Pregenerated sensors for CCDC7B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056018Ensembl transcript IDs: ENSMUST00000026912.8, ENSMUST00000108745.8, ENSMUST00000140887.8, ENSMUST00000148234.8
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGTTTTCAAATATTTTCATCATCATAGTCACTCGATTAGCCATTaGAGAAGGAGTTCCTGGCTGACTTTCAGTTTCAGTTTGAGATTC | + |
|
Preference number: 1 (lower is better) Translates to: LVFKYFHHHSHSISH*RRSSWLTFSFSLRF Trigger: GAATCTCAAACTGAAACTGAAAGTCAGCCAGGAACTCCTTCTTCAATGGCTAATCGAGTGACTATGATGATGAAAATATTTGAAAACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| 3UTR-3UTR TCA 90 bp | TTTGATCAGATGAGATCTGATCCTTCCTTTGTTCACCCAACTGTGTGTCACTCTCTTTCAGTTTCAGTTTaGGATTCTAAAGCTGAATGG | + |
|
Preference number: 2 (lower is better) Translates to: FDQMRSDPSFVHPTVCHSLSVSV*DSKAEW Trigger: CCATTCAGCTTTAGAATCTCAAACTGAAACTGAAAG...AGAGTGACACACAGTTGGGTGAACAAAGGAAGGATCAGATCTCATCTGATCAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148234.8 |
||
| 3UTR-3UTR CCA 90 bp | GACTTTACTCTCTCGGGATCTCTCAGCCTTTGTATTTCACCTTCTAGCAGGTTTGATTCTAAAGCTGAATaGGATGTTATGAACTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: DFTLSGSLSLCISPSSRFDSKAE*DVMNSS Trigger: TGAAGAGTTCATAACATCCCATTCAGCTTTAGAATC...AAACCTGCTAGAAGGTGAAATACAAAGGCTGAGAGATCCCGAGAGAGTAAAGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| 3UTR-3UTR CCA 90 bp | TTCTTAGTTCGCTCTAATTTGGTTGCAGACTTTACTCTCTCGGGATCTCTCAGCGATTCTAAAGCTGAATaGGATGTTATGAACTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: FLVRSNLVADFTLSGSLSDSKAE*DVMNSS Trigger: TGAAGAGTTCATAACATCCCATTCAGCTTTAGAATC...GCTGAGAGATCCCGAGAGAGTAAAGTCTGCAACCAAATTAGAGCGAACTAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| 3UTR-3UTR TCA 90 bp | AAGAAGGAGTTCCTGGCTGACTTTCAGTTTCAGTTTGAGATTCTAAAGCTGAATCTTTCAGTTTCAGTTTaGGATTCTAAAGCTGAATGG | + |
|
Preference number: 2 (lower is better) Translates to: KKEFLADFQFQFEILKLNLSVSV*DSKAEW Trigger: CCATTCAGCTTTAGAATCTCAAACTGAAACTGAAAG...ATTCAGCTTTAGAATCTCAAACTGAAACTGAAAGTCAGCCAGGAACTCCTTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| 3UTR-3UTR CAA 90 bp | GACTTTACTCTCTCGGGATCTCTCAGCCTTTGTATTTCACCTTCTAGCAGGTTTTCCACTCTGGGAAGGTaGAGGGGCTTCCAAAGTACT | + |
|
Preference number: 3 (lower is better) Translates to: DFTLSGSLSLCISPSSRFSTLGR*RGFQST Trigger: AGTACTTTGGAAGCCCCTCAACCTTCCCAGAGTGGA...AAACCTGCTAGAAGGTGAAATACAAAGGCTGAGAGATCCCGAGAGAGTAAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148234.8 |
||
| 3UTR-3UTR CAA 90 bp | AAGAAGGAGTTCCTGGCTGACTTTCAGTTTCAGTTTGAGATTCTAAAGCTGAATCTCTATTTGGTTGACTaGCTGCTGAAACCACTTGAA | + |
|
Preference number: 3 (lower is better) Translates to: KKEFLADFQFQFEILKLNLYLVD*LLKPLE Trigger: TTCAAGTGGTTTCAGCAGCAAGTCAACCAAATAGAG...ATTCAGCTTTAGAATCTCAAACTGAAACTGAAAGTCAGCCAGGAACTCCTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140887.8 |
||
