RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC85A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032878

Ensembl transcript IDs: ENSMUST00000042534.15, ENSMUST00000093253.10, ENSMUST00000109502.9, ENSMUST00000140601.3, ENSMUST00000146385.9, ENSMUST00000160016.8

Found 302 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGGAAGATGTAGCAGCAGGAAATTGACTGCATCATATAGAGTCTaGGAATTAATGGAAGGATTGGGGGTAGTTTGTTTCAGATCAAGT +
Preference number: 1 (lower is better)
Translates to: EGRCSSRKLTASYRV*ELMEGLGVVCFRSS
Trigger: ACTTGATCTGAAACAAACTACCCCCAATCCTTCCATTAATTCTCAGACTCTATATGATGCAGTCAATTTCCTGCTGCTACATCTTCCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR CAA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTaGAGAATCCCGAAGAACCATGGTTGGCTAGCCCAAAATTGTATG +
Preference number: 2 (lower is better)
Translates to: GSFCQDLRYYSSLYV*RIPKNHGWLAQNCM
Trigger: CATACAATTTTGGGCTAGCCAACCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCCTTTGTATCGCTACTaGAGGATCTACTGCAAGCAC +
Preference number: 2 (lower is better)
Translates to: WYNAQHRKPHFTILLATSPLYRY*RIYCKH
Trigger: GTGCTTGCAGTAGATCCTGCAGTAGCGATACAAAGG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR CAA 90 bp AAAAATAAAGGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTaGTATGTCTTGAGAATCCCGAAGAACCATGGTTGGCTAGCCCAA +
Preference number: 2 (lower is better)
Translates to: KNKGSFCQDLRYYSS*YVLRIPKNHGWLAQ
Trigger: TTGGGCTAGCCAACCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCCTTTATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR TCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCTTTAGAAGGGAGATATaGGCAATGTACAATCACTCC +
Preference number: 2 (lower is better)
Translates to: EGASQPRLYAQKYFFISSFRREI*AMYNHS
Trigger: GGAGTGATTGTACATTGCTCATATCTCCCTTCTAAA...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR TCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATACATCTCAAGCAATCTaGAAAGAGTATTTAGCCTCA +
Preference number: 2 (lower is better)
Translates to: PRFASFAFRWREDVAAGNTSQAI*KEYLAS
Trigger: TGAGGCTAAATACTCTTTTCAGATTGCTTGAGATGT...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR TCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCTGTCACAGGCCTCTTaGACATTCATACAAGAAACG +
Preference number: 2 (lower is better)
Translates to: WYNAQHRKPHFTILLATSLSQAS*TFIQET
Trigger: CGTTTCTTGTATGAATGTTCAAGAGGCCTGTGACAG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR TCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGGAATGTCACATGAGCTaGCAAATTCCTACAGAGCTT +
Preference number: 2 (lower is better)
Translates to: RPEILFILVCLENPEEPWECHMS*QIPTEL
Trigger: AAGCTCTGTAGGAATTTGTCAGCTCATGTGACATTC...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATTATGGTCCAAAGACATaGCTTTATAAACAACTCATC +
Preference number: 2 (lower is better)
Translates to: PRFASFAFRWREDVAAGNYGPKT*LYKQLI
Trigger: GATGAGTTGTTTATAAAGGCATGTCTTTGGACCATA...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATAAGACATTAGATAGCTaGAGTGATATGCAAAGAAAG +
Preference number: 2 (lower is better)
Translates to: PRFASFAFRWREDVAAGNKTLDS*SDMQRK
Trigger: CTTTCTTTGCATATCACTGCAGCTATCTAATGTCTT...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR TCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTTTAGAAGGGAGATATaGGCAATGTACAATCACTCC +
Preference number: 2 (lower is better)
Translates to: VICKESFCFLGQCKTLKFFRREI*AMYNHS
Trigger: GGAGTGATTGTACATTGCTCATATCTCCCTTCTAAA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR TCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCACATCTCAAGCAATCTaGAAAGAGTATTTAGCCTCA +
Preference number: 2 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRITSQAI*KEYLAS
Trigger: TGAGGCTAAATACTCTTTTCAGATTGCTTGAGATGT...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTCCAACCCAGGTTGTATaGTCAAAAATACTTTTTCAT +
Preference number: 2 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSPTQVV*SKILFH
Trigger: ATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGG...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR GCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGCAATCTTTCCTCAACTaGTATATATATGAGGGAGCT +
Preference number: 2 (lower is better)
Translates to: RPEILFILVCLENPEEPWQSFLN*YIYEGA
Trigger: AGCTCCCTCATATATATAGCAGTTGAGGAAAGATTG...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCATAGCTGCAGTGATATaGAAAGAAAGCTTCTGTTTC +
Preference number: 2 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIIAAVI*KESFCF
Trigger: GAAACAGAAGCTTTCTTTGCATATCACTGCAGCTAT...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTAAGACATTAGATAGCTaGAGTGATATGCAAAGAAAG +
Preference number: 2 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSKTLDS*SDMQRK
Trigger: CTTTCTTTGCATATCACTGCAGCTATCTAATGTCTT...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR TCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTTTAGAAGGGAGATATaGGCAATGTACAATCACTCC +
Preference number: 2 (lower is better)
Translates to: HILILYIYTTRQKTSKAGFRREI*AMYNHS
Trigger: GGAGTGATTGTACATTGCTCATATCTCCCTTCTAAA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR TCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAGCATCATATAGAGTCTaGGAATTAATGGAAGGATTG +
Preference number: 2 (lower is better)
Translates to: LIETIFVNPPNHAKISPSASYRV*ELMEGL
Trigger: CAATCCTTCCATTAATTCTCAGACTCTATATGATGC...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCCAACCCAGGTTGTATaGTCAAAAATACTTTTTCAT +
Preference number: 2 (lower is better)
Translates to: VICKESFCFLGQCKTLKFPTQVV*SKILFH
Trigger: ATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCATAGCTGCAGTGATATaGAAAGAAAGCTTCTGTTTC +
Preference number: 2 (lower is better)
Translates to: HILILYIYTTRQKTSKAGIAAVI*KESFCF
Trigger: GAAACAGAAGCTTTCTTTGCATATCACTGCAGCTAT...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCCAACCCAGGTTGTATaGTCAAAAATACTTTTTCAT +
Preference number: 2 (lower is better)
Translates to: HILILYIYTTRQKTSKAGPTQVV*SKILFH
Trigger: ATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR GCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAAAGACATTAGATAGCTaGAGTGATATGCAAAGAAAG +
Preference number: 2 (lower is better)
Translates to: LIETIFVNPPNHAKISPSKTLDS*SDMQRK
Trigger: CTTTCTTTGCATATCACTGCAGCTATCTAATGTCTT...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR GCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCACTAAGAAGCCTTATGTaGTACTATAAAATTTCCCAC +
Preference number: 2 (lower is better)
Translates to: LIETIFVNPPNHAKISPSLRSLM*YYKISH
Trigger: GTGGGAAATTTTATAGTAGCACATAAGGCTTCTTAG...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR CCA 72 bp AATGAACCACCTCTATCAAAGCCACAGGGACTCTACTaGACTCATCCAACCATGCAGACTACCCAATATGTC +
Preference number: 3 (lower is better)
Translates to: NEPPLSKPQGLY*THPTMQTTQYV
Trigger: GACATATTGGGTAGTCTGCATGGTTGGATGAGTCCAGTAGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR CCA 72 bp TTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATaGTTGGCTAGCCCAAAATTGTATGGCAGTGGTAGG +
Preference number: 3 (lower is better)
Translates to: FILVCLENPEEP*LASPKLYGSGR
Trigger: CCTACCACTGCCATACAATTTTGGGCTAGCCAACCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR TCA 72 bp CATCAGGAAGCAATCTTTCCTCAACTGCTATATATATaGGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAA +
Preference number: 3 (lower is better)
Translates to: HQEAIFPQLLYI*GSFPTQVVCSK
Trigger: TTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTCATATATATAGCAGTTGAGGAAAGATTGCTTCCTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR CAA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATTGCATCCAACTAAATTaGCATCAGGAAGCAATCTTT +
Preference number: 3 (lower is better)
Translates to: PRFASFAFRWREDVAAGNCIQLN*HQEAIF
Trigger: AAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCA...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR CAA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTCTGTCACAGGCCTCTaGAACATTCATACAAGAAAC +
Preference number: 3 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRISVTGL*NIHTRN
Trigger: GTTTCTTGTATGAATGTTCAAGAGGCCTGTGACAGA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR TCA 72 bp AATGGAAGGATTGGGGGTAGTTTGTTTCAGATCAAGTaGAACAGATGTCTGAGACAATCTTATCTTAGGTGT +
Preference number: 3 (lower is better)
Translates to: NGRIGGSLFQIK*NRCLRQSYLRC
Trigger: ACACCTAAGATAAGATTGTCTCAGACATCTGTTTCACTTGATCTGAAACAAACTACCCCCAATCCTTCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTGCATCCAACTAAATTaGCATCAGGAAGCAATCTTT +
Preference number: 3 (lower is better)
Translates to: VICKESFCFLGQCKTLKFCIQLN*HQEAIF
Trigger: AAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR-3UTR CAA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAGAATTAATGGAAGGATaGGGGGTAGTTTGTTTCAGA +
Preference number: 3 (lower is better)
Translates to: LIETIFVNPPNHAKISPSELMEG*GVVCFR
Trigger: TCTGAAACAAACTACCCCCAATCCTTCCATTAATTC...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR CAA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCATGCATCCAACTAAATTaGCATCAGGAAGCAATCTTT +
Preference number: 3 (lower is better)
Translates to: LIETIFVNPPNHAKISPSCIQLN*HQEAIF
Trigger: AAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCA...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR CAA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAAGATATTATTCATCCTaGTATGTCTTGAGAATCCCG +
Preference number: 3 (lower is better)
Translates to: LIETIFVNPPNHAKISPSRYYSS*YVLRIP
Trigger: CGGGATTCTCAAGACATACAAGGATGAATAATATCT...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR-3UTR CAA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAATGAGCCATAAGAAATaGCTGTTTTGTAGACAAAGG +
