Pregenerated sensors for CCDC71L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090946Ensembl transcript IDs: ENSMUST00000172332.4
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAACGCACGTGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGGGTTaGGAAGCAAAGGGACTTCTGTCGCGGGTCCGGCCGTCCCGTCTG | + |
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Preference number: 1 (lower is better) Translates to: KRTCPSRFWRRLHPG*EAKGLLSRVRPSRL Trigger: CAGACGGGACGGCCGGACCCGCGACAGAAGTCCCTTTGCTTCCCAACCCGGATGGAGACGTCTCCAGAACCTGGAGGGACACGTGCGTTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 90 bp | CTAAAAACCCACCAAGTCTTGCCGCCACCAATGACCAAAGGCACTTaGATAATCAAGAACTCCACTCTGGGCCATATGGTATACACGCTA | + |
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Preference number: 1 (lower is better) Translates to: LKTHQVLPPPMTKGT*IIKNSTLGHMVYTL Trigger: TAGCGTGTATACCATATGGCCCAGAGTGGAGTTCTTGATTATCCAAGTGCCTTTGGTCATTGGTGGCGGCAAGACTTGGTGGGTTTTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR TCA 90 bp | AGTGGACAAGTACAAGAAGGGTCAGTACTGTGTGGCTCCATGTTTTaGTTCCTGTGGCCTTCAGCTATCAAAGATTGCAAACACAATGAT | + |
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Preference number: 1 (lower is better) Translates to: SGQVQEGSVLCGSMF*FLWPSAIKDCKHND Trigger: ATCATTGTGTTTGCAATCTTTGATAGCTGAAGGCCACAGGAATCAAAACATGGAGCCACACAGTACTGACCCTTCTTGTACTTGTCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR GCA 90 bp | ATTATTCTCAGAAACTGCCAAGCAGAGATAAACCTTAGTGCTGAGTaGTTAATAAGTTCCAGCCCTGTAGGAATGTCCCATGGCAGAACA | + |
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Preference number: 1 (lower is better) Translates to: IILRNCQAEINLSAE*LISSSPVGMSHGRT Trigger: TGTTCTGCCATGGGACATTCCTACAGGGCTGGAACTTATTAAGCACTCAGCACTAAGGTTTATCTCTGCTTGGCAGTTTCTGAGAATAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR GCA 90 bp | ATCCAAACTTTAGTCAGTTGGAACGATAAGCCAAAGAAGCATTTATaGATACCATCAACTGCACTAAAGTACCAAGGCATGAGAGAAACA | + |
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Preference number: 1 (lower is better) Translates to: IQTLVSWNDKPKKHL*IPSTALKYQGMRET Trigger: TGTTTCTCTCATGCCTTGGTACTTTAGTGCAGTTGATGGTATGCATAAATGCTTCTTTGGCTTATCGTTCCAACTGACTAAAGTTTGGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 90 bp | CTGAATATTATGTTACACCAGGAAGCGAGGTCAAACACCTCCAACTaGATTCCAGTCATTCTTGTAGCCAACATCTTCTTCAAAATTTAT | + |
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Preference number: 1 (lower is better) Translates to: LNIMLHQEARSNTSN*IPVILVANIFFKIY Trigger: ATAAATTTTGAAGAAGATGTTGGCTACAAGAATGACTGGAATCCAGTTGGAGGTGTTTGACCTCGCTTCCTGGTGTAACATAATATTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR TCA 90 bp | AAAGGGTATTCTGTTTATCTGTTTATTCACAATGTCCACACGTATTaGTCTCTCCTAAGCAACTTCCATCTTAATTCTCTTCCCATTAAC | + |
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Preference number: 1 (lower is better) Translates to: KGYSVYLFIHNVHTY*SLLSNFHLNSLPIN Trigger: GTTAATGGGAAGAGAATTAAGATGGAAGTTGCTTAGGAGAGATCAATACGTGTGGACATTGTGAATAAACAGATAAACAGAATACCCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 90 bp | AAAACGCACGTGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGGGTaGGGAAGCAAAGGGACTTCTGTCGCGGGTCCGGCCGTCCCGTCT | + |
