: PEAHGGPAPMLAYWP*DLGAAPTVPPAPSP
Trigger: AGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CTCGGAAAGGACCCGCTCCTCCTCCAGCTGACCCTTGAAGACCTCTaGAGCTTGAAGCTTCTCGCGACAGCGCCGCAGTTCTTCCTGCAG +
Preference number: 5 (lower is better)
Translates to: LGKDPLLLQLTLEDL*SLKLLATAPQFFLQ
Trigger: CTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAGGAGGAGCGGGTCCTTTCCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 90 bp CCTGCAACCTCTCTCCTTAGTTGTGCTACCTCATCTCTGAGGGCCTaGTCCTCTGGGATAGCACTGACCAGGGTCTCCCCCGGGGTTGGC +
Preference number: 5 (lower is better)
Translates to: PATSLLSCATSSLRA*SSGIALTRVSPGVG
Trigger: GCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp GCCTTGAGCTCCATCAGTGCCTCCTCCTTACTGGTAGACGCTGCCTaGAGCTCAGCTTCCAGACGCTGCTCCAGATGCCGGTACCTCTGG +
Preference number: 5 (lower is better)
Translates to: ALSSISASSLLVDAA*SSASRRCSRCRYLW
Trigger: CCAGAGGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CAACTGCTCATGCCGGCCCTGAAGCTCACGGTGGGCCAGCTCCAATaGTCGCATATTGGCCTTGAGATCTCGGTGCCGCACCAACAGTCC +
Preference number: 5 (lower is better)
Translates to: QLLMPALKLTVGQLQ*SHIGLEISVPHQQS
Trigger: GGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGGCATGAGCAGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp AGACGACAGGCACTCAGGTCCAACTGCTGGTTGGACTCACGCAGCTaGTGGCTCTGGATCTCAAGTTGTGCGCGCTCCAGCTCCAGCCTC +
Preference number: 5 (lower is better)
Translates to: RRQALRSNCWLDSRS*WLWISSCARSSSSL
Trigger: GAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCAGGGGTCACACCCCATaGTCTGGAGGTCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSRGHTP*SGGLEV
Trigger: CACCTCCAGACCTCCAGACAATGGGGTGTGACCCCT...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CAA 90 bp TTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTGTACCAACTCCCCTaGGGGAGCCTCCCTGCTTCC +
Preference number: 5 (lower is better)
Translates to: FRARALARSSRFGPIISPVYQLP*GSLPAS
Trigger: GGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACAC...AGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCCTCTGTTCTGCGAGCTaGGGCCAGCTCCTCAGAGAG +
Preference number: 5 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSLCSAS*GQLLRE
Trigger: CTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAG...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp GTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCGCTCGCATATTGGCCTaGAGATCTCGGTGCCGCACC +
Preference number: 5 (lower is better)
Translates to: VSQTMLRYQPRPVPREWAARILA*RSRCRT
Trigger: GGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGC...GGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCGCTCGCATATTGGCCTaGAGATCTCGGTGCCGCACC +
Preference number: 5 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSARILA*RSRCRT
Trigger: GGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGC...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CTTGGTGAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGATGAGCCTCTTCACCTaGTCTGCCAGCCAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: LGEGCTSEQEPWPGAPGLMSLFT*SASQLP
Trigger: GGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCAT...CAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTCACCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCGCTGTCTGAACCGTaGCCTTGGGGTGTCCCCTGG +
Preference number: 5 (lower is better)
Translates to: PDNAQISAQACPQGMGLSSLSEP*PWGVPW
Trigger: CCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGA...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp ATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCCCCATCTAGAGCTTCGCTGTCTGAACCGTaGCCTTGGGGTGTCCCCTGG +
Preference number: 5 (lower is better)
Translates to: ISAQACPQGMGLSSPSRASLSEP*PWGVPW
Trigger: CCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGA...AGCTCTAGATGGGGAGCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp TCGAGCCTTGAGCTCCATCAGTGCCTCCTCCTTACTGGTAGACGCTaGCTGCAGCTCAGCTTCCAGACGCTGCTCCAGATGCCGGTACCT +
Preference number: 5 (lower is better)
Translates to: SSLELHQCLLLTGRR*LQLSFQTLLQMPVP
Trigger: AGGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp AGGGTCTTAATGGAGCCATCCCATTCCACACCAGATCCTTTGCTGTaGGTACTGGGTGCCCCCAGGGGGCCGGGTCTTCGCTGTCTGAAC +
Preference number: 5 (lower is better)
Translates to: RVLMEPSHSTPDPLL*VLGAPRGPGLRCLN
Trigger: GTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAGGATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTGCCAGCCGGGTCACCTCCTGGATaGCACCAGCCAGCTCGCTCT +
Preference number: 5 (lower is better)
Translates to: LSSPSRAGRGFSCPLLPAGSPPG*HQPARS
Trigger: AGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCC...GGCTGGCAAGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CAA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCCGTCTCAGCTGGGCCTaGGCATTGGTCAGCTGCAGA +
