RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC88A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032740

Ensembl transcript IDs: ENSMUST00000040182.13, ENSMUST00000109477.2, ENSMUST00000123561.8, ENSMUST00000140194.2, ENSMUST00000155854.8, ENSMUST00000239407.2

Found 223 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AACCTGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTaGACCAAAACATTTCCATGGCCAGCTAGGAGGCATGTTATTAGA +
Preference number: 1 (lower is better)
Translates to: NLSRELFGNHQLRKP*TKTFPWPARRHVIR
Trigger: TCTAATAACATGCCTCCTAGCTGGCCATGGAAATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACAGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 90 bp TCAGGGTTGGCCTACTCCAAGTTAATACATTACAGTATTTCTAGCTaGTGTGCTGATTACCTCAGCAGGTTCAAACTGCTTTACCCTCAT +
Preference number: 1 (lower is better)
Translates to: SGLAYSKLIHYSISS*CADYLSRFKLLYPH
Trigger: ATGAGGGTAAAGCAGTTTGAACCTGCTGAGGTAATCAGCACATCAGCTAGAAATACTGTAATGTATTAACTTGGAGTAGGCCAACCCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 90 bp TTTTATCACTCTTGTATTTCATTATGGAAATTACTGCATATCTTATaGGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAGA +
Preference number: 1 (lower is better)
Translates to: FYHSCISLWKLLHIL*AALPLQCIQTIGSR
Trigger: TCTAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCAGTAATTTCCATAATGAAATACAAGAGTGATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CAA 90 bp AAGAAAAAGAAAGTGACTATAAAAACCATCTCAAACAATGGTATCTaGTCGTGCATGGACTCCTGTGACAGACATCAGGTGCCACCGAGG +
Preference number: 2 (lower is better)
Translates to: KKKKVTIKTISNNGI*SCMDSCDRHQVPPR
Trigger: CCTCGGTGGCACCTGATGTCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTATAGTCACTTTCTTTTTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CAA 90 bp CGTGCATGGACTCCTGTGACAGACATCAGGTGCCACCGAGGAAAGTaGTTTTGTTATTCAACTCTACCTCCCTTATTAGCATTAATTTTA +
Preference number: 2 (lower is better)
Translates to: RAWTPVTDIRCHRGK*FCYSTLPPLLALIL
Trigger: TAAAATTAATGCTAATAAGGGAGGTAGAGTTGAATAACAAAACAACTTTCCTCGGTGGCACCTGATGTCTGTCACAGGAGTCCATGCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTTCACACTGAGAAACTaGAGGACACTTTTCTCTCCC +
Preference number: 2 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHFTLRN*RTLFSP
Trigger: GGGAGAGAAAAGTGTCCTTCAGTTTCTCAGTGTGAA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGCACTTCCTTTGCAGTaGATCCAAACAATTGGCTCT +
Preference number: 2 (lower is better)
Translates to: IKTISNNGILSCMDSCDRALPLQ*IQTIGS
Trigger: AGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGAGCTGCACTTCCTTTaGAGTGCATCCAAACAATTG +
Preference number: 2 (lower is better)
Translates to: IKTISNNGILSCMDSCDRELHFL*SASKQL
Trigger: CAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATaGGCTCTAGAAACAAAAACAATAACCAGCGTACCAACACATGCA +
Preference number: 2 (lower is better)
Translates to: CISYELHFLCSASKQ*ALETKTITSVPTHA
Trigger: TGCATGTGTTGGTACGCTGGTTATTGTTTTTGTTTCTAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATACAGTATTTCTAGCTaGTGTGCTGATTACCTCAGC +
Preference number: 2 (lower is better)
Translates to: IKTISNNGILSCMDSCDRYSISS*CADYLS
Trigger: GCTGAGGTAATCAGCACATCAGCTAGAAATACTGTA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGACAGCGTACCAACACATaGACTCTGCTAATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: IKTISNNGILSCMDSCDRQRTNT*TLLMKE
Trigger: TTCTTTCATTAGCAGAGTGCATGTGTTGGTACGCTG...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGCATATCTTATGAGCTaGACTTCCTTTGCAGTGCAT +
Preference number: 2 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHAYLMS*TSFAVH
Trigger: ATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGTCTCTAGACTTCCATaGTACCCATTTACCAATTTG +
Preference number: 2 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHVSRLP*YPFTNL
Trigger: CAAATTGGTAAATGGGTATCATGGAAGTCTAGAGAC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGGTCTTTCCAATGGTTaGTATAAACACAACCTGCTA +
Preference number: 2 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHGLSNG*YKHNLL
Trigger: TAGCAGGTTGTGTTTATAGCAACCATTGGAAAGACC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGACATTATGGAAATTACTaGATATCTTATGAGCTGCAC +
Preference number: 2 (lower is better)
Translates to: IKTISNNGILSCMDSCDRHYGNY*ISYELH
Trigger: GTGCAGCTCATAAGATATGCAGTAATTTCCATAATG...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR TCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCATAAAGTCTTCACACTaGGAAACTGAAGGACACTTT +
Preference number: 2 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFIKSSH*ETEGHF
Trigger: AAAGTGTCCTTCAGTTTCTCAGTGTGAAGACTTTAT...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 72 bp CTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTaGCAGACATCAGGTGCCACCGAGGAAAGTTGTTTT +
Preference number: 3 (lower is better)
Translates to: LKQWYLVVHGLL*QTSGATEESCF
Trigger: AAAACAACTTTCCTCGGTGGCACCTGATGTCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR GCA 72 bp TCTTGTCGTGCATGGACTCCTGTGACAGACATCAGGTaGCACCGAGGAAAGTTGTTTTGTTATTCAACTCTA +
Preference number: 3 (lower is better)
Translates to: SCRAWTPVTDIR*HRGKLFCYSTL
Trigger: TAGAGTTGAATAACAAAACAACTTTCCTCGGTGGCACCTGATGTCTGTCACAGGAGTCCATGCACGACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR GCA 72 bp ACTATAAAAACCATCTCAAACAATGGTATCTTGTCGTaGATGGACTCCTGTGACAGACATCAGGTGCCACCG +
Preference number: 3 (lower is better)
Translates to: TIKTISNNGILS*MDSCDRHQVPP
Trigger: CGGTGGCACCTGATGTCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTATAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 72 bp CCTAGGGCTAGGGTTATAGTGAATGTTTGGTGTAGGTaGGGTCCTAGAATCAAGTTCCACGAATGGCAAAAT +
Preference number: 3 (lower is better)
Translates to: PRARVIVNVWCR*GPRIKFHEWQN
Trigger: ATTTTGCCATTCGTGGAACTTGATTCTAGGACCTCACCTACACCAAACATTCACTATAACCCTAGCCCTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
3UTR-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTGTTCCTTAGAATACTaGACCTTAAACACTCGGTCC +
Preference number: 3 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHCSLEY*TLNTRS
Trigger: GGACCGAGTGTTTAAGGTCAAGTATTCTAAGGAACA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAACCTTCTAAAACTTTaGGCAGCTGAATCCAGTAGT +
Preference number: 3 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHNLLKL*AAESSS
Trigger: ACTACTGGATTCAGCTGCCAAAAGTTTTAGAAGGTT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGACCAACTCAGAAAACCTaGAACCAAAACATTTCCATG +
Preference number: 3 (lower is better)
Translates to: IKTISNNGILSCMDSCDRPTQKT*NQNISM
Trigger: CATGGAAATGTTTTGGTTCAAGGTTTTCTGAGTTGG...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 72 bp GCCTACTCCAAGTTAATACATTACAGTATTTCTAGCTaGTGTGCTGATTACCTCAGCAGGTTCAAACTGCTT +
Preference number: 3 (lower is better)
Translates to: AYSKLIHYSISS*CADYLSRFKLL
Trigger: AAGCAGTTTGAACCTGCTGAGGTAATCAGCACATCAGCTAGAAATACTGTAATGTATTAACTTGGAGTAGGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAGTGCATCCAAACAATaGGCTCTAGAAACAAAAACA +
Preference number: 3 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHSASKQ*ALETKT
Trigger: TGTTTTTGTTTCTAGAGCCAATTGTTTGGATGCACT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTCTTGTAAATGCTATTaGCTGGAAAACCATCTCACT +
Preference number: 3 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHSCKCY*LENHLT
Trigger: AGTGAGATGGTTTTCCAGCAAATAGCATTTACAAGA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 72 bp AGTGTTAAGACAGTTCAGGCTGTAGTAATCCATTTGTaGGGTGGTTACAATTCTGTAATGTGCACAGTGATT +