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Preference number: 2 (lower is better) Translates to: KTHVSLQVLETSPSG*GSKGTSVAGPAVPS Trigger: AGACGGGACGGCCGGACCCGCGACAGAAGTCCCTTTGCTTCCCAACCCGGATGGAGACGTCTCCAGAACCTGGAGGGACACGTGCGTTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | GTGCATCCCCTCCCAGATGATCTCTCTACTTGTGCCATGAGAGATGACAGAGGGCGTCTCCATCCGGGTTaGGAAGCAAAGGGACTTCTG | + |
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Preference number: 2 (lower is better) Translates to: VHPLPDDLSTCAMRDDRGRLHPG*EAKGLL Trigger: CAGAAGTCCCTTTGCTTCCCAACCCGGATGGAGACG...CCCTCTGTCATCTCTCATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | GTGCATCCCCTCCCAGATGATCTCTCTACTTGTGCCATGAGAGATGACAGAGGGTGGCTGTGGCACCACTaGCTAAAAACCCACCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: VHPLPDDLSTCAMRDDRGWLWHH*LKTHQV Trigger: GACTTGGTGGGTTTTTAGCCAGTGGTGCCACAGCCA...CCCTCTGTCATCTCTCATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR TCA 90 bp | GTGCATCCCCTCCCAGATGATCTCTCTACTTGTGCCATGAGAGATGACAGAGGGTGTGGCTCCATGTTTTaGTTCCTGTGGCCTTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: VHPLPDDLSTCAMRDDRGCGSMF*FLWPSA Trigger: AGCTGAAGGCCACAGGAATCAAAACATGGAGCCACA...CCCTCTGTCATCTCTCATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | GTGCATCCCCTCCCAGATGATCTCTCTACTTGTGCCATGAGAGATGACAGAGGGTCAAGAACTCCACTCTaGGCCATATGGTATACACGC | + |
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Preference number: 2 (lower is better) Translates to: VHPLPDDLSTCAMRDDRGSRTPL*AIWYTR Trigger: GCGTGTATACCATATGGCCCAGAGTGGAGTTCTTGA...CCCTCTGTCATCTCTCATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 90 bp | AGAAAAAGCTGGCTGTGGCACCACTGGCTAAAAACCCACCAAGTCTaGCCGCCACCAATGACCAAAGGCACTTGGATAATCAAGAACTCC | + |
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Preference number: 2 (lower is better) Translates to: RKSWLWHHWLKTHQV*PPPMTKGTWIIKNS Trigger: GGAGTTCTTGATTATCCAAGTGCCTTTGGTCATTGGTGGCGGCAAGACTTGGTGGGTTTTTAGCCAGTGGTGCCACAGCCAGCTTTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 90 bp | GCTAAAAACCCACCAAGTCTTGCCGCCACCAATGACCAAAGGCACTaGGATAATCAAGAACTCCACTCTGGGCCATATGGTATACACGCT | + |
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Preference number: 2 (lower is better) Translates to: AKNPPSLAATNDQRH*DNQELHSGPYGIHA Trigger: AGCGTGTATACCATATGGCCCAGAGTGGAGTTCTTGATTATCCAAGTGCCTTTGGTCATTGGTGGCGGCAAGACTTGGTGGGTTTTTAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | ATAGGCACCACAACAGCAACACTGTACTATCAACACGGAAGCTTGCCCTCAGCTGTTACCTGTCCATTGTaGCCCCGAGGTAAATTTTAC | + |