Preference number: 5 (lower is better)
Translates to: PDNAQISAQACPQGMGLSRLSWA*ALVSCR
Trigger: TCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACG...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS-3UTR CAA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCGGGCCTCCAGTCTTaGGGCTTGGGCTTGCAGTTT +
Preference number: 5 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQSGLQS*GLGLQF
Trigger: AAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGA...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CAGCTGGGGAGTCTCCCAGGGATCGTCTCCTTGGTGAGGGCTGTACTTCAGAGCTCCACACCAGATCCTTaGCTGTGGGTACTGGGTGCC +
Preference number: 5 (lower is better)
Translates to: QLGSLPGIVSLVRAVLQSSTPDP*LWVLGA
Trigger: GGCACCCAGTACCCACAGCAAAGGATCTGGTGTGGA...GCTCTGAAGTACAGCCCTCACCAAGGAGACGATCCCTGGGAGACTCCCCAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp TGTTCTGCGAGCTTGGGCCAGCTCCTCAGAGAGGCAGAGAGCCTCTaGACTTCGGGCCTCCAGTCTTTGGGCTTGGGCTTGCAGTTTAAC +
Preference number: 5 (lower is better)
Translates to: CSASLGQLLREAESL*TSGLQSLGLGLQFN
Trigger: GTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp CACACTGTGTGGTCAGACGACAGGCACTCAGGTCCAACTGCTGGTTaGACTCACGCAGCTGCTGGCTCTGGATCTCAAGTTGTGCGCGCT +
Preference number: 5 (lower is better)
Translates to: HTVWSDDRHSGPTAG*THAAAGSGSQVVRA
Trigger: AGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCTCGGGCCTCCAGTCTTaGGGCTTGGGCTTGCAGTTT +
Preference number: 5 (lower is better)
Translates to: PDNAQISAQACPQGMGLSSGLQS*GLGLQF
Trigger: AAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGA...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp TGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTGTCCACAGCCTCGTCCCTGGTTCTCCTGTTCTaGAAGGAACTTCTGGCGCTC +
Preference number: 5 (lower is better)
Translates to: WPGAPGLDQSSPLSTASSLVLLF*KELLAL
Trigger: GAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAG...GGACGAGGCTGTGGACAGGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp TCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAATGAGCCTCTTCACCTaGTCTGCCAGCCAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: SQTMLRYQPRPVPREWALMSLFT*SASQLP
Trigger: GGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCAT...TAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 90 bp CGCTGCTCCAGATGCCGGTACCTCTGGTGCTGGTTCTCCTGTTCTTaGAGGAACTTCTGGCGCTCTAAGGCTGCCTGTTCTAGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: RCSRCRYLWCWFSCS*RNFWRSKAACSSSS
Trigger: GGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGGTACCGGCATCTGGAGCAGCG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CCTGACCTTGCATCTCCATCATTGACTTTTCAGCCTGCAGGCGACTaGTGTGCTCCTGAGCCCGCTGACTCTGTAGCAGGAGCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: PDLASPSLTFQPAGD*CAPEPADSVAGAPV
Trigger: CACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp AGCTCGTCCACTGCCTCTTCTGAGAAGGGGTCACACCCCATTGTCTaGAGGTCTGGAGGTGGTGATAGGATCAGCAGCTGTAGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SSSTASSEKGSHPIV*RSGGGDRISSCSSS
Trigger: GGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAAGAGGCAGTGGACGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 90 bp GGGCTCTCTTGTTTTAGGACCTGGGCCTTGTGTACCAACTCCCCTTaGGGAGCCTCCCTGCTTCCAGTCTCTCCTAGCAACTCCTGCACT +
Preference number: 5 (lower is better)
Translates to: GLSCFRTWALCTNSP*GASLLPVSPSNSCT
Trigger: AGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp AGCTCACACTGTGTGGTCAGACGACAGGCACTCAGGTCCAACTGCTaGTTGGACTCACGCAGCTGCTGGCTCTGGATCTCAAGTTGTGCG +
Preference number: 5 (lower is better)
Translates to: SSHCVVRRQALRSNC*LDSRSCWLWISSCA
Trigger: CGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp CTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAATCATCTCCCCTCTTTGGGCTTGGGCTaGCAGTTTAACCTCAAGGCC +
Preference number: 5 (lower is better)
Translates to: LQSKSPGQELPVWTNHLPSLGLG*QFNLKA
Trigger: GGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGA...GGGGAGATGATTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp TCTTTCTGTTGCTTGGATAGTTCTAGTTCCCGATCCAGGGCCTTCTaGTCCTTCAGAGGCTCCCGGAGGGTGAGCTCAGCAGATCTGGGC +
Preference number: 5 (lower is better)
Translates to: SFCCLDSSSSRSRAF*SFRGSRRVSSADLG
Trigger: GCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp ATTTTCTCCACCAGCTTCTGTTTCTCCCGGCGCAAGGCATTAAGCTaGTCCAGGTACTCTCGCTGCTCTCGATGCAGATGGTCGCGGCTC +
Preference number: 5 (lower is better)
Translates to: IFSTSFCFSRRKALS*SRYSRCSRCRWSRL
Trigger: GAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCTGGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CCA 90 bp TGGCTGAGGGAAGGGGTAAGGAACTGTTTCTCCGGTTTCTGCTCCTaGAAGGCCTCTCGAGTGTCATCTGCTTCATGCTCCGAGAGGGTC +
Preference number: 5 (lower is better)