| 3UTR TCA 72 bp | TCTTTACCTATCTCCTCTATTTGGTTGACTTGCTGCTaGAACCACTTGAAAAGAGACTCCAAAATCGGAGAA | + |
|
Preference number: 3 (lower is better) Translates to: SLPISSIWLTCC*NHLKRDSKIGE Trigger: TTCTCCGATTTTGGAGTCTCTTTTCAAGTGGTTTCAGCAGCAAGTCAACCAAATAGAGGAGATAGGTAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140887.8 |
||
| 3UTR TCA 72 bp | AAATATTTTCATCATCATAGTCACTCGATTAGCCATTaGAGAAGGAGTTCCTGGCTGACTTTCAGTTTCAGT | + |
|
Preference number: 3 (lower is better) Translates to: KYFHHHSHSISH*RRSSWLTFSFS Trigger: ACTGAAACTGAAAGTCAGCCAGGAACTCCTTCTTCAATGGCTAATCGAGTGACTATGATGATGAAAATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| 3UTR GCA 72 bp | CGCTCTCTTAGGCGACCTCTAATATGTTCAATTTTATaGATGAGCCTTGCAATTTGTGTAATGTTCTTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: RSLRRPLICSIL*MSLAICVMFFL Trigger: CAAAAAGAACATTACACAAATTGCAAGGCTCATGCATAAAATTGAACATATTAGAGGTCGCCTAAGAGAGCG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140887.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGTTGTGGCAATCCTCCTaGCCATTTCAGCATCTGATA | + |
|
Preference number: 4 (lower is better) Translates to: VESSSAPIHSGKVEGLPKLWQSS*PFQHLI Trigger: TATCAGATGCTGAAATGGTCAGGAGGATTGCCACAA...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGGCTGCTGAAACCACTTaGAAAGAGACTCCAAAATCA | + |
|
Preference number: 4 (lower is better) Translates to: VESSSAPIHSGKVEGLPKAAETT*KETPKS Trigger: TGATTTTGGAGTCTCTTTTCAAGTGGTTTCAGCAGC...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGAACATCTCTGACTTTTaGGGTAGGACATTATCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: VESSSAPIHSGKVEGLPKNISDF*GRTLSS Trigger: ACTCGATAATGTCCTACCTCAAAAGTCAGAGATGTT...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026912.8 ENSMUST00000108745.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGGGCTCTTTCACTAACTaGCCTTTTACTTTGATCAGA | + |
|
Preference number: 4 (lower is better) Translates to: VESSSAPIHSGKVEGLPKGSFTN*PFTLIR Trigger: TCTGATCAAAGTAAAAGGTCAGTTAGTGAAAGAGCC...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108745.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGTTTCACACTAATGTTTaGTGGATGCTTTGCACGTTT | + |
|
Preference number: 4 (lower is better) Translates to: VESSSAPIHSGKVEGLPKFHTNV*WMLCTF Trigger: AAACGTGCAAAGCATCCATCAAACATTAGTGTGAAA...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||
| CDS-3UTR TCA 90 bp | GACTTTACTCTCTCGGGATCTCTCAGCCTTTGTATTTCACCTTCTAGCAGGTTTACTGCTTCCTCCAGCTaGGCAGCAAATTGTGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: DFTLSGSLSLCISPSSRFTASSS*AANCEQ Trigger: CTGTTCACAATTTGCTGCTCAGCTGGAGGAAGCAGT...AAACCTGCTAGAAGGTGAAATACAAAGGCTGAGAGATCCCGAGAGAGTAAAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR GCA 90 bp | TTCTTAGTTCGCTCTAATTTGGTTGCAGACTTTACTCTCTCGGGATCTCTCAGCATATTCTTCCTTAACTaGTTCCTCCAGCTGAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FLVRSNLVADFTLSGSLSIFFLN*FLQLSS Trigger: GCTGCTCAGCTGGAGGAAGCAGTTAAGGAAGAATAT...GCTGAGAGATCCCGAGAGAGTAAAGTCTGCAACCAAATTAGAGCGAACTAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR TCA 90 bp | GACTTTACTCTCTCGGGATCTCTCAGCCTTTGTATTTCACCTTCTAGCAGGTTTACAGCACAACAAGAATaGACTCACATCATCACCAAC | + |
