RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC62 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061882

Ensembl transcript IDs: ENSMUST00000094320.10, ENSMUST00000165148.4

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGTTTGGACCCTGGCCTCTCCAAGGGCATTCTGGGCGCCTCGCTTaGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTGGCTCAGTAC +
Preference number: 1 (lower is better)
Translates to: QFGPWPLQGHSGRLA*LVQDQLCILSLAQY
Trigger: GTACTGAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCCCTTGGAGAGGCCAGGGTCCAAACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR GCA 90 bp CAAGGGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTaGATTCTTAGTCTGGCTCAGTACAACCAGTCTGAAGAGAAACCA +
Preference number: 1 (lower is better)
Translates to: QGHSGRLAWLVQDQL*ILSLAQYNQSEEKP
Trigger: TGGTTTCTCTTCAGACTGGTTGTACTGAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR GCA 90 bp GCTCAGTACAACCAGTCTGAAGAGAAACCAAGTATTTATAGAGTGTaGCAGCCTCACCCTCATTACAAACGTGAGCTCAACAGCCTCCCC +
Preference number: 1 (lower is better)
Translates to: AQYNQSEEKPSIYRV*QPHPHYKRELNSLP
Trigger: GGGGAGGCTGTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAATACTTGGTTTCTCTTCAGACTGGTTGTACTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 90 bp GGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTaGCTCAGTACAACCAGTCTGAAGAGAAACCAAGTATTTATAGAG +
Preference number: 1 (lower is better)
Translates to: GASLGWFRISSAFLV*LSTTSLKRNQVFIE
Trigger: CTCTATAAATACTTGGTTTCTCTTCAGACTGGTTGTACTGAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR TCA 90 bp ACTTATCTCATGTCTACCACTACAGCAAAGTCCAACACTAAAAGCTaGAGAGAAGAAAGACTGTGTCACGTACCGGAAGCTGGCTTTTGG +
Preference number: 1 (lower is better)
Translates to: TYLMSTTTAKSNTKS*REERLCHVPEAGFW
Trigger: CCAAAAGCCAGCTTCCGGTACGTGACACAGTCTTTCTTCTCTTCAGCTTTTAGTGTTGGACTTTGCTGTAGTGGTAGACATGAGATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 90 bp GATACTCCCAGGAAGCTGTTAAAAGGTTTCTGCATCTTGACAGCTTaGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTA +
Preference number: 1 (lower is better)
Translates to: DTPRKLLKGFCILTA*LLSFPFSVFLNAEV
Trigger: TACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAGCTTCCTGGGAGTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCGCTGGCGCACGCCTTTaGTCCCAGCCCTCAGGAGGC +
Preference number: 2 (lower is better)
Translates to: GILGASLGWFRISSAFLVAGARL*SQPSGG
Trigger: GCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGC...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp GTTTGTAAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCTCTGGGCGCCTCGCTTaGCTGGTTCAGGATCAGCTC +
Preference number: 2 (lower is better)
Translates to: VCKAGHGDIQVVDSCHPSSGRLA*LVQDQL
Trigger: GAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGA...GCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTTACAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp AAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCACCGGATCTGGATTCTCAGTTTaGACCCTGGCCTCTCCAAGG +
Preference number: 2 (lower is better)
Translates to: KAGHGDIQVVDSCHPSTGSGFSV*TLASPR
Trigger: CCTTGGAGAGGCCAGGGTCCAAACTGAGAATCCAGA...TCCGGTGCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp GTTTGTAAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCGGTACAGCTGTCTCCTaGGGACAGACAGCCTTAACT +
Preference number: 2 (lower is better)
Translates to: VCKAGHGDIQVVDSCHPSGTAVS*GQTALT
Trigger: AGTTAAGGCTGTCTGTCCTCAGGAGACAGCTGTACC...GCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTTACAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp TCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCAGGCGAGGCGCCTCGCTTGGCTaGTTCAGGATCAGCTCTGCA +
Preference number: 2 (lower is better)
Translates to: STLLFPMEHVIGVPVGRRGASLG*FRISSA
Trigger: TGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCC...TCGCCTGCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp CATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATAAGCTGCTTGTTAGCCTaGCAGTGCTGGCGCACGCCT +
Preference number: 2 (lower is better)
Translates to: HLGRKPEASNKGTLTHTISCLLA*QCWRTP
Trigger: AGGCGTGCGCCAGCACTGCCAGGCTAACAAGCAGCT...TATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR GCA 90 bp TGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCCTGTTAAAAGGTTTCTaGATCTTGACAGCTTGGCTT +