Translates to: WLREGVRNCFSGFCS*KASRVSSASCSERV
Trigger: GACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGGCCTTCCAGGAGCAGAAACCGGAGAAACAGTTCCTTACCCCTTCCCTCAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCGTGTACCAACTCCCCTaGGGGAGCCTCCCTGCTTCC +
Preference number: 5 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVVYQLP*GSLPAS
Trigger: GGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACAC...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp GAATGGGCCTTAGCTCCCCATCTAGAGCTGGCAGAGGGTTTTCTTGCCCACTCTTCCACACCAGATCCTTaGCTGTGGGTACTGGGTGCC +
Preference number: 5 (lower is better)
Translates to: EWALAPHLELAEGFLAHSSTPDP*LWVLGA
Trigger: GGCACCCAGTACCCACAGCAAAGGATCTGGTGTGGA...AGAGTGGGCAAGAAAACCCTCTGCCAGCTCTAGATGGGGAGCTAAGGCCCATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp AGAAGCTCACACTGTGTGGTCAGACGACAGGCACTCAGGTCCAACTaGTGGTTGGACTCACGCAGCTGCTGGCTCTGGATCTCAAGTTGT +
Preference number: 5 (lower is better)
Translates to: RSSHCVVRRQALRSN*WLDSRSCWLWISSC
Trigger: ACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGCTTCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS-3UTR CAA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCTCTGTTCTGCGAGCTaGGGCCAGCTCCTCAGAGAG +
Preference number: 5 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVLCSAS*GQLLRE
Trigger: CTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAG...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 90 bp GTAGGGTCTGATTCTTGGAGAGCTTGGTCTGAGGTCTGGGGATCCTaGGATACCATCTGGAGAGGACTCTCCAACTCTGGGTGTGAGTCG +
Preference number: 5 (lower is better)
Translates to: VGSDSWRAWSEVWGS*DTIWRGLSNSGCES
Trigger: CGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 90 bp CTGTTTCTCCGGTTTCTGCTCCTGGAAGGCCTCTCGAGTGTCATCTaGTTCATGCTCCGAGAGGGTCTTAATGGAGCCATCCCATTCCAC +
Preference number: 5 (lower is better)
Translates to: LFLRFLLLEGLSSVI*FMLREGLNGAIPFH
Trigger: GTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGGCCTTCCAGGAGCAGAAACCGGAGAAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp GAGGGCTGTACTTCAGAGCAAGAGCCCTGGCCAGGAGCTCCCGGTTTGGACCAAGTCTCTTTCTGTTGCTaGGATAGTTCTAGTTCCCGA +
Preference number: 5 (lower is better)
Translates to: EGCTSEQEPWPGAPGLDQVSFCC*DSSSSR
Trigger: TCGGGAACTAGAACTATCCAAGCAACAGAAAGAGAC...TTGGTCCAAACCGGGAGCTCCTGGCCAGGGCTCTTGCTCTGAAGTACAGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp ACCCCTTGGGCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTTGCTTaGATAGTTCTAGTTCCCGATCCAGGGCCTTCTGGTCCTTCAGAG +
Preference number: 5 (lower is better)
Translates to: TPWASVHAFLSLSVA*IVLVPDPGPSGPSE
Trigger: CTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CCAGACAATGCTCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTTAGCGTCTCTTTCTGTTGCTaGGATAGTTCTAGTTCCCGA +
Preference number: 5 (lower is better)
Translates to: PDNAQISAQACPQGMGLSVSFCC*DSSSSR
Trigger: TCGGGAACTAGAACTATCCAAGCAACAGAAAGAGAC...GCTAAGGCCCATTCCCTGGGGACAGGCCTGGGCTGATATCTGAGCATTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp CCAGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGTGCAGGGCTCGAGCCTaGAGCTCCATCAGTGCCTCC +
Preference number: 5 (lower is better)
Translates to: PDSRGFSFILLSLVSQTMCRARA*SSISAS
Trigger: GGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCA...CATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTAGCCAGCTGCCCTTCTaGGTACGGGGTAGGGGCCCA +
Preference number: 5 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNASQLPF*VRGRGP
Trigger: TGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCT...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp ATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCAGGCCTGTCTTACTCTCCAACCCCTaGGGCCTCTGTTCATGCCTT +
Preference number: 5 (lower is better)
Translates to: ILLSLVSQTMLRYQPRPVLLSNP*GLCSCL
Trigger: AAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAA...GACAGGCCTGGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 90 bp ATGTCTGCTGTGGTTTCTGAGGGCCCAGTTTACTCTCCAACCCCTTaGGCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTTGCTTGGATA +
Preference number: 5 (lower is better)
Translates to: MSAVVSEGPVYSPTP*ASVHAFLSLSVAWI
Trigger: TATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp TTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCTTACTCTCCAACCCCTaGGGCCTCTGTTCATGCCTT +
Preference number: 5 (lower is better)
Translates to: FSFILLSLVSQTMLRYQPLLSNP*GLCSCL
Trigger: AAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAA...GGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp TTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCAGATATCAGCCCCTGGTTCTCCTGTTCTaGAAGGAACTTCTGGCGCTC +
Preference number: 5 (lower is better)
Translates to: FSFILLSLVSQTMLRYQPLVLLF*KELLAL
