Pregenerated sensors for CCDC69 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049588Ensembl transcript IDs: ENSMUST00000055040.13, ENSMUST00000108880.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGTGGCTCTTGCTTTGTTCTCCACAGAGTCTTTGGAGGGGGCAGTaGGTCTGGAAACCATGGTGGGCCCAGGCCCTGCACCTTTACACG | + |
|
Preference number: 1 (lower is better) Translates to: EWLLLCSPQSLWRGQ*VWKPWWAQALHLYT Trigger: CGTGTAAAGGTGCAGGGCCTGGGCCCACCATGGTTTCCAGACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGAGCCACTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR GCA 90 bp | AGGACAGAGCAAAGAGAGGAATATAACTGCCTGCTTGTTCCCTGCTaGCGACTAAGGAAAGGCACTTCTTGGGGTGGTCTCGGTGGTCCA | + |
|
Preference number: 1 (lower is better) Translates to: RTEQREEYNCLLVPC*RLRKGTSWGGLGGP Trigger: TGGACCACCGAGACCACCCCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAGTTATATTCCTCTCTTTGCTCTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR GCA 90 bp | ATGAGGACAGAGCAAAGAGAGGAATATAACTGCCTGCTTGTTCCCTaGTGCCGACTAAGGAAAGGCACTTCTTGGGGTGGTCTCGGTGGT | + |
|
Preference number: 1 (lower is better) Translates to: MRTEQREEYNCLLVP*CRLRKGTSWGGLGG Trigger: ACCACCGAGACCACCCCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAGTTATATTCCTCTCTTTGCTCTGTCCTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR GCA 90 bp | GTCTTAAATGCCCTCATGAGGACAGAGCAAAGAGAGGAATATAACTaGCTGCTTGTTCCCTGCTGCCGACTAAGGAAAGGCACTTCTTGG | + |
|
Preference number: 1 (lower is better) Translates to: VLNALMRTEQREEYN*LLVPCCRLRKGTSW Trigger: CCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAGTTATATTCCTCTCTTTGCTCTGTCCTCATGAGGGCATTTAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CAA 90 bp | ATGGTGGGCCCAGGCCCTGCACCTTTACACGGAGGGCAGAGGCCTTaGAGGTGTAGCAGAAGGCAAGGTAAGATGGAGGAGGTGCTAGCC | + |
|
Preference number: 2 (lower is better) Translates to: MVGPGPAPLHGGQRP*RCSRRQGKMEEVLA Trigger: GGCTAGCACCTCCTCCATCTTACCTTGCCTTCTGCTACACCTCAAAGGCCTCTGCCCTCCGTGTAAAGGTGCAGGGCCTGGGCCCACCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CAA 90 bp | CCCCCACCTTGTCCATCCTGGGAGAAGAATGGAGTGGCTCTTGCTTaGTTCTCCACAGAGTCTTTGGAGGGGGCAGTGAGTCTGGAAACC | + |
|
Preference number: 2 (lower is better) Translates to: PPPCPSWEKNGVALA*FSTESLEGAVSLET Trigger: GGTTTCCAGACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGAGCCACTCCATTCTTCTCCCAGGATGGACAAGGTGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR TCA 90 bp | TTTGGTTTCCTCACCAGCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAATAGGTCCTGGGGCCACTTaGCATTCCAATCCCCAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: FGFLTSKWGSGGGFHQKIGPGAT*HSNPQA Trigger: AGCCTGGGGATTGGAATGTCAAGTGGCCCCAGGACC...TATTTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGCTGGTGAGGAAACCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR-3UTR CCA 90 bp | GGTTTCCTCACCAGCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAATATGTCGGGTCCCTCCCAGCTaGAAGTTTTGGCAGAAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: GFLTSKWGSGGGFHQKICRVPPS*KFWQKA Trigger: AGCCTTCTGCCAAAACTTCCAGCTGGGAGGGACCCG...ACATATTTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGCTGGTGAGGAAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR-3UTR CCA 90 bp | GCTCCAGCTGCCACGGGAGAAGTCTTAAATGCCCTCATGAGGACAGAGCAAAGAGGGAGAAGAATGGAGTaGCTCTTGCTTTGTTCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: APAATGEVLNALMRTEQRGRRME*LLLCSP Trigger: TGGAGAACAAAGCAAGAGCCACTCCATTCTTCTCCC...TCTTTGCTCTGTCCTCATGAGGGCATTTAAGACTTCTCCCGTGGCAGCTGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR TCA 90 bp | GGTTTTGGTTTCCTCACCAGCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAAAAAACTGGGCTTTCTaGCTCCCAAGGAAAGAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: GFGFLTSKWGSGGGFHQKKNWAF*LPRKEE Trigger: CTCCTCTTTCCTTGGGAGTCAGAAAGCCCAGTTTTT...TTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGCTGGTGAGGAAACCAAAACC 49% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTATTAGCTCTACAGCAAATTCAACCTTTTATCTGGCTAGATGTGGTGGGACAGTCTGGAAACCATGGTaGGCCCAGGCCCTGCACCTT | + |
|
Preference number: 2 (lower is better) Translates to: LISSTANSTFYLARCGGTVWKPW*AQALHL Trigger: AAGGTGCAGGGCCTGGGCCCACCATGGTTTCCAGAC...TGTCCCACCACATCTAGCCAGATAAAAGGTTGAATTTGCTGTAGAGCTAATAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR CCA 90 bp | CTTATTAGCTCTACAGCAAATTCAACCTTTTATCTGGCTAGATGTGGTGGGACAGTCAGACGGTGCAAATaGCTCCAGCTGCCACGGGAG | + |
|
Preference number: 2 (lower is better) Translates to: LISSTANSTFYLARCGGTVRRCK*LQLPRE Trigger: CTCCCGTGGCAGCTGGAGCCATTTGCACCGTCTGAC...TGTCCCACCACATCTAGCCAGATAAAAGGTTGAATTTGCTGTAGAGCTAATAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR TCA 90 bp | TCAGTAAAAACAACACTGTGTTCCTGTTTCTTGGATTGTGTCTCTTGCAGTTTTGAGGGCAGAGGCCTTTaGGGTGTAGCAGAAGGCAAG | + |
|
Preference number: 2 (lower is better) Translates to: SVKTTLCSCFLDCVSCSFEGRGL*GVAEGK Trigger: CTTGCCTTCTGCTACACCTCAAAGGCCTCTGCCCTC...AAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGTTTTTACTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CAA 90 bp | TGCTCTCTACTCAGTAAAAACAACACTGTGTTCCTGTTTCTTGGATaGTGTCTCTTGCAGTTTTTCTCTGAGTCAGAGTTATGGGTGTGG | + |
|
Preference number: 2 (lower is better) Translates to: CSLLSKNNTVFLFLG*CLLQFFSESELWVW Trigger: CCACACCCATAACTCTGACTCAGAGAAAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGTTTTTACTGAGTAGAGAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR TCA 90 bp | TTGAGTTCAAGGTTAGGATGCTCTCTACTCAGTAAAAACAACACTGTGTTCCTGCTTGCAGTTTTTCTCTaGGTCAGAGTTATGGGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: LSSRLGCSLLSKNNTVFLLAVFL*VRVMGV Trigger: CACACCCATAACTCTGACTCAGAGAAAAACTGCAAG...CAGGAACACAGTGTTGTTTTTACTGAGTAGAGAGCATCCTAACCTTGAACTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR GCA 90 bp | TTAGGATGCTCTCTACTCAGTAAAAACAACACTGTGTTCCTGTTTCTTGGATTGGGGAGAAGTCTTAAATaGCCTCATGAGGACAGAGCA | + |
|
Preference number: 2 (lower is better) Translates to: LGCSLLSKNNTVFLFLGLGRSLK*PHEDRA Trigger: TGCTCTGTCCTCATGAGGGCATTTAAGACTTCTCCC...CAATCCAAGAAACAGGAACACAGTGTTGTTTTTACTGAGTAGAGAGCATCCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR GCA 90 bp | GTGACTTTGAGTTCAAGGTTAGGATGCTCTCTACTCAGTAAAAACAACACTGTGTTGGATTGTGTCTCTTaGAGTTTTTCTCTGAGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: VTLSSRLGCSLLSKNNTVLDCVS*SFSLSQ Trigger: CTGACTCAGAGAAAAACTGCAAGAGACACAATCCAA...CACAGTGTTGTTTTTACTGAGTAGAGAGCATCCTAACCTTGAACTCAAAGTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR TCA 72 bp | AATCCTCATAGGTTGGAGTTCTGGGTGGCTCCGGGCTaGGCCTCCCTGCCTAGCTGGGTCACCTGGGGTGGC | + |