Preference number: 2 (lower is better)
Translates to: CWRTPLIPALRRQKQADFLLKGF*ILTAWL
Trigger: AAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAG...GAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp CCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCTGTGAGTTCGAGCCGGAAGCTGGCTTTTaGGAAATGGTGGTTATGATG +
Preference number: 2 (lower is better)
Translates to: PLIPALRRQKQADFCEFEPEAGF*EMVVMM
Trigger: CATCATAACCACCATTTCCCAAAAGCCAGCTTCCGG...CTCGAACTCACAGAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp CAGAGCCAGGCAAGGTACAGCTGTCTCCTGAGGACAGACAGCCTTAACTGCACAAAGGTTTCTGCATCTTaGCAGCTTGGCTTTTGTCTT +
Preference number: 2 (lower is better)
Translates to: QSQARYSCLLRTDSLNCTKVSAS*QLGFCL
Trigger: AAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTT...TGTGCAGTTAAGGCTGTCTGTCCTCAGGAGACAGCTGTACCTTGCCTGGCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR GCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTTGTTAGCCTGGCAGTaGTGGCGCACGCCTTTGATC +
Preference number: 2 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMLLAWQ*WRTPLI
Trigger: GATCAAAGGCGTGCGCCAGCACTGCCAGGCTAACAA...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp TATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTTGGAAATCACGTACCGGAAGCTaGCTTTTGGGAAATGGTGGT +
Preference number: 2 (lower is better)
Translates to: YRASSRTARATQRHPVWKSRTGS*LLGNGG
Trigger: ACCACCATTTCCCAAAAGCCAGCTTCCGGTACGTGA...TTTCCAAACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTCTCAGTTTGGACCCTaGCCTCTCCAAGGGCATTCT +
Preference number: 2 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMSQFGP*PLQGHS
Trigger: AGAATGCCCTTGGAGAGGCCAGGGTCCAAACTGAGA...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTCTGGATTCTCAGTTTaGACCCTGGCCTCTCCAAGG +
Preference number: 2 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMSGFSV*TLASPR
Trigger: CCTTGGAGAGGCCAGGGTCCAAACTGAGAATCCAGA...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp TCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCAGGCGAGGGAAATGGTGGTTATaGTGTGAATATGCACAGAGA +
Preference number: 2 (lower is better)
Translates to: STLLFPMEHVIGVPVGRRGKWWL*CEYAQR
Trigger: TCTCTGTGCATATTCACATCATAACCACCATTTCCC...TCGCCTGCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp TATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTTGGAAATTATCTTCAGGTGACTaGCTGTACTGTATCCACTCT +
Preference number: 2 (lower is better)
Translates to: YRASSRTARATQRHPVWKLSSGD*LYCIHS
Trigger: AGAGTGGATACAGTACAGTCAGTCACCTGAAGATAA...TTTCCAAACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp ATTTATAGAGTGTGCCAGCCTCACCCTCATTACAAACGTGAGCTCAACAGCCTCAATCCATATAAAACTTaGTCTTCCAGCAAGCGCTGT +
Preference number: 2 (lower is better)
Translates to: IYRVCQPHPHYKRELNSLNPYKT*SSSKRC
Trigger: ACAGCGCTTGCTGGAAGATCAAGTTTTATATGGATT...GAGGCTGTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR GCA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTACTGTATCCACTCTCTaGCTTCCAAAGACAATTCTG +
Preference number: 2 (lower is better)
Translates to: FVYRASSRTARATQRHPVTVSTL*LPKTIL
Trigger: CAGAATTGTCTTTGGAAGGCAGAGAGTGGATACAGT...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp CATGAAAATCATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCTGCATCTTGACAGCTTaGCTTTTGTCTTTCCCTTTC +
Preference number: 2 (lower is better)
Translates to: HENHLGRKPEASNKGTLTCILTA*LLSFPF
Trigger: GAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCA...GGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATGATTTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp CATGAAAATCATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCAATCCATATAAAACTTaGTCTTCCAGCAAGCGCTGT +
Preference number: 2 (lower is better)
Translates to: HENHLGRKPEASNKGTLTNPYKT*SSSKRC
Trigger: ACAGCGCTTGCTGGAAGATCAAGTTTTATATGGATT...GGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATGATTTTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CAA 90 bp CCCAGGAAGCTGTTAAAAGGTTTCTGCATCTTGACAGCTTGGCTTTaGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGTA +
Preference number: 2 (lower is better)
Translates to: PRKLLKGFCILTAWL*SFPFSVFLNAEVEV
