Pregenerated sensors for CCDC70 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017049

Ensembl transcript IDs: ENSMUST00000017193.2, ENSMUST00000070649.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	CCGACCTTCCTCGAAGAGCTGCTTTGTCAAACCTCTCTTCAGGACTTTATTATCTTTCAGTCCAACCAGTaGTGTCTGCACCCCATCACC	+
Preference number: 2 (lower is better) Translates to: PTFLEELLCQTSLQDFIIFQSNQ*CLHPIT Trigger: GGTGATGGGGTGCAGACATCACTGGTTGGACTGAAA...GATAATAAAGTCCTGAAGAGAGGTTTGACAAAGCAGCTCTTCGAGGAAGGTCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017193.2
3UTR TCA 72 bp	AGATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTaGTGTCTGCACCCCATCACCCTCTGTGTTCAGTTG	+
Preference number: 3 (lower is better) Translates to: RLWGHPGFQSNQ*CLHPITLCVQL Trigger: CAACTGAACACAGAGGGTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR TCA 90 bp	TCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACCCTCTGTGTCGAGGGCAGCACCAGTaGCCGGAGGCAGGCCAGTCC	+
Preference number: 4 (lower is better) Translates to: SPWISVQPVMSAPHHPLCRGQHQ*PEAGQS Trigger: GGACTGGCCTGCCTCCGGTCACTGGTGCTGCCCTCG...ACACAGAGGGTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR TCA 90 bp	TGTCTATTTCTTCTAGATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATCGAGGGCAGCACCAGTaGCCGGAGGCAGGCCAGTCC	+
Preference number: 4 (lower is better) Translates to: CLFLLDYGVTLDFSPTSDRGQHQ*PEAGQS Trigger: GGACTGGCCTGCCTCCGGTCACTGGTGCTGCCCTCG...ATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAATCTAGAAGAAATAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR GCA 90 bp	ATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACCCTATCCTCTCTCCAGAATaGCTTGTCCTCCTTCCAGAA	+
Preference number: 4 (lower is better) Translates to: MGSPWISVQPVMSAPHHPILSPE*LVLLPE Trigger: TTCTGGAAGGAGGACAAGGCATTCTGGAGAGAGGAT...AGGGTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR TCA 90 bp	CCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACCCTCTGTGTTCATGTATTAATTTCTTCTaGCGGATACTGGGCGAGGGC	+
Preference number: 4 (lower is better) Translates to: PWISVQPVMSAPHHPLCSCINFF*RILGEG Trigger: GCCCTCGCCCAGTATCCGTCAGAAGAAATTAATACA...TGAACACAGAGGGTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR TCA 90 bp	ATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACTGTATTAATTTCTTCTaGCGGATACTGGGCGAGGGC	+
Preference number: 4 (lower is better) Translates to: IMGSPWISVQPVMSAPHHCINFF*RILGEG Trigger: GCCCTCGCCCAGTATCCGTCAGAAGAAATTAATACA...GTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CCA 90 bp	ATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACACTGTGGCTCTTCATTaGCATTGTAGGGACCATTTT	+
Preference number: 4 (lower is better) Translates to: IMGSPWISVQPVMSAPHHTVALH*HCRDHF Trigger: AAAATGGTCCCTACAATGCCAATGAAGAGCCACAGT...GTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR GCA 90 bp	TCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACCCTCTGTGTAAAGCCTTTTCCTCCTaGAGCTTGTGTATTAATTTC	+