Preference number: 3 (lower is better)
Translates to: SVKTVQAVVIHL*GGYNSVMCTVI
Trigger: AATCACTGTGCACATTACAGAATTGTAACCACCTCACAAATGGATTACTACAGCCTGAACTGTCTTAACACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR TCA 72 bp CTGTCTCTAGACTTCCATGATACCCATTTACCAATTTaGGACTTGAATCTAAGGAGTCACAAAGAAGATTTC +
Preference number: 3 (lower is better)
Translates to: LSLDFHDTHLPI*DLNLRSHKEDF
Trigger: GAAATCTTCTTTGTGACTCCTTAGATTCAAGTCTCAAATTGGTAAATGGGTATCATGGAAGTCTAGAGACAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CCA 72 bp TTAACAGTTGGAGGACTGCTCAATAATACAGGAGTTTaGCTAGTAGTTATCAGGTCCAAGATTCATTACATA +
Preference number: 3 (lower is better)
Translates to: LTVGGLLNNTGV*LVVIRSKIHYI
Trigger: TATGTAATGAATCTTGGACCTGATAACTACTAGCCAAACTCCTGTATTATTGAGCAGTCCTCCAACTGTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
3UTR-3UTR CAA 90 bp TTCATCAGTAAAACTTTCAACTTAACAGTTGGAGGACTGCTCAATAATACAGGAATAGTGCCAACAATTTaGGCAATCGTAAGTAAGCAT +
Preference number: 3 (lower is better)
Translates to: FISKTFNLTVGGLLNNTGIVPTI*AIVSKH
Trigger: ATGCTTACTTACGATTGCCAAAATTGTTGGCACTAT...TCCTGTATTATTGAGCAGTCCTCCAACTGTTAAGTTGAAAGTTTTACTGATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
3UTR TCA 72 bp TCTTGTATTTCATTATGGAAATTACTGCATATCTTATaGGCTGCACTTCCTTTGCAGTGCATCCAAACAATT +
Preference number: 3 (lower is better)
Translates to: SCISLWKLLHIL*AALPLQCIQTI
Trigger: AATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCAGTAATTTCCATAATGAAATACAAGA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAGGAAGTGCTGCCTGCTaGGGAGTCCGCAGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALGSAAC*GVRSAP
Trigger: CGGAGCACTGCGGACTCCGCAGCAGGCAGCACTTCC...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAAGTCTTTCCACTTACTaGCCTGGCCAGGGTACAGCT +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALSLSTY*PGQGTA
Trigger: AGCTGTACCCTGGCCAGGTCAGTAAGTGGAAAGACT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGGGCTGGTCATGAACTaGTCCAGAAGGGGAGTGAAG +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRGLVMN*SRRGVK
Trigger: CTTCACTCCCCTTCTGGAGCAGTTCATGACCAGCCC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCTGCGGAGTCCGCAGTaGTCCGGAGCTCTTCTACGG +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFLRSPQ*SGALLR
Trigger: CCGTAGAAGAGCTCCGGAGCACTGCGGACTCCGCAG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTATTAGGATTTTGGAAGTaGTGCCTGCTGCGGAGTCCG +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALLGFWK*CLLRSP
Trigger: CGGACTCCGCAGCAGGCAGCACTTCCAAAATCCTAA...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTACTCCTGCTAGGACCATaGACTGCACCAGGTCATTCA +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALLLLGP*TAPGHS
Trigger: TGAATGACCTGGTGCAGTCCATGGTCCTAGCAGGAG...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAGAAGCTTGCCGCTCATaGAGAAGTTCCAGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALEACRS*RSSSFS
Trigger: CGAAAAGCTGGAACTTCTTCATGAGCGGCAAGCTTC...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTACTGGAGCATAGGGCTTaGCCTGGTCTGTCTTTTCAA +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALLEHRA*PGLSFQ
Trigger: TTGAAAAGACAGACCAGGTCAAGCCCTATGCTCCAG...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGTTTCCCTGCAGAGCTaGTGGTGTAGGCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHVSLQS*WCRHLQ
Trigger: CTGAAGATGCCTACACCATCAGCTCTGCAGGGAAAC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AGCATCATTCTCAACTTTTCAACTGAGGTTGTGGAAAACCTGAGAACTGAGATAGGGCTGGTCATGAACTaGTCCAGAAGGGGAGTGAAG +
Preference number: 4 (lower is better)
Translates to: SIILNFSTEVVENLRTEIGLVMN*SRRGVK
Trigger: CTTCACTCCCCTTCTGGAGCAGTTCATGACCAGCCC...TATCTCAGTTCTCAGGTTTTCCACAACCTCAGTTGAAAAGTTGAGAATGATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
CDS-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGGTCTGCCTCTGCAGTaGAAGAATCTGAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHGLPLQ*KNLSLQ
Trigger: TTGCAGGCTCAGATTCTTGCACTGCAGAGGCAGACC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGTGGTATTCTGCTCCTaGAATGACACGGTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHVVFCS*NDTVCL
Trigger: GAGGCAGACCGTGTCATTGCAGGAGCAGAATACCAC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGAAGAAATCCTTCACTaGAGTCTGAGCGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDREEILH*SLSGWV
Trigger: CACCCACCCGCTCAGACTCCAGTGAAGGATTTCTTC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTGGCATTCTGTGTCTaGAGCGTGGTATTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRLAFCV*SVVFCS
Trigger: GGAGCAGAATACCACGCTTCAGACACAGAATGCCAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGATCATGAAGCAGACTaGAATCTCCACTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRDHEAD*NLHCCG
Trigger: GCCACAGCAGTGGAGATTTCAGTCTGCTTCATGATC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTTCTGTTCGCTTCATaGCTGGAGAACCACAGGGTG +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRFLFAS*LENHRV
Trigger: CACCCTGTGGTTCTCCAGGCATGAAGCGAACAGAAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGGATTTTGGAAGTGCTaGCTGCTGCGGAGTCCGCAG +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFGFWKC*LLRSPQ
Trigger: CTGCGGACTCCGCAGCAGGCAGCACTTCCAAAATCC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTGCAATGACACGGTCTaGCTCTGCAGTGCAAGAATC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHCNDTV*LCSARI
Trigger: GATTCTTGCACTGCAGAGGCAGACCGTGTCATTGCA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTATCTCCTTTTACCCGTTaGAATATCATCAGGGACCTC +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALSPFTR*NIIRDL
Trigger: GAGGTCCCTGATGATATTTCAACGGGTAAAAGGAGA...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGCTGGTCTTGAAGCATaGACTCTTGATCCCGTACTA +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRAGLEA*TLDPVL
Trigger: TAGTACGGGATCAAGAGTTCATGCTTCAAGACCAGC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATACCTACTGTCATCAGTaGTCTGCTCATCGTGTAGGA +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHTYCHQ*SAHRVG
Trigger: TCCTACACGATGAGCAGAGCACTGATGACAGTAGGT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGACAGTGCTTGCTTCTCTaGTTGCAGCGTAGCATTGTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRQCLLL*LQRSIV
Trigger: AACAATGCTACGCTGCAAGCAGAGAAGCAAGCACTG...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTACAGTTGAGTTTTCAGTaGTTGCTTCTCTGCTTGCAG +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALQLSFQ*LLLCLQ
Trigger: CTGCAAGCAGAGAAGCAAGCACTGAAAACTCAACTG...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp CTTTTCTCTCTACGAACAGGAGCATCATTCTCAACTTTTCAACTGAGGTTGTGGATTTGGAGCATGACCTaGTTCAAGAATACCCCATCC +
Preference number: 4 (lower is better)
Translates to: LFSLRTGASFSTFQLRLWIWSMT*FKNTPS
Trigger: GGATGGGGTATTCTTGAACCAGGTCATGCTCCAAAT...CCACAACCTCAGTTGAAAAGTTGAGAATGATGCTCCTGTTCGTAGAGAGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
CDS-3UTR CCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATCAACTTTTAGGATTTTaGAAGTGCTGCCTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHQLLGF*KCCLLR
Trigger: CCGCAGCAGGCAGCACTTCCAAAATCCTAAAAGTTG...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTGGAGTCTGAGCGGGTaGGTGTTAGTGTTAGAGATT +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHWSLSG*VLVLEI
Trigger: AATCTCTAACACTAACACCCACCCGCTCAGACTCCA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATGCCACTATCAAGGCTaGCTGGTCTTGAAGCATGAA +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRCHYQG*LVLKHE
