Pregenerated sensors for CCDC65 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003354Ensembl transcript IDs: ENSMUST00000003444.6, ENSMUST00000229471.2
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCCCGGGTTCTGGAGCTTaGCCTCTTCCTGCTCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SVCLSECACPSEHESKARPGSGA*PLPAPR Trigger: CCGAGGAGCAGGAAGAGGCCAAGCTCCAGAACCCGG...GCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTAAGAGCGGGTTGAGGTaGCTCAGCACTTCGTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: LSVCLSVPVHLSMRAKHAKSGLR*LSTSSL Trigger: GAGCGACGAAGTGCTGAGCCACCTCAACCCGCTCTT...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | TCTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCGATAGGGTCCGAGCCTaGGTCCTCTGGACCTTAAGT | + |
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Preference number: 4 (lower is better) Translates to: SVCLSECACPSEHESKARDRVRA*VLWTLS Trigger: ACTTAAGGTCCAGAGGACCCAGGCTCGGACCCTATC...GCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | CTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACCATCCAAGTACTGTTTaGGCATCTCCCGCAGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LSECACPSEHESKARWFHHPSTV*ASPAAC Trigger: GCAAGCTGCGGGAGATGCTCAAACAGTACTTGGATG...GTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | TCTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCCTCTTTCTTCTTGGCTaGCTCTTCGTCAGCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: SVCLSECACPSEHESKARLFLLG*LFVSQH Trigger: ATGCTGGCTGACGAAGAGGCAGCCAAGAAGAAAGAG...GCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTGTAATTCTTGAGTaGATCCTGGAACCTCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: LSVCLSVPVHLSMRAKHAGVILE*ILEPPP Trigger: TGGCGGAGGTTCCAGGATGCACTCAAGAATTACACC...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | TGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCGAGCCAAGGATCTCGATGTCTTGGTaGAGCTCTCTGGTCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: CLNHRNFKSGRWRHAEPRISMSW*SSLVFT Trigger: GGTGAAGACCAGAGAGCTTCACCAAGACATCGAGAT...CCTTGGCTCGGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
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| CDS-3UTR CCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAGAGGGTGGGGGCAGCTaGGGTAGGTTGCTTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKEGGGS*GRLLLW Trigger: CCACAGAAGCAACCTACCCCAGCTGCCCCCACCCTC...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACCCGCAGCTTGCTACTaGTATCCAGCAGCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKPAACY*YPAAAA Trigger: GGCTGCAGCTGCTGGATATCAGTAGCAAGCTGCGGG...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | TTCTGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCGAGCCACTCTTTCTTCTTGGCTaGCTCTTCGTCAGCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: FCLNHRNFKSGRWRHAEPLFLLG*LFVSQH Trigger: ATGCTGGCTGACGAAGAGGCAGCCAAGAAGAAAGAG...TGGCTCGGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
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| CDS-3UTR GCA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTTCTGGAACTCCAGCTTaGTCTCATACTCGGAATCTA | + |
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Preference number: 4 (lower is better) Translates to: LSVCLSVPVHLSMRAKHASGTPA*SHTRNL Trigger: TAGATTCCGAGTATGAGAGCAAGCTGGAGTTCCAGA...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTTTGTCCTTCAAGAACTaGGTGAGGAGTCTCTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LSVCLSVPVHLSMRAKHALSFKN*VRSLSF Trigger: GAAAGAGAGACTCCTCACCCAGTTCTTGAAGGACAA...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | AACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCGAGCCAAGGAAGCAGTTGTCCTTCAAGAACTaGGTGAGGAGTCTCTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: NHRNFKSGRWRHAEPRKQLSFKN*VRSLSF Trigger: GAAAGAGAGACTCCTCACCCAGTTCTTGAAGGACAA...CTGCTTCCTTGGCTCGGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