Trigger: GAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAG...GGGCTGATATCTGAGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTTCTTTGGGCTTGGGCTaGCAGTTTAACCTCAAGGCC +
Preference number: 5 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNASLGLG*QFNLKA
Trigger: GGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGA...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS-3UTR CAA 90 bp AGATTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGCTCTTGCATCTCCATCATaGACTTTTCAGCCTGCAGGC +
Preference number: 5 (lower is better)
Translates to: RFKGFQLYSSFPRVPDNALASPS*TFQPAG
Trigger: GCCTGCAGGCTGAAAAGTCAATGATGGAGATGCAAG...AGCATTGTCTGGGACACGAGGGAAAGAAGAATAAAGCTGAAACCCCTTGAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp GCGTGGCAGGCGGCCGGCCCGCTCCCGCAGTGCCTCTaGCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTTG +
Preference number: 6 (lower is better)
Translates to: AWQAAGPLPQCL*LLAVELCALGL
Trigger: CAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp CTGCAGGCGTGGCAGGCGGCCGGCCCGCTCCCGCAGTaGCTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTT +
Preference number: 6 (lower is better)
Translates to: LQAWQAAGPLPQ*LCLLAVELCAL
Trigger: AAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CAA 72 bp CCTCGCCAGGCGGCTCCGCAGCTCCCCGCGTTCACCTaGGAGCTCCCCTCGCTCCCGGGACACCTCGGCCAG +
Preference number: 6 (lower is better)
Translates to: PRQAAPQLPAFT*ELPSLPGHLGQ
Trigger: CTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CTTCTCGCGACAGCGCCGCAGTTCTTCCTGCAGGCGTaGCAGGCGGCCGGCCCGCTCCCGCAGTGCCTCTGC +
Preference number: 6 (lower is better)
Translates to: LLATAPQFFLQA*QAAGPLPQCLC
Trigger: GCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 72 bp CTCGCCAGGCGGCTCCGCAGCTCCCCGCGTTCACCTTaGAGCTCCCCTCGCTCCCGGGACACCTCGGCCAGT +
Preference number: 6 (lower is better)
Translates to: LARRLRSSPRSP*SSPRSRDTSAS
Trigger: ACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 72 bp CCTCGCCAGGCGGCTCCGCAGCTCCCCGCGTTCACCTaGGAGCTCCCCTCGCTCCCGGGACACCTCGGCCNN +
Preference number: 6 (lower is better)
Translates to: PRQAAPQLPAFT*ELPSLPGHLGX
Trigger: NNGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS GCA 72 bp TTCACGCAGACGGGCCTGCTCCCGGGCCTGGGCCTCTaGCTCCTGATGGGCCTCCGCCTCTGTTCTGCGAGC +
Preference number: 6 (lower is better)
Translates to: FTQTGLLPGLGL*LLMGLRLCSAS
Trigger: GCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp GCCTGGGCCCGTCACGTTCCCACTGCCTTCGCTCCCTaGCTGCTGCTGCTAGTGCCTCTGCCAGGGCCTCCC +
Preference number: 6 (lower is better)
Translates to: AWARHVPTAFAP*LLLLVPLPGPP
Trigger: GGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CCTGCTGCTCGGCAGCCTCAACTTGAGCCCGCAGCCTaGGCCCGTCACGTTCCCACTGCCTTCGCTCCCTGC +
Preference number: 6 (lower is better)
Translates to: PAARQPQLEPAA*ARHVPTAFAPC
Trigger: GCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 90 bp GACCTGGCTCTCCAGAGCCTGCACCTGCTGCTCGGCAGCCTCAACTaGAGCCCGCAGCCTGGGCCCGTCACGTTCCCACTGCCTTCGCTC +
Preference number: 6 (lower is better)
Translates to: DLALQSLHLLLGSLN*SPQPGPVTFPLPSL
Trigger: GAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp TGCCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTTGTaGGGACAGCGCCTGAGTCTCCTGGCGGAGCCTTCG +
Preference number: 6 (lower is better)
Translates to: CLLAVELCALGL*GQRLSLLAEPS
Trigger: CGAAGGCTCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp CTCCCGCAGTGCCTCTGCCTCCTCGCGGTAGAGCTCTaGGCGCTTGGCTTGTGCGGACAGCGCCTGAGTCTC +
Preference number: 6 (lower is better)
Translates to: LPQCLCLLAVEL*ALGLCGQRLSL
Trigger: GAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp CGGTGCCGCACCAACAGTCCCTCCAGCTCCGTCTCCTaGCGTCGCTGCAGCTGCACCAAGGCCTCATGGTCC +
Preference number: 6 (lower is better)
Translates to: RCRTNSPSSSVS*RRCSCTKASWS
Trigger: GGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp GTGCCTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTTaGCTTGTGCGGACAGCGCCTGAGTCTCCTGGCGGA +
Preference number: 6 (lower is better)
Translates to: VPLPPRGRALRA*LVRTAPESPGG
Trigger: TCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCAC
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 72 bp CGAAGCAGAGCCTGCTGCTGCCCTCGGGTCTCCTCCTaGGCCCGTCTTGCTGCCCGCACCTCCTCTTCTAGC +
Preference number: 6 (lower is better)
Translates to: RSRACCCPRVSS*ARLAARTSSSS
Trigger: GCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 72 bp CTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTaGTGCGGACAGCGCCTGAGTCTCCTGGCGGAGCCT +
Preference number: 6 (lower is better)
Translates to: LCLLAVELCALG*CGQRLSLLAEP
Trigger: AGGCTCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CAA 72 bp CTCCAGAGCCTGCACCTGCTGCTCGGCAGCCTCAACTaGAGCCCGCAGCCTGGGCCCGTCACGTTCCCACTG +