Trigger: TTCATGCTTCAAGACCAGCCAGCCTTGATAGTGGCA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGGTTCTATGTCTTCCTaGGACATATCTGTCACTTCC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHGSMSS*DISVTS
Trigger: GGAAGTGACAGATATGTCTCAGGAAGACATAGAACC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTATCAAGTTGCTTCAGTTaGGTTTTCAGTGCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALSSCFS*VFSACF
Trigger: GAAGCAAGCACTGAAAACTCAACTGAAGCAACTTGA...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATACCTCTTGAATGTGTaGAGCAACTGCTGCTTTCGT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRYLLNV*SNCCFR
Trigger: ACGAAAGCAGCAGTTGCTGCACACATTCAAGAGGTA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGCTTGCTTCTCTGCTTaGAGCGTAGCATTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHACFSA*SVALFL
Trigger: AAGAAACAATGCTACGCTGCAAGCAGAGAAGCAAGC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAGTTTCAGATATTTTGTaGTGGAGCATAGGGCTTGAC +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALVSDIL*WSIGLD
Trigger: GTCAAGCCCTATGCTCCAGCACAAAATATCTGAAAC...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTGGTGTAGGTTTCCCTaGAGAGCTGATGGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFWCRFP*RADGVG
Trigger: GCCTACACCATCAGCTCTGCAGGGAAACCTACACCA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAATTTGGAGCATGACCTaGTTCAAGAATACCCCATCC +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRIWSMT*FKNTPS
Trigger: GGATGGGGTATTCTTGAACCAGGTCATGCTCCAAAT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTGGTCCCCAGGGTTTaGCCATCTTCTAAAGAGTTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRLVPRV*PSSKEF
Trigger: AAACTCTTTAGAAGATGGCCAAACCCTGGGGACCAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATACTGCTGTGGCTTTGTaGCCTGCTTTGGATATTAAC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHTAVAL*PALDIN
Trigger: GTTAATATCCAAAGCAGGCCACAAAGCCACAGCAGT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CAA 72 bp TATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATaGGCTCTAGAAACAAAAACAATAACCAGCGTACCA +
Preference number: 4 (lower is better)
Translates to: YELHFLCSASKQ*ALETKTITSVP
Trigger: TGGTACGCTGGTTATTGTTTTTGTTTCTAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CAA 72 bp AAAGTGACTATAAAAACCATCTCAAACAATGGTATCTaGTCGTGCATGGACTCCTGTGACAGACATCAGGTG +
Preference number: 4 (lower is better)
Translates to: KVTIKTISNNGI*SCMDSCDRHQV
Trigger: CACCTGATGTCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTATAGTCACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGCATGGGGTAGGAAATaGACACCATCTCGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFAWGRK*TPSRSS
Trigger: AGAAGAGCGAGATGGTGTTCATTTCCTACCCCATGC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCAAGCTTATCAACTCTaGCTGCTTTCTCTCGGAGGG +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFQAYQL*LLSLGG
Trigger: CCCTCCGAGAGAAAGCAGTCAGAGTTGATAAGCTTG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAAAGCTTCTTGTACTCTaGAGCTACCACTTCATGGTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRKLLVL*SYHFMV
Trigger: AACCATGAAGTGGTAGCTTCAGAGTACAAGAAGCTT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATCCTAGACCTGCTTTTTaGATTTCTGCTCTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHPRPAF*ISALLY
Trigger: GTACAAGAGAGCAGAAATTCAAAAAGCAGGTCTAGG...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGTTAGTCCCATTTCCTaGAGCCAGAGGTCCAAACGT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFVSPIS*SQRSKR
Trigger: ACGTTTGGACCTCTGGCTGCAGGAAATGGGACTAAC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TTCATCAGTAAAACTTTCAACTTAACAGTTGGAGGACTGCTCAATAATACAGGAGTTAGTCCCATTTCCTaGAGCCAGAGGTCCAAACGT +
Preference number: 4 (lower is better)
Translates to: FISKTFNLTVGGLLNNTGVSPIS*SQRSKR
Trigger: ACGTTTGGACCTCTGGCTGCAGGAAATGGGACTAAC...TCCTGTATTATTGAGCAGTCCTCCAACTGTTAAGTTGAAAGTTTTACTGATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
CDS-3UTR GCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTATTATTATTAACCAACTaGTTGGATCGGAAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALLLLTN*LDRKAA
Trigger: TGCAGCCTTCCGATCCAAGCAGTTGGTTAATAATAA...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTTGTTCACATTAGATaGTGTAGTGCTGCTGCTACC +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRFVHIR*CSAAAT
Trigger: GGTAGCAGCAGCACTACAGCATCTAATGTGAACAAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGCCCAAGGACTTCTGTaGTGCTTCAGCAAGTTCACT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFAQGLL*CFSKFT
Trigger: AGTGAACTTGCTGAAGCACCACAGAAGTCCTTGGGC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGAAGCTACCACTTCATaGTTTTTGCTTTCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHEATTS*FLLSSS
Trigger: GCTGCTTGAAAGCAAAAACCATGAAGTGGTAGCTTC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCAAATCTCCACTGCTGTaGCTTTGTGGCCTGCTTTGG +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFKSPLL*LCGLLW
Trigger: CCAAAGCAGGCCACAAAGCCACAGCAGTGGAGATTT...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTATTGCACGAGGTAAAGTaGCATAAGGATTGCTATCTT +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALLHEVK*HKDCYL
Trigger: AAGATAGCAATCCTTATGCCACTTTACCTCGTGCAA...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp CTTTTCTCTCTACGAACAGGAGCATCATTCTCAACTTTTCAACTGAGGTTGTGGAGGGATTTTTGCCAATaGTTAAGATATCTGGCAATG +
Preference number: 4 (lower is better)
Translates to: LFSLRTGASFSTFQLRLWRDFCQ*LRYLAM
Trigger: CATTGCCAGATATCTTAATCATTGGCAAAAATCCCT...CCACAACCTCAGTTGAAAAGTTGAGAATGATGCTCCTGTTCGTAGAGAGAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
CDS-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAAGTTCCAGCTTTTCGTaGTCTTTTATCAGAGCATCA +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRSSSFS*SFIRAS
Trigger: TGATGCTCTGATAAAAGATCACGAAAAGCTGGAACT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGTGATATCTAGTTGCTaGTACTGCTCCTTTAGCTTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRVISSC*YCSFSF
Trigger: AAAGCTAAAGGAGCAGTATCAGCAACTAGATATCAC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAAGTGTTAGAGATTTCTaGCGTTCCCGATTAATATCT +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALSVRDF*RSRLIS
Trigger: AGATATTAATCGGGAACGTCAGAAATCTCTAACACT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAGAAGAGTTGACAGTTaGAAAGTTGATGGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHRRVDS*KVDGCS
Trigger: ACTACAGCCATCAACTTTTCAACTGTCAACTCTTCT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTGTCTTTTCAAATACTaGATTGGACTGCTACCACTG +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHCLFKY*IGLLPL
Trigger: CAGTGGTAGCAGTCCAATTCAGTATTTGAAAAGACA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGCATCTTCAGTCTTTTaGGGACCAGTTCTCAAAAAT +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHASSVF*GPVLKN
Trigger: ATTTTTGAGAACTGGTCCTCAAAAGACTGAAGATGC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAGTTTTATCTTTCCTTaGGTGCTTGGTGTAGGTTTC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHSFIFP*VLGVGF
Trigger: GAAACCTACACCAAGCACTCAAGGAAAGATAAAACT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAAATGTGTGCAGCAACTaGTGCTTTCGTATCAAAATC +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRNVCSN*CFRIKI
Trigger: GATTTTGATACGAAAGCAGCAGTTGCTGCACACATT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTTTCTTCCAATTCCTaGCTAAGTCTTCGGATCTTG +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRFSSNS*LSLRIL