Trigger: TACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAGCTTCCTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR GCA 90 bp GGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATACAACCTCTTTGTATTAAAGGCTaGTTTTGTGGGAATCACAGT +
Preference number: 2 (lower is better)
Translates to: GRKPEASNKGTLTHTIQPLCIKG*FCGNHS
Trigger: ACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAG...AGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp ACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAATTATCTTCAGGTGACTaGCTGTACTGTATCCACTCT +
Preference number: 2 (lower is better)
Translates to: TAWLLSFPFSVFLNAEVELSSGD*LYCIHS
Trigger: AGAGTGGATACAGTACAGTCAGTCACCTGAAGATAA...TTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR TCA 90 bp ACCACAAGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTAAGGTTTCTGCATCTTaGCAGCTTGGCTTTTGTCTT +
Preference number: 2 (lower is better)
Translates to: TTSLSQPGIYRCYRYFKPKVSAS*QLGFCL
Trigger: AAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTT...AGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACTTGTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR GCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGCTGTTAAAAGGTTTCTaGATCTTGACAGCTTGGCTT +
Preference number: 2 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMLLKGF*ILTAWL
Trigger: AAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAG...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR GCA 90 bp AAAGGTTTCTGCATCTTGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTTTGTATTAAAGGCTaGTTTTGTGGGAATCACAGT +
Preference number: 2 (lower is better)
Translates to: KGFCILTAWLLSFPFSVFLCIKG*FCGNHS
Trigger: ACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAG...AAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CCA 90 bp AGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTATGAAAACCATGAAAATCATCTaGGAAGAAAGCCTGAAGCCT +
Preference number: 2 (lower is better)
Translates to: SLSQPGIYRCYRYFKPMKTMKII*EESLKP
Trigger: AGGCTTCAGGCTTTCTTCCCAGATGATTTTCATGGT...TTTCATAGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 72 bp AGGCTGCGTTCAAGCTGCTTGTTAGCCTGGCAGTGCTaGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: RLRSSCLLAWQC*RTPLIPALRRQ
Trigger: CTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCACTGCCAGGCTAACAAGCAGCTTGAACGCAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 72 bp GGCCTCTCCAAGGGCATTCTGGGCGCCTCGCTTGGCTaGTTCAGGATCAGCTCTGCATTCTTAGTCTGGCTC +
Preference number: 3 (lower is better)
Translates to: GLSKGILGASLG*FRISSAFLVWL
Trigger: GAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCCCTTGGAGAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 72 bp CCCTGGCCTCTCCAAGGGCATTCTGGGCGCCTCGCTTaGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTG +
Preference number: 3 (lower is better)
Translates to: PWPLQGHSGRLA*LVQDQLCILSL
Trigger: CAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCCCTTGGAGAGGCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCCTGCGTTCAAGCTGCTaGTTAGCCTGGCAGTGCTGG +
Preference number: 3 (lower is better)
Translates to: GILGASLGWFRISSAFLVLRSSC*LAWQCW
Trigger: CCAGCACTGCCAGGCTAACAAGCAGCTTGAACGCAG...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR GCA 72 bp CTTAGGAGACAGTCACCTACCAGGCTGCGTTCAAGCTaGTTGTTAGCCTGGCAGTGCTGGCGCACGCCTTTG +
Preference number: 3 (lower is better)
Translates to: LRRQSPTRLRSS*LLAWQCWRTPL
Trigger: CAAAGGCGTGCGCCAGCACTGCCAGGCTAACAAGCAGCTTGAACGCAGCCTGGTAGGTGACTGTCTCCTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR GCA 72 bp TCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTaGATTCTTAGTCTGGCTCAGTACAACCAGTCTGAA +
Preference number: 3 (lower is better)
Translates to: SGRLAWLVQDQL*ILSLAQYNQSE
Trigger: TTCAGACTGGTTGTACTGAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp GTTTGTAAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCATCTGGATTCTCAGTTaGGACCCTGGCCTCTCCAAG +
Preference number: 3 (lower is better)
Translates to: VCKAGHGDIQVVDSCHPSIWILS*DPGLSK
Trigger: CTTGGAGAGGCCAGGGTCCAAACTGAGAATCCAGAT...GCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTTACAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 72 bp CTGTTCTACCCTGCTTTTTCCAATGGAGCATGTAATTaGTGTTCCTGTTGGCAGGCGAGTGGAGGAGCAGCC +
Preference number: 3 (lower is better)