Preference number: 3 (lower is better)
Translates to: LIETIFVNPPNHAKISPSMSHKK*LFCRQR
Trigger: CCTTTGTCTACAAAACAGCAATTTCTTATGGCTCAT...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR TCA 72 bp AACCATGCAGACTACCCAATATGTCAATCATGGTTGTaGAGAGTCAAAAACATTTCAGCTTTCATGAAATTA +
Preference number: 3 (lower is better)
Translates to: NHADYPICQSWL*RVKNISAFMKL
Trigger: TAATTTCATGAAAGCTGAAATGTTTTTGACTCTTCACAACCATGATTGACATATTGGGTAGTCTGCATGGTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCCGGCTCGCCGCAGGCTaGGGATCAGCTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSRLAAG*GSAPPC
Trigger: GCAAGGAGGAGCTGATCCGCAGCCTGCGGCGAGCCG...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTCGGCTCGCCGCAGGCTaGGGATCAGCTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSRLAAG*GSAPPC
Trigger: GCAAGGAGGAGCTGATCCGCAGCCTGCGGCGAGCCG...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATTGGTGTGCTCTGGGCTaGCCTCGCTCCGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNWCALG*PRSGAS
Trigger: AGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCA...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATGGATGTGGGTGCCTCTaGTGCTCGGGGCTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNGCGCL*CSGLPL
Trigger: CAAGGGCAGCCCCGAGCAGCAGAGGCACCCACATCC...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGCGGCTCGCCGCAGGCTaGGGATCAGCTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRRLAAG*GSAPPC
Trigger: GCAAGGAGGAGCTGATCCGCAGCCTGCGGCGAGCCG...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATGCTCGGGGCTGCCCTTaGACAAGGGCTTGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNARGCP*TRACGA
Trigger: AGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGC...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTGGATGTGGGTGCCTCTaGTGCTCGGGGCTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSGCGCL*CSGLPL
Trigger: CAAGGGCAGCCCCGAGCAGCAGAGGCACCCACATCC...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTGGGCTCCCTCCACTGTaGCTGGTGTGTTCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSGLPPL*LVCSGL
Trigger: CAGCCCGGAACACACCAGGCACAGTGGAGGGAGCCC...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCACCCTTGCCACCACTaGAAGACCCGCCGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSHPCHH*KTRRAL
Trigger: CAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCTGGCCTGGCTATCGATaGAGCAGCGGCTGCCGGCAC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSWPGYR*SSGCRH
Trigger: GTGCCGGCAGCCGCTGCTCCATCGATAGCCAGGCCA...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTGGCCTGGCTATCGATaGAGCAGCGGCTGCCGGCAC +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSWPGYR*SSGCRH
Trigger: GTGCCGGCAGCCGCTGCTCCATCGATAGCCAGGCCA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTGTGTTTGGTGTGCTCTaGGCTGCCCTCGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSVFGVL*AALAPG
Trigger: CCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACAC...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTGCTGCTCCCTGGATGTaGGTGCCTCTGCTGCTCGGG +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSAAPWM*VPLLLG
Trigger: CCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGC...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTGCTGCTCCCTGGATGTaGGTGCCTCTGCTGCTCGGG +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSAAPWM*VPLLLG
Trigger: CCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGC...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATCTGGGCTTGTTCCCCTaGCTCTGGGGAGGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNLGLFP*LWGGAP
Trigger: TGGAGCACCTCCCCAGAGCCAGGGGAACAAGCCCAG...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCGGCTCGCCGCAGGCTaGGGATCAGCTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSRLAAG*GSAPPC
Trigger: GCAAGGAGGAGCTGATCCGCAGCCTGCGGCGAGCCG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTGGTGTGCTCTGGGCTaGCCTCGCTCCGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIWCALG*PRSGAS
Trigger: AGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGTGGTGTGCTCTGGGCTaGCCTCGCTCCGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRWCALG*PRSGAS
Trigger: AGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCA...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTGCTCGGGGCTGCCCTTaGACAAGGGCTTGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSARGCP*TRACGA
Trigger: AGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGC...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGCTCCCTGGATGTGGGTaGCTCTGCTGCTCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRLPGCG*LCCSGL
Trigger: CAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAG...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTGCAGCACTTCTGGGCTaGTCCCTGGATGTGGGTGCC +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSAALLG*SLDVGA
Trigger: GGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGC...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGGGCTCCCTCCACTGTaGCTGGTGTGTTCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRGLPPL*LVCSGL
Trigger: CAGCCCGGAACACACCAGGCACAGTGGAGGGAGCCC...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGTGCTGCCCCCGCCGCTaGCTCCACTGCCACTTGCAT +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWCCPRR*LHCHLH
Trigger: ATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCA...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCCAGCTGGCACAGGCTaGCCTGGCTATCGATGGAGC +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSPAGTG*PGYRWS
Trigger: GCTCCATCGATAGCCAGGCCAGCCTGTGCCAGCTGG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCGCGGAGGCAACCAGCTaGCACAGGCTGGCCTGGCTA +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIAEATS*HRLAWL
Trigger: TAGCCAGGCCAGCCTGTGCCAGCTGGTTGCCTCCGC...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
CDS-3UTR CCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGCGGAGGCAACCAGCTaGCACAGGCTGGCCTGGCTA +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRAEATS*HRLAWL
Trigger: TAGCCAGGCCAGCCTGTGCCAGCTGGTTGCCTCCGC...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGGTGTTTGGTGTGCTCTaGGCTGCCCTCGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWVFGVL*AALAPG
Trigger: CCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACAC...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTCCCTCCACTGTGCCTaGTGTGTTCCGGGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSSLHCA*CVPGCL
Trigger: GAGGCAGCCCGGAACACACCAGGCACAGTGGAGGGA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCTCCCTCCACTGTGCCTaGTGTGTTCCGGGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSSLHCA*CVPGCL
Trigger: GAGGCAGCCCGGAACACACCAGGCACAGTGGAGGGA...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCTGGGCTTGTTCCCCTaGCTCTGGGGAGGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLGLFP*LWGGAP
Trigger: TGGAGCACCTCCCCAGAGCCAGGGGAACAAGCCCAG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTTGGTGTGCTCTGGGCTaGCCTCGCTCCGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSWCALG*PRSGAS
Trigger: AGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCA...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCCTCCTGTGTTTGGTGTaGTCTGGGCTGCCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSLLCLV*SGLPSL
Trigger: GAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAG...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCTCCTGTGTTTGGTGTaGTCTGGGCTGCCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLLCLV*SGLPSL
Trigger: GAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCGCTCGGGGCTGCCCTTaGACAAGGGCTTGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIARGCP*TRACGA
Trigger: AGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGC...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTCTGCTGCTCGGGGCTaGCCTTGCACAAGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSSAARG*PCTRAC
Trigger: ACAAGCCCTTGTGCAAGGGCAGCCCCGAGCAGCAGA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTGTGGGTGCCTCTGCTaGTCGGGGCTGCCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFCGCLC*SGLPLH
Trigger: GTGCAAGGGCAGCCCCGAGCAGCAGAGGCACCCACA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTGGATGTGGGTGCCTCTaGTGCTCGGGGCTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFGCGCL*CSGLPL
Trigger: CAAGGGCAGCCCCGAGCAGCAGAGGCACCCACATCC...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTCTCCCTGGATGTGGGTaGCTCTGCTGCTCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSLPGCG*LCCSGL
Trigger: CAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAG...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCTCCCTGGATGTGGGTaGCTCTGCTGCTCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFLPGCG*LCCSGL
Trigger: CAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCTGGCTCTGGGGAGGTaGTCCAGGCTCCCACCAAGG +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFLALGR*SRLPPR
Trigger: CCTTGGTGGGAGCCTGGAGCACCTCCCCAGAGCCAG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCTGGCTCTGGGGAGGTaGTCCAGGCTCCCACCAAGG +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSLALGR*SRLPPR
Trigger: CCTTGGTGGGAGCCTGGAGCACCTCCCCAGAGCCAG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTGCTGCCCCCGCCGCTaGCTCCACTGCCACTTGCAT +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFCCPRR*LHCHLH
Trigger: ATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTGCGGAGGCAACCAGCTaGCACAGGCTGGCCTGGCTA +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSAEATS*HRLAWL
Trigger: TAGCCAGGCCAGCCTGTGCCAGCTGGTTGCCTCCGC...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTGTGTTTGGTGTGCTCTaGGCTGCCCTCGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFVFGVL*AALAPG