Trigger: CAAGATCCGAAGACTTAGGCAGGAATTGGAAGAAAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGTTTTCAAGTTCTTCTaGTCGCTCTCCTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRVFKFF*SLSFLF
Trigger: AAAGAGAAAGGAGAGCGAGCAGAAGAACTTGAAAAC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTGCTTTCCATATTTTaGTCCAGCAGTGTTCTGTTC +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRLLSIF*SSSVLF
Trigger: GAACAGAACACTGCTGGAGCAAAATATGGAAAGCAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAAATTTCCTTTAAGTTaGCTGAGCAACTCACACTGG +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHKFPLS*LSNSHW
Trigger: CCAGTGTGAGTTGCTCAGCCAACTTAAAGGAAATTT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTACCTTCTAGGAGGAGATaGGTCATAAAATTTGTATTG +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALPSRRR*VIKFVL
Trigger: CAATACAAATTTTATGACCCATCTCCTCCTAGAAGG...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCTTTCCTTGAGTGCTTaGTGTAGGTTTCCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFLSLSA*CRFPCR
Trigger: TCTGCAGGGAAACCTACACCAAGCACTCAAGGAAAG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
3UTR CAA 72 bp TGTGACAGACATCAGGTGCCACCGAGGAAAGTTGTTTaGTTATTCAACTCTACCTCCCTTATTAGCATTAAT +
Preference number: 4 (lower is better)
Translates to: CDRHQVPPRKVV*LFNSTSLISIN
Trigger: ATTAATGCTAATAAGGGAGGTAGAGTTGAATAACAAAACAACTTTCCTCGGTGGCACCTGATGTCTGTCACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAGGGATTTTTGCCAATaGTTAAGATATCTGGCAATG +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHRDFCQ*LRYLAM
Trigger: CATTGCCAGATATCTTAATCATTGGCAAAAATCCCT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTTCTACAATAGTCTCTaGATGTTCATCTCTCTCATC +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHFYNSL*MFISLI
Trigger: GATGAGAGAGATGAACATTCAGAGACTATTGTAGAA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTTGTCCTTTTCAAGTTaGGATGTCTCTTGCTCTAAT +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHLSFSS*DVSCSN
Trigger: ATTAGAGCAAGAGACATCTCAACTTGAAAAGGACAA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTCTTCAATTTCTCACTaGCTAAATCCTCACGTAATG +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHSSISH*LNPHVM
Trigger: CATTACGTGAGGATTTAGTCAGTGAGAAATTGAAGA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTGCAGTGCAAGAATCTaGGCCTGCAAATTATTATTT +
Preference number: 4 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHCSARI*ACKLLF
Trigger: AAATAATAATTTGCAGGCTCAGATTCTTGCACTGCA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCAATTCCACTGAGAGATaGTGTCGACTTTCTGTTCGC +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFNSTER*CRLSVR
Trigger: GCGAACAGAAAGTCGACAGCATCTCTCAGTGGAATT...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGGTATCTTTTATTTCTaGTTGTTGTCGGAGTCGTTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRGIFYF*LLSESF
Trigger: AAACGACTCCGACAACAAGCAGAAATAAAAGATACC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAAAGTGGCATAAGGATTaGTATCTTTTGATTGTCTTG +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALKWHKD*YLLIVL
Trigger: CAAGACAATCAAAAGATAGCAATCCTTATGCCACTT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCTCCAGAGACTGGAATaGAACTCTGTACCATCCTTT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFLQRLE*NSVPSF
Trigger: AAAGGATGGTACAGAGTTCCATTCCAGTCTCTGGAG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAAGAAGCTGTGCATTCTaGTTCATAAGTGAAGTACTT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRRSCAF*FISEVL
Trigger: AAGTACTTCACTTATGAACCAGAATGCACAGCTTCT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAATCACTAATACCTTGTaGACTTATGTCTTCAAAGGA +
Preference number: 4 (lower is better)
Translates to: CISYELHFLCSASKQLALITNTL*TYVFKG
Trigger: TCCTTTGAAGACATAAGTCCACAAGGTATTAGTGAT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTTCAAATACTGAATTaGACTGCTACCACTGCTAGA +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRFQILN*TATTAR
Trigger: TCTAGCAGTGGTAGCAGTCCAATTCAGTATTTGAAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGTAGAATTTTCAACCTaGAGCTTGGCATTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFVEFST*SLAFCV
Trigger: GACACAGAATGCCAAGCTTCAGGTTGAAAATTCTAC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGTCACTTCCATCCATTaGAGATCAAATACATTTTCT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRVTSIH*RSNTFS
Trigger: AGAAAATGTATTTGATCTGCAATGGATGGAAGTGAC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATCCATCTCCATATCATaGAATTTAGCCTTTAGTTGT +
Preference number: 4 (lower is better)
Translates to: IKTISNNGILSCMDSCDRSISIS*NLAFSC
Trigger: ACAACTAAAGGCTAAATTGCATGATATGGAGATGGA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCAATTCATTTACCTCATaGCCCAAGGACTTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFNSFTS*PKDFCG
Trigger: ACCACAGAAGTCCTTGGGCCATGAGGTAAATGAATT...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTCTAAGGAAGACTGCTaGATTAGAAGCTGTGCATTC +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFSKEDC*IRSCAF
Trigger: GAATGCACAGCTTCTAATCCAGCAGTCTTCCTTAGA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR TCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTCTAAAAGATTCTCTTaGCTCGAGGACTTCAACTGT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFSKRFS*LEDFNC
Trigger: ACAGTTGAAGTCCTCGAGTCAAGAGAATCTTTTAGA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTTCATGTTCTCTTGTTaGAGCCTCTTCAATTCCACT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFFMFSC*SLFNST
Trigger: AGTGGAATTGAAGAGGCTGCAACAAGAGAACATGAA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGACTTAGGATTAATTTaGAGCATGACCTGGTTCAAG +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFDLGLI*SMTWFK
Trigger: CTTGAACCAGGTCATGCTCCAAATTAATCCTAAGTC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp TTCATCAGTAAAACTTTCAACTTAACAGTTGGAGGACTGCTCAATAATACAGGAGACTTAGGATTAATTTaGAGCATGACCTGGTTCAAG +
Preference number: 4 (lower is better)
Translates to: FISKTFNLTVGGLLNNTGDLGLI*SMTWFK
Trigger: CTTGAACCAGGTCATGCTCCAAATTAATCCTAAGTC...TCCTGTATTATTGAGCAGTCCTCCAACTGTTAAGTTGAAAGTTTTACTGATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCGAGTTCCTTCTAGTTaGTCTTCCAGCATAGTTTTT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFRVPSS*SSSIVF
Trigger: AAAAACTATGCTGGAAGACCAACTAGAAGGAACTCG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCATGAAAGAGATCCTTaGTTTCCATATTTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFHERDP*FPYFAP
Trigger: TGGAGCAAAATATGGAAAGCAAGGATCTCTTTCATG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCGTTTTCGTCAGACTCTaGTTTTCCATTTCCAACTTT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFVFVRL*FSISNF
Trigger: AAAGTTGGAAATGGAAAACCAGAGTCTGACGAAAAC...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR GCA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCATACTTTGTTTCTGTaGCATTTCCAGAGTCATATT +
Preference number: 4 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFHTLFL*HFQSHI
Trigger: AATATGACTCTGGAAATGGCACAGAAACAAAGTATG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS GCA 90 bp CAGCCAATTCCACTGAGAGATGCTGTCGACTTTCTGTTCGCTTCATaGCTGGAGAACCACAGGGTGACTGTGCAGATGAAGAGGCATGGG +
Preference number: 5 (lower is better)
Translates to: QPIPLRDAVDFLFAS*LENHRVTVQMKRHG
Trigger: CCCATGCCTCTTCATCTGCACAGTCACCCTGTGGTTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGGAATTGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 90 bp CTGCCTAAGTCTTCGGATCTTGGCTTTAGCATCAGCCAATTCCACTaGGAGATGCTGTCGACTTTCTGTTCGCTTCATGCCTGGAGAACC +
Preference number: 5 (lower is better)