Translates to: LFYPAFSNGACN*CSCWQASGGAA
Trigger: GGCTGCTCCTCCACTCGCCTGCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGAACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCGCCTTCCAAAGACAATaGCATAGCCTCAGTGAATGT +
Preference number: 3 (lower is better)
Translates to: GILGASLGWFRISSAFLVAFQRQ*HSLSEC
Trigger: ACATTCACTGAGGCTATGCAATTGTCTTTGGAAGGC...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094320.10
3UTR-3UTR CAA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTTGACAGCTTGGCTTTaGTCTTTCCCTTTCAGCGTA +
Preference number: 3 (lower is better)
Translates to: GILGASLGWFRISSAFLVLTAWL*SFPFSV
Trigger: TACGCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAA...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp TGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCAAAGGTTTCTGCATCTaGACAGCTTGGCTTTTGTCT +
Preference number: 3 (lower is better)
Translates to: CWRTPLIPALRRQKQADFKGFCI*TAWLLS
Trigger: AGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTT...GAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 72 bp CAGAGTAGGAAAAGTTTACTATCTGGATTCTCAGTTTaGACCCTGGCCTCTCCAAGGGCATTCTGGGCGCCT +
Preference number: 3 (lower is better)
Translates to: QSRKSLLSGFSV*TLASPRAFWAP
Trigger: AGGCGCCCAGAATGCCCTTGGAGAGGCCAGGGTCCAAACTGAGAATCCAGATAGTAAACTTTTCCTACTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp GTTTGTAAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCCTGCATCTTGACAGCTaGGCTTTTGTCTTTCCCTTT +
Preference number: 3 (lower is better)
Translates to: VCKAGHGDIQVVDSCHPSLHLDS*AFVFPF
Trigger: AAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAG...GCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTTACAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR TCA 72 bp AAACTTGATCTTCCAGCAAGCGCTGTCCTGTGTAAGTaGACTGTCTACTACAGAGCCAGGCAAGGTACAGCT +
Preference number: 3 (lower is better)
Translates to: KLDLPASAVLCK*TVYYRARQGTA
Trigger: AGCTGTACCTTGCCTGGCTCTGTAGTAGACAGTTCACTTACACAGGACAGCGCTTGCTGGAAGATCAAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp ATTTATAGAGTGTGCCAGCCTCACCCTCATTACAAACGTGAGCTCAACAGCCTCACCGGAAGCTGGCTTTaGGGAAATGGTGGTTATGAT +
Preference number: 3 (lower is better)
Translates to: IYRVCQPHPHYKRELNSLTGSWL*GNGGYD
Trigger: ATCATAACCACCATTTCCCAAAAGCCAGCTTCCGGT...GAGGCTGTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp ATTTATAGAGTGTGCCAGCCTCACCCTCATTACAAACGTGAGCTCAACAGCCTCCTGCATCTTGACAGCTaGGCTTTTGTCTTTCCCTTT +
Preference number: 3 (lower is better)
Translates to: IYRVCQPHPHYKRELNSLLHLDS*AFVFPF
Trigger: AAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAG...GAGGCTGTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR GCA 72 bp AACCAGTCTGAAGAGAAACCAAGTATTTATAGAGTGTaGCAGCCTCACCCTCATTACAAACGTGAGCTCAAC +
Preference number: 3 (lower is better)
Translates to: NQSEEKPSIYRV*QPHPHYKRELN
Trigger: GTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAATACTTGGTTTCTCTTCAGACTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CCA 72 bp CTGAAGAGAAGAAAGACTGTGTCACGTACCGGAAGCTaGCTTTTGGGAAATGGTGGTTATGATGTGAATATG +
Preference number: 3 (lower is better)
Translates to: LKRRKTVSRTGS*LLGNGGYDVNM
Trigger: CATATTCACATCATAACCACCATTTCCCAAAAGCCAGCTTCCGGTACGTGACACAGTCTTTCTTCTCTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR-3UTR CAA 90 bp TATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTTGGAAACAAAGACAATTCTGTTaGCATAGCCTCAGTGAATGT +
Preference number: 3 (lower is better)
Translates to: YRASSRTARATQRHPVWKQRQFC*HSLSEC
Trigger: ACATTCACTGAGGCTATGCAAACAGAATTGTCTTTG...TTTCCAAACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165148.4
3UTR TCA 72 bp GCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTaGAGTAGAAGTAGGGCCTCAGTTTTTAGGCATGAA +
Preference number: 3 (lower is better)
Translates to: AFVFPFQRISKR*SRSRASVFRHE
Trigger: TTCATGCCTAAAAACTGAGGCCCTACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CAA 72 bp AGCTGCTTGTTAGCCTGGCAGTGCTGGCGCACGCCTTaGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGAT +
Preference number: 4 (lower is better)
Translates to: SCLLAWQCWRTP*IPALRRQKQAD
Trigger: ATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCACTGCCAGGCTAACAAGCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTGGCTCGTCTGGCACTCTGCTTaGTTGGACTCCAGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: LGASLGWFRISSAFLVWLVWHSA*LDSRVL