|
Preference number: 4 (lower is better) Translates to: DFTLSGSLSLCISPSSRFTAQQE*THIITN Trigger: GTTGGTGATGATGTGAGTTCATTCTTGTTGTGCTGT...AAACCTGCTAGAAGGTGAAATACAAAGGCTGAGAGATCCCGAGAGAGTAAAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR TCA 90 bp | TTCTTAGTTCGCTCTAATTTGGTTGCAGACTTTACTCTCTCGGGATCTCTCAGCACAGCACAACAAGAATaGACTCACATCATCACCAAC | + |
|
Preference number: 4 (lower is better) Translates to: FLVRSNLVADFTLSGSLSTAQQE*THIITN Trigger: GTTGGTGATGATGTGAGTTCATTCTTGTTGTGCTGT...GCTGAGAGATCCCGAGAGAGTAAAGTCTGCAACCAAATTAGAGCGAACTAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR TCA 90 bp | AAGAAGGAGTTCCTGGCTGACTTTCAGTTTCAGTTTGAGATTCTAAAGCTGAATACTGCTTCCTCCAGCTaGGCAGCAAATTGTGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: KKEFLADFQFQFEILKLNTASSS*AANCEQ Trigger: CTGTTCACAATTTGCTGCTCAGCTGGAGGAAGCAGT...ATTCAGCTTTAGAATCTCAAACTGAAACTGAAAGTCAGCCAGGAACTCCTTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR GCA 90 bp | ACCTATCTCCTCTATTTGGTTGACTTGCTGCTGAAACCACTTGAAAAGAGACTCATATTCTTCCTTAACTaGTTCCTCCAGCTGAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TYLLYLVDLLLKPLEKRLIFFLN*FLQLSS Trigger: GCTGCTCAGCTGGAGGAAGCAGTTAAGGAAGAATAT...GAGTCTCTTTTCAAGTGGTTTCAGCAGCAAGTCAACCAAATAGAGGAGATAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140887.8 |
||
| 3UTR CAA 72 bp | TTTTCTGATTTTCCAGGTTTCTTAGTTCGCTCTAATTaGGTTGCAGACTTTACTCTCTCGGGATCTCTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FSDFPGFLVRSN*VADFTLSGSLS Trigger: GCTGAGAGATCCCGAGAGAGTAAAGTCTGCAACCAAATTAGAGCGAACTAAGAAACCTGGAAAATCAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR TCA 90 bp | GACTTTACTCTCTCGGGATCTCTCAGCCTTTGTATTTCACCTTCTAGCAGGTTTTTTCACACTAATGTTTaGTGGATGCTTTGCACGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DFTLSGSLSLCISPSSRFFHTNV*WMLCTF Trigger: AAACGTGCAAAGCATCCATCAAACATTAGTGTGAAA...AAACCTGCTAGAAGGTGAAATACAAAGGCTGAGAGATCCCGAGAGAGTAAAGTC 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR TCA 90 bp | TTCTTAGTTCGCTCTAATTTGGTTGCAGACTTTACTCTCTCGGGATCTCTCAGCTTTCACACTAATGTTTaGTGGATGCTTTGCACGTTT | + |
|
Preference number: 4 (lower is better) Translates to: FLVRSNLVADFTLSGSLSFHTNV*WMLCTF Trigger: AAACGTGCAAAGCATCCATCAAACATTAGTGTGAAA...GCTGAGAGATCCCGAGAGAGTAAAGTCTGCAACCAAATTAGAGCGAACTAAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR TCA 90 bp | AAGAAGGAGTTCCTGGCTGACTTTCAGTTTCAGTTTGAGATTCTAAAGCTGAATTTGTGGCAATCCTCCTaGCCATTTCAGCATCTGATA | + |
|
