Pregenerated sensors for CCDC83 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030617Ensembl transcript IDs: ENSMUST00000040413.2, ENSMUST00000107220.8, ENSMUST00000107221.9
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGATGTaGGGGGATCAGGGTAGAGAGAGACAAAGATGCTTCAGGGCCGTC | + |
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Preference number: 1 (lower is better) Translates to: EEVPAQEFPGFLVQM*GDQGRERQRCFRAV Trigger: GACGGCCCTGAAGCATCTTTGTCTCTCTCTACCCTGATCCCCTCACATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| 3UTR TCA 90 bp | TATAGAATTCCAAGTTCAAAAACATTCTCCACTGAATGTCCTTACTaGCGCCAGTGCCGGCTTCCTGCTCATCCGTTCCGCCTTCCTTTG | + |
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Preference number: 1 (lower is better) Translates to: YRIPSSKTFSTECPY*RQCRLPAHPFRLPL Trigger: CAAAGGAAGGCGGAACGGATGAGCAGGAAGCCGGCACTGGCGTCAGTAAGGACATTCAGTGGAGAATGTTTTTGAACTTGGAATTCTATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR TCA 90 bp | ATACTGGGAAAGGAGTTCTCGGGATACCCTGAGAGCATTATGAAATaGTTCATAGGTCATGAAAGTCTGCCCCTAAAGGAAGAGTTAGAG | + |
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Preference number: 1 (lower is better) Translates to: ILGKEFSGYPESIMK*FIGHESLPLKEELE Trigger: CTCTAACTCTTCCTTTAGGGGCAGACTTTCATGACCTATGAATCATTTCATAATGCTCTCAGGGTATCCCGAGAACTCCTTTCCCAGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| 3UTR GCA 90 bp | GATGTTTGTTTCTGCGTTATCTTTTTAGAGTTAATATTGCTTGGGTaGTGTGCCTCCTACATTAGTGATGTGTCTTGTCCTGCTCCGAGA | + |
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Preference number: 1 (lower is better) Translates to: DVCFCVIFLELILLG*CASYISDVSCPAPR Trigger: TCTCGGAGCAGGACAAGACACATCACTAATGTAGGAGGCACAGCACCCAAGCAATATTAACTCTAAAAAGATAACGCAGAAACAAACATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR-3UTR TCA 90 bp | CGGCTTCCTGCTCATCCGTTCCGCCTTCCTTTGTTTGCCATTTTAAAAGAACAGTCCTTTTCAAATTTCTaGATTTCCCACCGGCGTCTT | + |
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Preference number: 2 (lower is better) Translates to: RLPAHPFRLPLFAILKEQSFSNF*ISHRRL Trigger: AAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGA...CTGTTCTTTTAAAATGGCAAACAAAGGAAGGCGGAACGGATGAGCAGGAAGCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTGCCGGCTTCCTGCTCATCCGTTCCGCCTTCCTTTGTTTGCCATTTTAAAATTAATATTGCTTGGGTaGTGTGCCTCCTACATTAGT | + |
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Preference number: 2 (lower is better) Translates to: QCRLPAHPFRLPLFAILKLILLG*CASYIS Trigger: ACTAATGTAGGAGGCACAGCACCCAAGCAATATTAA...TTTTAAAATGGCAAACAAAGGAAGGCGGAACGGATGAGCAGGAAGCCGGCACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGTTCAAAAACATTCTCCACTGAATGTCCTTACTGACGCCAGTGCCGGCTTCAGAGTTAATATTGCTTaGGTGCTGTGCCTCCTACAT | + |
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Preference number: 2 (lower is better) Translates to: QVQKHSPLNVLTDASAGFRVNIA*VLCLLH Trigger: ATGTAGGAGGCACAGCACCCAAGCAATATTAACTCT...GAAGCCGGCACTGGCGTCAGTAAGGACATTCAGTGGAGAATGTTTTTGAACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR CAA 90 bp | TGTCCTGCTGATGTTTGTTTCTGCGTTATCTTTTTAGAGTTAATATaGCTTGGGTGCTGTGCCTCCTACATTAGTGATGTGTCTTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: CPADVCFCVIFLELI*LGCCASYISDVSCP Trigger: AGGACAAGACACATCACTAATGTAGGAGGCACAGCACCCAAGCAATATTAACTCTAAAAAGATAACGCAGAAACAAACATCAGCAGGACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR-3UTR GCA 90 bp | TTAATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCAGTTAGTAGGAGCGGTGTaGACTTCTATTCTCCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: LIKAPFQISEFPTGVFQQLVGAV*TSILQL Trigger: AAGCTGGAGAATAGAAGTGCACACCGCTCCTACTAA...CTGCTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTCTTGTCCTGCTCCGAGAGAGTGCATTCTGCATTCTATTTTATATTTGATTTTCTATTCTCCAGCTTaGCTGGCTTTCTCTTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: VSCPAPRECILHSILYLIFYSPA*LAFSSD Trigger: ATCTGAAGAGAAAGCCAGGCAAGCTGGAGAATAGAA...AATCAAATATAAAATAGAATGCAGAATGCACTCTCTCGGAGCAGGACAAGACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTCTTGTCCTGCTCCGAGAGAGTGCATTCTGCATTCTATTTTATATTTGATTATTCTCCAGCTTGCCTaGCTTTCTCTTCAGATTTGT | + |