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Preference number: 2 (lower is better) Translates to: IGTTTATLYYQHGSLPSAVTCPL*PRGKFY Trigger: GTAAAATTTACCTCGGGGCCACAATGGACAGGTAAC...AGCTGAGGGCAAGCTTCCGTGTTGATAGTACAGTGTTGCTGTTGTGGTGCCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR TCA 90 bp | TGTACACATGGCAAATCAATAGGTATGAGCTACCAGCTTAAGTTACACTTGTCCGCATCCCCTCCCAGATaGTCTCTCTACTTGTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: CTHGKSIGMSYQLKLHLSASPPR*SLYLCH Trigger: ATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGC...GGACAAGTGTAACTTAAGCTGGTAGCTCATACCTATTGATTTGCCATGTGTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR GCA 90 bp | GTGCATCCCCTCCCAGATGATCTCTCTACTTGTGCCATGAGAGATGACAGAGGGATTATTCTCAGAAACTaGCAAGCAGAGATAAACCTT | + |
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Preference number: 2 (lower is better) Translates to: VHPLPDDLSTCAMRDDRGIILRN*QAEINL Trigger: AAGGTTTATCTCTGCTTGGCAGTTTCTGAGAATAAT...CCCTCTGTCATCTCTCATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | ATAGGCACCACAACAGCAACACTGTACTATCAACACGGAAGCTTGCCCTCAGCTAAATTAGAAAACGAGTaGCCTTCAGAATACCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: IGTTTATLYYQHGSLPSAKLENE*PSEYPE Trigger: CTCAGGGTATTCTGAAGGCCACTCGTTTTCTAATTT...AGCTGAGGGCAAGCTTCCGTGTTGATAGTACAGTGTTGCTGTTGTGGTGCCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | ATAGGCACCACAACAGCAACACTGTACTATCAACACGGAAGCTTGCCCTCAGCTATGACCAAAGGCACTTaGATAATCAAGAACTCCACT | + |
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Preference number: 2 (lower is better) Translates to: IGTTTATLYYQHGSLPSAMTKGT*IIKNST Trigger: AGTGGAGTTCTTGATTATCCAAGTGCCTTTGGTCAT...AGCTGAGGGCAAGCTTCCGTGTTGATAGTACAGTGTTGCTGTTGTGGTGCCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CCA 90 bp | CCTGAATATTATGTTACACCAGGAAGCGAGGTCAAACACCTCCAACTGGATTCCGAGCAAGTAAAATTCTaGCTGTATTACACAAGCACG | + |
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Preference number: 2 (lower is better) Translates to: PEYYVTPGSEVKHLQLDSEQVKF*LYYTST Trigger: CGTGCTTGTGTAATACAGCCAGAATTTTACTTGCTC...GGAATCCAGTTGGAGGTGTTTGACCTCGCTTCCTGGTGTAACATAATATTCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 72 bp | TGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGGGTTaGGAAGCAAAGGGACTTCTGTCGCGGGTCCGGCCG | + |
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Preference number: 3 (lower is better) Translates to: CPSRFWRRLHPG*EAKGLLSRVRP Trigger: CGGCCGGACCCGCGACAGAAGTCCCTTTGCTTCCCAACCCGGATGGAGACGTCTCCAGAACCTGGAGGGACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CAA 90 bp | GTGGACAAGTACAAGAAGGGTCAGTACTGTGTGGCTCCATGTTTTGATTCCTGTACGTCTCCATCCGGGTaGGGAAGCAAAGGGACTTCT | + |
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Preference number: 3 (lower is better) Translates to: VDKYKKGQYCVAPCFDSCTSPSG*GSKGTS Trigger: AGAAGTCCCTTTGCTTCCCAACCCGGATGGAGACGT...ACAGGAATCAAAACATGGAGCCACACAGTACTGACCCTTCTTGTACTTGTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 72 bp | CACCAAGTCTTGCCGCCACCAATGACCAAAGGCACTTaGATAATCAAGAACTCCACTCTGGGCCATATGGTA | + |
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Preference number: 3 (lower is better) Translates to: HQVLPPPMTKGT*IIKNSTLGHMV Trigger: TACCATATGGCCCAGAGTGGAGTTCTTGATTATCCAAGTGCCTTTGGTCATTGGTGGCGGCAAGACTTGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CAA 90 bp | ATAGGCACCACAACAGCAACACTGTACTATCAACACGGAAGCTTGCCCTCAGCTGCTGCAACATGGGTTTaGCTGCAGAAAAACTTGGCA | + |