Preference number: 4 (lower is better) Translates to: SPWISVQPVMSAPHHPLCKAFSS*SLCINF Trigger: GAAATTAATACACAAGCTGCAGGAGGAAAAGGCTTT...ACACAGAGGGTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR GCA 90 bp	GATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCAAAAGCCTTTTCCTCCTaGAGCTTGTGTATTAATTTC	+
Preference number: 4 (lower is better) Translates to: DYGVTLDFSPTSDVCTPSKAFSS*SLCINF Trigger: GAAATTAATACACAAGCTGCAGGAGGAAAAGGCTTT...TGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CCA 90 bp	TCATGGCAAAGAGACAAATTAGTGTCTATTTCTTCTAGATTATGGGGTCACCCTCAAAAACCCAGGATCTaGCCCCGGAAAGCCCTGATC	+
Preference number: 4 (lower is better) Translates to: SWQRDKLVSISSRLWGHPQKPRI*PRKALI Trigger: GATCAGGGCTTTCCGGGGCCAGATCCTGGGTTTTTG...AGGGTGACCCCATAATCTAGAAGAAATAGACACTAATTTGTCTCTTTGCCATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CCA 90 bp	AGAGACAAATTAGTGTCTATTTCTTCTAGATTATGGGGTCACCCTGGATTTCAGTGTTCCCCAAGGAGATaGAAACCACCACCTTCCACC	+
Preference number: 4 (lower is better) Translates to: RDKLVSISSRLWGHPGFQCSPRR*KPPPST Trigger: GGTGGAAGGTGGTGGTTTCCATCTCCTTGGGGAACA...CTGAAATCCAGGGTGACCCCATAATCTAGAAGAAATAGACACTAATTTGTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CCA 90 bp	AAATTAGTGTCTATTTCTTCTAGATTATGGGGTCACCCTGGATTTCAGTCCAACTGTTCCCCAAGGAGATaGAAACCACCACCTTCCACC	+
Preference number: 4 (lower is better) Translates to: KLVSISSRLWGHPGFQSNCSPRR*KPPPST Trigger: GGTGGAAGGTGGTGGTTTCCATCTCCTTGGGGAACA...GTTGGACTGAAATCCAGGGTGACCCCATAATCTAGAAGAAATAGACACTAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR TCA 90 bp	TGTCTATTTCTTCTAGATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATCCCAGATCTCTTCCCTaGAGTCTTCGATTTTCTCAT	+
Preference number: 4 (lower is better) Translates to: CLFLLDYGVTLDFSPTSDPRSLP*SLRFSH Trigger: ATGAGAAAATCGAAGACTTCAGGGAAGAGATCTGGG...ATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAATCTAGAAGAAATAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CCA 90 bp	TCTCTTTCATGGCAAAGAGACAAATTAGTGTCTATTTCTTCTAGATTATGGGGTCAAAAACCCAGGATCTaGCCCCGGAAAGCCCTGATC	+
Preference number: 4 (lower is better) Translates to: SLSWQRDKLVSISSRLWGQKPRI*PRKALI Trigger: GATCAGGGCTTTCCGGGGCCAGATCCTGGGTTTTTG...ACCCCATAATCTAGAAGAAATAGACACTAATTTGTCTCTTTGCCATGAAAGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR GCA 90 bp	AGAGACAAATTAGTGTCTATTTCTTCTAGATTATGGGGTCACCCTGGATTTCAGATCCTCTCTCCAGAATaGCTTGTCCTCCTTCCAGAA	+
Preference number: 4 (lower is better) Translates to: RDKLVSISSRLWGHPGFQILSPE*LVLLPE Trigger: TTCTGGAAGGAGGACAAGGCATTCTGGAGAGAGGAT...CTGAAATCCAGGGTGACCCCATAATCTAGAAGAAATAGACACTAATTTGTCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS CCA 90 bp	CCTTTTCCTCCTGCAGCTTGTGTATTAATTTCTTCTGACGGATACTaGGCGAGGGCAGCACCAGTGACCGGAGGCAGGCCAGTCCCATCC	+
Preference number: 5 (lower is better) Translates to: PFPPAACVLISSDGY*ARAAPVTGGRPVPS Trigger: GGATGGGACTGGCCTGCCTCCGGTCACTGGTGCTGCCCTCGCCCAGTATCCGTCAGAAGAAATTAATACACAAGCTGCAGGAGGAAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CAA 90 bp	TCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACCCTCTGTGTCCCGGGGGAAGGATGTaGACTGTGGCTCTTCATTGG	+