Trigger: CCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACAC...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTCTTGGGCAGCACTTCTaGGCTGCTCCCTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSLGQHF*AAPWMW
Trigger: CCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAG...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCTTGGGCAGCACTTCTaGGCTGCTCCCTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLGQHF*AAPWMW
Trigger: CCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGTTGTTCCCCTGGCTCTaGGGAGGTGCTCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWLFPWL*GGAPGS
Trigger: GGAGCCTGGAGCACCTCCCCAGAGCCAGGGGAACAA...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGTTGTTCCCCTGGCTCTaGGGAGGTGCTCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRLFPWL*GGAPGS
Trigger: GGAGCCTGGAGCACCTCCCCAGAGCCAGGGGAACAA...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCACGGATCTCGCCGAGATaGAGCTGCAGGCGGCGGTTG +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSRISPR*SCRRRL
Trigger: CAACCGCCGCCTGCAGCTGCATCTCGGCGAGATCCG...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCTCCTGTGTTTGGTGTaGTCTGGGCTGCCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRILLCLV*SGLPSL
Trigger: GAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAG...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCACAAGGGCTTGTGGTaGTCAGGGCTGGGTCCTTTC +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSHKGLW*SGLGPF
Trigger: GAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTGCTCGGGGCTGCCCTTaGACAAGGGCTTGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSARGCP*TRACGA
Trigger: AGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGC...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTCTGCTGCTCGGGGCTaGCCTTGCACAAGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRISAARG*PCTRAC
Trigger: ACAAGCCCTTGTGCAAGGGCAGCCCCGAGCAGCAGA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTGTGGGTGCCTCTGCTaGTCGGGGCTGCCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGCGCLC*SGLPLH
Trigger: GTGCAAGGGCAGCCCCGAGCAGCAGAGGCACCCACA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTGCAGCACTTCTGGGCTaGTCCCTGGATGTGGGTGCC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFAALLG*SLDVGA
Trigger: GGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGC...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTGCAGCACTTCTGGGCTaGTCCCTGGATGTGGGTGCC +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSAALLG*SLDVGA
Trigger: GGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGC...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCGGGCTCCCTCCACTGTaGCTGGTGTGTTCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGGLPPL*LVCSGL
Trigger: CAGCCCGGAACACACCAGGCACAGTGGAGGGAGCCC...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCTGGCTCTGGGGAGGTaGTCCAGGCTCCCACCAAGG +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGLALGR*SRLPPR
Trigger: CCTTGGTGGGAGCCTGGAGCACCTCCCCAGAGCCAG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTGCTGCCCCCGCCGCTaGCTCCACTGCCACTTGCAT +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGCCPRR*LHCHLH
Trigger: ATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATCTTCCCCCACTGGCATaGTGTTTGTGGTGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNLPPLA*CLWWSG
Trigger: TCCTGACCACCACAAACACCATGCCAGTGGGGGAAG...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCTTGCACAAGGGCTTGTaGTGCTCAGGGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSLHKGL*CSGLGP
Trigger: AGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAA...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTTGCACAAGGGCTTGTaGTGCTCAGGGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSLHKGL*CSGLGP
Trigger: AGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTTTGCACAAGGGCTTGTaGTGCTCAGGGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLHKGL*CSGLGP
Trigger: AGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAA...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCGCTGCTCCCTGGATGTaGGTGCCTCTGCTGCTCGGG +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGAAPWM*VPLLLG
Trigger: CCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGC...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCTTGGGCAGCACTTCTaGGCTGCTCCCTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRILGQHF*AAPWMW
Trigger: CCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAG...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGCTTGGGCAGCACTTCTaGGCTGCTCCCTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRLGQHF*AAPWMW
Trigger: CCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAG...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATTTCCGGGCTGCCTCCTaGCCTATGCTTCTGGAAATG +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNFRAAS*PMLLEM
Trigger: CATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAA...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTTCCCTCCACTGTGCCTaGTGTGTTCCGGGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSSLHCA*CVPGCL
Trigger: GAGGCAGCCCGGAACACACCAGGCACAGTGGAGGGA...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTTGTTCCCCTGGCTCTaGGGAGGTGCTCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFLFPWL*GGAPGS
Trigger: GGAGCCTGGAGCACCTCCCCAGAGCCAGGGGAACAA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTTTGTTCCCCTGGCTCTaGGGAGGTGCTCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSLFPWL*GGAPGS
Trigger: GGAGCCTGGAGCACCTCCCCAGAGCCAGGGGAACAA...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCTGGGCTTGTTCCCCTaGCTCTGGGGAGGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSLGLFP*LWGGAP
Trigger: TGGAGCACCTCCCCAGAGCCAGGGGAACAAGCCCAG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTAGACCCGCCGGGCTCTaGGCCCCCAGCCTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTRPAGL*APSLSP
Trigger: TGGAGAAAGGCTGGGGGCCCAGAGCCCGGCGGGTCT...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTCCCGGGACACCCTTTTaGCTTTCTGCCGGTCATCAT +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSPGTPF*LSAGHH
Trigger: ATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGG...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCTCCTGTGTTTGGTGTaGTCTGGGCTGCCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSLLCLV*SGLPSL
Trigger: GAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTTGTGGGTGCCTCTGCTaGTCGGGGCTGCCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTCGCLC*SGLPLH
Trigger: GTGCAAGGGCAGCCCCGAGCAGCAGAGGCACCCACA...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTGGATGTGGGTGCCTCTaGTGCTCGGGGCTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTGCGCL*CSGLPL
Trigger: CAAGGGCAGCCCCGAGCAGCAGAGGCACCCACATCC...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTCTCCCTGGATGTGGGTaGCTCTGCTGCTCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTLPGCG*LCCSGL
Trigger: CAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAG...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTCTGGCTCTGGGGAGGTaGTCCAGGCTCCCACCAAGG +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTLALGR*SRLPPR
Trigger: CCTTGGTGGGAGCCTGGAGCACCTCCCCAGAGCCAG...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATGCCTCCACTGCCACTTaGATGTTTGTGATCAGGGCT +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNASTAT*MFVIRA
Trigger: AGCCCTGATCACAAACATGCAAGTGGCAGTGGAGGC...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTTGCTGCCCCCGCCGCTaGCTCCACTGCCACTTGCAT +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTCCPRR*LHCHLH
Trigger: ATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCA...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGCGAATGAGGTTGCTGTaGTCCAGCATCGCGCTCACC +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRRMRLL*SSIALT
Trigger: GGTGAGCGCGATGCTGGACCACAGCAACCTCATTCG...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTTGGCCTGGCTATCGATaGAGCAGCGGCTGCCGGCAC +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTWPGYR*SSGCRH
Trigger: GTGCCGGCAGCCGCTGCTCCATCGATAGCCAGGCCA...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCCAGCTGGCACAGGCTaGCCTGGCTATCGATGGAGC +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGPAGTG*PGYRWS
Trigger: GCTCCATCGATAGCCAGGCCAGCCTGTGCCAGCTGG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCTTCCCCCACTGGCATaGTGTTTGTGGTGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLPPLA*CLWWSG
Trigger: TCCTGACCACCACAAACACCATGCCAGTGGGGGAAG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTGTGGTGCTCAGGGCTaGGTCCTTTCAGTGCTTTGG +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSCGAQG*VLSVLW
Trigger: CCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTTGCACAAGGGCTTGTaGTGCTCAGGGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRILHKGL*CSGLGP
Trigger: AGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTGCTGCTCCCTGGATGTaGGTGCCTCTGCTGCTCGGG +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTAAPWM*VPLLLG
Trigger: CCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGC...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTTCCGGGCTGCCTCCTaGCCTATGCTTCTGGAAATG +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSFRAAS*PMLLEM
Trigger: CATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCTGGGCTTGTTCCCCTaGCTCTGGGGAGGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGLGLFP*LWGGAP
Trigger: TGGAGCACCTCCCCAGAGCCAGGGGAACAAGCCCAG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCAGAACCCGGGAGAGATaGCAGGCATCGTCCTATTCC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSRTRER*QASSYS