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Preference number: 2 (lower is better) Translates to: VSCPAPRECILHSILYLIILQLA*LSLQIC Trigger: ACAAATCTGAAGAGAAAGCCAGGCAAGCTGGAGAAT...AATCAAATATAAAATAGAATGCAGAATGCACTCTCTCGGAGCAGGACAAGACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR TCA 72 bp | CCAAGTTCAAAAACATTCTCCACTGAATGTCCTTACTaGCGCCAGTGCCGGCTTCCTGCTCATCCGTTCCGC | + |
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Preference number: 3 (lower is better) Translates to: PSSKTFSTECPY*RQCRLPAHPFR Trigger: GCGGAACGGATGAGCAGGAAGCCGGCACTGGCGTCAGTAAGGACATTCAGTGGAGAATGTTTTTGAACTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR TCA 72 bp | CCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGATGTaGGGGGATCAGGGTAGAGAGAGACAAAGATGCTTC | + |
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Preference number: 3 (lower is better) Translates to: PAQEFPGFLVQM*GDQGRERQRCF Trigger: GAAGCATCTTTGTCTCTCTCTACCCTGATCCCCTCACATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| 3UTR GCA 72 bp | ATTAGTAGGAGCGGTGTGCACTTCTATTCTCCAGCTTaGCTGGCTTTCTCTTCAGATTTGTCCGGTCGTTCT | + |
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Preference number: 3 (lower is better) Translates to: ISRSGVHFYSPA*LAFSSDLSGRS Trigger: AGAACGACCGGACAAATCTGAAGAGAAAGCCAGGCAAGCTGGAGAATAGAAGTGCACACCGCTCCTACTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR TCA 72 bp | AAGGAGTTCTCGGGATACCCTGAGAGCATTATGAAATaGTTCATAGGTCATGAAAGTCTGCCCCTAAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: KEFSGYPESIMK*FIGHESLPLKE Trigger: TTCCTTTAGGGGCAGACTTTCATGACCTATGAATCATTTCATAATGCTCTCAGGGTATCCCGAGAACTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| 3UTR GCA 72 bp | TTCTGCGTTATCTTTTTAGAGTTAATATTGCTTGGGTaGTGTGCCTCCTACATTAGTGATGTGTCTTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: FCVIFLELILLG*CASYISDVSCP Trigger: AGGACAAGACACATCACTAATGTAGGAGGCACAGCACCCAAGCAATATTAACTCTAAAAAGATAACGCAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR GCA 90 bp | CCCTGGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGCTCTGCTTTGACCACTaGTTACACAAGGTTCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: PWPREEVPAQEFPGFLVQLCFDH*LHKVLP Trigger: CGGCAGAACCTTGTGTAAGCAGTGGTCAAAGCAGAG...CTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CCA 90 bp | GGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGATGTCAGGGGTTACCAGTGTaGGGAGAAGACCAGAGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: GPGKRSRLRSSLDFLYRCQGLPV*GEDQRA Trigger: AGCTCTCTGGTCTTCTCCCCACACTGGTAACCCCTG...ACATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| 3UTR CAA 72 bp | GGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTaGTACAGATGTGAGGGGATCAGGGTAGAGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: GKRSRLRSSLDF*YRCEGIRVERD Trigger: GTCTCTCTCTACCCTGATCCCCTCACATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR GCA 90 bp | AGTTCCCTGGATTTCTTGTACAGATGTGAGGGGATCAGGGTAGAGAGAGACAAAGCTCCAGAGCTGCAGTaGAAAGGGAGCCAGGATCCT | + |