Translates to: LPKSSDLGFSISQFH*EMLSTFCSLHAWRT
Trigger: GGTTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGGAATTGGCTGATGCTAAAGCCAAGATCCGAAGACTTAGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 90 bp AAGCTTGGCATTCTGTGTCTGAAGCGTGGTATTCTGCTCCTGCAATaGCACGGTCTGCCTCTGCAGTGCAAGAATCTGAGCCTGCAAATT +
Preference number: 5 (lower is better)
Translates to: KLGILCLKRGILLLQ*HGLPLQCKNLSLQI
Trigger: AATTTGCAGGCTCAGATTCTTGCACTGCAGAGGCAGACCGTGTCATTGCAGGAGCAGAATACCACGCTTCAGACACAGAATGCCAAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS TCA 90 bp AGTTGTCCGTCTATCATAGAAGTCCCCTGGAGTCTTTCCACTTACTaGCCTGGCCAGGGTACAGCTAACTGGCTTGTCTTTCCCCAGAAA +
Preference number: 5 (lower is better)
Translates to: SCPSIIEVPWSLSTY*PGQGTANWLVFPQK
Trigger: TTTCTGGGGAAAGACAAGCCAGTTAGCTGTACCCTGGCCAGGTCAGTAAGTGGAAAGACTCCAGGGGACTTCTATGATAGACGGACAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS GCA 90 bp AGTCTTCGGATCTTGGCTTTAGCATCAGCCAATTCCACTGAGAGATaGTGTCGACTTTCTGTTCGCTTCATGCCTGGAGAACCACAGGGT +
Preference number: 5 (lower is better)
Translates to: SLRILALASANSTER*CRLSVRFMPGEPQG
Trigger: ACCCTGTGGTTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGGAATTGGCTGATGCTAAAGCCAAGATCCGAAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CCA 90 bp TGCACCAGGTCATTCATGGTGCTGCTCTTCTTGGTCCCCAGGGTTTaGCCATCTTCTAAAGAGTTTGATCCTACTGAAGAGCTGTCTTGG +
Preference number: 5 (lower is better)
Translates to: CTRSFMVLLFLVPRV*PSSKEFDPTEELSW
Trigger: CCAAGACAGCTCTTCAGTAGGATCAAACTCTTTAGAAGATGGCCAAACCCTGGGGACCAAGAAGAGCAGCACCATGAATGACCTGGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
CDS CCA 90 bp GTGTCTTCAGAATGTGTTGGCATGTCAGAGGACCACTGCTGTAAATaGTACTCACTAGATGCTGTAGTGCTGCTGCTACCAGCAGTAGGT +
Preference number: 5 (lower is better)
Translates to: VSSECVGMSEDHCCK*YSLDAVVLLLPAVG
Trigger: ACCTACTGCTGGTAGCAGCAGCACTACAGCATCTAGTGAGTACCATTTACAGCAGTGGTCCTCTGACATGCCAACACATTCTGAAGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAATGGTGCTGCTCTTCTaGGTCCCCAGGGTTTGGCCA +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALMVLLF*VPRVWP
Trigger: TGGCCAAACCCTGGGGACCAAGAAGAGCAGCACCAT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS TCA 90 bp GAACCACAGGGTGACTGTGCAGATGAAGAGGCATGGGGTAGGAAATaGACACCATCTCGCTCTTCTGAGAGTTCTACAATAGTCTCTGAA +
Preference number: 5 (lower is better)
Translates to: EPQGDCADEEAWGRK*TPSRSSESSTIVSE
Trigger: TTCAGAGACTATTGTAGAACTCTCAGAAGAGCGAGATGGTGTTCATTTCCTACCCCATGCCTCTTCATCTGCACAGTCACCCTGTGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS GCA 90 bp GACTCAGATGTGTCTTCAGAATGTGTTGGCATGTCAGAGGACCACTaGTGTAAATGGTACTCACTAGATGCTGTAGTGCTGCTGCTACCA +
Preference number: 5 (lower is better)
Translates to: DSDVSSECVGMSEDH*CKWYSLDAVVLLLP
Trigger: TGGTAGCAGCAGCACTACAGCATCTAGTGAGTACCATTTACAGCAGTGGTCCTCTGACATGCCAACACATTCTGAAGACACATCTGAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS CCA 90 bp AGTCTTTTCAGTGCAACCATGCTGCTCTTCTTGGTCCCCAGGGTTTaGCCATCTTCTAAAGAGTTTGATCCTACTGAAGAGCTGTCTTGG +
Preference number: 5 (lower is better)
Translates to: SLFSATMLLFLVPRV*PSSKEFDPTEELSW
Trigger: CCAAGACAGCTCTTCAGTAGGATCAAACTCTTTAGAAGATGGCCAAACCCTGGGGACCAAGAAGAGCAGCATGGTTGCACTGAAAAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTACTTTCTCGGCCCCACTaGTCATCTTCTCCAGAGACT +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALLSRPH*SSSPET
Trigger: AGTCTCTGGAGAAGATGACAAGTGGGGCCGAGAAAG...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS TCA 90 bp GCCTCAGCACTAATCTGGGAGCGCTGCCGTAAGGAAGACACTGTTTaGTTCAGATGTTCATTTTCCTGCTCCAATATTTTAATCTGCCTC +
Preference number: 5 (lower is better)
Translates to: ASALIWERCRKEDTV*FRCSFSCSNILICL
Trigger: GAGGCAGATTAAAATATTGGAGCAGGAAAATGAACATCTGAATCAAACAGTGTCTTCCTTACGGCAGCGCTCCCAGATTAGTGCTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 90 bp AGCAGACTTCAGGGTGCCATGTTTAGAGATCAGAGACTCATACTCTaGAGCTTGCCGCTCATGAAGAAGTTCCAGCTTTTCGTGATCTTT +
Preference number: 5 (lower is better)
Translates to: SRLQGAMFRDQRLIL*SLPLMKKFQLFVIF
Trigger: AAAGATCACGAAAAGCTGGAACTTCTTCATGAGCGGCAAGCTTCAGAGTATGAGTCTCTGATCTCTAAACATGGCACCCTGAAGTCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS TCA 90 bp TGTAGAGTAACAACTTCACTTCCTGGGGAGCCAGCTTTCATCTTGTaGTGGGCTCGACTCTCTATTGTTTCAGATATTTTGTGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: CRVTTSLPGEPAFIL*WARLSIVSDILCWS
Trigger: GCTCCAGCACAAAATATCTGAAACAATAGAGAGTCGAGCCCATCACAAGATGAAAGCTGGCTCCCCAGGAAGTGAAGTTGTTACTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATGCTGTCTTGGCTGTCTaGATGGGGCAGCTGAAGAAA +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHAVLAV*MGQLKK
Trigger: TTTCTTCAGCTGCCCCATCAAGACAGCCAAGACAGC...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAGCTTTGTGGCCTGCTTaGGATATTAACTGCACCTGC +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALALWPA*DINCTC
Trigger: GCAGGTGCAGTTAATATCCAAAGCAGGCCACAAAGC...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTATCCACTGCTGTGGCTTaGTGGCCTGCTTTGGATATT +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALSTAVA*WPALDI
Trigger: AATATCCAAAGCAGGCCACAAAGCCACAGCAGTGGA...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS CCA 90 bp TGTTTGTTATCTTTCTGTGCAGTTTTATCCAAAGAGGCAAAGGTCTaGCCAGTTATTCTAGTGAGTGGTGACTTGGGAGGTAACCCACTT +
Preference number: 5 (lower is better)
Translates to: CLLSFCAVLSKEAKV*PVILVSGDLGGNPL
Trigger: AAGTGGGTTACCTCCCAAGTCACCACTCACTAGAATAACTGGCCAGACCTTTGCCTCTTTGGATAAAACTGCACAGAAAGATAACAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATCAACTTTTAGGATTTaGGAAGTGCTGCCTGCTGCG +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRSTFRI*EVLPAA
Trigger: CGCAGCAGGCAGCACTTCCAAAATCCTAAAAGTTGA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAAGCGTTCTGTCTTCTaGAAAGAGGCTCTCATGAGC +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHKRSVF*KEALMS
Trigger: GCTCATGAGAGCCTCTTTCAAGAAGACAGAACGCTT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATTGCTTGCTTCTCTGCTaGCAGCGTAGCATTGTTTCT +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHCLLLC*QRSIVS
Trigger: AGAAACAATGCTACGCTGCAAGCAGAGAAGCAAGCA...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS CCA 90 bp GAGTCCGCAGTGCTCCGGAGCTCTTCTACGGTTTTCGTCAGACTCTaGTTTTCCATTTCCAACTTTAATAACTTACTTGATGTTAATTCA +
Preference number: 5 (lower is better)
Translates to: ESAVLRSSSTVFVRL*FSISNFNNLLDVNS
Trigger: TGAATTAACATCAAGTAAGTTATTAAAGTTGGAAATGGAAAACCAGAGTCTGACGAAAACCGTAGAAGAGCTCCGGAGCACTGCGGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp ACGAACAGGAGCATCATTCTCAACTTTTCAACTGAGGTTGTGGAAAACCTGAGACGACTTAGGATTAATTaGGAGCATGACCTGGTTCAA +
Preference number: 5 (lower is better)
Translates to: TNRSIILNFSTEVVENLRRLRIN*EHDLVQ
Trigger: TTGAACCAGGTCATGCTCCAAATTAATCCTAAGTCG...TCTCAGGTTTTCCACAACCTCAGTTGAAAAGTTGAGAATGATGCTCCTGTTCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109477.2
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTTAGAGTAATCCAGTaGCCTCTCCTTCTAGGAGGA +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRFRVIQ*PLLLGG
Trigger: TCCTCCTAGAAGGAGAGGCAACTGGATTACTCTAAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTATTAACCAACTGCTaGGATCGGAAGGCTGCAGAA +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRLLTNC*DRKAAE
Trigger: TTCTGCAGCCTTCCGATCCAAGCAGTTGGTTAATAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATTAACTGCACCTGCTTaGACTTCATGGAGTGAAGCA +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRLTAPA*TSWSEA