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Preference number: 3 (lower is better) Translates to: IGTTTATLYYQHGSLPSAAATWV*LQKNLA Trigger: TGCCAAGTTTTTCTGCAGCAAAACCCATGTTGCAGC...AGCTGAGGGCAAGCTTCCGTGTTGATAGTACAGTGTTGCTGTTGTGGTGCCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 72 bp | AACACGGAAGCTTGCCCTCAGCTATCGCCAGGTCATTaGCTTAGCAAAGTAAAAGTAAGTTGCTGGGTGACA | + |
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Preference number: 3 (lower is better) Translates to: NTEACPQLSPGH*LSKVKVSCWVT Trigger: TGTCACCCAGCAACTTACTTTTACTTTGCTAAGCCAATGACCTGGCGATAGCTGAGGGCAAGCTTCCGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CAA 90 bp | GTGCATCCCCTCCCAGATGATCTCTCTACTTGTGCCATGAGAGATGACAGAGGGATAAAGGTTATATTTTaGAGCCGTATCAAACTCCGC | + |
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Preference number: 3 (lower is better) Translates to: VHPLPDDLSTCAMRDDRGIKVIF*SRIKLR Trigger: GCGGAGTTTGATACGGCTCAAAAATATAACCTTTAT...CCCTCTGTCATCTCTCATGGCACAAGTAGAGAGATCATCTGGGAGGGGATGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CAA 90 bp | ATAGGCACCACAACAGCAACACTGTACTATCAACACGGAAGCTTGCCCTCAGCTGTCTCTGAAATACATTaGGCAATGGAAGCTAATAAC | + |
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Preference number: 3 (lower is better) Translates to: IGTTTATLYYQHGSLPSAVSEIH*AMEANN Trigger: GTTATTAGCTTCCATTGCCAAATGTATTTCAGAGAC...AGCTGAGGGCAAGCTTCCGTGTTGATAGTACAGTGTTGCTGTTGTGGTGCCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR TCA 72 bp | GTAAAAATTAGAAAACGAGTGGCCTTCAGAATACCCTaGGCGTACACCAGCACTTCACCAGGAAACATAGTC | + |
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Preference number: 3 (lower is better) Translates to: VKIRKRVAFRIP*AYTSTSPGNIV Trigger: GACTATGTTTCCTGGTGAAGTGCTGGTGTACGCTCAGGGTATTCTGAAGGCCACTCGTTTTCTAATTTTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR GCA 72 bp | AGAAACTGCCAAGCAGAGATAAACCTTAGTGCTGAGTaGTTAATAAGTTCCAGCCCTGTAGGAATGTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: RNCQAEINLSAE*LISSSPVGMSH Trigger: ATGGGACATTCCTACAGGGCTGGAACTTATTAAGCACTCAGCACTAAGGTTTATCTCTGCTTGGCAGTTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 72 bp | CTCCGCATTGGAAACCAAATCCAAACTTTAGTCAGTTaGAACGATAAGCCAAAGAAGCATTTATGCATACCA | + |
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Preference number: 3 (lower is better) Translates to: LRIGNQIQTLVS*NDKPKKHLCIP Trigger: TGGTATGCATAAATGCTTCTTTGGCTTATCGTTCCAACTGACTAAAGTTTGGATTTGGTTTCCAATGCGGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR-3UTR CAA 90 bp | TGGTATACACGCTATTATAAAAGTGGACAAGTACAAGAAGGGTCAGTACTGTGTTGTACTTTGCATCTCTaGTTAATCACTGAGCTCATG | + |
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Preference number: 3 (lower is better) Translates to: WYTRYYKSGQVQEGSVLCCTLHL*LITELM Trigger: CATGAGCTCAGTGATTAACAAGAGATGCAAAGTACA...ACACAGTACTGACCCTTCTTGTACTTGTCCACTTTTATAATAGCGTGTATACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CCA 72 bp | AAAGGTTATATTTTTGAGCCGTATCAAACTCCGCATTaGAAACCAAATCCAAACTTTAGTCAGTTGGAACGA | + |