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Preference number: 4 (lower is better) Translates to: SSLDFLYRCEGIRVERDKAPELQ*KGSQDP Trigger: AGGATCCTGGCTCCCTTTGCACTGCAGCTCTGGAGC...TTTGTCTCTCTCTACCCTGATCCCCTCACATCTGTACAAGAAATCCAGGGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CCA 90 bp | GACCCTGGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACCTCTCTTGTTACTATTaGTGCCTCATCCAAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: DPGPGKRSRLRSSLDFLYLSCYY*CLIQIL Trigger: AAGAATTTGGATGAGGCACCAATAGTAACAAGAGAG...GTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCCAGGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR TCA 90 bp | CAGAGTAGTTATTCCAACCAAGACAATGATAGCACAGAGGAGAAGAGGGCCTTCAGGGAACCTCTGCTTTaGCCACTGCTTACACAAGGT | + |
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Preference number: 4 (lower is better) Translates to: QSSYSNQDNDSTEEKRAFREPLL*PLLTQG Trigger: ACCTTGTGTAAGCAGTGGTCAAAGCAGAGGTTCCCT...GAAGGCCCTCTTCTCCTCTGTGCTATCATTGTCTTGGTTGGAATAACTACTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR GCA 90 bp | CAAGTTCAAAAACATTCTCCACTGAATGTCCTTACTGACGCCAGTGCCGGCTTCCCATTTTTCCTTCATTaGCTCCTCCACTTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QVQKHSPLNVLTDASAGFPFFLH*LLHFLS Trigger: AGAGAGGAAGTGGAGGAGGCAATGAAGGAAAAATGG...GAAGCCGGCACTGGCGTCAGTAAGGACATTCAGTGGAGAATGTTTTTGAACTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR GCA 90 bp | CAGAGTAGTTATTCCAACCAAGACAATGATAGCACAGAGGAGAAGAGGGCCTTCCCATTTTTCCTTCATTaGCTCCTCCACTTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QSSYSNQDNDSTEEKRAFPFFLH*LLHFLS Trigger: AGAGAGGAAGTGGAGGAGGCAATGAAGGAAAAATGG...GAAGGCCCTCTTCTCCTCTGTGCTATCATTGTCTTGGTTGGAATAACTACTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CCA 90 bp | GACAGAGTAGTTATTCCAACCAAGACAATGATAGCACAGAGGAGAAGAGGGCCTCTCAGCTTCTTGATATaGAACATGAATCGCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: DRVVIPTKTMIAQRRRGPLSFLI*NMNRST Trigger: GGTGGAGCGATTCATGTTCCATATCAAGAAGCTGAG...AGGCCCTCTTCTCCTCTGTGCTATCATTGTCTTGGTTGGAATAACTACTCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CCA 90 bp | GACAGAGTAGTTATTCCAACCAAGACAATGATAGCACAGAGGAGAAGAGGGCCTCCATATTATGCAGACTaGATCAGGGGTTACCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: DRVVIPTKTMIAQRRRGPPYYAD*IRGYQC Trigger: ACACTGGTAACCCCTGATCCAGTCTGCATAATATGG...AGGCCCTCTTCTCCTCTGTGCTATCATTGTCTTGGTTGGAATAACTACTCTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR GCA 90 bp | CAGTGCCGGCTTCCTGCTCATCCGTTCCGCCTTCCTTTGTTTGCCATTTTAAAAATAAGATTCTTTATGTaGCAATTCTGTTCCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QCRLPAHPFRLPLFAILKIRFFM*QFCSSF Trigger: GAAGGAGGAACAGAATTGGCACATAAAGAATCTTAT...TTTTAAAATGGCAAACAAAGGAAGGCGGAACGGATGAGCAGGAAGCCGGCACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR GCA 90 bp | AGTTCCCTGGATTTCTTGTACAGATGTGAGGGGATCAGGGTAGAGAGAGACAAAATAAGATTCTTTATGTaGCAATTCTGTTCCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: SSLDFLYRCEGIRVERDKIRFFM*QFCSSF Trigger: GAAGGAGGAACAGAATTGGCACATAAAGAATCTTAT...TTTGTCTCTCTCTACCCTGATCCCCTCACATCTGTACAAGAAATCCAGGGAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CCA 90 bp | TTAATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCAGCTCAGCTTCTTGATATaGAACATGAATCGCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: LIKAPFQISEFPTGVFQQLSFLI*NMNRST Trigger: GGTGGAGCGATTCATGTTCCATATCAAGAAGCTGAG...CTGCTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| 3UTR CAA 72 bp | GATGTTTGTTTCTGCGTTATCTTTTTAGAGTTAATATaGCTTGGGTGCTGTGCCTCCTACATTAGTGATGTG | + |