Trigger: TGCTTCACTCCATGAAGTCAAAGCAGGTGCAGTTAA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATCGACTTAGGATTAATTaGGAGCATGACCTGGTTCAA +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHRLRIN*EHDLVQ
Trigger: TTGAACCAGGTCATGCTCCAAATTAATCCTAAGTCG...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATATTATGAGTTACCTCTaGAATGTGTGCAGCAACTGC +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHIMSYL*NVCSNC
Trigger: GCAGTTGCTGCACACATTCAAGAGGTAACTCATAAT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAATTCATGTTCTCTTGTaGCAGCCTCTTCAATTCCAC +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRIHVLL*QPLQFH
Trigger: GTGGAATTGAAGAGGCTGCAACAAGAGAACATGAAT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATCTAATTCATGTAGTTaGTCAGAACGAGCCCGAGTT +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRSNSCS*SERARV
Trigger: AACTCGGGCTCGTTCTGACAAACTACATGAATTAGA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATCTTGCTTTCCATATTTaGCTCCAGCAGTGTTCTGTT +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHLAFHI*LQQCSV
Trigger: AACAGAACACTGCTGGAGCAAAATATGGAAAGCAAG...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTACATCTTCTAAAGAGTTaGATCCTACTGAAGAGCTGT +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALHLLKS*ILLKSC
Trigger: ACAGCTCTTCAGTAGGATCAAACTCTTTAGAAGATG...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCAAGGCTGGCTGGTCTaGAAGCATGAACTCTTGATC +
Preference number: 5 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFQGWLV*KHELLI
Trigger: GATCAAGAGTTCATGCTTCAAGACCAGCCAGCCTTG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGACAAATTCATGTTCTCTaGTTGCAGCCTCTTCAATTC +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRQIHVL*LQPLQF
Trigger: GAATTGAAGAGGCTGCAACAAGAGAACATGAATTTG...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAAGTTGTTCCAGTCTTTaGCTAGATATTTTCAGTTCC +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALSCSSL*LDIFSS
Trigger: GGAACTGAAAATATCTAGCAAAAGACTGGAACAACT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAAAGTTCGTGGCGCAATaGCTGATTGTAATTTGTAGA +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRKFVAQ*LIVICR
Trigger: TCTACAAATTACAATCAGCAATTGCGCCACGAACTT...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGAGCTTGCAGCGTAGCATaGTTTCTTTCTACTTCAATT +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRACSVA*FLSTSI
Trigger: AATTGAAGTAGAAAGAAACAATGCTACGCTGCAAGC...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGCATATCTTATGAGCTGCACTTCCTTTGCAGTGCATCCAAACAATTGGCTCTAATTGAGGTAAGCTTGTaGCTTTCTTCCAAAAACTGT +
Preference number: 5 (lower is better)
Translates to: CISYELHFLCSASKQLALIEVSL*LSSKNC
Trigger: ACAGTTTTTGGAAGAAAGCAACAAGCTTACCTCAAT...TAGAGCCAATTGTTTGGATGCACTGCAAAGGAAGTGCAGCTCATAAGATATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp TGTCTCGTGAACTCTTTGGTAACCACCAACTCAGAAAACCTTGAACCAAAACATAAGGATTGCTATCTTTaGATTGTCTTGACACAGAGG +
Preference number: 5 (lower is better)
Translates to: CLVNSLVTTNSENLEPKHKDCYL*IVLTQR
Trigger: CCTCTGTGTCAAGACAATCAAAAGATAGCAATCCTT...ATGTTTTGGTTCAAGGTTTTCTGAGTTGGTGGTTACCAAAGAGTTCACGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATGTCACTTCCATCCATaGCAGATCAAATACATTTTC +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRCHFHP*QIKYIF
Trigger: GAAAATGTATTTGATCTGCAATGGATGGAAGTGACA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCTAAGTCTTCGGATCTaGGCTTTAGCATCAGCCAAT +
Preference number: 5 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFLSLRI*ALASAN
Trigger: ATTGGCTGATGCTAAAGCCAAGATCCGAAGACTTAG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTCACCACAAAGCTTCTaGTACTCTGAAGCTACCACT +
Preference number: 5 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFSPQSF*YSEATT
Trigger: AGTGGTAGCTTCAGAGTACAAGAAGCTTTGTGGTGA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp ATAAAAACCATCTCAAACAATGGTATCTTGTCGTGCATGGACTCCTGTGACAGATGTATTGAGGTAAGCTaGTTGCTTTCTTCCAAAAAC +
Preference number: 5 (lower is better)
Translates to: IKTISNNGILSCMDSCDRCIEVS*LLSSKN
Trigger: GTTTTTGGAAGAAAGCAACAAGCTTACCTCAATACA...TCTGTCACAGGAGTCCATGCACGACAAGATACCATTGTTTGAGATGGTTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS GCA 90 bp AAATTCATGTTCTCTTGTTGCAGCCTCTTCAATTCCACTTCTATTTaGTCAAGTTCTTGTTTACAGTCCAGTAACTGCTCAGTCTTTTCT +
Preference number: 5 (lower is better)
Translates to: KFMFSCCSLFNSTSI*SSSCLQSSNCSVFS
Trigger: AGAAAAGACTGAGCAGTTACTGGACTGTAAACAAGAACTTGAGCAAATAGAAGTGGAATTGAAGAGGCTGCAACAAGAGAACATGAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CCA 90 bp ATTTCCAACTTTAATAACTTACTTGATGTTAATTCATTTACCTCATaGCCCAAGGACTTCTGTGGTGCTTCAGCAAGTTCACTAGTTCTG +
Preference number: 5 (lower is better)
Translates to: ISNFNNLLDVNSFTS*PKDFCGASASSLVL
Trigger: CAGAACTAGTGAACTTGCTGAAGCACCACAGAAGTCCTTGGGCCATGAGGTAAATGAATTAACATCAAGTAAGTTATTAAAGTTGGAAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTTCTCCTTTTACCCGTaGAAATATCATCAGGGACCT +
Preference number: 5 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFFSFYP*KYHQGP
Trigger: AGGTCCCTGATGATATTTCAACGGGTAAAAGGAGAA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS TCA 90 bp CTTAGATGTGACACCATATTCTTTAAGAGTGGTTCTATGTCTTCCTaGGACATATCTGTCACTTCCATCCATTGCAGATCAAATACATTT +
Preference number: 5 (lower is better)
Translates to: LRCDTIFFKSGSMSS*DISVTSIHCRSNTF
Trigger: AAATGTATTTGATCTGCAATGGATGGAAGTGACAGATATGTCTCAGGAAGACATAGAACCACTCTTAAAGAATATGGTGTCACATCTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 90 bp AACTCACACTGGTTATTTAGCTTGGTAGATGTGATATCTAGTTGCTaGTACTGCTCCTTTAGCTTTGAAAATTCAGCTTCTAATCTTGTT +
Preference number: 5 (lower is better)
Translates to: NSHWLFSLVDVISSC*YCSFSFENSASNLV
Trigger: AACAAGATTAGAAGCTGAATTTTCAAAGCTAAAGGAGCAGTATCAGCAACTAGATATCACATCTACCAAGCTAAATAACCAGTGTGAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS-3UTR CAA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCTTTGATTCCAAAAGTTaGTACCTACTGTCATCAGTG +
Preference number: 5 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFFDSKS*YLLSSV
Trigger: CACTGATGACAGTAGGTACAAACTTTTGGAATCAAA...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS-3UTR CAA 90 bp AAAAGGCTGACATGCCAGAACAATTTCCTCTGTATCTTGATATATAGTACATTCCACTGGTTATTTAGCTaGGTAGATGTGATATCTAGT +
Preference number: 5 (lower is better)
Translates to: KRLTCQNNFLCILIYSTFHWLFS*VDVISS
Trigger: ACTAGATATCACATCTACCAAGCTAAATAACCAGTG...GAATGTACTATATATCAAGATACAGAGGAAATTGTTCTGGCATGTCAGCCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS GCA 72 bp GGATTTTGGAAGTGCTGCCTGCTGCGGAGTCCGCAGTaGTCCGGAGCTCTTCTACGGTTTTCGTCAGACTCT +
Preference number: 6 (lower is better)
Translates to: GFWKCCLLRSPQ*SGALLRFSSDS
Trigger: AGAGTCTGACGAAAACCGTAGAAGAGCTCCGGAGCACTGCGGACTCCGCAGCAGGCAGCACTTCCAAAATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS GCA 72 bp GCTCCTTGTTCTCTAGCTGGAGCTGGGCCATTCTCATaGTCGCACACTTCAGAGACTCCACGCTCCTTCGCA +
Preference number: 6 (lower is better)
Translates to: APCSLAGAGPFS*SHTSETPRSFA
Trigger: TGCGAAGGAGCGTGGAGTCTCTGAAGTGTGCGAGCATGAGAATGGCCCAGCTCCAGCTAGAGAACAAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS GCA 72 bp CCACTGAGAGATGCTGTCGACTTTCTGTTCGCTTCATaGCTGGAGAACCACAGGGTGACTGTGCAGATGAAG +
Preference number: 6 (lower is better)
Translates to: PLRDAVDFLFAS*LENHRVTVQMK
Trigger: CTTCATCTGCACAGTCACCCTGTGGTTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CAA 90 bp TGCTGCTCTTCTTGGTCCCCAGGGTTTGGCCATCTTCTAAAGAGTTaGATCCTACTGAAGAGCTGTCTTGGCTGTCTTGATGGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: CCSSWSPGFGHLLKS*ILLKSCLGCLDGAA