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Preference number: 3 (lower is better) Translates to: KGYIFEPYQTPH*KPNPNFSQLER Trigger: TCGTTCCAACTGACTAAAGTTTGGATTTGGTTTCCAATGCGGAGTTTGATACGGCTCAAAAATATAACCTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | GACATTGACATAAGTCCGTTCCAGCGCGCGGAAGCTTCCCCGGGCGGCGGCCGGAGATCTCCTCCAGGGTaGGGCCCCCGAAGCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: DIDISPFQRAEASPGGGRRSPPG*GPRSWM Trigger: CATCCAGCTTCGGGGGCCGCACCCTGGAGGAGATCT...CCGGCCGCCGCCCGGGGAAGCTTCCGCGCGCTGGAACGGACTTATGTCAATGTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | GACATTGACATAAGTCCGTTCCAGCGCGCGGAAGCTTCCCCGGGCGGCGGCCGGCGTAGACGTCCTTGCTaGGCAGGATGTGCGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: DIDISPFQRAEASPGGGRRRRPC*AGCAGR Trigger: TCTCCCCGCACATCCTGCGCAGCAAGGACGTCTACG...CCGGCCGCCGCCCGGGGAAGCTTCCGCGCGCTGGAACGGACTTATGTCAATGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 72 bp | GTGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGGGTaGGGAAGCAAAGGGACTTCTGTCGCGGGTCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: VSLQVLETSPSG*GSKGTSVAGPA Trigger: GGCCGGACCCGCGACAGAAGTCCCTTTGCTTCCCAACCCGGATGGAGACGTCTCCAGAACCTGGAGGGACAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | CCGAGAGGGAGAAAACGCACGTGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGTGCGGGGAGAACTGGTaGTTGAGGCTGCAGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: PRGRKRTCPSRFWRRLHPCGENW*LRLQRK Trigger: CTTCCTCTGCAGCCTCAAGCACCAGTTCTCCCCGCA...CGGATGGAGACGTCTCCAGAACCTGGAGGGACACGTGCGTTTTCTCCCTCTCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CCA 90 bp | CCGAGAGGGAGAAAACGCACGTGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGATGTGCGGGGAGAACTaGTGCTTGAGGCTGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: PRGRKRTCPSRFWRRLHPMCGEN*CLRLQR Trigger: CCTCTGCAGCCTCAAGCACCAGTTCTCCCCGCACAT...CGGATGGAGACGTCTCCAGAACCTGGAGGGACACGTGCGTTTTCTCCCTCTCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CCA 90 bp | CCAGGAAGCGAGGTCAAACACCTCCAACTGGATTCCAGTCATTCTTGTAGCCAACGTCGCCGACGCGGATaGTCGGGAAGCTGGTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: PGSEVKHLQLDSSHSCSQRRRRG*SGSWSA Trigger: CGCTGACCAGCTTCCCGACCATCCGCGTCGGCGACG...TTGGCTACAAGAATGACTGGAATCCAGTTGGAGGTGTTTGACCTCGCTTCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | GTGGACAAGTACAAGAAGGGTCAGTACTGTGTGGCTCCATGTTTTGATTCCTGTGGGGTCGGGCACCAGTaGCCGGCACGAGGAGTAGCC | + |
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Preference number: 4 (lower is better) Translates to: VDKYKKGQYCVAPCFDSCGVGHQ*PARGVA Trigger: GGCTACTCCTCGTGCCGGGCACTGGTGCCCGACCCC...ACAGGAATCAAAACATGGAGCCACACAGTACTGACCCTTCTTGTACTTGTCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR TCA 90 bp | CCAGGAAGCGAGGTCAAACACCTCCAACTGGATTCCAGTCATTCTTGTAGCCAACCGCTTCCGAGCTCATaGACTCCGTGCTGCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: PGSEVKHLQLDSSHSCSQPLPSS*TPCCWA Trigger: TGCCCAGCAGCACGGAGTTCATGAGCTCGGAAGCGG...TTGGCTACAAGAATGACTGGAATCCAGTTGGAGGTGTTTGACCTCGCTTCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | ATAGGCACCACAACAGCAACACTGTACTATCAACACGGAAGCTTGCCCTCAGCTTTGCTGCGCAGGATGTaGGGGGAGAACTGGTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: IGTTTATLYYQHGSLPSALLRRM*GENWCL Trigger: CAAGCACCAGTTCTCCCCGCACATCCTGCGCAGCAA...AGCTGAGGGCAAGCTTCCGTGTTGATAGTACAGTGTTGCTGTTGTGGTGCCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 72 bp | TGGCTGTGGCACCACTGGCTAAAAACCCACCAAGTCTaGCCGCCACCAATGACCAAAGGCACTTGGATAATC | + |