Preference number: 6 (lower is better)
Translates to: LQSLHLLLGSLN*SPQPGPVTFPL
Trigger: CAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 90 bp CTGGGCCTCTGCCTCCTGATGGGCCTCCGCCTCTGTTCTGCGAGCTaGGGCCAGCTCCTCAGAGAGGCAGAGAGCCTCTGCACTTCGGGC +
Preference number: 6 (lower is better)
Translates to: LGLCLLMGLRLCSAS*GQLLREAESLCTSG
Trigger: GCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp AGATGCAGCCTCCAGCTCCAAGCTAGCCGTATCCACTaGTTCACGCAGACGGGCCTGCTCCCGGGCCTGGGC +
Preference number: 6 (lower is better)
Translates to: RCSLQLQASRIH*FTQTGLLPGLG
Trigger: GCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp AGCTGCACCAAGGCCTCATGGTCCCGAAGCAGAGCCTaGTGCTGCCCTCGGGTCTCCTCCTGGGCCCGTCTT +
Preference number: 6 (lower is better)
Translates to: SCTKASWSRSRA*CCPRVSSWARL
Trigger: AAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CGCTCCAGCAGCTCCCTGTTCTCCCGGCTCAGGGCCTaGACCTCGGCTAACAGCTGCCTGTTCTCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: RSSSSLFSRLRA*TSANSCLFSSS
Trigger: GGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 90 bp CCGCAGTGCCTCTGCCTCCTCGCGGTAGAGCTCTGCGCGCTTGGCTaGTGCGGACAGCGCCTGAGTCTCCTGGCGGAGCCTTCGAATTTC +
Preference number: 6 (lower is better)
Translates to: PQCLCLLAVELCALG*CGQRLSLLAEPSNF
Trigger: GAAATTCGAAGGCTCCGCCAGGAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CAA 90 bp GTCCATTCTGGGTCTCCACAGTCCGAGGCCCAGCTCGCGCCCCAGTaGCCAGGTCCACCGGGTACTGGCGCAGCTGAATCAGCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: VHSGSPQSEAQLAPQ*PGPPGTGAAESAPP
Trigger: AGGAGGAGCTGATTCAGCTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 90 bp GAAGCAGAGCCTGCTGCTGCCCTCGGGTCTCCTCCTGGGCCCGTCTaGCTGCCCGCACCTCCTCTTCTAGCACCCCCAGCTTCCTATGCA +
Preference number: 6 (lower is better)
Translates to: EAEPAAALGSPPGPV*LPAPPLLAPPASYA
Trigger: TGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp ACCGCTGTGCCCCCAGATCGCGCTCCCGCGCCAGCCTaGACATCATCCCTGTCAGGCTCCGTAACTGCATCT +
Preference number: 6 (lower is better)
Translates to: TAVPPDRAPAPA*TSSLSGSVTAS
Trigger: AGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAGCGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 72 bp TCCTCCTGCAGATGCTCCAGCCGGTCCCCCAGTTCCTaGCCCCGTAGCACAGCCTTCTCTAGCTCCTCCCGA +
Preference number: 6 (lower is better)
Translates to: SSCRCSSRSPSS*PRSTAFSSSSR
Trigger: TCGGGAGGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CCTGCCAGGGTCTCATCTCCCAAGCAGAGAGAGCTCTaGACGCGGCGCATGGGTGCTGGTGACGAGGACCCT +
Preference number: 6 (lower is better)
Translates to: PARVSSPKQREL*TRRMGAGDEDP
Trigger: AGGGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 72 bp GTTGGACTCACGCAGCTGCTGGCTCTGGATCTCAAGTaGTGCGCGCTCCAGCTCCAGCCTCGCCAGGCGGCT +
Preference number: 6 (lower is better)
Translates to: VGLTQLLALDLK*CALQLQPRQAA
Trigger: AGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAAC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS TCA 72 bp TTGGCCCGTTGGGCCTGCAACTGCTCATGCCGGCCCTaGAGCTCACGGTGGGCCAGCTCCAATGCTCGCATA +
Preference number: 6 (lower is better)
Translates to: LARWACNCSCRP*SSRWASSNARI
Trigger: TATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGGCATGAGCAGTTGCAGGCCCAACGGGCCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp CTCAGGCGTCTCAGCTGGGCCTTGGCATTGGTCAGCTaGAGAGCCAGATGGTGCGAGACACCCTCCGCAGAC +
Preference number: 6 (lower is better)
Translates to: LRRLSWALALVS*RARWCETPSAD
Trigger: GTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp ACCAACAGTCCCTCCAGCTCCGTCTCCTGCCGTCGCTaGAGCTGCACCAAGGCCTCATGGTCCCGAAGCAGA +
Preference number: 6 (lower is better)
Translates to: TNSPSSSVSCRR*SCTKASWSRSR
Trigger: TCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp GGTGCTGGTGACGAGGACCCTTGTCTGCCAGCCAGCTaGCCTTCTTGGTACGGGGTAGGGGCCCAGGTTCTA +
Preference number: 6 (lower is better)
Translates to: GAGDEDPCLPAS*PSWYGVGAQVL
Trigger: TAGAACCTGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACAAGGGTCCTCGTCACCAGCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS CCA 72 bp GGTCCAGCCAGAGCCAGTACCACACCAGCACCAGGTTaGGTCACCTCCTGGATTGCACCAGCCAGCTCGCTC +
Preference number: 6 (lower is better)
Translates to: GPARASTTPAPG*VTSWIAPASSL
Trigger: GAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 72 bp GGCCGAGGGAGTTGCTGGATCCCTGTTAGGCACAGGTaGCTGCCTGGAGTTCTCCCTCTGCTCCTCCAGCAG +
Preference number: 6 (lower is better)
Translates to: GRGSCWIPVRHR*LPGVLPLLLQQ
Trigger: CTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CATCTCCCAAGCAGAGAGAGCTCTGGACGCGGCGCATaGGTGCTGGTGACGAGGACCCTGTCCCATCTGCCT +
Preference number: 6 (lower is better)
Translates to: HLPSRESSGRGA*VLVTRTLSHLP
Trigger: AGGCAGATGGGACAGGGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp ATGGAGCCATCCCATTCCACACCAGATCCTTTGCTGTaGGTACTGGGTGCCCCCAGGGGGCCGGGTCTTCGC +