Trigger: GGAATAGGACGATGCCTGCCATCTCTCCCGGGTTCT...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGCCCGGGACACCCTTTTaGCTTTCTGCCGGTCATCAT +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWPGTPF*LSAGHH
Trigger: ATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGG...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGCCCGGGACACCCTTTTaGCTTTCTGCCGGTCATCAT +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRPGTPF*LSAGHH
Trigger: ATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGG...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCACAAGGGCTTGTGGTaGTCAGGGCTGGGTCCTTTC +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSHKGLW*SGLGPF
Trigger: GAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTCACAAGGGCTTGTGGTaGTCAGGGCTGGGTCCTTTC +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSHKGLW*SGLGPF
Trigger: GAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTG...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTCTGCTGCTCGGGGCTaGCCTTGCACAAGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGSAARG*PCTRAC
Trigger: ACAAGCCCTTGTGCAAGGGCAGCCCCGAGCAGCAGA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTGCAGCACTTCTGGGCTaGTCCCTGGATGTGGGTGCC +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTAALLG*SLDVGA
Trigger: GGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGC...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTTCCAGGACAGGAGCCTaGAGCATCTCCAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSSRTGA*SISKFP
Trigger: AGGAAACTTGGAGATGCTGCAGGCTCCTGTCCTGGA...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATAACCCTGGGGCAGCATaGGATTTTCTTCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNNPGAA*DFLLPA
Trigger: AGCTGGAAGAAGAAAATCGCATGCTGCCCCAGGGTT...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093253.10
CDS-3UTR CCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCGAATGAGGTTGCTGTaGTCCAGCATCGCGCTCACC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFRMRLL*SSIALT
Trigger: GGTGAGCGCGATGCTGGACCACAGCAACCTCATTCG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTCCAGCTGGCACAGGCTaGCCTGGCTATCGATGGAGC +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTPAGTG*PGYRWS
Trigger: GCTCCATCGATAGCCAGGCCAGCCTGTGCCAGCTGG...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCCTGGCCTATGCTTCTaGAAATGTTCAGGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSPGLCF*KCSGLP
Trigger: TGGGAGCCCTGAACATTTCCAGAAGCATAGGCCAGG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATTTCCTCCACACAACCTaGGGCAGCATGCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNFLHTT*GSMRFS
Trigger: AGAAAATCGCATGCTGCCCCAGGTTGTGTGGAGGAA...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042534.15
ENSMUST00000109502.9
CDS-3UTR TCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTCCCCGTAATGTTGTTTaGGATGCTCTGGGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSPRNVV*DALGLF
Trigger: GAACAAGCCCAGAGCATCTCAAACAACATTACGGGG...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCCCCCGTAATGTTGTTTaGGATGCTCTGGGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSPRNVV*DALGLF
Trigger: GAACAAGCCCAGAGCATCTCAAACAACATTACGGGG...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCACAGGTTCAGGCTGCTaGGAAGGTGTGGTATGTCCA +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRITGSGC*EGVVCP
Trigger: TGGACATACCACACCTTCTCAGCAGCCTGAACCTGT...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093253.10
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTCCCGGGACACCCTTTTaGCTTTCTGCCGGTCATCAT +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSPGTPF*LSAGHH
Trigger: ATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGG...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGTCCAGGACAGGAGCCTaGAGCATCTCCAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWSRTGA*SISKFP
Trigger: AGGAAACTTGGAGATGCTGCAGGCTCCTGTCCTGGA...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCGAATGAGGTTGCTGTaGTCCAGCATCGCGCTCACC +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGRMRLL*SSIALT
Trigger: GGTGAGCGCGATGCTGGACCACAGCAACCTCATTCG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTAGGTCCCTCAGTTCCTaGTTGTCTTCCTGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSRSLSS*LSSWSF
Trigger: GAAACTCCAGGAAGACAACCAGGAACTGAGGGACCT...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCTTCCCCCACTGGCATaGTGTTTGTGGTGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSLPPLA*CLWWSG
Trigger: TCCTGACCACCACAAACACCATGCCAGTGGGGGAAG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCTTCCCCCACTGGCATaGTGTTTGTGGTGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFLPPLA*CLWWSG
Trigger: TCCTGACCACCACAAACACCATGCCAGTGGGGGAAG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTTGTGGTGCTCAGGGCTaGGTCCTTTCAGTGCTTTGG +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSCGAQG*VLSVLW
Trigger: CCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACA...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTGTGGTGCTCAGGGCTaGGTCCTTTCAGTGCTTTGG +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFCGAQG*VLSVLW
Trigger: CCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGCCTGGCCTATGCTTCTaGAAATGTTCAGGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWPGLCF*KCSGLP
Trigger: TGGGAGCCCTGAACATTTCCAGAAGCATAGGCCAGG...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTTTCCGGGCTGCCTCCTaGCCTATGCTTCTGGAAATG +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSFRAAS*PMLLEM
Trigger: CATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAA...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTTTGTTTGAGATGCTCTaGGCTTGTTCCCCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLFEML*ACSPGS
Trigger: AGAGCCAGGGGAACAAGCCCAGAGCATCTCAAACAA...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTTGTTTGAGATGCTCTaGGCTTGTTCCCCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSLFEML*ACSPGS
Trigger: AGAGCCAGGGGAACAAGCCCAGAGCATCTCAAACAA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTCTATTCTGGGTAGCCTaGGGCAGCATGCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSLFWVA*GSMRFS
Trigger: AGAAAATCGCATGCTGCCCCAGGCTACCCAGAATAG...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCAGCTGGAGAGTTGAGTaGACTGTTATTCCCATCAGC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSSWRVE*TVIPIS
Trigger: GCTGATGGGAATAACAGTTCACTCAACTCTCCAGCT...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTACCCTTTTGCCTTTCTaGCGGTCATCATCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSTLLPF*RSSSRK
Trigger: TTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGT...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCAGCTCCTTCAGCTTCTaGAAGTATAAGGCCACTTCC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSSSFSF*KYKATS
Trigger: GGAAGTGGCCTTATACTTGCAGAAGCTGAAGGAGCT...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGCAACCTGGGGCAGCATaGGATTTTCTTCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWQPGAA*DFLLPA
Trigger: AGCTGGAAGAAGAAAATCGCATGCTGCCCCAGGTTG...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042534.15
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTTCCAGGACAGGAGCCTaGAGCATCTCCAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSSRTGA*SISKFP
Trigger: AGGAAACTTGGAGATGCTGCAGGCTCCTGTCCTGGA...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCATGTGGTGCTCAGGGCTaGGTCCTTTCAGTGCTTTGG +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSCGAQG*VLSVLW
Trigger: CCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACA...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCCTGGCCTATGCTTCTaGAAATGTTCAGGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSPGLCF*KCSGLP
Trigger: TGGGAGCCCTGAACATTTCCAGAAGCATAGGCCAGG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCATTCCGGGCTGCCTCCTaGCCTATGCTTCTGGAAATG +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSFRAAS*PMLLEM
Trigger: CATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAA...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGTTGTTTGAGATGCTCTaGGCTTGTTCCCCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWLFEML*ACSPGS
Trigger: AGAGCCAGGGGAACAAGCCCAGAGCATCTCAAACAA...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTTCCTCCACACAACCTaGGGCAGCATGCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIFLHTT*GSMRFS
Trigger: AGAAAATCGCATGCTGCCCCAGGTTGTGTGGAGGAA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042534.15
ENSMUST00000109502.9
3UTR CAA 72 bp TGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTaGAGAATCCCGAAGAACCATGGTTGGCTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: CQDLRYYSSLYV*RIPKNHGWLAQ
Trigger: TTGGGCTAGCCAACCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
3UTR CAA 72 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTaGTATGTCTTGAGAATCCCGAAGAACCATGGTTGG +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSS*YVLRIPKNHGW
Trigger: CCAACCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR TCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTCCCCGTAATGTTGTTTaGGATGCTCTGGGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSPRNVV*DALGLF
Trigger: GAACAAGCCCAGAGCATCTCAAACAACATTACGGGG...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCCCCGTAATGTTGTTTaGGATGCTCTGGGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFPRNVV*DALGLF
Trigger: GAACAAGCCCAGAGCATCTCAAACAACATTACGGGG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACAGGTTCAGGCTGCTaGGAAGGTGTGGTATGTCCA +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGTGSGC*EGVVCP