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| CDS-3UTR GCA 90 bp | CTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACATACCTATGGTCTCCTaGAGCTTCTGGATCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LSECACPSEHESKARWFHIPMVS*SFWIFF Trigger: GAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTAT...GTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAAGCTTGGCCTCTTCCTaGTCCTCGGGAGTCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKSLASS*SSGVST Trigger: AGTGCTGACTCCCGAGGAGCAGGAAGAGGCCAAGCT...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACTCGGGAGTCAGCACTaGAGAGTAGAAAGGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKLGSQH*RVERQH Trigger: GTGCTGCCTTTCTACTCTTCAGTGCTGACTCCCGAG...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTTGGATCTTTTTCATCTaGGTCTCAATCTCTTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LSVCLSVPVHLSMRAKHAWIFFI*VSISLE Trigger: CTCCAAAGAGATTGAGACGCAGATGAAAAAGATCCA...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAACGTCGGTGTAATTCTTaGGTGCATCCTGGAACCTCC | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKRRCNS*VHPGTS Trigger: GGAGGTTCCAGGATGCACTCAAGAATTACACCGACG...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAACCTTCTTCAGGGCCTTaGGGGTGGCATTACTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKPSSGP*GWHYFP Trigger: TGGAAAGTAATGCCACCCTCAAGGCCCTGAAGAAGG...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACCGTCTCAAACTCTTTaGTCAGGACCTCGAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKPSQTL*SGPRAP Trigger: TGGAGCTCGAGGTCCTGACCAAAGAGTTTGAGACGG...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAATATGGGAGGCAATGTaGGCGGCTTCGATGACGTTG | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKIWEAM*AASMTL Trigger: CAACGTCATCGAAGCCGCCCACATTGCCTCCCATAT...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAATCTCGATGTCTTGGTaGAGCTCTCTGGTCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKISMSW*SSLVFT Trigger: GGTGAAGACCAGAGAGCTTCACCAAGACATCGAGAT...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR TCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAATTATTCCGGATGCACTaGTTCTGCCATTCCCCTTCG | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKLFRMH*FCHSPS Trigger: CGAAGGGGAATGGCAGAATCAGTGCATCCGGAATAA...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAGTCTCTCTTTCTTCTTaGCTGCCTCTTCGTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKVSLSS*LPLRQP Trigger: TGGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGAC...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACGCGTTCAAAGGTCTaGCTGAGGATCTCGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKTRSKV*LRISMS Trigger: AGACATCGAGATCCTCAGCCAGACCTTTGAACGCGT...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAATCATCCCACATGCTCTaGAACTCCAGCTTGCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKSSHML*NSSLLS Trigger: TGAGAGCAAGCTGGAGTTCCAGAGCATGTGGGATGA...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAATTCTTGAGTGCATCCTaGAACCTCCGCCACAGATCT | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKFLSAS*NLRHRS Trigger: AGATCTGTGGCGGAGGTTCCAGGATGCACTCAAGAA...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CCA 90 bp | ATACACAGGCTTTATTTCTGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGGTCTCTCTTTCTTCTTaGCTGCCTCTTCGTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: IHRLYFCLNHRNFKSGRWVSLSS*LPLRQP Trigger: TGGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGAC...CCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCAGAAATAAAGCCTGTGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