Trigger: CAAGACCCTGGAGTCCAATCAAGCAGAGTGCCAGAC...GAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TGGCAGTGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCATTGATGTCATGCCACTaGTTCTCGTCAGACAGCGAG +
Preference number: 4 (lower is better)
Translates to: WQCWRTPLIPALRRQKQALMSCH*FSSDSE
Trigger: CTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAA...TGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCACTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CAA 72 bp AGGAGACAGTCACCTACCAGGCTGCGTTCAAGCTGCTaGTTAGCCTGGCAGTGCTGGCGCACGCCTTTGATC +
Preference number: 4 (lower is better)
Translates to: RRQSPTRLRSSC*LAWQCWRTPLI
Trigger: GATCAAAGGCGTGCGCCAGCACTGCCAGGCTAACAAGCAGCTTGAACGCAGCCTGGTAGGTGACTGTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTGGCTCCTGCGACCATGTCATTaGGCTCCTTATCGCGGTCTT +
Preference number: 4 (lower is better)
Translates to: LGASLGWFRISSAFLVWLLRPCH*APYRGL
Trigger: AAGACCGCGATAAGGAGCTCAATGACATGGTCGCAG...GAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CAGAGCCAGGCAAGGTACAGCTGTCTCCTGAGGACAGACAGCCTTAACTGCACAGGAAGTCTCAACTTCTaGTCCGATGTTCTGGCGCCG +
Preference number: 4 (lower is better)
Translates to: QSQARYSCLLRTDSLNCTGSLNF*SDVLAP
Trigger: CGGCGCCAGAACATCGGATCAGAAGTTGAGACTTCC...TGTGCAGTTAAGGCTGTCTGTCCTCAGGAGACAGCTGTACCTTGCCTGGCTCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCGCTGTTTTGAGCAGCTaGAAAGGCCCAGGTAGACGT +
Preference number: 4 (lower is better)
Translates to: GILGASLGWFRISSAFLVAVLSS*KGPGRR
Trigger: ACGTCTACCTGGGCCTTTCCAGCTGCTCAAAACAGC...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp AAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCACCGGAACAAGAGCTCTTGTCTaGCCCATTGTGCTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: KAGHGDIQVVDSCHPSTGTRALV*PIVLSQ
Trigger: TTGGCTCAGCACAATGGGTCAGACAAGAGCTCTTGT...TCCGGTGCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTTGATGTCATGCCACTaGTTCTCGTCAGACAGCGAG +
Preference number: 4 (lower is better)
Translates to: GILGASLGWFRISSAFLVLMSCH*FSSDSE
Trigger: CTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAA...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCATGATGTTACTTGGGTaGCAGCACTTGGACTCGGAC +
Preference number: 4 (lower is better)
Translates to: GILGASLGWFRISSAFLVMMLLG*QHLDSD
Trigger: GTCCGAGTCCAAGTGCTGCCACCCAAGTAACATCAT...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTGCTCACCTTCGAGCTTaGTGCAGCGCTCCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: FVYRASSRTARATQRHPVAHLRA*CSAPPG
Trigger: CCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGC...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTACTACAGAGCCAGGCAAGGTACAGCTGTCTCCTGAGGACAGACAGCCTTAACTGCAATTGTCCTACCTaGGCAGAGAGGTCCACTAAC +
Preference number: 4 (lower is better)
Translates to: LLQSQARYSCLLRTDSLNCNCPT*AERSTN
Trigger: GTTAGTGGACCTCTCTGCTCAGGTAGGACAATTGCA...GTTAAGGCTGTCTGTCCTCAGGAGACAGCTGTACCTTGCCTGGCTCTGTAGTAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCTGTGAGTTCGAGAGACTACATTTGGGGTaGAGCAGGAGACCTCAGATG +
Preference number: 4 (lower is better)
Translates to: PLIPALRRQKQADFCEFERLHLG*SRRPQM
Trigger: CATCTGAGGTCTCCTGCTGCACCCCAAATGTAGTCT...CTCGAACTCACAGAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp TGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCATCTGTCTCAGATTCTaGAGCTCGGAATTTGTACGA +
Preference number: 4 (lower is better)
Translates to: CWRTPLIPALRRQKQADFICLRF*SSEFVR
Trigger: TCGTACAAATTCCGAGCTCCAGAATCTGAGACAGAT...GAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp GGCATTCTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCAGCTTTTCTCTTGCTTaGGTCGAATTATCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: GILGASLGWFRISSAFLVSFSLA*VELSPL
Trigger: GAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCT...GACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAGAATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp TGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCTATATTTCATTGCGCTaGCACTTCTTGAACAAGTGC +
Preference number: 4 (lower is better)
Translates to: CWRTPLIPALRRQKQADFYISLR*HFLNKC