Trigger: TGGACATACCACACCTTCTCAGCAGCCTGAACCTGT...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGACCCTTTTGCCTTTCTaGCGGTCATCATCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRTLLPF*RSSSRK
Trigger: TTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGT...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGAGCTCCTTCAGCTTCTaGAAGTATAAGGCCACTTCC +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRSSFSF*KYKATS
Trigger: GGAAGTGGCCTTATACTTGCAGAAGCTGAAGGAGCT...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAGCCTCCACTGCCACTTaGATGTTTGTGATCAGGGCT +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSASTAT*MFVIRA
Trigger: AGCCCTGATCACAAACATGCAAGTGGCAGTGGAGGC...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTAGGTTGATTCATTCATaGCGCTGTAGACATTCCGGT +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSRLIHS*RCRHSG
Trigger: ACCGGAATGTCTACAGCGGCATGAATGAATCAACCT...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCAACCTGGGGCAGCATaGGATTTTCTTCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSQPGAA*DFLLPA
Trigger: AGCTGGAAGAAGAAAATCGCATGCTGCCCCAGGTTG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042534.15
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCATCCAGGACAGGAGCCTaGAGCATCTCCAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSSRTGA*SISKFP
Trigger: AGGAAACTTGGAGATGCTGCAGGCTCCTGTCCTGGA...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATTCTTCCTGGAGTTTCTaGTTAATATCCTTGAGCCCT +
Preference number: 4 (lower is better)
Translates to: PRFASFAFRWREDVAAGNSSWSF*LISLSP
Trigger: AGGGCTCAAGGATATTAACCAGAAACTCCAGGAAGA...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTAGGTCCCTCAGTTCCTaGTTGTCTTCCTGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSRSLSS*LSSWSF
Trigger: GAAACTCCAGGAAGACAACCAGGAACTGAGGGACCT...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTAGGTCCCTCAGTTCCTaGTTGTCTTCCTGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFRSLSS*LSSWSF
Trigger: GAAACTCCAGGAAGACAACCAGGAACTGAGGGACCT...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCCTGGCCTATGCTTCTaGAAATGTTCAGGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGPGLCF*KCSGLP
Trigger: TGGGAGCCCTGAACATTTCCAGAAGCATAGGCCAGG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTAACATAGGACAAGGTTaGTTCATTCATGCCGCTGTA +
Preference number: 4 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSNIGQG*FIHAAV
Trigger: TACAGCGGCATGAATGAATCAACCTTGTCCTATGTT...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTAGCTGGAGAGTTGAGTaGACTGTTATTCCCATCAGC +
Preference number: 4 (lower is better)
Translates to: VICKESFCFLGQCKTLKFSWRVE*TVIPIS
Trigger: GCTGATGGGAATAACAGTTCACTCAACTCTCCAGCT...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTACCCTTTTGCCTTTCTaGCGGTCATCATCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSTLLPF*RSSSRK
Trigger: TTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGT...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTAGCTCCTTCAGCTTCTaGAAGTATAAGGCCACTTCC +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSSSFSF*KYKATS
Trigger: GGAAGTGGCCTTATACTTGCAGAAGCTGAAGGAGCT...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTGCCTCCACTGCCACTTaGATGTTTGTGATCAGGGCT +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTASTAT*MFVIRA
Trigger: AGCCCTGATCACAAACATGCAAGTGGCAGTGGAGGC...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGAGGTTGATTCATTCATaGCGCTGTAGACATTCCGGT +
Preference number: 4 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRRLIHS*RCRHSG
Trigger: ACCGGAATGTCTACAGCGGCATGAATGAATCAACCT...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAAGGTCCCTCAGTTCCTaGTTGTCTTCCTGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSRSLSS*LSSWSF
Trigger: GAAACTCCAGGAAGACAACCAGGAACTGAGGGACCT...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTTGTTTGAGATGCTCTaGGCTTGTTCCCCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGLFEML*ACSPGS
Trigger: AGAGCCAGGGGAACAAGCCCAGAGCATCTCAAACAA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCATAGGCCCTTTGTACTaGTTTCCTGACAAATGTTGC +
Preference number: 4 (lower is better)
Translates to: EGASQPRLYAQKYFFISSIGPLY*FPDKCC
Trigger: GCAACATTTGTCAGGAAACCAGTACAAAGGGCCTAT...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGAACCTAAAAGAACCCTaGGGCAGCATGCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWNLKEP*GSMRFS
Trigger: AGAAAATCGCATGCTGCCCCAGGGTTCTTTTAGGTT...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093253.10
CDS-3UTR TCA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTTTGTACTGGTTTCCTaGCAAATGTTGCCTAATTCC +
Preference number: 4 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSFVLVS*QMLPNS
Trigger: GGAATTAGGCAACATTTGTCAGGAAACCAGTACAAA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp AGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCCCGAAGAACCATGGTTTCCTGACAAATGTTaGCTAATTCCAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: RPEILFILVCLENPEEPWFPDKC*LIPGQE
Trigger: CTCCTGTCCTGGAATTAGGCAACATTTGTCAGGAAA...CCATGGTTCTTCGGGATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR TCA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTTTGTACTGGTTTCCTaGCAAATGTTGCCTAATTCC +
Preference number: 4 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIFVLVS*QMLPNS
Trigger: GGAATTAGGCAACATTTGTCAGGAAACCAGTACAAA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR TCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTTTCTAGTTGGAGGTTaGCTTCTATTCTGGGTAGCC +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGFLVGG*LLFWVA
Trigger: GGCTACCCAGAATAGAAGTCAACCTCCAACTAGAAA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR GCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCAAGGTTGATTCATTCATaGCGCTGTAGACATTCCGGT +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSRLIHS*RCRHSG
Trigger: ACCGGAATGTCTACAGCGGCATGAATGAATCAACCT...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTTTTCCTGACAAATGTTaGCTAATTCCAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSFPDKC*LIPGQE
Trigger: CTCCTGTCCTGGAATTAGGCAACATTTGTCAGGAAA...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTTCTTCCTGGAGTTTCTaGTTAATATCCTTGAGCCCT +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSSSWSF*LISLSP
Trigger: AGGGCTCAAGGATATTAACCAGAAACTCCAGGAAGA...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CCA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTATAGGCCCTTTGTACTaGTTTCCTGACAAATGTTGC +
Preference number: 4 (lower is better)
Translates to: WYNAQHRKPHFTILLATSIGPLY*FPDKCC
Trigger: GCAACATTTGTCAGGAAACCAGTACAAAGGGCCTAT...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTTTCCTGACAAATGTTaGCTAATTCCAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGFPDKC*LIPGQE
Trigger: CTCCTGTCCTGGAATTAGGCAACATTTGTCAGGAAA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CCA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCATAGGCCCTTTGTACTaGTTTCCTGACAAATGTTGC +
Preference number: 4 (lower is better)
Translates to: HILILYIYTTRQKTSKAGIGPLY*FPDKCC
Trigger: GCAACATTTGTCAGGAAACCAGTACAAAGGGCCTAT...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR CAA 72 bp ATTTGCACAAGTATTTTGTCAAAAGACCAATGTCCTTaGTATCGCTACTGCAGGATCTACTGCAAGCACAAA +
Preference number: 4 (lower is better)
Translates to: ICTSILSKDQCP*YRYCRIYCKHK
Trigger: TTTGTGCTTGCAGTAGATCCTGCAGTAGCGATACAAAGGACATTGGTCTTTTGACAAAATACTTGTGCAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCATTTGTACTGGTTTCCTaGCAAATGTTGCCTAATTCC +
Preference number: 4 (lower is better)
Translates to: LIETIFVNPPNHAKISPSFVLVS*QMLPNS
Trigger: GGAATTAGGCAACATTTGTCAGGAAACCAGTACAAA...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR GCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTTTTCCTGACAAATGTTaGCTAATTCCAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTFPDKC*LIPGQE
Trigger: CTCCTGTCCTGGAATTAGGCAACATTTGTCAGGAAA...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR TCA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTTTTGTACTGGTTTCCTaGCAAATGTTGCCTAATTCC +
Preference number: 4 (lower is better)
Translates to: NVILHPTKFASGSNLSSTFVLVS*QMLPNS
Trigger: GGAATTAGGCAACATTTGTCAGGAAACCAGTACAAA...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
3UTR CAA 72 bp CACCTCAGAATTCAAATGAGAAAACCAAATGTTATCTaGCATCCAACTAAATTTGCATCAGGAAGCAATCTT +
Preference number: 4 (lower is better)
Translates to: HLRIQMRKPNVI*HPTKFASGSNL
Trigger: AAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATTTGGTTTTCTCATTTGAATTCTGAGGTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 90 bp GAACCCGGGAGAGATGGCAGGCATCGTCCTATTCCTCGGCACCCTTaGCACCACTGCAAGACCCGCCGGGCTCTGGGCCCCCAGCCTTTC +
Preference number: 5 (lower is better)
Translates to: EPGRDGRHRPIPRHP*HHCKTRRALGPQPF
Trigger: GAAAGGCTGGGGGCCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCTGCCATCTCTCCCGGGTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS GCA 90 bp TCCGGTGATGGGATGATGAATCCTCTTGAGCAGGCCGCCGGAGGGTaGCTTCCCTGCTGCCCCCGCCGCTGCCTCCACTGCCACTTGCAT +
Preference number: 5 (lower is better)
Translates to: SGDGMMNPLEQAAGG*LPCCPRRCLHCHLH
Trigger: ATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCAGGGAAGGCACCCTCCGGCGGCCTGCTCAAGAGGATTCATCATCCCATCACCGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp AGATGCAGCTGCAGGCGGCGGTTGACCTCGCGAATGAGGTTGCTGTaGTCCAGCATCGCGCTCACCTTCTCGGCTTCGGCTCGCCGCAGG +
Preference number: 5 (lower is better)
Translates to: RCSCRRRLTSRMRLL*SSIALTFSASARRR
Trigger: CCTGCGGCGAGCCGAAGCCGAGAAGGTGAGCGCGATGCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCATCT
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp GCTCCCACTCAACACGTGCTTGGGCAGCACTTCTGGGCTGCTCCCTaGATGTGGGTGCCTCTGCTGCTCGGGGCTGCCCTTGCACAAGGG +
Preference number: 5 (lower is better)
Translates to: APTQHVLGQHFWAAP*MWVPLLLGAALAQG
Trigger: CCCTTGTGCAAGGGCAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAGCACGTGTTGAGTGGGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 90 bp GGGATGATGAATCCTCTTGAGCAGGCCGCCGGAGGGTGCCTTCCCTaGTGCCCCCGCCGCTGCCTCCACTGCCACTTGCATGTTTGTGAT +
Preference number: 5 (lower is better)
Translates to: GMMNPLEQAAGGCLP*CPRRCLHCHLHVCD
Trigger: ATCACAAACATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCAGGGAAGGCACCCTCCGGCGGCCTGCTCAAGAGGATTCATCATCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp GCTGCTCGGGGCTGCCCTTGCACAAGGGCTTGTGGTGCTCAGGGCTaGGTCCTTTCAGTGCTTTGGAGTGATCTGGGGTCCCAGAAGCCC +
Preference number: 5 (lower is better)
Translates to: AARGCPCTRACGAQG*VLSVLWSDLGSQKP
Trigger: GGGCTTCTGGGACCCCAGATCACTCCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp GAAATGTTCAGGGCTCCCACTCAACACGTGCTTGGGCAGCACTTCTaGGCTGCTCCCTGGATGTGGGTGCCTCTGCTGCTCGGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: EMFRAPTQHVLGQHF*AAPWMWVPLLLGAA
Trigger: GGCAGCCCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAGCACGTGTTGAGTGGGAGCCCTGAACATTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 90 bp AGAGATGGCAGGCATCGTCCTATTCCTCGGCACCCTTGCCACCACTaGAAGACCCGCCGGGCTCTGGGCCCCCAGCCTTTCTCCATATTT +
Preference number: 5 (lower is better)
Translates to: RDGRHRPIPRHPCHH*KTRRALGPQPFSIF
Trigger: AAATATGGAGAAAGGCTGGGGGCCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCTGCCATCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS CCA 90 bp CCACTGTGCCTGGTGTGTTCCGGGCTGCCTCCTGGCCTATGCTTCTaGAAATGTTCAGGGCTCCCACTCAACACGTGCTTGGGCAGCACT +
Preference number: 5 (lower is better)
Translates to: PLCLVCSGLPPGLCF*KCSGLPLNTCLGST
Trigger: AGTGCTGCCCAAGCACGTGTTGAGTGGGAGCCCTGAACATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAACACACCAGGCACAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 90 bp TTCTGGTTAATATCCTTGAGCCCTCGGATCTCGCCGAGATGCAGCTaGAGGCGGCGGTTGACCTCGCGAATGAGGTTGCTGTGGTCCAGC +
Preference number: 5 (lower is better)
Translates to: FWLISLSPRISPRCS*RRRLTSRMRLLWSS
Trigger: GCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCATCTCGGCGAGATCCGAGGGCTCAAGGATATTAACCAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp TGCCCTCGCTCCGGGGCTTCTGTAAATGTTCAGGGCTTCCCCCACTaGCATGGTGTTTGTGGTGGTCAGGACTATCAGTACTGCCAGTGC +
Preference number: 5 (lower is better)
Translates to: CPRSGASVNVQGFPH*HGVCGGQDYQYCQC
Trigger: GCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAAGCCCCGGAGCGAGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 90 bp CTGGGTTTGTGTAGATGTTCAGGGCTAGTGCTCCTGTGTTTGGTGTaGTCTGGGCTGCCCTCGCTCCGGGGCTTCTGTAAATGTTCAGGG +
Preference number: 5 (lower is better)
Translates to: LGLCRCSGLVLLCLV*SGLPSLRGFCKCSG
Trigger: CCCTGAACATTTACAGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAGCACTAGCCCTGAACATCTACACAAACCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 90 bp CTGCAAGACCCGCCGGGCTCTGGGCCCCCAGCCTTTCTCCATATTTaGGCTGTTTCTAGTTGGAGGTTGACTTCTATTCTGGGTAGCCTG +
Preference number: 5 (lower is better)
Translates to: LQDPPGSGPPAFLHI*AVSSWRLTSILGSL
Trigger: CAGGCTACCCAGAATAGAAGTCAACCTCCAACTAGAAACAGCTCAAATATGGAGAAAGGCTGGGGGCCCAGAGCCCGGCGGGTCTTGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS GCA 90 bp CAGCTGTGTAGCGACCCAATCTTTGCCACTCCCGGGACACCCTTTTaGCTTTCTGCCGGTCATCATCCAGGAAACAGCATAGGTCCCTCA +
Preference number: 5 (lower is better)
Translates to: QLCSDPIFATPGTPF*LSAGHHPGNSIGPS
Trigger: TGAGGGACCTATGCTGTTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTACACAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp TCGCTCCGGGGCTTCTGTAAATGTTCAGGGCTTCCCCCACTGGCATaGTGTTTGTGGTGGTCAGGACTATCAGTACTGCCAGTGCTAGAG +
Preference number: 5 (lower is better)
Translates to: SLRGFCKCSGLPPLA*CLWWSGLSVLPVLE
Trigger: CTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAAGCCCCGGAGCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp TGCACAAGGGCTTGTGGTGCTCAGGGCTGGGTCCTTTCAGTGCTTTaGAGTGATCTGGGGTCCCAGAAGCCCTGGGTTTGTGTAGATGTT +
Preference number: 5 (lower is better)
Translates to: CTRACGAQGWVLSVL*SDLGSQKPWVCVDV
Trigger: AACATCTACACAAACCCAGGGCTTCTGGGACCCCAGATCACTCCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp GGCTTCTGTAAATGTTCAGGGCTTCCCCCACTGGCATGGTGTTTGTaGTGGTCAGGACTATCAGTACTGCCAGTGCTAGAGGTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: GFCKCSGLPPLAWCL*WSGLSVLPVLEVLL
Trigger: CAGCAGCACCTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 90 bp TTCTGTAAATGTTCAGGGCTTCCCCCACTGGCATGGTGTTTGTGGTaGTCAGGACTATCAGTACTGCCAGTGCTAGAGGTGCTGCTGCCG +
Preference number: 5 (lower is better)
Translates to: FCKCSGLPPLAWCLW*SGLSVLPVLEVLLP
Trigger: CGGCAGCAGCACCTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109502.9
CDS CCA 90 bp TTCTGTAAATGTTCAGGGCTTCCCCCACTGGCATGGTGTTTGTGGTaGTCAGGACTATCAGTACTGCCAGTGCTAGAGGTGCTGCTGCCA +
Preference number: 5 (lower is better)
Translates to: FCKCSGLPPLAWCLW*SGLSVLPVLEVLLP
Trigger: TGGCAGCAGCACCTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCTGCTCGGGGCTGCCCTaGCACAAGGGCTTGTGGTGC +
Preference number: 5 (lower is better)
Translates to: EGASQPRLYAQKYFFISSCSGLP*HKGLWC
Trigger: GCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGCA...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTGCTCGGGGCTGCCCTaGCACAAGGGCTTGTGGTGC +
Preference number: 5 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSCSGLP*HKGLWC
Trigger: GCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGCA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATACCTCGCGAATGAGGTaGCTGTGGTCCAGCATCGCG +
Preference number: 5 (lower is better)
Translates to: PRFASFAFRWREDVAAGNTSRMR*LWSSIA
Trigger: CGCGATGCTGGACCACAGCAACCTCATTCGCGAGGT...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCCCTTGCACAAGGGCTaGTGGTGCTCAGGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSPLHKG*WCSGLG
Trigger: ACCCAGCCCTGAGCACCACAAGCCCTTGTGCAAGGG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTACCTCGCGAATGAGGTaGCTGTGGTCCAGCATCGCG +
Preference number: 5 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSTSRMR*LWSSIA
Trigger: CGCGATGCTGGACCACAGCAACCTCATTCGCGAGGT...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTGTAGCGACCCAATCTTaGCCACTCCCGGGACACCCT +
Preference number: 5 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSVATQS*PLPGHP
Trigger: AGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTAC...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCGTAGCGACCCAATCTTaGCCACTCCCGGGACACCCT +
Preference number: 5 (lower is better)
Translates to: EGASQPRLYAQKYFFISSVATQS*PLPGHP
Trigger: AGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTAC...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCTAGTGCTCCTGTGTTaGGTGTGCTCTGGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSLVLLC*VCSGLP
Trigger: GGGCAGCCCAGAGCACACCAAACACAGGAGCACTAG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTGCTCGGGGCTGCCCTaGCACAAGGGCTTGTGGTGC +
Preference number: 5 (lower is better)
Translates to: VICKESFCFLGQCKTLKFCSGLP*HKGLWC
Trigger: GCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGCA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 90 bp TTCCTCCACACAACCTTAAGAGAATGTACCACAGGTTCAGGCTGCTaGGAAGGTGTGGTATGTCCACTGAAGCTAGCTGGAGAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: FLHTTLRECTTGSGC*EGVVCPLKLAGELS
Trigger: ACTCAACTCTCCAGCTAGCTTCAGTGGACATACCACACCTTCTCAGCAGCCTGAACCTGTGGTACATTCTCTTAAGGTTGTGTGGAGGAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTAGCTGCAGGCGGCGGTaGACCTCGCGAATGAGGTTG +
Preference number: 5 (lower is better)
Translates to: VICKESFCFLGQCKTLKFSCRRR*TSRMRL
Trigger: CAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCT...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCGTAGCGACCCAATCTTaGCCACTCCCGGGACACCCT +
Preference number: 5 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRIVATQS*PLPGHP
Trigger: AGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTAC...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCCCTTGCACAAGGGCTaGTGGTGCTCAGGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: VICKESFCFLGQCKTLKFPLHKG*WCSGLG
Trigger: ACCCAGCCCTGAGCACCACAAGCCCTTGTGCAAGGG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 90 bp TCAACATCCAAGACCTTAAGAGAATGTACCACAGGTTCAGGCTGCTaGGAAGGTGTGGTATGTCCACTGAAGCTAGCTGGAGAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: STSKTLRECTTGSGC*EGVVCPLKLAGELS
Trigger: ACTCAACTCTCCAGCTAGCTTCAGTGGACATACCACACCTTCTCAGCAGCCTGAACCTGTGGTACATTCTCTTAAGGTCTTGGATGTTGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140601.3
CDS-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTACCTCGCGAATGAGGTaGCTGTGGTCCAGCATCGCG +
Preference number: 5 (lower is better)
Translates to: VICKESFCFLGQCKTLKFTSRMR*LWSSIA
Trigger: CGCGATGCTGGACCACAGCAACCTCATTCGCGAGGT...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTGTAGCGACCCAATCTTaGCCACTCCCGGGACACCCT +
Preference number: 5 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSVATQS*PLPGHP
Trigger: AGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTAC...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CCAAGATTTGCTAGTTTCGCCTTTAGATGGAGGGAAGATGTAGCAGCAGGAAATCCAGAAGCCCTGGGTTaGTGTAGATGTTCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: PRFASFAFRWREDVAAGNPEALG*CRCSGL