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| CDS-3UTR CCA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAGTCTCCTGCAGCTTCTaGATCTTTTTCATCTGCGTC | + |
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Preference number: 4 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKVSCSF*IFFICV Trigger: GACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGAC...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | CTTTATTTCTGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCAGGATGGTTCTCCACTaGGTGTTAATCTTATTAAGG | + |
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Preference number: 4 (lower is better) Translates to: LYFCLNHRNFKSGRWRHARMVLH*VLILLR Trigger: CCTTAATAAGATTAACACGCAGTGGAGAACCATCCT...GGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCAGAAATAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
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| CDS-3UTR TCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAATCTCATGATGGTCAATaGTCAATTTCCTTTCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKSHDGQ*SISFPS Trigger: AGACGGAAAGGAAATTGATCATTGACCATCATGAGA...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAGGATGGTTCTCCACTaGGTGTTAATCTTATTAAGG | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKRMVLH*VLILLR Trigger: CCTTAATAAGATTAACACGCAGTGGAGAACCATCCT...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR GCA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAATGTAGGCGAAGAAAGTaGTTCTCTTCTAAATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: CPSEHESKARWFHKRKGKCRRRK*FSSKFL Trigger: CAAGAATTTAGAAGAGAAGCACTTTCTTCGCCTACA...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS TCA 90 bp | AGCCGGCGTCGTTGCAGGGTCAAGAGCTGGTCAATGTTGTGCAAGTaGCTACGCAGAGCGTGGGCATACTGCTCCTCAGCTTCAGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: SRRRCRVKSWSMLCK*LRRAWAYCSSASVK Trigger: CTTGACTGAAGCTGAGGAGCAGTATGCCCACGCTCTGCGTAGTCACTTGCACAACATTGACCAGCTCTTGACCCTGCAACGACGCCGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS TCA 90 bp | TCCACCACGCGTTCAAAGGTCTGGCTGAGGATCTCGATGTCTTGGTaGAGCTCTCTGGTCTTCACCTCCCTGAGGATGGTTCTCCACTGC | + |
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Preference number: 5 (lower is better) Translates to: STTRSKVWLRISMSW*SSLVFTSLRMVLHC Trigger: GCAGTGGAGAACCATCCTCAGGGAGGTGAAGACCAGAGAGCTTCACCAAGACATCGAGATCCTCAGCCAGACCTTTGAACGCGTGGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
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| CDS GCA 90 bp | AAAGGCGATCTTCCGGTCCTCCGTGGCGTCGGTGTAATTCTTGAGTaGATCCTGGAACCTCCGCCACAGATCTTCCACTATGTTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: KGDLPVLRGVGVILE*ILEPPPQIFHYVLQ Trigger: CTGGAGAACATAGTGGAAGATCTGTGGCGGAGGTTCCAGGATGCACTCAAGAATTACACCGACGCCACGGAGGACCGGAAGATCGCCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS GCA 90 bp | ATCTCCCGCAGCTTGCTACTGATATCCAGCAGCTGCAGCCGCCTGTaGTGGAGACTCAGGACCTCCAGTTTCACCTTGTTGTATCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: ISRSLLLISSSCSRL*WRLRTSSFTLLYLF Trigger: GAAGAGATACAACAAGGTGAAACTGGAGGTCCTGAGTCTCCAGCACAGGCGGCTGCAGCTGCTGGATATCAGTAGCAAGCTGCGGGAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS CCA 90 bp | TCCATCATAATCTTGGCAAGGTCCTCTGTGATATCCTCCGGGTTCTaGAGCTTGGCCTCTTCCTGCTCCTCGGGAGTCAGCACTGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: SIIILARSSVISSGF*SLASSCSSGVSTEE Trigger: CTCTTCAGTGCTGACTCCCGAGGAGCAGGAAGAGGCCAAGCTCCAGAACCCGGAGGATATCACAGAGGACCTTGCCAAGATTATGATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTAGCATCTCCCGCAGCTaGCTACTGATATCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LSVCLSVPVHLSMRAKHASISRS*LLISSS Trigger: GCTGCTGGATATCAGTAGCAAGCTGCGGGAGATGCT...