|
Preference number: 3 (lower is better) Translates to: NPHRLEFWVAPG*ASLPSWVTWGG Trigger: GCCACCCCAGGTGACCCAGCTAGGCAGGGAGGCTCAGCCCGGAGCCACCCAGAACTCCAACCTATGAGGATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR GCA 72 bp | GGCAGTGAGTCTGGAAACCATGGTGGGCCCAGGCCCTaGACCTTTACACGGAGGGCAGAGGCCTTTGAGGTG | + |
|
Preference number: 3 (lower is better) Translates to: GSESGNHGGPRP*TFTRRAEAFEV Trigger: CACCTCAAAGGCCTCTGCCCTCCGTGTAAAGGTGCAGGGCCTGGGCCCACCATGGTTTCCAGACTCACTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR TCA 72 bp | AGGAGTCACGTTCCCAAGACAGGTCCTGGGGCCACTTaGCATTCCAATCCCCAGGCTCTTCCGGGTCCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: RSHVPKTGPGAT*HSNPQALPGPS Trigger: GGAGGGACCCGGAAGAGCCTGGGGATTGGAATGTCAAGTGGCCCCAGGACCTGTCTTGGGAACGTGACTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR TCA 72 bp | CAGGCCCTGCACCTTTACACGGAGGGCAGAGGCCTTTaGGGTGTAGCAGAAGGCAAGGTAAGATGGAGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: QALHLYTEGRGL*GVAEGKVRWRR Trigger: CCTCCTCCATCTTACCTTGCCTTCTGCTACACCTCAAAGGCCTCTGCCCTCCGTGTAAAGGTGCAGGGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR TCA 72 bp | TTGCTTTGTTCTCCACAGAGTCTTTGGAGGGGGCAGTaGGTCTGGAAACCATGGTGGGCCCAGGCCCTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: LLCSPQSLWRGQ*VWKPWWAQALH Trigger: GTGCAGGGCCTGGGCCCACCATGGTTTCCAGACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR TCA 72 bp | GGTGGGACATGCCCATGTTCCCAGCACTCCGGAGGCTaGGGCAGAGTGACTTTGAGTTCAAGGTTAGGATGC | + |
|
Preference number: 3 (lower is better) Translates to: GGTCPCSQHSGG*GRVTLSSRLGC Trigger: GCATCCTAACCTTGAACTCAAAGTCACTCTGCCTCAGCCTCCGGAGTGCTGGGAACATGGGCATGTCCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CCA 72 bp | CCAAGGAAAGAGGAGTCACGTTCCCAAGACAGGTCCTaGGGCCACTTGACATTCCAATCCCCAGGCTCTTCC | + |
|
Preference number: 3 (lower is better) Translates to: PRKEESRSQDRS*GHLTFQSPGSS Trigger: GGAAGAGCCTGGGGATTGGAATGTCAAGTGGCCCCAGGACCTGTCTTGGGAACGTGACTCCTCTTTCCTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR CCA 72 bp | TCCCTGCTGCCGACTAAGGAAAGGCACTTCTTGGGGTaGTCTCGGTGGTCCAAACTTCCCCATCAGCTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: SLLPTKERHFLG*SRWSKLPHQLC Trigger: ACAAAGCTGATGGGGAAGTTTGGACCACCGAGACCACCCCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CCA 72 bp | CCGACTAAGGAAAGGCACTTCTTGGGGTGGTCTCGGTaGTCCAAACTTCCCCATCAGCTTTGTAGAAGCGTC | + |
|
Preference number: 3 (lower is better) Translates to: PTKERHFLGWSR*SKLPHQLCRSV Trigger: GACGCTTCTACAAAGCTGATGGGGAAGTTTGGACCACCGAGACCACCCCAAGAAGTGCCTTTCCTTAGTCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR-3UTR CAA 90 bp | AGGACAGAGCAAAGAGAGGAATATAACTGCCTGCTTGTTCCCTGCTGCCGACTAGGAGGGCAGAGGCCTTaGAGGTGTAGCAGAAGGCAA | + |
|
Preference number: 3 (lower is better) Translates to: RTEQREEYNCLLVPCCRLGGQRP*RCSRRQ Trigger: TTGCCTTCTGCTACACCTCAAAGGCCTCTGCCCTCC...TAGTCGGCAGCAGGGAACAAGCAGGCAGTTATATTCCTCTCTTTGCTCTGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR GCA 72 bp | GCCCTCATGAGGACAGAGCAAAGAGAGGAATATAACTaGCTGCTTGTTCCCTGCTGCCGACTAAGGAAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: ALMRTEQREEYN*LLVPCCRLRKG Trigger: GCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAGTTATATTCCTCTCTTTGCTCTGTCCTCATGAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR GCA 72 bp | CAAAGAGAGGAATATAACTGCCTGCTTGTTCCCTGCTaGCGACTAAGGAAAGGCACTTCTTGGGGTGGTCTC | + |