Trigger: TAGCCCTGAACATCTACACAAACCCAGGGCTTCTGG...ATTTCCTGCTGCTACATCTTCCCTCCATCTAAAGGCGAAACTAGCAAATCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp CTAATTGAGACTATATTTGTCAATCCTCCCAACCATGCAAAAATATCTCCCTCACCCTTGCACAAGGGCTaGTGGTGCTCAGGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: LIETIFVNPPNHAKISPSPLHKG*WCSGLG
Trigger: ACCCAGCCCTGAGCACCACAAGCCCTTGTGCAAGGG...TGAGGGAGATATTTTTGCATGGTTGGGAGGATTGACAAATATAGTCTCAATTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTTATTCCTCGGCACCCTaGCCACCACTGCAAGACCCG +
Preference number: 5 (lower is better)
Translates to: VICKESFCFLGQCKTLKFYSSAP*PPLQDP
Trigger: CGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATA...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACCTCGCGAATGAGGTaGCTGTGGTCCAGCATCGCG +
Preference number: 5 (lower is better)
Translates to: HILILYIYTTRQKTSKAGTSRMR*LWSSIA
Trigger: CGCGATGCTGGACCACAGCAACCTCATTCGCGAGGT...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTTTCTGGTTAATATCCTaGAGCCCTCGGATCTCGCCG +
Preference number: 5 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSFWLIS*SPRISP
Trigger: CGGCGAGATCCGAGGGCTCAAGGATATTAACCAGAA...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCTCCCTCAGTTCCTGGTaGTCTTCCTGGAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: EGASQPRLYAQKYFFISSSLSSW*SSWSFW
Trigger: CCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGA...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTTCCCTCAGTTCCTGGTaGTCTTCCTGGAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSSLSSW*SSWSFW
Trigger: CCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGA...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTCCACTGGCATGGTGTTaGTGGTGGTCAGGACTATCA +
Preference number: 5 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSPLAWC*WWSGLS
Trigger: TGATAGTCCTGACCACCACAAACACCATGCCAGTGG...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCCCACTGGCATGGTGTTaGTGGTGGTCAGGACTATCA +
Preference number: 5 (lower is better)
Translates to: EGASQPRLYAQKYFFISSPLAWC*WWSGLS
Trigger: TGATAGTCCTGACCACCACAAACACCATGCCAGTGG...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCCTAGTGCTCCTGTGTTaGGTGTGCTCTGGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: HILILYIYTTRQKTSKAGLVLLC*VCSGLP
Trigger: GGGCAGCCCAGAGCACACCAAACACAGGAGCACTAG...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GAGGGAGCTTCCCAACCCAGGTTGTATGCTCAAAAATACTTTTTCATATCTTCCCCAGAAGCCCTGGGTTaGTGTAGATGTTCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: EGASQPRLYAQKYFFISSPEALG*CRCSGL
Trigger: TAGCCCTGAACATCTACACAAACCCAGGGCTTCTGG...GGAAGATATGAAAAAGTATTTTTGAGCATACAACCTGGGTTGGGAAGCTCCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GGAAGCTTCTGCCAAGACCTGAGATATTATTCATCCTTGTATGTCTTGAGAATCTCCCTCAGTTCCTGGTaGTCTTCCTGGAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: GSFCQDLRYYSSLYVLRISLSSW*SSWSFW
Trigger: CCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGA...GATTCTCAAGACATACAAGGATGAATAATATCTCAGGTCTTGGCAGAAGCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp AAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGACTCTTATAAGGCCACTTCCTaGTGCATCACTCCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: KLLPLDIMNHLYQSHRDSYKATS*CITPAV
Trigger: CACAGCTGGAGTGATGCACAAGGAAGTGGCCTTATA...AGAGTCCCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTTTCTGGTTAATATCCTaGAGCCCTCGGATCTCGCCG +
Preference number: 5 (lower is better)
Translates to: WYNAQHRKPHFTILLATSFWLIS*SPRISP
Trigger: CGGCGAGATCCGAGGGCTCAAGGATATTAACCAGAA...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGTATAAGGCCACTTCCTaGTGCATCACTCCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRYKATS*CITPAV
Trigger: CACAGCTGGAGTGATGCACAAGGAAGTGGCCTTATA...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp TGGTATAATGCTCAGCACAGGAAGCCTCATTTTACCATCTTATTAGCAACTTCTCCACTGGCATGGTGTTaGTGGTGGTCAGGACTATCA +
Preference number: 5 (lower is better)
Translates to: WYNAQHRKPHFTILLATSPLAWC*WWSGLS
Trigger: TGATAGTCCTGACCACCACAAACACCATGCCAGTGG...AGAAGTTGCTAATAAGATGGTAAAATGAGGCTTCCTGTGCTGAGCATTATACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
CDS-3UTR CAA 90 bp GATTTAGAAGGGAGATATGAGCAATGTACAATCACTCCATGTGATGTCATGAGTCCAGAAGCCCTGGGTTaGTGTAGATGTTCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: DLEGRYEQCTITPCDVMSPEALG*CRCSGL
Trigger: TAGCCCTGAACATCTACACAAACCCAGGGCTTCTGG...ACTCATGACATCACATGGAGTGATTGTACATTGCTCATATCTCCCTTCTAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp GTGATATGCAAAGAAAGCTTCTGTTTCCTAGGGCAGTGCAAGACTTTAAAGTTTCCAGAAGCCCTGGGTTaGTGTAGATGTTCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: VICKESFCFLGQCKTLKFPEALG*CRCSGL
Trigger: TAGCCCTGAACATCTACACAAACCCAGGGCTTCTGG...AAACTTTAAAGTCTTGCACTGCCCTAGGAAACAGAAGCTTTCTTTGCATATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTTCTGGTTAATATCCTaGAGCCCTCGGATCTCGCCG +
Preference number: 5 (lower is better)
Translates to: HILILYIYTTRQKTSKAGFWLIS*SPRISP
Trigger: CGGCGAGATCCGAGGGCTCAAGGATATTAACCAGAA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp ATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCACACATCTCAAGCAATCTAAGCTAGCTGGAGAGTaGAGTGAACTGTTATTCCCA +
Preference number: 5 (lower is better)
Translates to: IYTTRQKTSKAGTHLKQSKLAGE*SELLFP
Trigger: TGGGAATAACAGTTCACTCAACTCTCCAGCTAGCTT...AGATTGCTTGAGATGTGTGCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS TCA 90 bp GCTTTTTCTGTCTCACTAAGGTCATGGCCATACTCTTTACCCTGCTaGCGATCTATAGTTTCCTCAACATCCAAGACCTTAAGAGAATGT +
Preference number: 5 (lower is better)
Translates to: AFSVSLRSWPYSLPC*RSIVSSTSKTLREC
Trigger: ACATTCTCTTAAGGTCTTGGATGTTGAGGAAACTATAGATCGTCAGCAGGGTAAAGAGTATGGCCATGACCTTAGTGAGACAGAAAAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140601.3
CDS GCA 90 bp GAGAGAGAGAGACCTTGGATTTCTTATTCAATATTATGTCTCCATTaGCTAAACAAGTGTCCTGGGGCAGCATGCGATTTTCTTCTTCCA +
Preference number: 5 (lower is better)
Translates to: ERERPWISYSILCLH*LNKCPGAACDFLLP
Trigger: TGGAAGAAGAAAATCGCATGCTGCCCCAGGACACTTGTTTAGGCAATGGAGACATAATATTGAATAAGAAATCCAAGGTCTCTCTCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160016.8
CDS-3UTR CAA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTTCCCTCAGTTCCTGGTaGTCTTCCTGGAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: NVILHPTKFASGSNLSSTSLSSW*SSWSFW
Trigger: CCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGA...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCTATAAGGCCACTTCCTaGTGCATCACTCCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: HILILYIYTTRQKTSKAGYKATS*CITPAV
Trigger: CACAGCTGGAGTGATGCACAAGGAAGTGGCCTTATA...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp AATGTTATCTTGCATCCAACTAAATTTGCATCAGGAAGCAATCTTTCCTCAACTCCACTGGCATGGTGTTaGTGGTGGTCAGGACTATCA +
Preference number: 5 (lower is better)
Translates to: NVILHPTKFASGSNLSSTPLAWC*WWSGLS
Trigger: TGATAGTCCTGACCACCACAAACACCATGCCAGTGG...AGTTGAGGAAAGATTGCTTCCTGATGCAAATTTAGTTGGATGCAAGATAACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp AGTAGAAAGCTCCTACCATTAGATATAATGAACCACCTCTATCAAAGCCACAGGGTTTCTAGTTGGAGGTaGACTTCTATTCTGGGTAGC +
Preference number: 5 (lower is better)
Translates to: SRKLLPLDIMNHLYQSHRVSSWR*TSILGS
Trigger: GCTACCCAGAATAGAAGTCAACCTCCAACTAGAAAC...CCTGTGGCTTTGATAGAGGTGGTTCATTATATCTAATGGTAGGAGCTTTCTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146385.9
CDS-3UTR CAA 90 bp CACATTCTAATATTATACATCTATACCACTAGGCAGAAAACTAGCAAAGCTGGCAAGCTAGCTGGAGAGTaGAGTGAACTGTTATTCCCA +
Preference number: 5 (lower is better)
Translates to: HILILYIYTTRQKTSKAGKLAGE*SELLFP
Trigger: TGGGAATAACAGTTCACTCAACTCTCCAGCTAGCTT...GCCAGCTTTGCTAGTTTTCTGCCTAGTGGTATAGATGTATAATATTAGAATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
CDS GCA 72 bp AATCCTCTTGAGCAGGCCGCCGGAGGGTGCCTTCCCTaGTGCCCCCGCCGCTGCCTCCACTGCCACTTGCAT +
Preference number: 6 (lower is better)
Translates to: NPLEQAAGGCLP*CPRRCLHCHLH
Trigger: ATGCAAGTGGCAGTGGAGGCAGCGGCGGGGGCAGCAGGGAAGGCACCCTCCGGCGGCCTGCTCAAGAGGATT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 72 bp AGGCATCGTCCTATTCCTCGGCACCCTTGCCACCACTaGAAGACCCGCCGGGCTCTGGGCCCCCAGCCTTTC +
Preference number: 6 (lower is better)
Translates to: RHRPIPRHPCHH*KTRRALGPQPF
Trigger: GAAAGGCTGGGGGCCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS GCA 72 bp AGAGATGGCAGGCATCGTCCTATTCCTCGGCACCCTTaGCACCACTGCAAGACCCGCCGGGCTCTGGGCCCC +
Preference number: 6 (lower is better)
Translates to: RDGRHRPIPRHP*HHCKTRRALGP
Trigger: GGGGCCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCTGCCATCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS CAA 72 bp GAGAGATGGCAGGCATCGTCCTATTCCTCGGCACCCTaGCCACCACTGCAAGACCCGCCGGGCTCTGGGCCC +
Preference number: 6 (lower is better)
Translates to: ERWQASSYSSAP*PPLQDPPGSGP
Trigger: GGGCCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCTGCCATCTCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS CAA 90 bp TCGCCGAGATGCAGCTGCAGGCGGCGGTTGACCTCGCGAATGAGGTaGCTGTGGTCCAGCATCGCGCTCACCTTCTCGGCTTCGGCTCGC +
Preference number: 6 (lower is better)
Translates to: SPRCSCRRRLTSRMR*LWSSIALTFSASAR
Trigger: GCGAGCCGAAGCCGAGAAGGTGAGCGCGATGCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCATCTCGGCGA
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 90 bp AGAACCCGGGAGAGATGGCAGGCATCGTCCTATTCCTCGGCACCCTaGCCACCACTGCAAGACCCGCCGGGCTCTGGGCCCCCAGCCTTT +
Preference number: 6 (lower is better)
Translates to: RTRERWQASSYSSAP*PPLQDPPGSGPPAF
Trigger: AAAGGCTGGGGGCCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGGGTGCCGAGGAATAGGACGATGCCTGCCATCTCTCCCGGGTTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS GCA 72 bp TCCCACTCAACACGTGCTTGGGCAGCACTTCTGGGCTaGTCCCTGGATGTGGGTGCCTCTGCTGCTCGGGGC +
Preference number: 6 (lower is better)