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Preference number: 4 (lower is better) Translates to: DVCFCVIFLELI*LGCCASYISDV Trigger: CACATCACTAATGTAGGAGGCACAGCACCCAAGCAATATTAACTCTAAAAAGATAACGCAGAAACAAACATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR GCA 90 bp | GTATTTAACATTTCTAGCAATGCAAGAAAATACTGGGAAAGGAGTTCTCGGGATCAAAACTCCATATTATaGAGACTGGATCAGGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: VFNISSNARKYWERSSRDQNSIL*RLDQGL Trigger: TAACCCCTGATCCAGTCTGCATAATATGGAGTTTTG...ATCCCGAGAACTCCTTTCCCAGTATTTTCTTGCATTGCTAGAAATGTTAAATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CCA 90 bp | GTATTAATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCTCTCTTGTTACTATTaGTGCCTCATCCAAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: VLIKAPFQISEFPTGVFQLSCYY*CLIQIL Trigger: AAGAATTTGGATGAGGCACCAATAGTAACAAGAGAG...CTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTATTAATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR CCA 90 bp | TCAGGCACTGTAGACAAACAGTTAAAAATATATAGCCCACTTTGTGTATTAAGGTTCCTCTGTTTCAGTTaGATCATTGTTTCTCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SGTVDKQLKIYSPLCVLRFLCFS*IIVSLD Trigger: ATCCAGAGAAACAATGATCCAACTGAAACAGAGGAA...CCTTAATACACAAAGTGGGCTATATATTTTTAACTGTTTGTCTACAGTGCCTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS GCA 90 bp | TACCAGTGTGGGGAGAAGACCAGAGAGCTTGCTCCAGAGCTGCAGTaGAAAGGGAGCCAGGATCCTAAGGGAACCTCTGCTTTGACCACT | + |
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Preference number: 5 (lower is better) Translates to: YQCGEKTRELAPELQ*KGSQDPKGTSALTT Trigger: AGTGGTCAAAGCAGAGGTTCCCTTAGGATCCTGGCTCCCTTTGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACACTGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | ACCCTGGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACACCTCCACTTCCTCTCTaGTTACTATTGGTGCCTCAT | + |
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Preference number: 5 (lower is better) Translates to: TLAQGRGPGSGVPWISCTPPLPL*LLLVPH Trigger: ATGAGGCACCAATAGTAACAAGAGAGGAAGTGGAGG...TGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCCAGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | GGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGATGTGCGCTCCCTACATTCTaGTACTCTTCCCAATATTCC | + |
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Preference number: 5 (lower is better) Translates to: GPGKRSRLRSSLDFLYRCALPTF*YSSQYS Trigger: GGAATATTGGGAAGAGTACAAGAATGTAGGGAGCGC...ACATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | TGGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGATGAGCCATGCTGTTTGTTaGTCCTGGTCCAAAACTCCA | + |
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Preference number: 5 (lower is better) Translates to: WPREEVPAQEFPGFLVQMSHAVC*SWSKTP Trigger: TGGAGTTTTGGACCAGGACAAACAAACAGCATGGCT...CATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS TCA 90 bp | CCGCATTCTCCTTTATTTCACGATGATAGTCCAGAAGGGCCTCACTaGCAGGCAGCTTCGAGTCTTTTGGTGGTCCATCAGGGGCATCCT | + |
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Preference number: 5 (lower is better) Translates to: PHSPLFHDDSPEGPH*QAASSLLVVHQGHP Trigger: AGGATGCCCCTGATGGACCACCAAAAGACTCGAAGCTGCCTGTCAGTGAGGCCCTTCTGGACTATCATCGTGAAATAAAGGAGAATGCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS CCA 90 bp | GTCCAAAACTCCATATTATGCAGACTGGATCAGGGGTTACCAGTGTaGGGAGAAGACCAGAGAGCTTGCTCCAGAGCTGCAGTGCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: VQNSILCRLDQGLPV*GEDQRACSRAAVQR Trigger: CCTTTGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACACTGGTAACCCCTGATCCAGTCTGCATAATATGGAGTTTTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | CAGTGCCGGCTTCCTGCTCATCCGTTCCGCCTTCCTTTGTTTGCCATTTTAAAATCAGGGGCATCCTTTTaGCTTCCTTTGGCCGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: QCRLPAHPFRLPLFAILKSGASF*LPLAEL Trigger: CAGCTCGGCCAAAGGAAGCAAAAAGGATGCCCCTGA...TTTTAAAATGGCAAACAAAGGAAGGCGGAACGGATGAGCAGGAAGCCGGCACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR CAA 90 bp | CCCTGGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGGCGTCTATTCCTCTCTaGGTACTTTTGATTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: PWPREEVPAQEFPGFLVQASIPL*VLLILF Trigger: GAAAAGAATCAAAAGTACCAAGAGAGGAATAGACGC...CTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCCAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | GGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGATGTCAAGCTTGCCTCCTGTaGTCTTTCAAACTCCCATTT | + |