|
Preference number: 3 (lower is better) Translates to: QREEYNCLLVPC*RLRKGTSWGGL Trigger: GAGACCACCCCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAGTTATATTCCTCTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CCA 72 bp | GTTGGTGAATTGTCAGCAAAACTGATGATCTGGGATTaGGGTTGTCCCCTCTTTGTCAGACGGTGCAAATGG | + |
|
Preference number: 3 (lower is better) Translates to: VGELSAKLMIWD*GCPLFVRRCKW Trigger: CCATTTGCACCGTCTGACAAAGAGGGGACAACCCCAATCCCAGATCATCAGTTTTGCTGACAATTCACCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR TCA 72 bp | TGTTTCCTGTTTCTCATGTTGAAAAACTGGGCTTTCTaGCTCCCAAGGAAAGAGGAGTCACGTTCCCAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: CFLFLMLKNWAF*LPRKEESRSQD Trigger: GTCTTGGGAACGTGACTCCTCTTTCCTTGGGAGTCAGAAAGCCCAGTTTTTCAACATGAGAAACAGGAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR GCA 72 bp | TACAAAGCCTCAGGACCGATTTGTTCCACGCATGCCTaGTTTGGTAGATTGTTTCCTGTTTCCTGTTTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: YKASGPICSTHA*FGRLFPVSCFS Trigger: TGAGAAACAGGAAACAGGAAACAATCTACCAAAGCAGGCATGCGTGGAACAAATCGGTCCTGAGGCTTTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR CCA 72 bp | TGCTTATTAGCTCTACAGCAAATTCAACCTTTTATCTaGCTAGATGTGGTGGGACATGCCCATGTTCCCAGC | + |
|
Preference number: 3 (lower is better) Translates to: CLLALQQIQPFI*LDVVGHAHVPS Trigger: GCTGGGAACATGGGCATGTCCCACCACATCTAGCCAGATAAAAGGTTGAATTTGCTGTAGAGCTAATAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR TCA 72 bp | TTCCACCAGAAAATATGTCACATATTCAACTGCCCATaGCACAGGACATCAGCGCTCACTTACAAAGCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: FHQKICHIFNCP*HRTSALTYKAS Trigger: TGAGGCTTTGTAAGTGAGCGCTGATGTCCTGTGTCATGGGCAGTTGAATATGTGACATATTTTCTGGTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR GCA 72 bp | ACAACACTGTGTTCCTGTTTCTTGGATTGTGTCTCTTaGAGTTTTTCTCTGAGTCAGAGTTATGGGTGTGGC | + |
|
Preference number: 3 (lower is better) Translates to: TTLCSCFLDCVS*SFSLSQSYGCG Trigger: GCCACACCCATAACTCTGACTCAGAGAAAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | GGGTGGCTCCGGGCTGAGCCTCCCTGCCTAGCTGGGTCACCTGGGGTGGCATGGCTCTTCCACCTTCTCTaGGCGCTTGCCGCGGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: GWLRAEPPCLAGSPGVAWLFHLL*ALAAAV Trigger: CACAGCCGCGGCAAGCGCGCAGAGAAGGTGGAAGAG...CCATGCCACCCCAGGTGACCCAGCTAGGCAGGGAGGCTCAGCCCGGAGCCACCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR GCA 90 bp | CTTTCTGACTCCCAAGGAAAGAGGAGTCACGTTCCCAAGACAGGTCCTGGGGCCCGCTTGCCGCGGCTGTaGCGGCTTTGCCTGCAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LSDSQGKRSHVPKTGPGARLPRL*RLCLQP Trigger: GGGCTGCAGGCAAAGCCGGCACAGCCGCGGCAAGCG...GGCCCCAGGACCTGTCTTGGGAACGTGACTCCTCTTTCCTTGGGAGTCAGAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR CAA 72 bp | GAGGAGTCACGTTCCCAAGACAGGTCCTGGGGCCACTaGACATTCCAATCCCCAGGCTCTTCCGGGTCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: EESRSQDRSWGH*TFQSPGSSGSL Trigger: GAGGGACCCGGAAGAGCCTGGGGATTGGAATGTCAAGTGGCCCCAGGACCTGTCTTGGGAACGTGACTCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR GCA 90 bp | CTGCCTGCTTGTTCCCTGCTGCCGACTAAGGAAAGGCACTTCTTGGGGTGGTCTCTCTTCCACCTTCTCTaGGCGCTTGCCGCGGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LPACSLLPTKERHFLGWSLFHLL*ALAAAV Trigger: CACAGCCGCGGCAAGCGCGCAGAGAAGGTGGAAGAG...AGACCACCCCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | GCAGTGAGTCTGGAAACCATGGTGGGCCCAGGCCCTGCACCTTTACACGGAGGGTGCCCAGCCTCCTCATaGCTTCCTTCCAGGATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: AVSLETMVGPGPAPLHGGCPASS*LPSRIL Trigger: AAGGATCCTGGAAGGAAGGCATGAGGAGGCTGGGCA...CCCTCCGTGTAAAGGTGCAGGGCCTGGGCCCACCATGGTTTCCAGACTCACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | GGCTCTTCCGGGTCCCTCCCAGCTGGAAGTTTTGGCAGAAGGCTGGGGATAGGAGATGTCTGCGGGACTTaGCCAGCCTCCTCATGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: GSSGSLPAGSFGRRLGIGDVCGT*PASSCL Trigger: AAGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATC...TCCTATCCCCAGCCTTCTGCCAAAACTTCCAGCTGGGAGGGACCCGGAAGAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR TCA 90 bp | GTCTGGAAACCATGGTGGGCCCAGGCCCTGCACCTTTACACGGAGGGCAGAGGCTCCTTTTCAAGGTCCTaGAGTAGGTCTTTCCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: VWKPWWAQALHLYTEGRGSFSRS*SRSFRS Trigger: GCTCCGGAAAGACCTACTTCAGGACCTTGAAAAGGA...GCCTCTGCCCTCCGTGTAAAGGTGCAGGGCCTGGGCCCACCATGGTTTCCAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR CCA 90 bp | ATCCCCAGGCTCTTCCGGGTCCCTCCCAGCTGGAAGTTTTGGCAGAAGGCTGGGCCTCCTGCCGCAGGGTaGTGTTTTTCAGTGCTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: IPRLFRVPPSWKFWQKAGPPAAG*CFSVLR Trigger: TCTTAGCACTGAAAAACACCACCCTGCGGCAGGAGG...CCCAGCCTTCTGCCAAAACTTCCAGCTGGGAGGGACCCGGAAGAGCCTGGGGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR CCA 90 bp | TGGCTAGATGTGGTGGGACATGCCCATGTTCCCAGCACTCCGGAGGCTGAGGCACCTCCTGCCGCAGGGTaGTGTTTTTCAGTGCTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: WLDVVGHAHVPSTPEAEAPPAAG*CFSVLR Trigger: TCTTAGCACTGAAAAACACCACCCTGCGGCAGGAGG...TGCCTCAGCCTCCGGAGTGCTGGGAACATGGGCATGTCCCACCACATCTAGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CAA 72 bp | CCAGGCCCTGCACCTTTACACGGAGGGCAGAGGCCTTaGAGGTGTAGCAGAAGGCAAGGTAAGATGGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: PGPAPLHGGQRP*RCSRRQGKMEE Trigger: CTCCTCCATCTTACCTTGCCTTCTGCTACACCTCAAAGGCCTCTGCCCTCCGTGTAAAGGTGCAGGGCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR CCA 90 bp | GCAGTGAGTCTGGAAACCATGGTGGGCCCAGGCCCTGCACCTTTACACGGAGGGGAGGCTTTGGCCTCTTaGATGCAATCACTAAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: AVSLETMVGPGPAPLHGGEALAS*MQSLRE Trigger: CTCTCTTAGTGATTGCATCCAAGAGGCCAAAGCCTC...CCCTCCGTGTAAAGGTGCAGGGCCTGGGCCCACCATGGTTTCCAGACTCACTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR TCA 90 bp | CTGCCTGCTTGTTCCCTGCTGCCGACTAAGGAAAGGCACTTCTTGGGGTGGTCTTCCTGTGGTGAGACATaGCTTGCACAGGTGTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LPACSLLPTKERHFLGWSSCGET*LAQVFC Trigger: GCAGAACACCTGTGCAAGTCATGTCTCACCACAGGA...AGACCACCCCAAGAAGTGCCTTTCCTTAGTCGGCAGCAGGGAACAAGCAGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | CACTTGACATTCCAATCCCCAGGCTCTTCCGGGTCCCTCCCAGCTGGAAGTTTTTGCCCAGCCTCCTCATaGCTTCCTTCCAGGATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: HLTFQSPGSSGSLPAGSFCPASS*LPSRIL Trigger: AAGGATCCTGGAAGGAAGGCATGAGGAGGCTGGGCA...AAAACTTCCAGCTGGGAGGGACCCGGAAGAGCCTGGGGATTGGAATGTCAAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR CAA 72 bp | AATGGAGTGGCTCTTGCTTTGTTCTCCACAGAGTCTTaGGAGGGGGCAGTGAGTCTGGAAACCATGGTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: NGVALALFSTES*EGAVSLETMVG Trigger: GCCCACCATGGTTTCCAGACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGAGCCACTCCATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | CTTATTAGCTCTACAGCAAATTCAACCTTTTATCTGGCTAGATGTGGTGGGACACGCTTGCCGCGGCTGTaGCGGCTTTGCCTGCAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LISSTANSTFYLARCGGTRLPRL*RLCLQP Trigger: GGGCTGCAGGCAAAGCCGGCACAGCCGCGGCAAGCG...TGTCCCACCACATCTAGCCAGATAAAAGGTTGAATTTGCTGTAGAGCTAATAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | TCTTGCTTTGTTCTCCACAGAGTCTTTGGAGGGGGCAGTGAGTCTGGAAACCATGATGTCTGCGGGACTTaGCCAGCCTCCTCATGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SCFVLHRVFGGGSESGNHDVCGT*PASSCL Trigger: AAGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATC...ATGGTTTCCAGACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | GCTCCAGCTGCCACGGGAGAAGTCTTAAATGCCCTCATGAGGACAGAGCAAAGAAAACTCTCCAGCTCTTaGTCCCAGAATGGGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: APAATGEVLNALMRTEQRKLSSS*SQNGPG Trigger: TCCTGGCCCATTCTGGGAGCAAGAGCTGGAGAGTTT...TCTTTGCTCTGTCCTCATGAGGGCATTTAAGACTTCTCCCGTGGCAGCTGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR CCA 90 bp | ACTCCCAAGGAAAGAGGAGTCACGTTCCCAAGACAGGTCCTGGGGCCACTTGACGAGGCTTTGGCCTCTTaGATGCAATCACTAAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: TPKERGVTFPRQVLGPLDEALAS*MQSLRE Trigger: CTCTCTTAGTGATTGCATCCAAGAGGCCAAAGCCTC...GTCAAGTGGCCCCAGGACCTGTCTTGGGAACGTGACTCCTCTTTCCTTGGGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| 3UTR CAA 72 bp | TGTCCATCCTGGGAGAAGAATGGAGTGGCTCTTGCTTaGTTCTCCACAGAGTCTTTGGAGGGGGCAGTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: CPSWEKNGVALA*FSTESLEGAVS Trigger: ACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGAGCCACTCCATTCTTCTCCCAGGATGGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR CCA 90 bp | AGAAGAATGGAGTGGCTCTTGCTTTGTTCTCCACAGAGTCTTTGGAGGGGGCAGCTCTTGCTCCCAGAATaGGCCAGGACTCCCATAATC | + |
|
Preference number: 4 (lower is better) Translates to: RRMEWLLLCSPQSLWRGQLLLPE*ARTPII Trigger: GATTATGGGAGTCCTGGCCCATTCTGGGAGCAAGAG...CTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGAGCCACTCCATTCTTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | GGTTTTGGTTTCCTCACCAGCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAAAACTCTCCAGCTCTTaGTCCCAGAATGGGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GFGFLTSKWGSGGGFHQKKLSSS*SQNGPG Trigger: TCCTGGCCCATTCTGGGAGCAAGAGCTGGAGAGTTT...TTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGCTGGTGAGGAAACCAAAACC 51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR TCA 90 bp | CTCACCAGCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAATATGTCACATATCCTGTGGTGAGACATaGCTTGCACAGGTGTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LTSKWGSGGGFHQKICHISCGET*LAQVFC Trigger: GCAGAACACCTGTGCAAGTCATGTCTCACCACAGGA...TATGTGACATATTTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGCTGGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR CCA 90 bp | TTTGGTTTCCTCACCAGCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAATACTCTTGCTCCCAGAATaGGCCAGGACTCCCATAATC | + |