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS TCA 90 bp | ACTCAAAGGCGATCTTCCGGTCCTCCGTGGCGTCGGTGTAATTCTTaGGTGCATCCTGGAACCTCCGCCACAGATCTTCCACTATGTTCT | + |
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Preference number: 5 (lower is better) Translates to: TQRRSSGPPWRRCNS*VHPGTSATDLPLCS Trigger: AGAACATAGTGGAAGATCTGTGGCGGAGGTTCCAGGATGCACTCAAGAATTACACCGACGCCACGGAGGACCGGAAGATCGCCTTTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CAA 90 bp | CTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACACCTTCTTCAGGGCCTaGAGGGTGGCATTACTTTCC | + |
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Preference number: 5 (lower is better) Translates to: LSECACPSEHESKARWFHTFFRA*RVALLS Trigger: GGAAAGTAATGCCACCCTCAAGGCCCTGAAGAAGGT...GTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CAA 90 bp | CTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACCCATCCAAGTACTGTTaGAGCATCTCCCGCAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: LSECACPSEHESKARWFHPSKYC*SISRSL Trigger: CAAGCTGCGGGAGATGCTCAAACAGTACTTGGATGG...GTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS CCA 90 bp | CCCCTTCGCGGCTGTGGGCTACGATCTTCCCTTTCAGGATACCTATaGTCTCCTGCAGCTTCTGGATCTTTTTCATCTGCGTCTCAATCT | + |
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Preference number: 5 (lower is better) Translates to: PLRGCGLRSSLSGYL*SPAASGSFSSASQS Trigger: AGATTGAGACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGGAAGATCGTAGCCCACAGCCGCGAAGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTAGGTTTAGAGCGCTGTaGTGTTCTTCTTTGGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: LSVCLSVPVHLSMRAKHARFRAL*CSSLAN Trigger: GTTGGCCAAAGAAGAACACAACAGCGCTCTAAACCT...AGCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS-3UTR CAA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAATCCGGGTTCTGGAGCTaGGCCTCTTCCTGCTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: CPSEHESKARWFHKRKGKSGFWS*ASSCSS Trigger: CGAGGAGCAGGAAGAGGCCAAGCTCCAGAACCCGGA...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
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| CDS GCA 90 bp | CGGCTGTGGGCTACGATCTTCCCTTTCAGGATACCTATGGTCTCCTaGAGCTTCTGGATCTTTTTCATCTGCGTCTCAATCTCTTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: RLWATIFPFRIPMVS*SFWIFFICVSISLE Trigger: CTCCAAAGAGATTGAGACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGGAAGATCGTAGCCCACAGCCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | TCTGTCTGTCTGTCTGAGTGTGCCTGTCCATCTGAGCATGAGAGCAAAGCACGCTGCGTCTCAATCTCTTaGGAGCTTTTCTCATCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SVCLSECACPSEHESKARCVSIS*ELFSSF Trigger: GAAGGATGAGAAAAGCTCCAAAGAGATTGAGACGCA...GCGTGCTTTGCTCTCATGCTCAGATGGACAGGCACACTCAGACAGACAGACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | TTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCGAGCCAAGGAAGAGGTTTAGAGCGCTGTaGTGTTCTTCTTTGGCCAAC | + |
|
Preference number: 5 (lower is better) Translates to: LNHRNFKSGRWRHAEPRKRFRAL*CSSLAN Trigger: GTTGGCCAAAGAAGAACACAACAGCGCTCTAAACCT...CTTCCTTGGCTCGGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