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Preference number: 5 (lower is better) Translates to: GPGKRSRLRSSLDFLYRCQACLL*SFKLPF Trigger: AAATGGGAGTTTGAAAGACAACAGGAGGCAAGCTTG...ACATCTGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS CCA 90 bp | GGTTGCTCCCCAGTAATAGGTCCAACATGTCTTCACTCCCCTCTTTaGAGGGCAGCTGCAAATTCTCCTCTGTGTCTGCTTCTGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: GCSPVIGPTCLHSPL*RAAANSPLCLLLPN Trigger: ATTTGGCAGAAGCAGACACAGAGGAGAATTTGCAGCTGCCCTCCAAAGAGGGGAGTGAAGACATGTTGGACCTATTACTGGGGAGCAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS-3UTR CAA 90 bp | ACCCTGGCCCAGGGAAGAGGTCCCGGCTCAGGAGTTCCCTGGATTTCTTGTACAGTTTCAGTTGGATCATaGTTTCTCTGGATATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: TLAQGRGPGSGVPWISCTVSVGS*FLWISS Trigger: AGAGGATATCCAGAGAAACAATGATCCAACTGAAAC...TGTACAAGAAATCCAGGGAACTCCTGAGCCGGGACCTCTTCCCTGGGCCAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS CCA 90 bp | TTTACGTATTCCTTGAAATCCTGTTCATCTTCATGCAGTAAGTGCTaGGTGATGGAGCTCTCCATCTCTGGGTTGGAGCCGTCTTTACTC | + |
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Preference number: 5 (lower is better) Translates to: FTYSLKSCSSSCSKC*VMELSISGLEPSLL Trigger: GAGTAAAGACGGCTCCAACCCAGAGATGGAGAGCTCCATCACCCAGCACTTACTGCATGAAGATGAACAGGATTTCAAGGAATACGTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS GCA 90 bp | CAAGCTTGCCTCCTGTTGTCTTTCAAACTCCCATTTTTCCTTCATTaGCTCCTCCACTTCCTCTCTTGTTACTATTGGTGCCTCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: QACLLLSFKLPFFLH*LLHFLSCYYWCLIQ Trigger: TTGGATGAGGCACCAATAGTAACAAGAGAGGAAGTGGAGGAGGCAATGAAGGAAAAATGGGAGTTTGAAAGACAACAGGAGGCAAGCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS GCA 90 bp | AGTAATAGGTCCAACATGTCTTCACTCCCCTCTTTGGAGGGCAGCTaGAAATTCTCCTCTGTGTCTGCTTCTGCCAAATTTAAAGATTCG | + |
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Preference number: 5 (lower is better) Translates to: SNRSNMSSLPSLEGS*KFSSVSASAKFKDS Trigger: CGAATCTTTAAATTTGGCAGAAGCAGACACAGAGGAGAATTTGCAGCTGCCCTCCAAAGAGGGGAGTGAAGACATGTTGGACCTATTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS GCA 90 bp | AAGTTTACGTATTCCTTGAAATCCTGTTCATCTTCATGCAGTAAGTaGTGGGTGATGGAGCTCTCCATCTCTGGGTTGGAGCCGTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: KFTYSLKSCSSSCSK*WVMELSISGLEPSL Trigger: TAAAGACGGCTCCAACCCAGAGATGGAGAGCTCCATCACCCAGCACTTACTGCATGAAGATGAACAGGATTTCAAGGAATACGTAAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS TCA 90 bp | TTAGCCAGTCATTTTCCCAGATCTCTCGATAGTTGTTCTTGTCAATaGACCTTACAGCGTGCTGTGTGGCCCATTCTTTCCTCTGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: LASHFPRSLDSCSCQ*TLQRAVWPILSSVS Trigger: TGAAACAGAGGAAAGAATGGGCCACACAGCACGCTGTAAGGTTCATTGACAAGAACAACTATCGAGAGATCTGGGAAAATGACTGGCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS-3UTR CAA 90 bp | CGGCTTCCTGCTCATCCGTTCCGCCTTCCTTTGTTTGCCATTTTAAAAGAACAGGCGTCTATTCCTCTCTaGGTACTTTTGATTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: RLPAHPFRLPLFAILKEQASIPL*VLLILF Trigger: GAAAAGAATCAAAAGTACCAAGAGAGGAATAGACGC...CTGTTCTTTTAAAATGGCAAACAAAGGAAGGCGGAACGGATGAGCAGGAAGCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR CAA 90 bp | ATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCAGTGGGCGCTCCCTACATTCTaGTACTCTTCCCAATATTCC | + |