Trigger: AGCTGCCCCATCAAGACAGCCAAGACAGCTCTTCAGTAGGATCAAACTCTTTAGAAGATGGCCAAACCCTGGGGACCAAGAAGAGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS CAA 72 bp CCACTTACTGACCTGGCCAGGGTACAGCTAACTGGCTaGTCTTTCCCCAGAAAGTCGGAAGACACAGACAAA +
Preference number: 6 (lower is better)
Translates to: PLTDLARVQLTG*SFPRKSEDTDK
Trigger: TTTGTCTGTGTCTTCCGACTTTCTGGGGAAAGACAAGCCAGTTAGCTGTACCCTGGCCAGGTCAGTAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS CCA 72 bp TTTCAACCTGAAGCTTGGCATTCTGTGTCTGAAGCGTaGTATTCTGCTCCTGCAATGACACGGTCTGCCTCT +
Preference number: 6 (lower is better)
Translates to: FQPEAWHSVSEA*YSAPAMTRSAS
Trigger: AGAGGCAGACCGTGTCATTGCAGGAGCAGAATACCACGCTTCAGACACAGAATGCCAAGCTTCAGGTTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS CCA 72 bp GCAGCTGAAGAAATCCTTCACTGGAGTCTGAGCGGGTaGGTGTTAGTGTTAGAGATTTCTGACGTTCCCGAT +
Preference number: 6 (lower is better)
Translates to: AAEEILHWSLSG*VLVLEISDVPD
Trigger: ATCGGGAACGTCAGAAATCTCTAACACTAACACCCACCCGCTCAGACTCCAGTGAAGGATTTCTTCAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS TCA 72 bp CTGTCTTTAACTTTCAGGAGCTCTCTAGTCGCTTCTTaGCTTTCTCGGCCCCACTTGTCATCTTCTCCAGAG +
Preference number: 6 (lower is better)
Translates to: LSLTFRSSLVAS*LSRPHLSSSPE
Trigger: CTCTGGAGAAGATGACAAGTGGGGCCGAGAAAGTCAAGAAGCGACTAGAGAGCTCCTGAAAGTTAAAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS TCA 72 bp TCTATCATAGAAGTCCCCTGGAGTCTTTCCACTTACTaGCCTGGCCAGGGTACAGCTAACTGGCTTGTCTTT +
Preference number: 6 (lower is better)
Translates to: SIIEVPWSLSTY*PGQGTANWLVF
Trigger: AAAGACAAGCCAGTTAGCTGTACCCTGGCCAGGTCAGTAAGTGGAAAGACTCCAGGGGACTTCTATGATAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS CCA 72 bp GAATGTGTTGGCATGTCAGAGGACCACTGCTGTAAATaGTACTCACTAGATGCTGTAGTGCTGCTGCTACCA +
Preference number: 6 (lower is better)
Translates to: ECVGMSEDHCCK*YSLDAVVLLLP
Trigger: TGGTAGCAGCAGCACTACAGCATCTAGTGAGTACCATTTACAGCAGTGGTCCTCTGACATGCCAACACATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS CAA 90 bp GGAGTCTTTCCACTTACTGACCTGGCCAGGGTACAGCTAACTGGCTaGTCTTTCCCCAGAAAGTCGGAAGACACAGACAAACTTTTCATT +
Preference number: 6 (lower is better)
Translates to: GVFPLTDLARVQLTG*SFPRKSEDTDKLFI
Trigger: AATGAAAAGTTTGTCTGTGTCTTCCGACTTTCTGGGGAAAGACAAGCCAGTTAGCTGTACCCTGGCCAGGTCAGTAAGTGGAAAGACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS TCA 72 bp GGTGACTGTGCAGATGAAGAGGCATGGGGTAGGAAATaGACACCATCTCGCTCTTCTGAGAGTTCTACAATA +
Preference number: 6 (lower is better)
Translates to: GDCADEEAWGRK*TPSRSSESSTI
Trigger: TATTGTAGAACTCTCAGAAGAGCGAGATGGTGTTCATTTCCTACCCCATGCCTCTTCATCTGCACAGTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 72 bp CAGGGTGCCATGTTTAGAGATCAGAGACTCATACTCTaGAGCTTGCCGCTCATGAAGAAGTTCCAGCTTTTC +
Preference number: 6 (lower is better)
Translates to: QGAMFRDQRLIL*SLPLMKKFQLF
Trigger: GAAAAGCTGGAACTTCTTCATGAGCGGCAAGCTTCAGAGTATGAGTCTCTGATCTCTAAACATGGCACCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS GCA 72 bp ATCTTGGCTTTAGCATCAGCCAATTCCACTGAGAGATaGTGTCGACTTTCTGTTCGCTTCATGCCTGGAGAA +
Preference number: 6 (lower is better)
Translates to: ILALASANSTER*CRLSVRFMPGE
Trigger: TTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGGAATTGGCTGATGCTAAAGCCAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS GCA 72 bp GTGTCTTCAGAATGTGTTGGCATGTCAGAGGACCACTaGTGTAAATGGTACTCACTAGATGCTGTAGTGCTG +
Preference number: 6 (lower is better)
Translates to: VSSECVGMSEDH*CKWYSLDAVVL
Trigger: CAGCACTACAGCATCTAGTGAGTACCATTTACAGCAGTGGTCCTCTGACATGCCAACACATTCTGAAGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS CCA 72 bp ACTTTCTCGGCCCCACTTGTCATCTTCTCCAGAGACTaGAATGGAACTCTGTACCATCCTTTCTTCATCTTG +
Preference number: 6 (lower is better)
Translates to: TFSAPLVIFSRD*NGTLYHPFFIL
Trigger: CAAGATGAAGAAAGGATGGTACAGAGTTCCATTCCAGTCTCTGGAGAAGATGACAAGTGGGGCCGAGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS CAA 90 bp AACTGCTCAGTCTTTTCTTCCAATTCCTGCCTAAGTCTTCGGATCTaGGCTTTAGCATCAGCCAATTCCACTGAGAGATGCTGTCGACTT +
Preference number: 6 (lower is better)
Translates to: NCSVFSSNSCLSLRI*ALASANSTERCCRL
Trigger: AAGTCGACAGCATCTCTCAGTGGAATTGGCTGATGCTAAAGCCAAGATCCGAAGACTTAGGCAGGAATTGGAAGAAAAGACTGAGCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CAA 90 bp AGTCTCATGATCATGAAGCAGACTGAAATCTCCACTGCTGTGGCTTaGTGGCCTGCTTTGGATATTAACTGCACCTGCTTTGACTTCATG +
Preference number: 6 (lower is better)
Translates to: SLMIMKQTEISTAVA*WPALDINCTCFDFM
Trigger: CATGAAGTCAAAGCAGGTGCAGTTAATATCCAAAGCAGGCCACAAAGCCACAGCAGTGGAGATTTCAGTCTGCTTCATGATCATGAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS CAA 90 bp TGTAGGTTTCCCTGCAGAGCTGATGGTGTAGGCATCTTCAGTCTTTaGAGGACCAGTTCTCAAAAATTCAGGCTTAGTTGTCCGTCTATC +
Preference number: 6 (lower is better)
Translates to: CRFPCRADGVGIFSL*RTSSQKFRLSCPSI
Trigger: GATAGACGGACAACTAAGCCTGAATTTTTGAGAACTGGTCCTCAAAAGACTGAAGATGCCTACACCATCAGCTCTGCAGGGAAACCTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS CAA 90 bp TCCAAAGAGGCAAAGGTCTGGCCAGTTATTCTAGTGAGTGGTGACTaGGGAGGTAACCCACTTATGTTACTAACTAGTTCTGTGTTCAGG +
Preference number: 6 (lower is better)
Translates to: SKEAKVWPVILVSGD*GGNPLMLLTSSVFR
Trigger: CCTGAACACAGAACTAGTTAGTAACATAAGTGGGTTACCTCCCAAGTCACCACTCACTAGAATAACTGGCCAGACCTTTGCCTCTTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS CAA 72 bp CCCTGCAGAGCTGATGGTGTAGGCATCTTCAGTCTTTaGAGGACCAGTTCTCAAAAATTCAGGCTTAGTTGT +
Preference number: 6 (lower is better)
Translates to: PCRADGVGIFSL*RTSSQKFRLSC
Trigger: ACAACTAAGCCTGAATTTTTGAGAACTGGTCCTCAAAAGACTGAAGATGCCTACACCATCAGCTCTGCAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS CAA 72 bp GGGTATAAACGGACTCAGATGTGTCTTCAGAATGTGTaGGCATGTCAGAGGACCACTGCTGTAAATGGTACT +
Preference number: 6 (lower is better)
Translates to: GYKRTQMCLQNV*ACQRTTAVNGT
Trigger: AGTACCATTTACAGCAGTGGTCCTCTGACATGCCAACACATTCTGAAGACACATCTGAGTCCGTTTATACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS CAA 90 bp ACTGCACCTGCTTTGACTTCATGGAGTGAAGCATTATTATTGCTATaGCTAGTGGATGTTCTGCCACTATCAAGGCTGGCTGGTCTTGAA +
Preference number: 6 (lower is better)
Translates to: TAPALTSWSEALLLL*LVDVLPLSRLAGLE
Trigger: TTCAAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACTAGCAATAGCAATAATAATGCTTCACTCCATGAAGTCAAAGCAGGTGCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS CAA 90 bp TGTTGCTCCCTAGACCTGCTTTTTGAATTTCTGCTCTCTTGTACTTaGTTCACATTAGATGCTGTAGTGCTGCTGCTACCAGCAGTAGGT +
Preference number: 6 (lower is better)
Translates to: CCSLDLLFEFLLSCT*FTLDAVVLLLPAVG
Trigger: ACCTACTGCTGGTAGCAGCAGCACTACAGCATCTAATGTGAACAAAGTACAAGAGAGCAGAAATTCAAAAAGCAGGTCTAGGGAGCAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS TCA 72 bp ACAACTTCACTTCCTGGGGAGCCAGCTTTCATCTTGTaGTGGGCTCGACTCTCTATTGTTTCAGATATTTTG +
Preference number: 6 (lower is better)
Translates to: TTSLPGEPAFIL*WARLSIVSDIL
Trigger: CAAAATATCTGAAACAATAGAGAGTCGAGCCCATCACAAGATGAAAGCTGGCTCCCCAGGAAGTGAAGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS GCA 72 bp AAGTTGCTTCAGTTGAGTTTTCAGTGCTTGCTTCTCTaGTTGCAGCGTAGCATTTGTTTTAAGTTCGTGGCG +
Preference number: 6 (lower is better)
Translates to: KLLQLSFQCLLL*LQRSICFKFVA
Trigger: CGCCACGAACTTAAAACAAATGCTACGCTGCAAGCAGAGAAGCAAGCACTGAAAACTCAACTGAAGCAACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123561.8
CDS CAA 72 bp TTGCTTCAGTTGAGTTTTCAGTGCTTGCTTCTCTGCTaGCAGCGTAGCATTTGTTTTAAGTTCGTGGCGCAA +
Preference number: 6 (lower is better)
Translates to: LLQLSFQCLLLC*QRSICFKFVAQ