Trigger: GCACTTGTTCAAGAAGTGTCAGCGCAATGAAATATA...GAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp GGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATACAACCTGTCAGGAAGGGCCGCTaGCTCCTCTTCTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: GRKPEASNKGTLTHTIQPVRKGR*LLFSFS
Trigger: GCTGAAAGAGAAGAGGAGTCAGCGGCCCTTCCTGAC...AGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CCAAGTATTTATAGAGTGTGCCAGCCTCACCCTCATTACAAACGTGAGCTCAACGTCAGGAAGGGCCGCTaGCTCCTCTTCTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: PSIYRVCQPHPHYKRELNVRKGR*LLFSFS
Trigger: GCTGAAAGAGAAGAGGAGTCAGCGGCCCTTCCTGAC...GTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAATACTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTAGGGTCAGCACTTTCTaGCGGTCCTCTTCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: FVYRASSRTARATQRHPVRVSTF*RSSSQE
Trigger: CTCCTGGGAAGAGGACCGGCAGAAAGTGCTGACCCT...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CATGAAAATCATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCAGGGTCAGCACTTTCTaGCGGTCCTCTTCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HENHLGRKPEASNKGTLTRVSTF*RSSSQE
Trigger: CTCCTGGGAAGAGGACCGGCAGAAAGTGCTGACCCT...GGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATGATTTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CATGAAAATCATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCGGAAGTCTCAACTTCTaGTCCGATGTTCTGGCGCCG +
Preference number: 4 (lower is better)
Translates to: HENHLGRKPEASNKGTLTGSLNF*SDVLAP
Trigger: CGGCGCCAGAACATCGGATCAGAAGTTGAGACTTCC...GGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATGATTTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGGAGTGTGTGGCCTTCTaGGCCATCTCCTGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMECVAF*AISWSC
Trigger: GCAGCTCCAGGAGATGGCTCAGAAGGCCACACACTC...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTCAGGTGTCGCCGAAGGGTTCATaGATGACTCCCCCGCCCCCA +
Preference number: 4 (lower is better)
Translates to: VLKAAFVGITVLFTYLQVSPKGS*MTPPPP
Trigger: TGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGA...CACCTGAAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp ACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAATCGCCGAAGGGTTCATaGATGACTCCCCCGCCCCCA +
Preference number: 4 (lower is better)
Translates to: TAWLLSFPFSVFLNAEVESPKGS*MTPPPP
Trigger: TGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGA...TTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp ATTTATAGAGTGTGCCAGCCTCACCCTCATTACAAACGTGAGCTCAACAGCCTCAGACTACATTTGGGGTaGAGCAGGAGACCTCAGATG +
Preference number: 4 (lower is better)
Translates to: IYRVCQPHPHYKRELNSLRLHLG*SRRPQM
Trigger: CATCTGAGGTCTCCTGCTGCACCCCAAATGTAGTCT...GAGGCTGTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATACAACCTACGTCTCCGCCATCTTaGCATCACGTAAAGCGTGCT +
Preference number: 4 (lower is better)
Translates to: GRKPEASNKGTLTHTIQPTSPPS*HHVKRA
Trigger: AGCACGCTTTACGTGATGCCAAGATGGCGGAGACGT...AGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CAA 72 bp CTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATaGACCCATACAATACAACCTTCATCGGCAGTGCTT +
Preference number: 4 (lower is better)
Translates to: LGRKPEASNKGT*THTIQPSSAVL
Trigger: AAGCACTGCCGATGAAGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp TATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTTGGAAATGGACTCCAGGGTCTTaGCCTTCTTCATCAGTGACT +
Preference number: 4 (lower is better)
Translates to: YRASSRTARATQRHPVWKWTPGS*PSSSVT
Trigger: AGTCACTGATGAAGAAGGTCAAGACCCTGGAGTCCA...TTTCCAAACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp TATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTTGGAAATCTGACCCATTGTGCTaGGCCAACATGACCTCAAAC +
Preference number: 4 (lower is better)
Translates to: YRASSRTARATQRHPVWKSDPLC*ANMTSN
Trigger: GTTTGAGGTCATGTTGGCTCAGCACAATGGGTCAGA...TTTCCAAACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp GGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATACAACCTACAAGAGCTCTTGTCTaGCCCATTGTGCTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: GRKPEASNKGTLTHTIQPTRALV*PIVLSQ
Trigger: TTGGCTCAGCACAATGGGTCAGACAAGAGCTCTTGT...AGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCTGTGAGTTCGAGAGACAGCTTTTCTCTTaGTTGAGTCGAATTATCTCC +
Preference number: 4 (lower is better)
Translates to: PLIPALRRQKQADFCEFERQLFS*LSRIIS