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Preference number: 5 (lower is better) Translates to: IKAPFQISEFPTGVFQQWALPTF*YSSQYS Trigger: GGAATATTGGGAAGAGTACAAGAATGTAGGGAGCGC...CCACTGCTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR CAA 90 bp | TCAGGCACTGTAGACAAACAGTTAAAAATATATAGCCCACTTTGTGTATTAAGGTCAGGGGCATCCTTTTaGCTTCCTTTGGCCGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: SGTVDKQLKIYSPLCVLRSGASF*LPLAEL Trigger: CAGCTCGGCCAAAGGAAGCAAAAAGGATGCCCCTGA...CCTTAATACACAAAGTGGGCTATATATTTTTAACTGTTTGTCTACAGTGCCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | TCAGGCACTGTAGACAAACAGTTAAAAATATATAGCCCACTTTGTGTATTAAGGAGAAGACCAGAGAGCTaGCTCCAGAGCTGCAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: SGTVDKQLKIYSPLCVLRRRPES*LQSCSA Trigger: TGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCT...CCTTAATACACAAAGTGGGCTATATATTTTTAACTGTTTGTCTACAGTGCCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | CAGAGTAGTTATTCCAACCAAGACAATGATAGCACAGAGGAGAAGAGGGCCTTCCTCAGCCTCATTTATTaGTATGCGCATTTCTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: QSSYSNQDNDSTEEKRAFLSLIY*YAHFFQ Trigger: TTGAAAGAAATGCGCATACAAATAAATGAGGCTGAG...GAAGGCCCTCTTCTCCTCTGTGCTATCATTGTCTTGGTTGGAATAACTACTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS TCA 90 bp | AAATTTAAAGATTCGTCTTCGGGTGTCACTTGTAGCCCAGCTGCTTaGGTAATGTACAGTTTCTTGGGTATTTTGAGATCCACAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: KFKDSSSGVTCSPAA*VMYSFLGILRSTSL Trigger: CAGACTTGTGGATCTCAAAATACCCAAGAAACTGTACATTACTCAAGCAGCTGGGCTACAAGTGACACCCGAAGACGAATCTTTAAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS-3UTR CAA 90 bp | ATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCAGTGGGTTTCAGTTGGATCATaGTTTCTCTGGATATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: IKAPFQISEFPTGVFQQWVSVGS*FLWISS Trigger: AGAGGATATCCAGAGAAACAATGATCCAACTGAAAC...CCACTGCTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS-3UTR CAA 90 bp | TCAGGCACTGTAGACAAACAGTTAAAAATATATAGCCCACTTTGTGTATTAAGGAAGGGAACCTCTGCTTaGACCACTGCTTACACAAGG | + |
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Preference number: 5 (lower is better) Translates to: SGTVDKQLKIYSPLCVLRKGTSA*TTAYTR Trigger: CCTTGTGTAAGCAGTGGTCAAAGCAGAGGTTCCCTT...CCTTAATACACAAAGTGGGCTATATATTTTTAACTGTTTGTCTACAGTGCCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS-3UTR CAA 90 bp | GTATTAATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCAAGCTTGCCTCCTGTaGTCTTTCAAACTCCCATTT | + |
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Preference number: 5 (lower is better) Translates to: VLIKAPFQISEFPTGVFQQACLL*SFKLPF Trigger: AAATGGGAGTTTGAAAGACAACAGGAGGCAAGCTTG...CTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTATTAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS TCA 90 bp | GAGCGCTCCCTACATTCTTGTACTCTTCCCAATATTCCTTTTCACTaGGTTTTTCAAGAAATAGCTTCTCAGCCTCATTTATTTGTATGC | + |
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Preference number: 5 (lower is better) Translates to: ERSLHSCTLPNIPFH*VFQEIASQPHLFVC Trigger: GCATACAAATAAATGAGGCTGAGAAGCTATTTCTTGAAAAACTCAGTGAAAAGGAATATTGGGAAGAGTACAAGAATGTAGGGAGCGCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS-3UTR CAA 90 bp | TTAATAAAAGCTCCTTTTCAAATTTCTGAATTTCCCACCGGCGTCTTTCAGCAGCTCAGCCTCATTTATTaGTATGCGCATTTCTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: LIKAPFQISEFPTGVFQQLSLIY*YAHFFQ Trigger: TTGAAAGAAATGCGCATACAAATAAATGAGGCTGAG...CTGCTGAAAGACGCCGGTGGGAAATTCAGAAATTTGAAAAGGAGCTTTTATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS GCA 72 bp | CAGGGGTTACCAGTGTGGGGAGAAGACCAGAGAGCTTaGTCCAGAGCTGCAGTGCAAAGGGAGCCAGGATCC | + |