||
| CDS-3UTR CAA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACTACGAAGAGCGGGTaGAGGTGGCTCAGCACTTCG | + |
|
Preference number: 5 (lower is better) Translates to: CPSEHESKARWFHKRKGKTTKSG*RWLSTS Trigger: CGAAGTGCTGAGCCACCTCAACCCGCTCTTCGTAGT...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS TCA 90 bp | GCTTGCTCTCATACTCGGAATCTATGTAGTTCTGCTCCATGGCCATaGAGACGTCCTGTAGGTAGTGCATCTCCTTCTCATGATGGTCAA | + |
|
Preference number: 5 (lower is better) Translates to: ACSHTRNLCSSAPWP*RRPVGSASPSHDGQ Trigger: TTGACCATCATGAGAAGGAGATGCACTACCTACAGGACGTCTTCATGGCCATGGAGCAGAACTACATAGATTCCGAGTATGAGAGCAAGC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS GCA 90 bp | CTTGTCCTTCAAGAACTGGGTGAGGAGTCTCTCTTTCTTCTTGGCTaGCTCTTCGTCAGCCAGCATCTTTTGCTGAAATATAAGCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LVLQELGEESLFLLG*LFVSQHLLLKYKQL Trigger: CAGCTGCTTATATTTCAGCAAAAGATGCTGGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGACTCCTCACCCAGTTCTTGAAGGACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS-3UTR CAA 90 bp | TTCTGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCGAGCCAGTCAGCCAGCATCTTTaGCTGAAATATAAGCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: FCLNHRNFKSGRWRHAEPVSQHL*LKYKQL Trigger: CAGCTGCTTATATTTCAGCAAAAGATGCTGGCTGAC...TGGCTCGGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
||
| CDS-3UTR CAA 90 bp | TTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGCCGAGCCAAGGAAGCTGTTGTGTTCTTCTTaGGCCAACTTGTCCTTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: LNHRNFKSGRWRHAEPRKLLCSS*ANLSFK Trigger: CTTGAAGGACAAGTTGGCCAAAGAAGAACACAACAG...CTTCCTTGGCTCGGCGTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
||
| CDS-3UTR CAA 90 bp | TGTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAGTCTCTCTTTCTTCTaGGCTGCCTCTTCGTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: CPSEHESKARWFHKRKGKSLSFF*AASSSA Trigger: GGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGACT...TTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | CACAGGCTTTATTTCTGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGAAGTCTCTCTTTCTTCTaGGCTGCCTCTTCGTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: HRLYFCLNHRNFKSGRWRSLSFF*AASSSA Trigger: GGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGACT...TCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCAGAAATAAAGCCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
||
| CDS CCA 90 bp | GCTACGATCTTCCCTTTCAGGATACCTATGGTCTCCTGCAGCTTCTaGATCTTTTTCATCTGCGTCTCAATCTCTTTGGAGCTTTTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: ATIFPFRIPMVSCSF*IFFICVSISLELFS Trigger: TGAGAAAAGCTCCAAAGAGATTGAGACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGGAAGATCGTAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAGAGGATCTCGATGTCTaGGTGAAGCTCTCTGGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKEDLDV*VKLSGL Trigger: AAGACCAGAGAGCTTCACCAAGACATCGAGATCCTC...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | AGGCTTTATTTCTGCTTAAACCACAGGAACTTTAAAAGTGGGAGGTGGAGACACGAGGATCTCGATGTCTaGGTGAAGCTCTCTGGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: RLYFCLNHRNFKSGRWRHEDLDV*VKLSGL Trigger: AAGACCAGAGAGCTTCACCAAGACATCGAGATCCTC...GTGTCTCCACCTCCCACTTTTAAAGTTCCTGTGGTTTAAGCAGAAATAAAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229471.2 |
||
| CDS-3UTR CAA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACTCTGGAACTCCAGCTaGCTCTCATACTCGGAATCT | + |
|