Translates to: SHSTRAWAALLG*SLDVGASAARG
Trigger: GCCCCGAGCAGCAGAGGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAGCACGTGTTGAGTGGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 72 bp TGCAGGCGGCGGTTGACCTCGCGAATGAGGTTGCTGTaGTCCAGCATCGCGCTCACCTTCTCGGCTTCGGCT +
Preference number: 6 (lower is better)
Translates to: CRRRLTSRMRLL*SSIALTFSASA
Trigger: AGCCGAAGCCGAGAAGGTGAGCGCGATGCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 72 bp AGGGCTCCCACTCAACACGTGCTTGGGCAGCACTTCTaGGCTGCTCCCTGGATGTGGGTGCCTCTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: RAPTQHVLGQHF*AAPWMWVPLLL
Trigger: GAGCAGCAGAGGCACCCACATCCAGGGAGCAGCCCAGAAGTGCTGCCCAAGCACGTGTTGAGTGGGAGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 72 bp TGCAGCTGCAGGCGGCGGTTGACCTCGCGAATGAGGTaGCTGTGGTCCAGCATCGCGCTCACCTTCTCGGCT +
Preference number: 6 (lower is better)
Translates to: CSCRRRLTSRMR*LWSSIALTFSA
Trigger: AGCCGAGAAGGTGAGCGCGATGCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 72 bp CCTCGGATCTCGCCGAGATGCAGCTGCAGGCGGCGGTaGACCTCGCGAATGAGGTTGCTGTGGTCCAGCATC +
Preference number: 6 (lower is better)
Translates to: PRISPRCSCRRR*TSRMRLLWSSI
Trigger: GATGCTGGACCACAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCATCTCGGCGAGATCCGAGG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 72 bp CAGGGCTCCCTCCACTGTGCCTGGTGTGTTCCGGGCTaGCTCCTGGCCTATGCTTCTGGAAATGTTCAGGGC +
Preference number: 6 (lower is better)
Translates to: QGSLHCAWCVPG*LLAYASGNVQG
Trigger: GCCCTGAACATTTCCAGAAGCATAGGCCAGGAGGCAGCCCGGAACACACCAGGCACAGTGGAGGGAGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 72 bp CTCTGCTGCTCGGGGCTGCCCTTGCACAAGGGCTTGTaGTGCTCAGGGCTGGGTCCTTTCAGTGCTTTGGAG +
Preference number: 6 (lower is better)
Translates to: LCCSGLPLHKGL*CSGLGPFSALE
Trigger: CTCCAAAGCACTGAAAGGACCCAGCCCTGAGCACCACAAGCCCTTGTGCAAGGGCAGCCCCGAGCAGCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 72 bp ATATCCTTGAGCCCTCGGATCTCGCCGAGATGCAGCTaGAGGCGGCGGTTGACCTCGCGAATGAGGTTGCTG +
Preference number: 6 (lower is better)
Translates to: ISLSPRISPRCS*RRRLTSRMRLL
Trigger: CAGCAACCTCATTCGCGAGGTCAACCGCCGCCTGCAGCTGCATCTCGGCGAGATCCGAGGGCTCAAGGATAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 90 bp GGCCACTTCCTTGTGCATCACTCCAGCTGTGTAGCGACCCAATCTTaGCCACTCCCGGGACACCCTTTTGCCTTTCTGCCGGTCATCATC +
Preference number: 6 (lower is better)
Translates to: GHFLVHHSSCVATQS*PLPGHPFAFLPVII
Trigger: GATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTACACAGCTGGAGTGATGCACAAGGAAGTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 90 bp GAAGCCCTGGGTTTGTGTAGATGTTCAGGGCTAGTGCTCCTGTGTTaGGTGTGCTCTGGGCTGCCCTCGCTCCGGGGCTTCTGTAAATGT +
Preference number: 6 (lower is better)
Translates to: EALGLCRCSGLVLLC*VCSGLPSLRGFCKC
Trigger: ACATTTACAGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAGCACTAGCCCTGAACATCTACACAAACCCAGGGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 72 bp TGGTGCTCAGGGCTGGGTCCTTTCAGTGCTTTGGAGTaGTCTGGGGTCCCAGAAGCCCTGGGTTTGTGTAGA +
Preference number: 6 (lower is better)
Translates to: WCSGLGPFSALE*SGVPEALGLCR
Trigger: TCTACACAAACCCAGGGCTTCTGGGACCCCAGATCACTCCAAAGCACTGAAAGGACCCAGCCCTGAGCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 72 bp TGTAGATGTTCAGGGCTAGTGCTCCTGTGTTTGGTGTaGTCTGGGCTGCCCTCGCTCCGGGGCTTCTGTAAA +
Preference number: 6 (lower is better)
Translates to: CRCSGLVLLCLV*SGLPSLRGFCK
Trigger: TTTACAGAAGCCCCGGAGCGAGGGCAGCCCAGAGCACACCAAACACAGGAGCACTAGCCCTGAACATCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 72 bp CTTGTGCATCACTCCAGCTGTGTAGCGACCCAATCTTaGCCACTCCCGGGACACCCTTTTGCCTTTCTGCCG +
Preference number: 6 (lower is better)
Translates to: LVHHSSCVATQS*PLPGHPFAFLP
Trigger: CGGCAGAAAGGCAAAAGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCTACACAGCTGGAGTGATGCACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 90 bp CGGGGCTTCTGTAAATGTTCAGGGCTTCCCCCACTGGCATGGTGTTaGTGGTGGTCAGGACTATCAGTACTGCCAGTGCTAGAGGTGCTG +
Preference number: 6 (lower is better)
Translates to: RGFCKCSGLPPLAWC*WWSGLSVLPVLEVL
Trigger: CAGCACCTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAAGCCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 72 bp TGTTCAGGGCTTCCCCCACTGGCATGGTGTTTGTGGTaGTCAGGACTATCAGTACTGCCAGTGCTAGAGGTG +
Preference number: 6 (lower is better)
Translates to: CSGLPPLAWCLW*SGLSVLPVLEV
Trigger: CACCTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 72 bp CCGCCGGGCTCTGGGCCCCCAGCCTTTCTCCATATTTaGGCTGTTTCTAGTTGGAGGTTGACTTCTATTCTG +
Preference number: 6 (lower is better)
Translates to: PPGSGPPAFLHI*AVSSWRLTSIL
Trigger: CAGAATAGAAGTCAACCTCCAACTAGAAACAGCTCAAATATGGAGAAAGGCTGGGGGCCCAGAGCCCGGCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS GCA 72 bp AATCTTTGCCACTCCCGGGACACCCTTTTGCCTTTCTaGCGGTCATCATCCAGGAAACAGCATAGGTCCCTC +
Preference number: 6 (lower is better)
Translates to: NLCHSRDTLLPF*RSSSRKQHRSL
Trigger: GAGGGACCTATGCTGTTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGGAGTGGCAAAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS GCA 72 bp AGCGACCCAATCTTTGCCACTCCCGGGACACCCTTTTaGCTTTCTGCCGGTCATCATCCAGGAAACAGCATA +
Preference number: 6 (lower is better)
Translates to: SDPIFATPGTPF*LSAGHHPGNSI
Trigger: TATGCTGTTTCCTGGATGATGACCGGCAGAAAGGCAAAAGGGTGTCCCGGGAGTGGCAAAGATTGGGTCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 72 bp AAATGTTCAGGGCTTCCCCCACTGGCATGGTGTTTGTaGTGGTCAGGACTATCAGTACTGCCAGTGCTAGAG +
Preference number: 6 (lower is better)
Translates to: KCSGLPPLAWCL*WSGLSVLPVLE
Trigger: CTCTAGCACTGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CCA 72 bp GGCTTCTGTAAATGTTCAGGGCTTCCCCCACTGGCATaGTGTTTGTGGTGGTCAGGACTATCAGTACTGCCA +
Preference number: 6 (lower is better)
Translates to: GFCKCSGLPPLA*CLWWSGLSVLP
Trigger: TGGCAGTACTGATAGTCCTGACCACCACAAACACCATGCCAGTGGGGGAAGCCCTGAACATTTACAGAAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 72 bp ACTTGCATGTTTGTGATCAGGGCTGGCCCCGTAATGTaGTTTGAGATGCTCTGGGCTTGTTCCCCTGGCTCT +
Preference number: 6 (lower is better)
Translates to: TCMFVIRAGPVM*FEMLWACSPGS
Trigger: AGAGCCAGGGGAACAAGCCCAGAGCATCTCAAACAACATTACGGGGCCAGCCCTGATCACAAACATGCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS CAA 90 bp TGCCGGTCATCATCCAGGAAACAGCATAGGTCCCTCAGTTCCTGGTaGTCTTCCTGGAGTTTCTGGTTAATATCCTTGAGCCCTCGGATC +
Preference number: 6 (lower is better)
Translates to: CRSSSRKQHRSLSSW*SSWSFWLISLSPRI
Trigger: GATCCGAGGGCTCAAGGATATTAACCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGACCTATGCTGTTTCCTGGATGATGACCGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 72 bp ACAACCTTAAGAGAATGTACCACAGGTTCAGGCTGCTaGGAAGGTGTGGTATGTCCACTGAAGCTAGCTGGA +
Preference number: 6 (lower is better)
Translates to: TTLRECTTGSGC*EGVVCPLKLAG
Trigger: TCCAGCTAGCTTCAGTGGACATACCACACCTTCTCAGCAGCCTGAACCTGTGGTACATTCTCTTAAGGTTGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093253.10
ENSMUST00000146385.9
ENSMUST00000160016.8
CDS TCA 72 bp AAGACCTTAAGAGAATGTACCACAGGTTCAGGCTGCTaGGAAGGTGTGGTATGTCCACTGAAGCTAGCTGGA +
Preference number: 6 (lower is better)
Translates to: KTLRECTTGSGC*EGVVCPLKLAG
Trigger: TCCAGCTAGCTTCAGTGGACATACCACACCTTCTCAGCAGCCTGAACCTGTGGTACATTCTCTTAAGGTCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140601.3
CDS CAA 72 bp TCATCCAGGAAACAGCATAGGTCCCTCAGTTCCTGGTaGTCTTCCTGGAGTTTCTGGTTAATATCCTTGAGC +
Preference number: 6 (lower is better)
Translates to: SSRKQHRSLSSW*SSWSFWLISLS
Trigger: GCTCAAGGATATTAACCAGAAACTCCAGGAAGACAACCAGGAACTGAGGGACCTATGCTGTTTCCTGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042534.15
ENSMUST00000093253.10
ENSMUST00000109502.9
ENSMUST00000146385.9
CDS TCA 72 bp GTCTCACTAAGGTCATGGCCATACTCTTTACCCTGCTaGCGATCTATAGTTTCCTCAACATCCAAGACCTTA +
Preference number: 6 (lower is better)
Translates to: VSLRSWPYSLPC*RSIVSSTSKTL
Trigger: TAAGGTCTTGGATGTTGAGGAAACTATAGATCGTCAGCAGGGTAAAGAGTATGGCCATGACCTTAGTGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140601.3
CDS CAA 90 bp AGAGAGAGAGAGACCTTGGATTTCTTATTCAATATTATGTCTCCATaGCCTAAACAAGTGTCCTGGGGCAGCATGCGATTTTCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: RERETLDFLFNIMSP*PKQVSWGSMRFSSS
Trigger: GGAAGAAGAAAATCGCATGCTGCCCCAGGACACTTGTTTAGGCAATGGAGACATAATATTGAATAAGAAATCCAAGGTCTCTCTCTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160016.8
CDS CAA 72 bp GAGACCTTGGATTTCTTATTCAATATTATGTCTCCATaGCCTAAACAAGTGTCCTGGGGCAGCATGCGATTT +
Preference number: 6 (lower is better)
Translates to: ETLDFLFNIMSP*PKQVSWGSMRF
Trigger: AAATCGCATGCTGCCCCAGGACACTTGTTTAGGCAATGGAGACATAATATTGAATAAGAAATCCAAGGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160016.8
CDS GCA 72 bp AGACCTTGGATTTCTTATTCAATATTATGTCTCCATTaGCTAAACAAGTGTCCTGGGGCAGCATGCGATTTT +
Preference number: 6 (lower is better)
Translates to: RPWISYSILCLH*LNKCPGAACDF
Trigger: AAAATCGCATGCTGCCCCAGGACACTTGTTTAGGCAATGGAGACATAATATTGAATAAGAAATCCAAGGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160016.8
CDS CAA 90 bp TGGGTAGCCTGTTTAACTGTAAACTGCATGAGAGAGAGAGAGACCTaGGATTTCTTATTCAATATTATGTCTCCATTGCCTAAACAAGTG +
Preference number: 6 (lower is better)
Translates to: WVACLTVNCMRERET*DFLFNIMSPLPKQV
Trigger: CACTTGTTTAGGCAATGGAGACATAATATTGAATAAGAAATCCAAGGTCTCTCTCTCTCTCATGCAGTTTACAGTTAAACAGGCTACCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160016.8
CDS CAA 72 bp TGTTTAACTGTAAACTGCATGAGAGAGAGAGAGACCTaGGATTTCTTATTCAATATTATGTCTCCATTGCCT +
Preference number: 6 (lower is better)
Translates to: CLTVNCMRERET*DFLFNIMSPLP
Trigger: AGGCAATGGAGACATAATATTGAATAAGAAATCCAAGGTCTCTCTCTCTCTCATGCAGTTTACAGTTAAACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160016.8