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Preference number: 4 (lower is better) Translates to: WLWHHWLKTHQV*PPPMTKGTWII Trigger: GATTATCCAAGTGCCTTTGGTCATTGGTGGCGGCAAGACTTGGTGGGTTTTTAGCCAGTGGTGCCACAGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CCA 90 bp | TGTACACATGGCAAATCAATAGGTATGAGCTACCAGCTTAAGTTACACTTGTCCGGATGGTCGGGAAGCTaGTCAGCGTCGGGGTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: CTHGKSIGMSYQLKLHLSGWSGS*SASGWP Trigger: CGGCCACCCCGACGCTGACCAGCTTCCCGACCATCC...GGACAAGTGTAACTTAAGCTGGTAGCTCATACCTATTGATTTGCCATGTGTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | TATACACGCTATTATAAAAGTGGACAAGTACAAGAAGGGTCAGTACTGTGTGGCCCGGCCAGCGACAGTTaGGACCGCGAGTACACCACC | + |
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Preference number: 4 (lower is better) Translates to: YTRYYKSGQVQEGSVLCGPASDS*DREYTT Trigger: GGTGGTGTACTCGCGGTCGCAACTGTCGCTGGCCGG...GCCACACAGTACTGACCCTTCTTGTACTTGTCCACTTTTATAATAGCGTGTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CCA 90 bp | TATACACGCTATTATAAAAGTGGACAAGTACAAGAAGGGTCAGTACTGTGTGGCTGGTCAGCGTCGGGGTaGCCGCCCTCCAGATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: YTRYYKSGQVQEGSVLCGWSASG*PPSRSP Trigger: AGGAGATCTGGAGGGCGGCCACCCCGACGCTGACCA...GCCACACAGTACTGACCCTTCTTGTACTTGTCCACTTTTATAATAGCGTGTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 72 bp | CCACCAAGTCTTGCCGCCACCAATGACCAAAGGCACTaGGATAATCAAGAACTCCACTCTGGGCCATATGGT | + |
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Preference number: 4 (lower is better) Translates to: PPSLAATNDQRH*DNQELHSGPYG Trigger: ACCATATGGCCCAGAGTGGAGTTCTTGATTATCCAAGTGCCTTTGGTCATTGGTGGCGGCAAGACTTGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR GCA 90 bp | TGTACACATGGCAAATCAATAGGTATGAGCTACCAGCTTAAGTTACACTTGTCCAGCCGTAGACGTCCTTaGTGCGCAGGATGTGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: CTHGKSIGMSYQLKLHLSSRRRP*CAGCAG Trigger: CCCCGCACATCCTGCGCAGCAAGGACGTCTACGGCT...GGACAAGTGTAACTTAAGCTGGTAGCTCATACCTATTGATTTGCCATGTGTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| 3UTR CAA 72 bp | AGTACAAGAAGGGTCAGTACTGTGTGGCTCCATGTTTaGATTCCTGTGGCCTTCAGCTATCAAAGATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: STRRVSTVWLHV*IPVAFSYQRLQ Trigger: TTGCAATCTTTGATAGCTGAAGGCCACAGGAATCAAAACATGGAGCCACACAGTACTGACCCTTCTTGTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS GCA 90 bp | AGCTGGTCAGCGTCGGGGTGGCCGCCCTCCAGATCTCCTCCAGGGTaGGGCCCCCGAAGCTGGATGCGGGAGGCCCGGGCTCCGCGGCCG | + |