Trigger: GGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCT...CTCGAACTCACAGAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTACACACTGGGAAGGCTaGATGCCAATGAGCTCACTT +
Preference number: 4 (lower is better)
Translates to: FVYRASSRTARATQRHPVTHWEG*MPMSSL
Trigger: AAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGT...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTCAGGTGCTTCCGAGAGGAGGGTaGAGTGTGTGGCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: VLKAAFVGITVLFTYLQVLPRGG*SVWPSE
Trigger: CTCAGAAGGCCACACACTCCACCCTCCTCTCGGAAG...CACCTGAAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp ACCACAAGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTCTTCCGAGAGGAGGGTaGAGTGTGTGGCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: TTSLSQPGIYRCYRYFKPLPRGG*SVWPSE
Trigger: CTCAGAAGGCCACACACTCCACCCTCCTCTCGGAAG...AGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACTTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGGCTGTTTTGAGCAGCTaGAAAGGCCCAGGTAGACGT +
Preference number: 4 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMAVLSS*KGPGRR
Trigger: ACGTCTACCTGGGCCTTTCCAGCTGCTCAAAACAGC...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp ATGAGCCCATCAGACAGAGTAGGAAAAGTTTACTATCTGGATTCTCAGTTTGGACTGCGACCATGTCATTaGGCTCCTTATCGCGGTCTT +
Preference number: 4 (lower is better)
Translates to: MSPSDRVGKVYYLDSQFGLRPCH*APYRGL
Trigger: AAGACCGCGATAAGGAGCTCAATGACATGGTCGCAG...TCCAAACTGAGAATCCAGATAGTAAACTTTTCCTACTCTGTCTGATGGGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTGTTAAAAGGTTTCTGCATCTTGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCTGGACTCCAGGGTCTTaGCCTTCTTCATCAGTGACT +
Preference number: 4 (lower is better)
Translates to: LLKGFCILTAWLLSFPFSWTPGS*PSSSVT
Trigger: AGTCACTGATGAAGAAGGTCAAGACCCTGGAGTCCA...GCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp GCCTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTGTCTGGCACTCTGCTTaGTTGGACTCCAGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: AFVLKAAFVGITVLFTYLVWHSA*LDSRVL
Trigger: CAAGACCCTGGAGTCCAATCAAGCAGAGTGCCAGAC...AAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTGCAATTGTCCTACCTaGGCAGAGAGGTCCACTAAC +
Preference number: 4 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMCNCPT*AERSTN
Trigger: GTTAGTGGACCTCTCTGCTCAGGTAGGACAATTGCA...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTGTTAAAAGGTTTCTGCATCTTGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCTCTGACCCATTGTGCTaGGCCAACATGACCTCAAAC +
Preference number: 4 (lower is better)
Translates to: LLKGFCILTAWLLSFPFSSDPLC*ANMTSN
Trigger: GTTTGAGGTCATGTTGGCTCAGCACAATGGGTCAGA...GCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CATGAAAATCATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCGTGCTCTGGAAGGCTTaGAAATATTCATCCACTCTG +
Preference number: 4 (lower is better)
Translates to: HENHLGRKPEASNKGTLTVLWKA*KYSSTL
Trigger: CAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCAC...GGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATGATTTTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp GGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATACAACCTTGCGCTGACACTTCTTaGACAAGTGCACATGGTTTT +
Preference number: 4 (lower is better)
Translates to: GRKPEASNKGTLTHTIQPCADTS*TSAHGF
Trigger: AAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGCA...AGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp AAAGGTTTCTGCATCTTGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTGCCTCTGATGCACTaGGACCATGTCATTGAGCTC +
Preference number: 4 (lower is better)
Translates to: KGFCILTAWLLSFPFSVFLPLMH*DHVIEL
Trigger: GAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAG...AAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CCTTGCCTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTACTGCCTCTGATGCACTaGGACCATGTCATTGAGCTC +
Preference number: 4 (lower is better)
Translates to: PCLCIKGCFCGNHSPLYLLPLMH*DHVIEL
Trigger: GAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAG...TAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAGGCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCAGGCGACACTTCTTGAACAAGTaGACATGGTTTTGTGGCGAA +
Preference number: 4 (lower is better)