Trigger: TTGCGCCACGAACTTAAAACAAATGCTACGCTGCAAGCAGAGAAGCAAGCACTGAAAACTCAACTGAAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123561.8
CDS CAA 72 bp GCAAAGGTCTGGCCAGTTATTCTAGTGAGTGGTGACTaGGGAGGTAACCCACTTATGTTACTAACTAGTTCT +
Preference number: 6 (lower is better)
Translates to: AKVWPVILVSGD*GGNPLMLLTSS
Trigger: AGAACTAGTTAGTAACATAAGTGGGTTACCTCCCAAGTCACCACTCACTAGAATAACTGGCCAGACCTTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS TCA 72 bp TGCAATGACACGGTCTGCCTCTGCAGTGCAAGAATCTaGGCCTGCAAATTATTATTTTGTGTTTCAAGTTGC +
Preference number: 6 (lower is better)
Translates to: CNDTVCLCSARI*ACKLLFCVSSC
Trigger: GCAACTTGAAACACAAAATAATAATTTGCAGGCTCAGATTCTTGCACTGCAGAGGCAGACCGTGTCATTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS GCA 72 bp GATTCCAAAAGTTTGTACCTACTGTCATCAGTGCTCTaGTCATCGTGTAGGAGCCGCTCTTTATTTAAACCT +
Preference number: 6 (lower is better)
Translates to: DSKSLYLLSSVL*SSCRSRSLFKP
Trigger: AGGTTTAAATAAAGAGCGGCTCCTACACGATGAGCAGAGCACTGATGACAGTAGGTACAAACTTTTGGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CAA 90 bp GGTCTGCCTCTGCAGTGCAAGAATCTGAGCCTGCAAATTATTATTTaGTGTTTCAAGTTGCTTCAGTTGAGTTTTCAGTGCTTGCTTCTC +
Preference number: 6 (lower is better)
Translates to: GLPLQCKNLSLQIII*CFKLLQLSFQCLLL
Trigger: GAGAAGCAAGCACTGAAAACTCAACTGAAGCAACTTGAAACACAAAATAATAATTTGCAGGCTCAGATTCTTGCACTGCAGAGGCAGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS GCA 72 bp TCACACTGCTTGCACGAGGTAAAGTGGCATAAGGATTaGTATCTTTTGATTGTCTTGACACAGAGGTTTCTT +
Preference number: 6 (lower is better)
Translates to: SHCLHEVKWHKD*YLLIVLTQRFL
Trigger: AAGAAACCTCTGTGTCAAGACAATCAAAAGATAGCAATCCTTATGCCACTTTACCTCGTGCAAGCAGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS GCA 72 bp TTTGATTCCAAAAGTTTGTACCTGTCATCAGTGCTCTaGTCATCGTGTAGGAGCCGCTCTTTATTTAAACCT +
Preference number: 6 (lower is better)
Translates to: FDSKSLYLSSVL*SSCRSRSLFKP
Trigger: AGGTTTAAATAAAGAGCGGCTCCTACACGATGAGCAGAGCACTGATGACAGGTACAAACTTTTGGAATCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155854.8
CDS CCA 72 bp GTGCTCCGGAGCTCTTCTACGGTTTTCGTCAGACTCTaGTTTTCCATTTCCAACTTTAATAACTTACTTGAT +
Preference number: 6 (lower is better)
Translates to: VLRSSSTVFVRL*FSISNFNNLLD
Trigger: ATCAAGTAAGTTATTAAAGTTGGAAATGGAAAACCAGAGTCTGACGAAAACCGTAGAAGAGCTCCGGAGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CAA 72 bp CTAGACCTGCTTTTTGAATTTCTGCTCTCTTGTACTTaGTTCACATTAGATGCTGTAGTGCTGCTGCTACCA +
Preference number: 6 (lower is better)
Translates to: LDLLFEFLLSCT*FTLDAVVLLLP
Trigger: TGGTAGCAGCAGCACTACAGCATCTAATGTGAACAAAGTACAAGAGAGCAGAAATTCAAAAAGCAGGTCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040182.13
CDS TCA 72 bp GACACCATATTCTTTAAGAGTGGTTCTATGTCTTCCTaGGACATATCTGTCACTTCCATCCATTGCAGATCA +
Preference number: 6 (lower is better)
Translates to: DTIFFKSGSMSS*DISVTSIHCRS
Trigger: TGATCTGCAATGGATGGAAGTGACAGATATGTCTCAGGAAGACATAGAACCACTCTTAAAGAATATGGTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 72 bp TCTTCAAGGTCTTTATGTTCCACTTCAAGATTTTTGTaGGCAGACTTCAGGGTGCCATGTTTAGAGATCAGA +
Preference number: 6 (lower is better)
Translates to: SSRSLCSTSRFL*ADFRVPCLEIR
Trigger: TCTGATCTCTAAACATGGCACCCTGAAGTCTGCTCACAAAAATCTTGAAGTGGAACATAAAGACCTTGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS GCA 72 bp TTCTCTTGTTGCAGCCTCTTCAATTCCACTTCTATTTaGTCAAGTTCTTGTTTACAGTCCAGTAACTGCTCA +
Preference number: 6 (lower is better)
Translates to: FSCCSLFNSTSI*SSSCLQSSNCS
Trigger: TGAGCAGTTACTGGACTGTAAACAAGAACTTGAGCAAATAGAAGTGGAATTGAAGAGGCTGCAACAAGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS GCA 72 bp TCTATTTGCTCAAGTTCTTGTTTACAGTCCAGTAACTaGTCAGTCTTTTCTTCCAATTCCTGCCTAAGTCTT +
Preference number: 6 (lower is better)
Translates to: SICSSSCLQSSN*SVFSSNSCLSL
Trigger: AAGACTTAGGCAGGAATTGGAAGAAAAGACTGAGCAGTTACTGGACTGTAAACAAGAACTTGAGCAAATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CCA 72 bp TGTAGTTTGTCAGAACGAGCCCGAGTTCCTTCTAGTTaGTCTTCCAGCATAGTTTTTGTTTCTAATAAAACT +
Preference number: 6 (lower is better)
Translates to: CSLSERARVPSS*SSSIVFVSNKT
Trigger: AGTTTTATTAGAAACAAAAACTATGCTGGAAGACCAACTAGAAGGAACTCGGGCTCGTTCTGACAAACTACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CCA 72 bp TCTAAGGAAGACTGCTGGATTAGAAGCTGTGCATTCTaGTTCATAAGTGAAGTACTTTGTGAATTAAGGGTA +
Preference number: 6 (lower is better)
Translates to: SKEDCWIRSCAF*FISEVLCELRV
Trigger: TACCCTTAATTCACAAAGTACTTCACTTATGAACCAGAATGCACAGCTTCTAATCCAGCAGTCTTCCTTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000155854.8
ENSMUST00000239407.2
CDS CCA 72 bp GATCGCTATCTTCAGAGAACTGTGTCTTACTGTGACTaGGGTTCTGACTATCAGAAAAATGTTTGTTATCTT +
Preference number: 6 (lower is better)
Translates to: DRYLQRTVSYCD*GSDYQKNVCYL
Trigger: AAGATAACAAACATTTTTCTGATAGTCAGAACCCCAGTCACAGTAAGACACAGTTCTCTGAAGATAGCGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239407.2
CDS CAA 90 bp TCACACTGCTTGCACGAGGTAAAGTGGCATAAGGATTGCTATCTTTaGATTGTCTTGACACAGAGGTTTCTTTTACTAGTTTTATCTTTC +
Preference number: 6 (lower is better)
Translates to: SHCLHEVKWHKDCYL*IVLTQRFLLLVLSF
Trigger: GAAAGATAAAACTAGTAAAAGAAACCTCTGTGTCAAGACAATCAAAAGATAGCAATCCTTATGCCACTTTACCTCGTGCAAGCAGTGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 72 bp TTGGATATTAACTGCACCTGCTTTGACTTCATGGAGTaGAGCATTATTATTGCTATTGCTAGTGGATGTTCT +
Preference number: 6 (lower is better)
Translates to: LDINCTCFDFME*SIIIAIASGCS
Trigger: AGAACATCCACTAGCAATAGCAATAATAATGCTTCACTCCATGAAGTCAAAGCAGGTGCAGTTAATATCCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS CCA 72 bp TCTAAATTTCCTTTAAGTTGGCTGAGCAACTCACACTaGTTATTTAGCTTGGTAGATGTGATATCTAGTTGC +
Preference number: 6 (lower is better)
Translates to: SKFPLSWLSNSH*LFSLVDVISSC
Trigger: GCAACTAGATATCACATCTACCAAGCTAAATAACCAGTGTGAGTTGCTCAGCCAACTTAAAGGAAATTTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS CAA 72 bp TTGCACGAGGTAAAGTGGCATAAGGATTGCTATCTTTaGATTGTCTTGACACAGAGGTTTCTTTTACTAGTT +
Preference number: 6 (lower is better)
Translates to: LHEVKWHKDCYL*IVLTQRFLLLV
Trigger: AACTAGTAAAAGAAACCTCTGTGTCAAGACAATCAAAAGATAGCAATCCTTATGCCACTTTACCTCGTGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS CAA 90 bp AATTTAGCCTTTAGTTGTAAATTCTCTTTTTCTAATTCATGTAGTTaGTCAGAACGAGCCCGAGTTCCTTCTAGTTGGTCTTCCAGCATA +
Preference number: 6 (lower is better)
Translates to: NLAFSCKFSFSNSCS*SERARVPSSWSSSI
Trigger: TATGCTGGAAGACCAACTAGAAGGAACTCGGGCTCGTTCTGACAAACTACATGAATTAGAAAAAGAGAATTTACAACTAAAGGCTAAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2
CDS TCA 72 bp TGGTTATTTAGCTTGGTAGATGTGATATCTAGTTGCTaGTACTGCTCCTTTAGCTTTGAAAATTCAGCTTCT +
Preference number: 6 (lower is better)
Translates to: WLFSLVDVISSC*YCSFSFENSAS
Trigger: AGAAGCTGAATTTTCAAAGCTAAAGGAGCAGTATCAGCAACTAGATATCACATCTACCAAGCTAAATAACCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000239407.2
CDS TCA 72 bp AGCAGTGTTCTGTTCTGTAGCATTAGTGTCTGGATCTaGTCAAGTAGATGTCGATTTTCTTCTTCTAAATTT +
Preference number: 6 (lower is better)
Translates to: SSVLFCSISVWI*SSRCRFSSSKF
Trigger: AAATTTAGAAGAAGAAAATCGACATCTACTTGATCAGATCCAGACACTAATGCTACAGAACAGAACACTGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040182.13
ENSMUST00000123561.8
ENSMUST00000140194.2
ENSMUST00000239407.2
CDS CAA 72 bp TTAACTTCTTCTGTACCTTGTTCAGAAAAGGGATTTTaGCCAATGATTAAGATATCTGGCAATGGCATCATA +
Preference number: 6 (lower is better)
Translates to: LTSSVPCSEKGF*PMIKISGNGII
Trigger: TATGATGCCATTGCCAGATATCTTAATCATTGGCAAAAATCCCTTTTCTGAACAAGGTACAGAAGAAGTTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040182.13
ENSMUST00000239407.2