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Preference number: 5 (lower is better) Translates to: SWSASGWPPSRSPPG*GPRSWMREARAPRP Trigger: CGGCCGCGGAGCCCGGGCCTCCCGCATCCAGCTTCGGGGGCCGCACCCTGGAGGAGATCTGGAGGGCGGCCACCCCGACGCTGACCAGCT 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS GCA 90 bp | CCACTCGCAGCACTTGGCTCGCCCTGCGCCGCGCCACCGCCAGGCTaGGCTCGCCCCACACGTCGTCGCCGACGCGGATGGTCGGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: PLAALGSPCAAPPPG*ARPTRRRRRGWSGS Trigger: GCTTCCCGACCATCCGCGTCGGCGACGACGTGTGGGGCGAGCGCAGCCTGGCGGTGGCGCGGCGCAGGGCGAGCCAAGTGCTGCGAGTGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS GCA 90 bp | GCCTCACCACCGGGTCCAGGTCCACTCGCAGCACTTGGCTCGCCCTaGGCCGCGCCACCGCCAGGCTGCGCTCGCCCCACACGTCGTCGC | + |
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Preference number: 5 (lower is better) Translates to: ASPPGPGPLAALGSP*AAPPPGCARPTRRR Trigger: GCGACGACGTGTGGGGCGAGCGCAGCCTGGCGGTGGCGCGGCGCAGGGCGAGCCAAGTGCTGCGAGTGGACCTGGACCCGGTGGTGAGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CCA 90 bp | CCACCGCCAGGCTGCGCTCGCCCCACACGTCGTCGCCGACGCGGATaGTCGGGAAGCTGGTCAGCGTCGGGGTGGCCGCCCTCCAGATCT | + |
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Preference number: 5 (lower is better) Translates to: PPPGCARPTRRRRRG*SGSWSASGWPPSRS Trigger: AGATCTGGAGGGCGGCCACCCCGACGCTGACCAGCTTCCCGACCATCCGCGTCGGCGACGACGTGTGGGGCGAGCGCAGCCTGGCGGTGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CCA 90 bp | TGCGCTCGCCCCACACGTCGTCGCCGACGCGGATGGTCGGGAAGCTaGTCAGCGTCGGGGTGGCCGCCCTCCAGATCTCCTCCAGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: CARPTRRRRRGWSGS*SASGWPPSRSPPGC Trigger: GCACCCTGGAGGAGATCTGGAGGGCGGCCACCCCGACGCTGACCAGCTTCCCGACCATCCGCGTCGGCGACGACGTGTGGGGCGAGCGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS GCA 90 bp | TTGAAGGCGTCGCCCAGCGCCTCCGTGCTTCCGGCCAGCGACAGTTaGGACCGCGAGTACACCACCTTCTCCTCCAGCGCCTCCAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: LKASPSASVLPASDS*DREYTTFSSSASSP Trigger: CGGGCTGGAGGCGCTGGAGGAGAAGGTGGTGTACTCGCGGTCGCAACTGTCGCTGGCCGGAAGCACGGAGGCGCTGGGCGACGCCTTCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CAA 90 bp | GACATTGACATAAGTCCGTTCCAGCGCGCGGAAGCTTCCCCGGGCGGCGGCCGGCTGGGCATGAAGAGCTaGAAGGCGTCGCCCAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: DIDISPFQRAEASPGGGRLGMKS*KASPSA Trigger: GGCGCTGGGCGACGCCTTCAAGCTCTTCATGCCCAG...CCGGCCGCCGCCCGGGGAAGCTTCCGCGCGCTGGAACGGACTTATGTCAATGTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CAA 90 bp | CCGAGAGGGAGAAAACGCACGTGTCCCTCCAGGTTCTGGAGACGTCTCCATCCGGGGGAGAACTGGTGCTaGAGGCTGCAGAGGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: PRGRKRTCPSRFWRRLHPGENWC*RLQRKL Trigger: GAGCTTCCTCTGCAGCCTCAAGCACCAGTTCTCCCC...CGGATGGAGACGTCTCCAGAACCTGGAGGGACACGTGCGTTTTCTCCCTCTCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS-3UTR CAA 90 bp | AGAAATGCCCCTGCCCCTCCCTATAGATCATTCACAATTCTGGGAATTCTAAAGTCCGGCCAGCGACAGTaGCGACCGCGAGTACACCAC | + |
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Preference number: 5 (lower is better) Translates to: RNAPAPPYRSFTILGILKSGQRQ*RPRVHH Trigger: GTGGTGTACTCGCGGTCGCAACTGTCGCTGGCCGGA...CTTTAGAATTCCCAGAATTGTGAATGATCTATAGGGAGGGGCAGGGGCATTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS GCA 72 bp | GCGTCGGGGTGGCCGCCCTCCAGATCTCCTCCAGGGTaGGGCCCCCGAAGCTGGATGCGGGAGGCCCGGGCT | + |