Preference number: 5 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKLWNSS*LSYSES Trigger: AGATTCCGAGTATGAGAGCAAGCTGGAGTTCCAGAG...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAATCTTCTTTGGCCAACTaGTCCTTCAAGAACTGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKSSLAN*SFKNWV Trigger: CACCCAGTTCTTGAAGGACAAGTTGGCCAAAGAAGA...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS GCA 90 bp | CGCCACAGATCTTCCACTATGTTCTCCAGTTGTAGGCGAAGAAAGTaGTTCTCTTCTAAATTCTTGTTTTTAAGGTCATCCCACATGCTC | + |
|
Preference number: 5 (lower is better) Translates to: RHRSSTMFSSCRRRK*FSSKFLFLRSSHML Trigger: GAGCATGTGGGATGACCTTAAAAACAAGAATTTAGAAGAGAAGCACTTTCTTCGCCTACAACTGGAGAACATAGTGGAAGATCTGTGGCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAAGTCAGCCAGCATCTTTaGCTGAAATATAAGCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKVSQHL*LKYKQL Trigger: CAGCTGCTTATATTTCAGCAAAAGATGCTGGCTGAC...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS-3UTR CAA 90 bp | GTCCATCTGAGCATGAGAGCAAAGCACGCTGGTTTCACAAAAGAAAAGGAAAAACTGTTGTGTTCTTCTTaGGCCAACTTGTCCTTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: VHLSMRAKHAGFTKEKEKLLCSS*ANLSFK Trigger: CTTGAAGGACAAGTTGGCCAAAGAAGAACACAACAG...TTTTTCCTTTTCTTTTGTGAAACCAGCGTGCTTTGCTCTCATGCTCAGATGGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CCA 72 bp | GCCGAGGGTGGGGGCAGCTGGGGTAGGTTGCTTCTGTaGTTTACTACGAAGAGCGGGTTGAGGTGGCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: AEGGGSWGRLLL*FTTKSGLRWLS Trigger: GCTGAGCCACCTCAACCCGCTCTTCGTAGTAAACCACAGAAGCAACCTACCCCAGCTGCCCCCACCCTCGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS TCA 72 bp | TGCACGTGGACCAGCTCCTTGTTATTCCGGATGCACTaGTTCTGCCATTCCCCTTCGCGGCTGTGGGCTACG | + |
|
Preference number: 6 (lower is better) Translates to: CTWTSSLLFRMH*FCHSPSRLWAT Trigger: CGTAGCCCACAGCCGCGAAGGGGAATGGCAGAATCAGTGCATCCGGAATAACAAGGAGCTGGTCCACGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS GCA 72 bp | GAAGCTGCACGTGGACCAGCTCCTTGTTATTCCGGATaGACTGATTCTGCCATTCCCCTTCGCGGCTGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: EAARGPAPCYSG*TDSAIPLRGCG Trigger: CCCACAGCCGCGAAGGGGAATGGCAGAATCAGTGCATCCGGAATAACAAGGAGCTGGTCCACGTGCAGCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 72 bp | GCAAGGTCCTCTGTGATATCCTCCGGGTTCTGGAGCTaGGCCTCTTCCTGCTCCTCGGGAGTCAGCACTGAA | + |
|
Preference number: 6 (lower is better) Translates to: ARSSVISSGFWS*ASSCSSGVSTE Trigger: TTCAGTGCTGACTCCCGAGGAGCAGGAAGAGGCCAAGCTCCAGAACCCGGAGGATATCACAGAGGACCTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 90 bp | CTCACGGAGATGCCATCCAAGTACTGTTTGAGCATCTCCCGCAGCTaGCTACTGATATCCAGCAGCTGCAGCCGCCTGTGCTGGAGACTC | + |
|
Preference number: 6 (lower is better) Translates to: LTEMPSKYCLSISRS*LLISSSCSRLCWRL Trigger: GAGTCTCCAGCACAGGCGGCTGCAGCTGCTGGATATCAGTAGCAAGCTGCGGGAGATGCTCAAACAGTACTTGGATGGCATCTCCGTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS TCA 72 bp | CGATCTTCCGGTCCTCCGTGGCGTCGGTGTAATTCTTaGGTGCATCCTGGAACCTCCGCCACAGATCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: RSSGPPWRRCNS*VHPGTSATDLP Trigger: TGGAAGATCTGTGGCGGAGGTTCCAGGATGCACTCAAGAATTACACCGACGCCACGGAGGACCGGAAGATCG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 90 bp | GAGCTCCATGTTGTAATTTTCCTCCAGGAGGCCGAGCCGGCGTCGTaGCAGGGTCAAGAGCTGGTCAATGTTGTGCAAGTGACTACGCAG | + |
|