Preference number: 6 (lower is better)
Translates to: MEPSHSTPDPLL*VLGAPRGPGLR
Trigger: GCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAGGATCTGGTGTGGAATGGGATGGCTCCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CATCTCCCAAGCAGAGAGAGCTCTGGACGCGGCGCATaGGTGCTGGTGACGAGGACCCTTGTCTGCCAGCCA +
Preference number: 6 (lower is better)
Translates to: HLPSRESSGRGA*VLVTRTLVCQP
Trigger: TGGCTGGCAGACAAGGGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238099.2
CDS CAA 72 bp CGCTCTGCCAGTAGGGCTACCTCTTGTGCTTCCACATaGGCCCGTTGGGCCTGCAACTGCTCATGCCGGCCC +
Preference number: 6 (lower is better)
Translates to: RSASRATSCAST*ARWACNCSCRP
Trigger: GGGCCGGCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 90 bp TCCGGATTCTGGTCCAGCCAGAGCCAGTACCACACCAGCACCAGGTaGGGTCACCTCCTGGATTGCACCAGCCAGCTCGCTCTGGACGTC +
Preference number: 6 (lower is better)
Translates to: SGFWSSQSQYHTSTR*GHLLDCTSQLALDV
Trigger: GACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CAA 90 bp GGCCGAATGAGCCTCTTCACCTTGTCTGCCAGCCAGCTGCCCTTCTaGGTACGGGGTAGGGGCCCAGGTTCTAGCACACGGTACTGGTCC +
Preference number: 6 (lower is better)
Translates to: GRMSLFTLSASQLPF*VRGRGPGSSTRYWS
Trigger: GGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp TGGGCCTTGGCATTGGTCAGCTGCAGAGCCAGATGGTaGGAGACACCCTCCGCAGACGCATTAGCAGGAGCC +
Preference number: 6 (lower is better)
Translates to: WALALVSCRARW*ETPSADALAGA
Trigger: GGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp CTGTTAGGCACAGGTGGCTGCCTGGAGTTCTCCCTCTaGTCCTCCAGCAGAGGGTGCTGGCTGCCAAGCTGT +
Preference number: 6 (lower is better)
Translates to: LLGTGGCLEFSL*SSSRGCWLPSC
Trigger: ACAGCTTGGCAGCCAGCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp GAGGGAGTTGCTGGATCCCTGTTAGGCACAGGTGGCTaGCTGGAGTTCTCCCTCTGCTCCTCCAGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: EGVAGSLLGTGG*LEFSLCSSSRG
Trigger: CCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp ATGCCGGCCCTGAAGCTCACGGTGGGCCAGCTCCAATaGTCGCATATTGGCCTTGAGATCTCGGTGCCGCAC +
Preference number: 6 (lower is better)
Translates to: MPALKLTVGQLQ*SHIGLEISVPH
Trigger: GTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGGCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp GCATTAAGCTGGTCCAGGTACTCTCGCTGCTCTCGATaGAGATGGTCGCGGCTCTCCAGGCTGCGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: ALSWSRYSRCSR*RWSRLSRLRSS
Trigger: GCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCTGGACCAGCTTAATGC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS GCA 72 bp CGGCGCAAGGCATTAAGCTGGTCCAGGTACTCTCGCTaGTCTCGATGCAGATGGTCGCGGCTCTCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: RRKALSWSRYSR*SRCRWSRLSRL
Trigger: CAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCTGGACCAGCTTAATGCCTTGCGCCG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CCA 72 bp GCCAGTACCACACCAGCACCAGGTTGGGTCACCTCCTaGATTGCACCAGCCAGCTCGCTCTGGACGTCAAGG +
Preference number: 6 (lower is better)
Translates to: ASTTPAPGWVTS*IAPASSLWTSR
Trigger: CCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTACTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CCA 72 bp GCTTTGGGGGCTGTGATGGAGGGCCGAGGGAGTTGCTaGATCCCTGTTAGGCACAGGTGGCTGCCTGGAGTT +
Preference number: 6 (lower is better)
Translates to: ALGAVMEGRGSC*IPVRHRWLPGV
Trigger: AACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp GCCTCTTCACCTTGTCTGCCAGCCAGCTGCCCTTCTTaGTACGGGGTAGGGGCCCAGGTTCTAGCACACGGT +
Preference number: 6 (lower is better)
Translates to: ASSPCLPASCPS*YGVGAQVLAHG
Trigger: ACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 72 bp TGGTCCAGCCAGAGCCAGTACCACACCAGCACCAGGTaGGGTCACCTCCTGGATTGCACCAGCCAGCTCGCT +
Preference number: 6 (lower is better)
Translates to: WSSQSQYHTSTR*GHLLDCTSQLA
Trigger: AGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CAA 72 bp AGCCTCTTCACCTTGTCTGCCAGCCAGCTGCCCTTCTaGGTACGGGGTAGGGGCCCAGGTTCTAGCACACGG +
Preference number: 6 (lower is better)
Translates to: SLFTLSASQLPF*VRGRGPGSSTR
Trigger: CCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAAGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 90 bp TCCGAGAGGGTCTTAATGGAGCCATCCCATTCCACACCAGATCCTTaGCTGTGGGTACTGGGTGCCCCCAGGGGGCCGGGTCTTCGCTGT +
Preference number: 6 (lower is better)
Translates to: SERVLMEPSHSTPDP*LWVLGAPRGPGLRC
Trigger: ACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAGGATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 72 bp TCCACATCCGACAGGCTGCAGGACCATCACGGCCCCTaGCCATTCGAAGTCCTCCTCGGGAACTGGGAGCAA +
Preference number: 6 (lower is better)
Translates to: STSDRLQDHHGP*PFEVLLGNWEQ
Trigger: TTGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS TCA 72 bp AGCTCGCTCTGGACGTCAAGGCTGAGGCCCCGGATGTaGCGGATGAAGAGCTCCCGGTGTTCACACTGCACT +