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Preference number: 6 (lower is better) Translates to: QGLPVWGEDQRA*SRAAVQREPGS Trigger: GGATCCTGGCTCCCTTTGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACACTGGTAACCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS CAA 72 bp | TCAGGGGTTACCAGTGTGGGGAGAAGACCAGAGAGCTaGCTCCAGAGCTGCAGTGCAAAGGGAGCCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: SGVTSVGRRPES*LQSCSAKGARI Trigger: GATCCTGGCTCCCTTTGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACACTGGTAACCCCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS GCA 72 bp | AGTGTGGGGAGAAGACCAGAGAGCTTGCTCCAGAGCTaGAGTGCAAAGGGAGCCAGGATCCTAAGGGAACCT | + |
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Preference number: 6 (lower is better) Translates to: SVGRRPESLLQS*SAKGARILREP Trigger: AGGTTCCCTTAGGATCCTGGCTCCCTTTGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS GCA 72 bp | GGAACCTCTGCTTTGACCACTGCTTACACAAGGTTCTaGCGTGTGCAGGTCAGGGGGAAGGAAGTCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: GTSALTTAYTRF*RVQVRGKEVQK Trigger: CTTCTGGACTTCCTTCCCCCTGACCTGCACACGGCAGAACCTTGTGTAAGCAGTGGTCAAAGCAGAGGTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS CAA 72 bp | TGCAAAGGGAGCCAGGATCCTAAGGGAACCTCTGCTTaGACCACTGCTTACACAAGGTTCTGCCGTGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: CKGSQDPKGTSA*TTAYTRFCRVQ Trigger: CTGCACACGGCAGAACCTTGTGTAAGCAGTGGTCAAAGCAGAGGTTCCCTTAGGATCCTGGCTCCCTTTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS CCA 72 bp | TCCATATTATGCAGACTGGATCAGGGGTTACCAGTGTaGGGAGAAGACCAGAGAGCTTGCTCCAGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SILCRLDQGLPV*GEDQRACSRAA Trigger: TGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACACTGGTAACCCCTGATCCAGTCTGCATAATATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040413.2 |
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| CDS CAA 90 bp | TGGTTGCTCCCCAGTAATAGGTCCAACATGTCTTCACTCCCCTCTTaGGAGGGCAGCTGCAAATTCTCCTCTGTGTCTGCTTCTGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: WLLPSNRSNMSSLPS*EGSCKFSSVSASAK Trigger: TTTGGCAGAAGCAGACACAGAGGAGAATTTGCAGCTGCCCTCCAAAGAGGGGAGTGAAGACATGTTGGACCTATTACTGGGGAGCAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS GCA 72 bp | CAAGGGTCAGTGGGATGGTGGTATTGTCTCCACCACTaGATACGTAGGACTGTTTCCACTCCAAGTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: QGSVGWWYCLHH*IRRTVSTPSFS Trigger: GGAGAAACTTGGAGTGGAAACAGTCCTACGTATGCAGTGGTGGAGACAATACCACCATCCCACTGACCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107220.8 |
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| CDS CCA 72 bp | TCCTTGAAATCCTGTTCATCTTCATGCAGTAAGTGCTaGGTGATGGAGCTCTCCATCTCTGGGTTGGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: SLKSCSSSCSKC*VMELSISGLEP Trigger: CGGCTCCAACCCAGAGATGGAGAGCTCCATCACCCAGCACTTACTGCATGAAGATGAACAGGATTTCAAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS CAA 72 bp | CCCAGTAATAGGTCCAACATGTCTTCACTCCCCTCTTaGGAGGGCAGCTGCAAATTCTCCTCTGTGTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PSNRSNMSSLPS*EGSCKFSSVSA Trigger: AGCAGACACAGAGGAGAATTTGCAGCTGCCCTCCAAAGAGGGGAGTGAAGACATGTTGGACCTATTACTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS CCA 72 bp | CCAGTAATAGGTCCAACATGTCTTCACTCCCCTCTTTaGAGGGCAGCTGCAAATTCTCCTCTGTGTCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: PVIGPTCLHSPL*RAAANSPLCLL Trigger: AAGCAGACACAGAGGAGAATTTGCAGCTGCCCTCCAAAGAGGGGAGTGAAGACATGTTGGACCTATTACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS TCA 72 bp | GCTTCAATGCCAGTGGGCCCAAGTTTACGTATTCCTTaGAATCCTGTTCATCTTCATGCAGTAAGTGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: ASMPVGPSLRIP*NPVHLHAVSAG Trigger: CCCAGCACTTACTGCATGAAGATGAACAGGATTTCAAGGAATACGTAAACTTGGGCCCACTGGCATTGAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS GCA 72 bp | TATTCCTTGAAATCCTGTTCATCTTCATGCAGTAAGTaGTGGGTGATGGAGCTCTCCATCTCTGGGTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: YSLKSCSSSCSK*WVMELSISGLE Trigger: CTCCAACCCAGAGATGGAGAGCTCCATCACCCAGCACTTACTGCATGAAGATGAACAGGATTTCAAGGAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS CAA 90 bp | TCAAGCTTGCCTCCTGTTGTCTTTCAAACTCCCATTTTTCCTTCATaGCCTCCTCCACTTCCTCTCTTGTTACTATTGGTGCCTCATCCA | + |
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Preference number: 6 (lower is better) Translates to: SSLPPVVFQTPIFPS*PPPLPLLLLLVPHP Trigger: TGGATGAGGCACCAATAGTAACAAGAGAGGAAGTGGAGGAGGCAATGAAGGAAAAATGGGAGTTTGAAAGACAACAGGAGGCAAGCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS CAA 90 bp | ACAGTCATTAGCTTCAATGCCAGTGGGCCCAAGTTTACGTATTCCTaGAAATCCTGTTCATCTTCATGCAGTAAGTGCTGGGTGATGGAG | + |
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Preference number: 6 (lower is better) Translates to: TVISFNASGPKFTYS*KSCSSSCSKCWVME Trigger: CTCCATCACCCAGCACTTACTGCATGAAGATGAACAGGATTTCAAGGAATACGTAAACTTGGGCCCACTGGCATTGAAGCTAATGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS TCA 72 bp | CATTTTCCCAGATCTCTCGATAGTTGTTCTTGTCAATaGACCTTACAGCGTGCTGTGTGGCCCATTCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: HFPRSLDSCSCQ*TLQRAVWPILS Trigger: GGAAAGAATGGGCCACACAGCACGCTGTAAGGTTCATTGACAAGAACAACTATCGAGAGATCTGGGAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS TCA 72 bp | GATTCGTCTTCGGGTGTCACTTGTAGCCCAGCTGCTTaGGTAATGTACAGTTTCTTGGGTATTTTGAGATCC | + |
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Preference number: 6 (lower is better) Translates to: DSSSGVTCSPAA*VMYSFLGILRS Trigger: GGATCTCAAAATACCCAAGAAACTGTACATTACTCAAGCAGCTGGGCTACAAGTGACACCCGAAGACGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107221.9 |
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| CDS GCA 72 bp | CTCCTGTTGTCTTTCAAACTCCCATTTTTCCTTCATTaGCTCCTCCACTTCCTCTCTTGTTACTATTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: LLLSFKLPFFLH*LLHFLSCYYWC Trigger: GCACCAATAGTAACAAGAGAGGAAGTGGAGGAGGCAATGAAGGAAAAATGGGAGTTTGAAAGACAACAGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS CAA 90 bp | CCAATTCTGTTCCTCCTTCAAGCGTCTATTCCTCTCTTGGTACTTTaGATTCTTTTCCCTCAGCTTCTTGATATGGAACATGAATCGCTC | + |
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Preference number: 6 (lower is better) Translates to: PILFLLQASIPLLVL*ILFPQLLDMEHESL Trigger: GAGCGATTCATGTTCCATATCAAGAAGCTGAGGGAAAAGAATCAAAAGTACCAAGAGAGGAATAGACGCTTGAAGGAGGAACAGAATTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS CAA 72 bp | TTCCTCCTTCAAGCGTCTATTCCTCTCTTGGTACTTTaGATTCTTTTCCCTCAGCTTCTTGATATGGAACAT | + |
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Preference number: 6 (lower is better) Translates to: FLLQASIPLLVL*ILFPQLLDMEH Trigger: ATGTTCCATATCAAGAAGCTGAGGGAAAAGAATCAAAAGTACCAAGAGAGGAATAGACGCTTGAAGGAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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| CDS GCA 72 bp | TTCTTCTCTTTCAGTTCTTTTATAAGATTCTTTATGTaGCAATTCTGTTCCTCCTTCAAGCGTCTATTCCTC | + |
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Preference number: 6 (lower is better) Translates to: FFSFSSFIRFFM*QFCSSFKRLFL Trigger: GAGGAATAGACGCTTGAAGGAGGAACAGAATTGGCACATAAAGAATCTTATAAAAGAACTGAAAGAGAAGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040413.2 ENSMUST00000107220.8 ENSMUST00000107221.9 |
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