Preference number: 5 (lower is better) Translates to: SPWISVQPVMSAPHHPLCPGGRM*TVALHW Trigger: CCAATGAAGAGCCACAGTCAACATCCTTCCCCCGGG...ACACAGAGGGTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS TCA 90 bp	TCTCGAAAAGCCTTTTCCTCCTGCAGCTTGTGTATTAATTTCTTCTaGCGGATACTGGGCGAGGGCAGCACCAGTGACCGGAGGCAGGCC	+
Preference number: 5 (lower is better) Translates to: SRKAFSSCSLCINFF*RILGEGSTSDRRQA Trigger: GGCCTGCCTCCGGTCACTGGTGCTGCCCTCGCCCAGTATCCGTCAGAAGAAATTAATACACAAGCTGCAGGAGGAAAAGGCTTTTCGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CAA 90 bp	ATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCACCCCGGGGGAAGGATGTaGACTGTGGCTCTTCATTGG	+
Preference number: 5 (lower is better) Translates to: IMGSPWISVQPVMSAPHHPGGRM*TVALHW Trigger: CCAATGAAGAGCCACAGTCAACATCCTTCCCCCGGG...GTGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CAA 90 bp	GATTATGGGGTCACCCTGGATTTCAGTCCAACCAGTGATGTCTGCACCCCATCAGCCAGTCCCATCCACTaGCTCACCTTGAAGGGAAAC	+
Preference number: 5 (lower is better) Translates to: DYGVTLDFSPTSDVCTPSASPIH*LTLKGN Trigger: GTTTCCCTTCAAGGTGAGCAAGTGGATGGGACTGGC...TGATGGGGTGCAGACATCACTGGTTGGACTGAAATCCAGGGTGACCCCATAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS GCA 90 bp	TTCCTCCCAGAGGGACTTCTTATCTTCCCACAAAGCCTTTTCTTCTaGAAGCAGGGCTCTTTCCTCTACCCACAAGGCCTTTTCCTCCTC	+
Preference number: 5 (lower is better) Translates to: FLPEGLLIFPQSLFF*KQGSFLYPQGLFLL Trigger: GAGGAGGAAAAGGCCTTGTGGGTAGAGGAAAGAGCCCTGCTTGCAGAAGAAAAGGCTTTGTGGGAAGATAAGAAGTCCCTCTGGGAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CAA 90 bp	AGAGACAAATTAGTGTCTATTTCTTCTAGATTATGGGGTCACCCTGGATTTCAGGCCAGTCCCATCCACTaGCTCACCTTGAAGGGAAAC	+
Preference number: 5 (lower is better) Translates to: RDKLVSISSRLWGHPGFQASPIH*LTLKGN Trigger: GTTTCCCTTCAAGGTGAGCAAGTGGATGGGACTGGC...CTGAAATCCAGGGTGACCCCATAATCTAGAAGAAATAGACACTAATTTGTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS-3UTR CAA 90 bp	CTTTCATGGCAAAGAGACAAATTAGTGTCTATTTCTTCTAGATTATGGGGTCACATTGTAGGGACCATTTaGGTGCCTCTGTTCCCCAAG	+
Preference number: 5 (lower is better) Translates to: LSWQRDKLVSISSRLWGHIVGTI*VPLFPK Trigger: CTTGGGGAACAGAGGCACCAAAATGGTCCCTACAAT...GTGACCCCATAATCTAGAAGAAATAGACACTAATTTGTCTCTTTGCCATGAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS CCA 72 bp	CCTGCAGCTTGTGTATTAATTTCTTCTGACGGATACTaGGCGAGGGCAGCACCAGTGACCGGAGGCAGGCCA	+
Preference number: 6 (lower is better) Translates to: PAACVLISSDGY*ARAAPVTGGRP Trigger: TGGCCTGCCTCCGGTCACTGGTGCTGCCCTCGCCCAGTATCCGTCAGAAGAAATTAATACACAAGCTGCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS CAA 72 bp	CAAAAACCCAGGATCTGGCCCCGGAAAGCCCTGATCTaGCCTCGGAACTCCCAGATCTCTTCCCTGAAGTCT	+
Preference number: 6 (lower is better) Translates to: QKPRIWPRKALI*PRNSQISSLKS Trigger: AGACTTCAGGGAAGAGATCTGGGAGTTCCGAGGCAAGATCAGGGCTTTCCGGGGCCAGATCCTGGGTTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2
CDS TCA 72 bp	GCCTTTTCCTCCTGCAGCTTGTGTATTAATTTCTTCTaGCGGATACTGGGCGAGGGCAGCACCAGTGACCGG	+
Preference number: 6 (lower is better) Translates to: AFSSCSLCINFF*RILGEGSTSDR Trigger: CCGGTCACTGGTGCTGCCCTCGCCCAGTATCCGTCAGAAGAAATTAATACACAAGCTGCAGGAGGAAAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017193.2 ENSMUST00000070649.2