Preference number: 6 (lower is better)
Translates to: SSLWTSRLRPRM*RMKSSRCSHCT
Trigger: AGTGCAGTGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS TCA 72 bp CACGGTGGGCCAGCTCCAATGCTCGCATATTGGCCTTaGGATCTCGGTGCCGCACCAACAGTCCCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: HGGPAPMLAYWP*DLGAAPTVPPA
Trigger: AGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp TACCACACCAGCACCAGGTTGGGTCACCTCCTGGATTaGACCAGCCAGCTCGCTCTGGACGTCAAGGCTGAG +
Preference number: 6 (lower is better)
Translates to: YHTSTRLGHLLD*TSQLALDVKAE
Trigger: CTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAGGTGACCCAACCTGGTGCTGGTGTGGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp TCCATCAGTGCCTCCTCCTTACTGGTAGACGCTGCCTaGAGCTCAGCTTCCAGACGCTGCTCCAGATGCCGG +
Preference number: 6 (lower is better)
Translates to: SISASSLLVDAA*SSASRRCSRCR
Trigger: CCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp GCACTCAGGTCCAACTGCTGGTTGGACTCACGCAGCTaGTGGCTCTGGATCTCAAGTTGTGCGCGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: ALRSNCWLDSRS*WLWISSCARSS
Trigger: GCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CCA 72 bp TCCAACTGCTGGTTGGACTCACGCAGCTGCTGGCTCTaGATCTCAAGTTGTGCGCGCTCCAGCTCCAGCCTC +
Preference number: 6 (lower is better)
Translates to: SNCWLDSRSCWL*ISSCARSSSSL
Trigger: GAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 72 bp TCACGGTGGGCCAGCTCCAATGCTCGCATATTGGCCTaGAGATCTCGGTGCCGCACCAACAGTCCCTCCAGC +
Preference number: 6 (lower is better)
Translates to: SRWASSNARILA*RSRCRTNSPSS
Trigger: GCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 72 bp GTGACGGATGAAGAGCTCCCGGTGTTCACACTGCACTaGGGCCCCCAGCAACAGCCGAAGGATGCTTTCCAG +
Preference number: 6 (lower is better)
Translates to: VTDEELPVFTLH*GPQQQPKDAFQ
Trigger: CTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAGTGTGAACACCGGGAGCTCTTCATCCGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp GAGCTCCATCAGTGCCTCCTCCTTACTGGTAGACGCTaGCTGCAGCTCAGCTTCCAGACGCTGCTCCAGATG +
Preference number: 6 (lower is better)
Translates to: ELHQCLLLTGRR*LQLSFQTLLQM
Trigger: CATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp AGCTCCAATGCTCGCATATTGGCCTTGAGATCTCGGTaGCGCACCAACAGTCCCTCCAGCTCCGTCTCCTGC +
Preference number: 6 (lower is better)
Translates to: SSNARILALRSR*RTNSPSSSVSC
Trigger: GCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp CACTGTGTGGTCAGACGACAGGCACTCAGGTCCAACTaGTGGTTGGACTCACGCAGCTGCTGGCTCTGGATC +
Preference number: 6 (lower is better)
Translates to: HCVVRRQALRSN*WLDSRSCWLWI
Trigger: GATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 90 bp TCACACTGTGTGGTCAGACGACAGGCACTCAGGTCCAACTGCTGGTaGGACTCACGCAGCTGCTGGCTCTGGATCTCAAGTTGTGCGCGC +
Preference number: 6 (lower is better)
Translates to: SHCVVRRQALRSNCW*DSRSCWLWISSCAR
Trigger: GCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 90 bp TTCAGAGGCTCCCGGAGGGTGAGCTCAGCAGATCTGGGCCTGCATTaGGGGCTCTCTTGTTTTAGGACCTGGGCCTTGTGTACCAACTCC +
Preference number: 6 (lower is better)
Translates to: FRGSRRVSSADLGLH*GLSCFRTWALCTNS
Trigger: GGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 72 bp TGGCTCCTCCCTGGACCAGGCATCAGGCACCCCTTCTaGTGTCTGCTGTGGTTTCTGAGGGCCCAGTTTACT +
Preference number: 6 (lower is better)
Translates to: WLLPGPGIRHPF*CLLWFLRAQFT
Trigger: AGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 72 bp CAGCCACCAGTGTGGCATTATTTCGCTCCACTTCGATaGGCCGTCCATTCTGGGTCTCCACAGTCCGAGGCC +
Preference number: 6 (lower is better)
Translates to: QPPVWHYFAPLR*AVHSGSPQSEA
Trigger: GGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAATAATGCCACACTGGTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp TCTCTCCTTAGTTGTGCTACCTCATCTCTGAGGGCCTaGTCCTCTGGGATAGCACTGACCAGGGTCTCCCCC +
Preference number: 6 (lower is better)
Translates to: SLLSCATSSLRA*SSGIALTRVSP
Trigger: GGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp CTCCTGCACTTCAATTCTGACCTCTGGACCCTGTGGTaGGTCCCAGACGATGGGACTCTGGAGAGGGACTCT +
Preference number: 6 (lower is better)
Translates to: LLHFNSDLWTLW*VPDDGTLERDS
Trigger: AGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp TGTGTGGTCAGACGACAGGCACTCAGGTCCAACTGCTaGTTGGACTCACGCAGCTGCTGGCTCTGGATCTCA +
Preference number: 6 (lower is better)
Translates to: CVVRRQALRSNC*LDSRSCWLWIS
Trigger: TGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 72 bp TCCCGGAGGGTGAGCTCAGCAGATCTGGGCCTGCATTaGGGGCTCTCTTGTTTTAGGACCTGGGCCTTGTGT +
Preference number: 6 (lower is better)
Translates to: SRRVSSADLGLH*GLSCFRTWALC
Trigger: ACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 72 bp GTGGTCAGACGACAGGCACTCAGGTCCAACTGCTGGTaGGACTCACGCAGCTGCTGGCTCTGGATCTCAAGT +
Preference number: 6 (lower is better)