Preference number: 6 (lower is better) Translates to: ELHVVIFLQEAEPAS*QGQELVNVVQVTTQ Trigger: CTGCGTAGTCACTTGCACAACATTGACCAGCTCTTGACCCTGCAACGACGCCGGCTCGGCCTCCTGGAGGAAAATTACAACATGGAGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS TCA 72 bp | CGTTGCAGGGTCAAGAGCTGGTCAATGTTGTGCAAGTaGCTACGCAGAGCGTGGGCATACTGCTCCTCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RCRVKSWSMLCK*LRRAWAYCSSA Trigger: AGCTGAGGAGCAGTATGCCCACGCTCTGCGTAGTCACTTGCACAACATTGACCAGCTCTTGACCCTGCAACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS GCA 72 bp | CTTCCGGTCCTCCGTGGCGTCGGTGTAATTCTTGAGTaGATCCTGGAACCTCCGCCACAGATCTTCCACTAT | + |
|
Preference number: 6 (lower is better) Translates to: LPVLRGVGVILE*ILEPPPQIFHY Trigger: ATAGTGGAAGATCTGTGGCGGAGGTTCCAGGATGCACTCAAGAATTACACCGACGCCACGGAGGACCGGAAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS GCA 72 bp | AGCTTGCTACTGATATCCAGCAGCTGCAGCCGCCTGTaGTGGAGACTCAGGACCTCCAGTTTCACCTTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: SLLLISSSCSRL*WRLRTSSFTLL Trigger: CAACAAGGTGAAACTGGAGGTCCTGAGTCTCCAGCACAGGCGGCTGCAGCTGCTGGATATCAGTAGCAAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 72 bp | GTTGTAATTTTCCTCCAGGAGGCCGAGCCGGCGTCGTaGCAGGGTCAAGAGCTGGTCAATGTTGTGCAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: VVIFLQEAEPAS*QGQELVNVVQV Trigger: CACTTGCACAACATTGACCAGCTCTTGACCCTGCAACGACGCCGGCTCGGCCTCCTGGAGGAAAATTACAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 72 bp | ATGCCATCCAAGTACTGTTTGAGCATCTCCCGCAGCTaGCTACTGATATCCAGCAGCTGCAGCCGCCTGTGC | + |
|
Preference number: 6 (lower is better) Translates to: MPSKYCLSISRS*LLISSSCSRLC Trigger: GCACAGGCGGCTGCAGCTGCTGGATATCAGTAGCAAGCTGCGGGAGATGCTCAAACAGTACTTGGATGGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 90 bp | ACAGTCCACCACGCGTTCAAAGGTCTGGCTGAGGATCTCGATGTCTaGGTGAAGCTCTCTGGTCTTCACCTCCCTGAGGATGGTTCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: TVHHAFKGLAEDLDV*VKLSGLHLPEDGSP Trigger: TGGAGAACCATCCTCAGGGAGGTGAAGACCAGAGAGCTTCACCAAGACATCGAGATCCTCAGCCAGACCTTTGAACGCGTGGTGGACTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS CAA 72 bp | CACGCGTTCAAAGGTCTGGCTGAGGATCTCGATGTCTaGGTGAAGCTCTCTGGTCTTCACCTCCCTGAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: HAFKGLAEDLDV*VKLSGLHLPED Trigger: ATCCTCAGGGAGGTGAAGACCAGAGAGCTTCACCAAGACATCGAGATCCTCAGCCAGACCTTTGAACGCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS TCA 72 bp | CGTTCAAAGGTCTGGCTGAGGATCTCGATGTCTTGGTaGAGCTCTCTGGTCTTCACCTCCCTGAGGATGGTT | + |
|
Preference number: 6 (lower is better) Translates to: RSKVWLRISMSW*SSLVFTSLRMV Trigger: AACCATCCTCAGGGAGGTGAAGACCAGAGAGCTTCACCAAGACATCGAGATCCTCAGCCAGACCTTTGAACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS TCA 72 bp | TGTCCTTACAGTCCACCACGCGTTCAAAGGTCTGGCTaGGGATCTCGATGTCTTGGTGAAGCTCTCTGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: CPYSPPRVQRSG*GSRCLGEALWS Trigger: AGACCAGAGAGCTTCACCAAGACATCGAGATCCTCAGCCAGACCTTTGAACGCGTGGTGGACTGTAAGGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS CCA 72 bp | TTGCTACTGATATCCAGCAGCTGCAGCCGCCTGTGCTaGAGACTCAGGACCTCCAGTTTCACCTTGTTGTAT | + |
|
Preference number: 6 (lower is better) Translates to: LLLISSSCSRLC*RLRTSSFTLLY Trigger: ATACAACAAGGTGAAACTGGAGGTCCTGAGTCTCCAGCACAGGCGGCTGCAGCTGCTGGATATCAGTAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 72 bp | TGCTCCTCAGCTTCAGTCAAGTCCTTAGCCAGAGACTaGATGACGCTGTCCTTACAGTCCACCACGCGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: CSSASVKSLARD*MTLSLQSTTRS Trigger: TGAACGCGTGGTGGACTGTAAGGACAGCGTCATCAAGTCTCTGGCTAAGGACTTGACTGAAGCTGAGGAGCA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 72 bp | ACTTCGTCGCTCACGGAGATGCCATCCAAGTACTGTTaGAGCATCTCCCGCAGCTTGCTACTGATATCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: TSSLTEMPSKYC*SISRSLLLISS Trigger: GCTGGATATCAGTAGCAAGCTGCGGGAGATGCTCAAACAGTACTTGGATGGCATCTCCGTGAGCGACGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CCA 72 bp | GGCTGTGGGCTACGATCTTCCCTTTCAGGATACCTATaGTCTCCTGCAGCTTCTGGATCTTTTTCATCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: GCGLRSSLSGYL*SPAASGSFSSA Trigger: CGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGGAAGATCGTAGCCCACAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 90 bp | GAGTCTCTCTTTCTTCTTGGCTGCCTCTTCGTCAGCCAGCATCTTTaGCTGAAATATAAGCAGCTGATCTTCCTCGGACAGGGGTGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: ESLFLLGCLFVSQHL*LKYKQLIFLGQGCL Trigger: AAGGCACCCCTGTCCGAGGAAGATCAGCTGCTTATATTTCAGCAAAAGATGCTGGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS TCA 72 bp | GTTCTTCTTTGGCCAACTTGTCCTTCAAGAACTGGGTaGGGAGTCTCTCTTTCTTCTTGGCTGCCTCTTCGT | + |
|
Preference number: 6 (lower is better) Translates to: VLLWPTCPSRTG*GVSLSSWLPLR Trigger: ACGAAGAGGCAGCCAAGAAGAAAGAGAGACTCCTCACCCAGTTCTTGAAGGACAAGTTGGCCAAAGAAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS TCA 72 bp | CATACTCGGAATCTATGTAGTTCTGCTCCATGGCCATaGAGACGTCCTGTAGGTAGTGCATCTCCTTCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: HTRNLCSSAPWP*RRPVGSASPSH Trigger: ATGAGAAGGAGATGCACTACCTACAGGACGTCTTCATGGCCATGGAGCAGAACTACATAGATTCCGAGTATG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS GCA 72 bp | CAAGAACTGGGTGAGGAGTCTCTCTTTCTTCTTGGCTaGCTCTTCGTCAGCCAGCATCTTTTGCTGAAATAT | + |
|
Preference number: 6 (lower is better) Translates to: QELGEESLFLLG*LFVSQHLLLKY Trigger: ATATTTCAGCAAAAGATGCTGGCTGACGAAGAGGCAGCCAAGAAGAAAGAGAGACTCCTCACCCAGTTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS GCA 72 bp | GCTACGATCTTCCCTTTCAGGATACCTATGGTCTCCTaGAGCTTCTGGATCTTTTTCATCTGCGTCTCAATC | + |
|
Preference number: 6 (lower is better) Translates to: ATIFPFRIPMVS*SFWIFFICVSI Trigger: GATTGAGACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGGAAGATCGTAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CCA 72 bp | TTGTGTTCTTCTTTGGCCAACTTGTCCTTCAAGAACTaGGTGAGGAGTCTCTCTTTCTTCTTGGCTGCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LCSSLANLSFKN*VRSLSFFLAAS Trigger: AGAGGCAGCCAAGAAGAAAGAGAGACTCCTCACCCAGTTCTTGAAGGACAAGTTGGCCAAAGAAGAACACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS CCA 72 bp | TTCCCTTTCAGGATACCTATGGTCTCCTGCAGCTTCTaGATCTTTTTCATCTGCGTCTCAATCTCTTTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: FPFRIPMVSCSF*IFFICVSISLE Trigger: CTCCAAAGAGATTGAGACGCAGATGAAAAAGATCCAGAAGCTGCAGGAGACCATAGGTATCCTGAAAGGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003444.6 |
||
| CDS CAA 90 bp | ATGGTTCTCCACTGCGTGTTAATCTTATTAAGGTTTAGAGCGCTGTaGTGTTCTTCTTTGGCCAACTTGTCCTTCAAGAACTGGGTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: MVLHCVLILLRFRAL*CSSLANLSFKNWVR Trigger: CCTCACCCAGTTCTTGAAGGACAAGTTGGCCAAAGAAGAACACAACAGCGCTCTAAACCTTAATAAGATTAACACGCAGTGGAGAACCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS CAA 72 bp | ATCTTATTAAGGTTTAGAGCGCTGTTGTGTTCTTCTTaGGCCAACTTGTCCTTCAAGAACTGGGTGAGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: ILLRFRALLCSS*ANLSFKNWVRS Trigger: ACTCCTCACCCAGTTCTTGAAGGACAAGTTGGCCAAAGAAGAACACAACAGCGCTCTAAACCTTAATAAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||
| CDS CAA 72 bp | CACTGCGTGTTAATCTTATTAAGGTTTAGAGCGCTGTaGTGTTCTTCTTTGGCCAACTTGTCCTTCAAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: HCVLILLRFRAL*CSSLANLSFKN Trigger: GTTCTTGAAGGACAAGTTGGCCAAAGAAGAACACAACAGCGCTCTAAACCTTAATAAGATTAACACGCAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003444.6 ENSMUST00000229471.2 |
||