Preference number: 4 (lower is better) Translates to: KKEFLADFQFQFEILKLNLWQSS*PFQHLI Trigger: TATCAGATGCTGAAATGGTCAGGAGGATTGCCACAA...ATTCAGCTTTAGAATCTCAAACTGAAACTGAAAGTCAGCCAGGAACTCCTTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS-3UTR CAA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGGATCTGATCCTTCCTTaGTTCACCCAACTGTGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: VESSSAPIHSGKVEGLPKDLILP*FTQLCV Trigger: GACACACAGTTGGGTGAACAAAGGAAGGATCAGATC...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026912.8 ENSMUST00000108745.8 |
||
| CDS-3UTR CAA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGCTCTATTTGGTTGACTaGCTGCTGAAACCACTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: VESSSAPIHSGKVEGLPKLYLVD*LLKPLE Trigger: TTCAAGTGGTTTCAGCAGCAAGTCAACCAAATAGAG...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||
| CDS-3UTR CAA 90 bp | GTGGAATCTTCCTCTGCTCCCATCCACTCTGGGAAGGTTGAGGGGCTTCCAAAGACCTATCTCCTCTATTaGGTTGACTTGCTGCTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: VESSSAPIHSGKVEGLPKTYLLY*VDLLLK Trigger: TTTCAGCAGCAAGTCAACCAAATAGAGGAGATAGGT...CTTTGGAAGCCCCTCAACCTTCCCAGAGTGGATGGGAGCAGAGGAAGATTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||
| CDS TCA 90 bp | ATCTTTCATCATAGTCGATGGTATTGGCAAGGCATACCGTACAATTaGTTCTCCGGTGGGTGGAGACCTAATGACCATTGGTTCAATTTT | + |
|
Preference number: 5 (lower is better) Translates to: IFHHSRWYWQGIPYN*FSGGWRPNDHWFNF Trigger: AAAATTGAACCAATGGTCATTAGGTCTCCACCCACCGGAGAATCAATTGTACGGTATGCCTTGCCAATACCATCGACTATGATGAAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026912.8 ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS TCA 90 bp | GTAGCTCTCCGAAGATTATATTCTTCCTTAACTGCTTCCTCCAGCTaGGCAGCAAATTGTGAACAGCACAACAAGAATGAACTCACATCA | + |
|
Preference number: 5 (lower is better) Translates to: VALRRLYSSLTASSS*AANCEQHNKNELTS Trigger: TGATGTGAGTTCATTCTTGTTGTGCTGTTCACAATTTGCTGCTCAGCTGGAGGAAGCAGTTAAGGAAGAATATAATCTTCGGAGAGCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS TCA 72 bp | CATAGTCGATGGTATTGGCAAGGCATACCGTACAATTaGTTCTCCGGTGGGTGGAGACCTAATGACCATTGG | + |
|
Preference number: 6 (lower is better) Translates to: HSRWYWQGIPYN*FSGGWRPNDHW Trigger: CCAATGGTCATTAGGTCTCCACCCACCGGAGAATCAATTGTACGGTATGCCTTGCCAATACCATCGACTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026912.8 ENSMUST00000140887.8 ENSMUST00000148234.8 |
||
| CDS TCA 72 bp | TCTTTACCTATCTCCTCTATTTGGTTGACTTGCTGCTaGAACCACTTGAAAAGAGACTCCAAAATCATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: SLPISSIWLTCC*NHLKRDSKIIF Trigger: GAAGATGATTTTGGAGTCTCTTTTCAAGTGGTTTCAGCAGCAAGTCAACCAAATAGAGGAGATAGGTAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||
| CDS TCA 72 bp | ACTCCAAAATCATCTTCATATTTGTGGCAATCCTCCTaGCCATTTCAGCATCTGATACTAAATCTTTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: TPKSSSYLWQSS*PFQHLILNLSS Trigger: TGATGAAAGATTTAGTATCAGATGCTGAAATGGTCAGGAGGATTGCCACAAATATGAAGATGATTTTGGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026912.8 |
||