Translates to: VVRRQALRSNCW*DSRSCWLWISS
Trigger: ACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS TCA 72 bp GTAGGGGCCCAGGTTCTAGCACACGGTACTGGTCCATaGTTTTCTCCACCAGCTTCTGTTTCTCCCGGCGCA +
Preference number: 6 (lower is better)
Translates to: VGAQVLAHGTGP*FSPPASVSPGA
Trigger: TGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS GCA 72 bp GCATCTCCATCATTGACTTTTCAGCCTGCAGGCGACTaGTGTGCTCCTGAGCCCGCTGACTCTGTAGCAGGA +
Preference number: 6 (lower is better)
Translates to: ASPSLTFQPAGD*CAPEPADSVAG
Trigger: TCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGGCTGAAAAGTCAATGATGGAGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp AGAGCCTCTGCACTTCGGGCCTCCAGTCTTTGGGCTTaGGCTTGCAGTTTAACCTCAAGGCCTGCAACCTCT +
Preference number: 6 (lower is better)
Translates to: RASALRASSLWA*ACSLTSRPATS
Trigger: AGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp ACCAGCTTCTGTTTCTCCCGGCGCAAGGCATTAAGCTaGTCCAGGTACTCTCGCTGCTCTCGATGCAGATGG +
Preference number: 6 (lower is better)
Translates to: TSFCFSRRKALS*SRYSRCSRCRW
Trigger: CCATCTGCATCGAGAGCAGCGAGAGTACCTGGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
ENSMUST00000238099.2
CDS CAA 72 bp CGTCCACTGCCTCTTCTGAGAAGGGGTCACACCCCATaGTCTGGAGGTCTGGAGGTGGTGATAGGATCAGCA +
Preference number: 6 (lower is better)
Translates to: RPLPLLRRGHTP*SGGLEVVIGSA
Trigger: TGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAAGAGGCAGTGGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS CAA 90 bp TTTCCAGCTCGTCCACTGCCTCTTCTGAGAAGGGGTCACACCCCATaGTCTGGAGGTCTGGAGGTGGTGATAGGATCAGCAGCTGTAGCT +
Preference number: 6 (lower is better)
Translates to: FPARPLPLLRRGHTP*SGGLEVVIGSAAVA
Trigger: AGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAAGAGGCAGTGGACGAGCTGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS GCA 72 bp TCTGCACTTCGGGCCTCCAGTCTTTGGGCTTGGGCTTaGAGTTTAACCTCAAGGCCTGCAACCTCTCTCCTT +
Preference number: 6 (lower is better)
Translates to: SALRASSLWAWA*SLTSRPATSLL
Trigger: AAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp CGGTTTCTGCTCCTGGAAGGCCTCTCGAGTGTCATCTaGTTCATGCTCCGAGAGGGTCTTAATGGAGCCATC +
Preference number: 6 (lower is better)
Translates to: RFLLLEGLSSVI*FMLREGLNGAI
Trigger: GATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGGCCTTCCAGGAGCAGAAACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp ACTGCCTCTTCTGAGAAGGGGTCACACCCCATTGTCTaGAGGTCTGGAGGTGGTGATAGGATCAGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: TASSEKGSHPIV*RSGGGDRISSC
Trigger: ACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAAGAGGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113440.2
CDS TCA 72 bp GATTCTTGGAGAGCTTGGTCTGAGGTCTGGGGATCCTaGGATACCATCTGGAGAGGACTCTCCAACTCTGGG +
Preference number: 6 (lower is better)
Translates to: DSWRAWSEVWGS*DTIWRGLSNSG
Trigger: CCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 72 bp AGATGCCGGTACCTCTGGTGCTGGTTCTCCTGTTCTTaGAGGAACTTCTGGCGCTCTAAGGCTGCCTGTTCT +
Preference number: 6 (lower is better)
Translates to: RCRYLWCWFSCS*RNFWRSKAACS
Trigger: AGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGGTACCGGCATCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS TCA 72 bp AGAGGACTCTCCAACTCTGGGTGTGAGTCGGGTGCCTaGGAACACTTGGGTGACCTTGTGATGTCAGAGTAT +
Preference number: 6 (lower is better)
Translates to: RGLSNSGCESGA*EHLGDLVMSEY
Trigger: ATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp GTGGTTTCTGAGGGCCCAGTTTACTCTCCAACCCCTTaGGCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTT +
Preference number: 6 (lower is better)
Translates to: VVSEGPVYSPTP*ASVHAFLSLSV
Trigger: AACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 72 bp GGCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTTGCTaGGATAGTTCTAGTTCCCGATCCAGGGCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: GLCSCLPVSFCC*DSSSSRSRAFW
Trigger: CCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CAA 90 bp AACCCCTTGGGCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTTGCTaGGATAGTTCTAGTTCCCGATCCAGGGCCTTCTGGTCCTTCAGA +
Preference number: 6 (lower is better)
Translates to: NPLGLCSCLPVSFCC*DSSSSRSRAFWSFR
Trigger: TCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS GCA 72 bp TTGGGCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTTaGTTGGATAGTTCTAGTTCCCGATCCAGGGCCTTC +
Preference number: 6 (lower is better)
Translates to: LGLCSCLPVSFC*LDSSSSRSRAF
Trigger: GAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2
CDS CCA 72 bp GCCTCTGTTCATGCCTTCCTGTCTCTTTCTGTTGCTTaGATAGTTCTAGTTCCCGATCCAGGGCCTTCTGGT +
Preference number: 6 (lower is better)
Translates to: ASVHAFLSLSVA*IVLVPDPGPSG
Trigger: ACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113440.2
ENSMUST00000236028.2