|
Preference number: 4 (lower is better) Translates to: FGFLTSKWGSGGGFHQKILLLPE*ARTPII Trigger: GATTATGGGAGTCCTGGCCCATTCTGGGAGCAAGAG...TATTTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGCTGGTGAGGAAACCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR GCA 90 bp | AGTAAAAACAACACTGTGTTCCTGTTTCTTGGATTGTGTCTCTTGCAGTTTTTCAGTGGCTCCTCCGTCTaGTGCAGCAGTGGCCGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SKNNTVFLFLGLCLLQFFSGSSV*CSSGRS Trigger: AGAACGGCCACTGCTGCAGCAGACGGAGGAGCCACT...GAAAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGTTTTTACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR GCA 90 bp | TTGAGTTCAAGGTTAGGATGCTCTCTACTCAGTAAAAACAACACTGTGTTCCTGTCCTTCTTTGTCCAGTaGCTCCAGGAGTTCTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LSSRLGCSLLSKNNTVFLSFFVQ*LQEFCL Trigger: CAGACAGAACTCCTGGAGGCACTGGACAAAGAAGGA...CAGGAACACAGTGTTGTTTTTACTGAGTAGAGAGCATCCTAACCTTGAACTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CAA 72 bp | AACAACACTGTGTTCCTGTTTCTTGGATTGTGTCTCTaGCAGTTTTTCTCTGAGTCAGAGTTATGGGTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: NNTVFLFLGLCL*QFFSESELWVW Trigger: CCACACCCATAACTCTGACTCAGAGAAAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR CCA 90 bp | GTGACTTTGAGTTCAAGGTTAGGATGCTCTCTACTCAGTAAAAACAACACTGTGTTCATCTCAATAACATaGTGTAAACTCTCCAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VTLSSRLGCSLLSKNNTVFISIT*CKLSSS Trigger: AGAGCTGGAGAGTTTACACCATGTTATTGAGATGAA...CACAGTGTTGTTTTTACTGAGTAGAGAGCATCCTAACCTTGAACTCAAAGTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| 3UTR CAA 72 bp | CTCAGTAAAAACAACACTGTGTTCCTGTTTCTTGGATaGTGTCTCTTGCAGTTTTTCTCTGAGTCAGAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: LSKNNTVFLFLG*CLLQFFSESEL Trigger: TAACTCTGACTCAGAGAAAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGTTTTTACTGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS-3UTR CAA 90 bp | GGCTCTTCCGGGTCCCTCCCAGCTGGAAGTTTTGGCAGAAGGCTGGGGATAGGAGTGGTGAGACATGACTaGCACAGGTGTTCTGCAACG | + |
|
Preference number: 5 (lower is better) Translates to: GSSGSLPAGSFGRRLGIGVVRHD*HRCSAT Trigger: CGTTGCAGAACACCTGTGCAAGTCATGTCTCACCAC...TCCTATCCCCAGCCTTCTGCCAAAACTTCCAGCTGGGAGGGACCCGGAAGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR CAA 90 bp | TCTTGCTTTGTTCTCCACAGAGTCTTTGGAGGGGGCAGTGAGTCTGGAAACCATCGATGTCTGCGGGACTaGCCCAGCCTCCTCATGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SCFVLHRVFGGGSESGNHRCLRD*PSLLMP Trigger: AGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATCG...ATGGTTTCCAGACTCACTGCCCCCTCCAAAGACTCTGTGGAGAACAAAGCAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS GCA 90 bp | GGCTTTGGCCTCTTGGATGCAATCACTAAGAGAGACTTTCTCCTGTaGATTCGATGTCTGCGGGACTTGCCCAGCCTCCTCATGCCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: GFGLLDAITKRDFLL*IRCLRDLPSLLMPS Trigger: GGAAGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATCGAATGCACAGGAGAAAGTCTCTCTTAGTGATTGCATCCAAGAGGCCAAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS GCA 90 bp | TCACTAAGAGAGACTTTCTCCTGTGCATTCGATGTCTGCGGGACTTaGCCAGCCTCCTCATGCCTTCCTTCCAGGATCCTTCCTTCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: SLRETFSCAFDVCGT*PASSCLPSRILPSL Trigger: CAAAGAAGGAAGGATCCTGGAAGGAAGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATCGAATGCACAGGAGAAAGTCTCTCTTAGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS-3UTR CAA 90 bp | GCAAATGGGGATCTGGAGGAGGATTCCACCAGAAAATATGTCACATATTCAACTCGATGTCTGCGGGACTaGCCCAGCCTCCTCATGCCT | + |
|
Preference number: 5 (lower is better) Translates to: ANGDLEEDSTRKYVTYSTRCLRD*PSLLMP Trigger: AGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATCG...AGTTGAATATGTGACATATTTTCTGGTGGAATCCTCCTCCAGATCCCCATTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108880.2 |
||
| CDS-3UTR CAA 90 bp | AGTAAAAACAACACTGTGTTCCTGTTTCTTGGATTGTGTCTCTTGCAGTTTTTCGTGGTGAGACATGACTaGCACAGGTGTTCTGCAACG | + |
|
Preference number: 5 (lower is better) Translates to: SKNNTVFLFLGLCLLQFFVVRHD*HRCSAT Trigger: CGTTGCAGAACACCTGTGCAAGTCATGTCTCACCAC...GAAAAACTGCAAGAGACACAATCCAAGAAACAGGAACACAGTGTTGTTTTTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055040.13 |
||
| CDS TCA 90 bp | TTTTCTTTCAGCATCTCCAGGAGGAACAGCTGCTTCTCAAGTTCGTaGATTCGTTCATTCTTCATCTCAATAACATGGTGTAAACTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: FSFSISRRNSCFSSS*IRSFFISITWCKLS Trigger: GGAGAGTTTACACCATGTTATTGAGATGAAGAATGAACGAATTCACGAACTTGAGAAGCAGCTGTTCCTCCTGGAGATGCTGAAAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS CAA 72 bp | AGAGACTTTCTCCTGTGCATTCGATGTCTGCGGGACTaGCCCAGCCTCCTCATGCCTTCCTTCCAGGATCCT | + |
|
Preference number: 6 (lower is better) Translates to: RDFLLCIRCLRD*PSLLMPSFQDP Trigger: AGGATCCTGGAAGGAAGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATCGAATGCACAGGAGAAAGTCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS CAA 90 bp | ACTTGCCCAGCCTCCTCATGCCTTCCTTCCAGGATCCTTCCTTCTTaGTCCAGTGCCTCCAGGAGTTCTGTCTGTGTCTCTTCCACCTTC | + |
|
Preference number: 6 (lower is better) Translates to: TCPASSCLPSRILPS*SSASRSSVCVSSTF Trigger: GAAGGTGGAAGAGACACAGACAGAACTCCTGGAGGCACTGGACAAAGAAGGAAGGATCCTGGAAGGAAGGCATGAGGAGGCTGGGCAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS GCA 72 bp | TCACTAAGAGAGACTTTCTCCTGTGCATTCGATGTCTaGGGGACTTGCCCAGCCTCCTCATGCCTTCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SLRETFSCAFDV*GTCPASSCLPS Trigger: GGAAGGAAGGCATGAGGAGGCTGGGCAAGTCCCGCAGACATCGAATGCACAGGAGAAAGTCTCTCTTAGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS GCA 72 bp | CTCTTGGATGCAATCACTAAGAGAGACTTTCTCCTGTaGATTCGATGTCTGCGGGACTTGCCCAGCCTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: LLDAITKRDFLL*IRCLRDLPSLL Trigger: GAGGAGGCTGGGCAAGTCCCGCAGACATCGAATGCACAGGAGAAAGTCTCTCTTAGTGATTGCATCCAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||
| CDS TCA 72 bp | AGCATCTCCAGGAGGAACAGCTGCTTCTCAAGTTCGTaGATTCGTTCATTCTTCATCTCAATAACATGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: SISRRNSCFSSS*IRSFFISITWC Trigger: ACACCATGTTATTGAGATGAAGAATGAACGAATTCACGAACTTGAGAAGCAGCTGTTCCTCCTGGAGATGCT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055040.13 ENSMUST00000108880.2 |
||