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Preference number: 6 (lower is better) Translates to: ASGWPPSRSPPG*GPRSWMREARA Trigger: AGCCCGGGCCTCCCGCATCCAGCTTCGGGGGCCGCACCCTGGAGGAGATCTGGAGGGCGGCCACCCCGACGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CCA 72 bp | GGCTGCGCTCGCCCCACACGTCGTCGCCGACGCGGATaGTCGGGAAGCTGGTCAGCGTCGGGGTGGCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: GCARPTRRRRRG*SGSWSASGWPP Trigger: GGGCGGCCACCCCGACGCTGACCAGCTTCCCGACCATCCGCGTCGGCGACGACGTGTGGGGCGAGCGCAGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CCA 72 bp | CGACGCGGATGGTCGGGAAGCTGGTCAGCGTCGGGGTaGCCGCCCTCCAGATCTCCTCCAGGGTGCGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: RRGWSGSWSASG*PPSRSPPGCGP Trigger: GGGGCCGCACCCTGGAGGAGATCTGGAGGGCGGCCACCCCGACGCTGACCAGCTTCCCGACCATCCGCGTCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CCA 72 bp | CCCACACGTCGTCGCCGACGCGGATGGTCGGGAAGCTaGTCAGCGTCGGGGTGGCCGCCCTCCAGATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PTRRRRRGWSGS*SASGWPPSRSP Trigger: AGGAGATCTGGAGGGCGGCCACCCCGACGCTGACCAGCTTCCCGACCATCCGCGTCGGCGACGACGTGTGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CAA 90 bp | CTTGAAGGCGTCGCCCAGCGCCTCCGTGCTTCCGGCCAGCGACAGTaGCGACCGCGAGTACACCACCTTCTCCTCCAGCGCCTCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LEGVAQRLRASGQRQ*RPRVHHLLLQRLQP Trigger: GGGCTGGAGGCGCTGGAGGAGAAGGTGGTGTACTCGCGGTCGCAACTGTCGCTGGCCGGAAGCACGGAGGCGCTGGGCGACGCCTTCAAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS GCA 72 bp | TCGCCCAGCGCCTCCGTGCTTCCGGCCAGCGACAGTTaGGACCGCGAGTACACCACCTTCTCCTCCAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: SPSASVLPASDS*DREYTTFSSSA Trigger: GGCGCTGGAGGAGAAGGTGGTGTACTCGCGGTCGCAACTGTCGCTGGCCGGAAGCACGGAGGCGCTGGGCGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CAA 72 bp | GTCGCCCAGCGCCTCCGTGCTTCCGGCCAGCGACAGTaGCGACCGCGAGTACACCACCTTCTCCTCCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: VAQRLRASGQRQ*RPRVHHLLLQR Trigger: GCGCTGGAGGAGAAGGTGGTGTACTCGCGGTCGCAACTGTCGCTGGCCGGAAGCACGGAGGCGCTGGGCGAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CAA 72 bp | GAGCTCATGAACTCCGTGCTGCTGGGCATGAAGAGCTaGAAGGCGTCGCCCAGCGCCTCCGTGCTTCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: ELMNSVLLGMKS*KASPSASVLPA Trigger: GGCCGGAAGCACGGAGGCGCTGGGCGACGCCTTCAAGCTCTTCATGCCCAGCAGCACGGAGTTCATGAGCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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| CDS CAA 90 bp | TCCGCTTCCGAGCTCATGAACTCCGTGCTGCTGGGCATGAAGAGCTaGAAGGCGTCGCCCAGCGCCTCCGTGCTTCCGGCCAGCGACAGT | + |
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Preference number: 6 (lower is better) Translates to: SASELMNSVLLGMKS*KASPSASVLPASDS Trigger: ACTGTCGCTGGCCGGAAGCACGGAGGCGCTGGGCGACGCCTTCAAGCTCTTCATGCCCAGCAGCACGGAGTTCATGAGCTCGGAAGCGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172332.4 |
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