Translates to: STLLFPMEHVIGVPVGRRHFLNK*TWFCGE
Trigger: TTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTG...TCGCCTGCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTGACCTTCTTCATCAGTaGCTTGATTATGTCAGTCCT +
Preference number: 4 (lower is better)
Translates to: FVYRASSRTARATQRHPVDLLHQ*LDYVSP
Trigger: AGGACTGACATAATCAAGTCACTGATGAAGAAGGTC...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CTGTTAAAAGGTTTCTGCATCTTGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCATAAACACATGTCCTTaGTGCACTCCAGGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: LLKGFCILTAWLLSFPFSINTCP*CTPGPL
Trigger: CAAAGGCCCTGGAGTGCAGCAAGGACATGTGTTTAT...GCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CCAAGTATTTATAGAGTGTGCCAGCCTCACCCTCATTACAAACGTGAGCTCAACGCGAACAATCCTTTGTaGTCTGGAAGGCTTGAAAAT +
Preference number: 4 (lower is better)
Translates to: PSIYRVCQPHPHYKRELNANNPL*SGRLEN
Trigger: ATTTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGC...GTTGAGCTCACGTTTGTAATGAGGGTGAGGCTGGCACACTCTATAAATACTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CCTTGCCTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTAACACACTGGGAAGGCTaGATGCCAATGAGCTCACTT +
Preference number: 4 (lower is better)
Translates to: PCLCIKGCFCGNHSPLYLTHWEG*MPMSSL
Trigger: AAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGT...TAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAGGCAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATACAACCTATCTGTCTCAGATTCTaGAGCTCGGAATTTGTACGA +
Preference number: 4 (lower is better)
Translates to: GRKPEASNKGTLTHTIQPICLRF*SSEFVR
Trigger: TCGTACAAATTCCGAGCTCCAGAATCTGAGACAGAT...AGGTTGTATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CAA 72 bp GATACTCCCAGGAAGCTGTTAAAAGGTTTCTGCATCTaGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTA +
Preference number: 4 (lower is better)
Translates to: DTPRKLLKGFCI*TAWLLSFPFSV
Trigger: TACGCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAGCTTCCTGGGAGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
3UTR CAA 72 bp AGAAGAAAGACTGTGTCACGTACCGGAAGCTGGCTTTaGGGAAATGGTGGTTATGATGTGAATATGCACAGA +
Preference number: 4 (lower is better)
Translates to: RRKTVSRTGSWL*GNGGYDVNMHR
Trigger: TCTGTGCATATTCACATCATAACCACCATTTCCCAAAAGCCAGCTTCCGGTACGTGACACAGTCTTTCTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp TGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGTAGGGTGCGCTGACACTTCTTaGACAAGTGCACATGGTTTT +
Preference number: 4 (lower is better)
Translates to: WLLSFPFSVFLNAEVEVGCADTS*TSAHGF
Trigger: AAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGCA...CCCTACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCAGACAGCTTTTCTCTTaGTTGAGTCGAATTATCTCC +
Preference number: 4 (lower is better)
Translates to: SCSTLLFPMEHVIGVPVGRQLFS*LSRIIS
Trigger: GGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCT...GCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGAACAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp ATGAGCCCATCAGACAGAGTAGGAAAAGTTTACTATCTGGATTCTCAGTTTGGAATAAACACATGTCCTTaGTGCACTCCAGGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: MSPSDRVGKVYYLDSQFGINTCP*CTPGPL
Trigger: CAAAGGCCCTGGAGTGCAGCAAGGACATGTGTTTAT...TCCAAACTGAGAATCCAGATAGTAAACTTTTCCTACTCTGTCTGATGGGCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGTAGGGGTAGCTTCTTCTCTCTaGAAGCATCACAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: WLLSFPFSVFLNAEVEVGVASSL*KHHKSS
Trigger: AGAGCTCTTGTGATGCTTGCAGAGAGAAGAAGCTAC...CCCTACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGGTAGCTTCTTCTCTCTaGAAGCATCACAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMVASSL*KHHKSS
Trigger: AGAGCTCTTGTGATGCTTGCAGAGAGAAGAAGCTAC...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp GCCTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTATGATGTTACTTGGGTaGCAGCACTTGGACTCGGAC +
Preference number: 4 (lower is better)
Translates to: AFVLKAAFVGITVLFTYLMMLLG*QHLDSD
Trigger: GTCCGAGTCCAAGTGCTGCCACCCAAGTAACATCAT...AAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp ATGAGCCCATCAGACAGAGTAGGAAAAGTTTACTATCTGGATTCTCAGTTTGGAGATGATGATGTTACTTaGGTGGCAGCACTTGGACTC +
Preference number: 4 (lower is better)
Translates to: MSPSDRVGKVYYLDSQFGDDDVT*VAALGL
Trigger: GAGTCCAAGTGCTGCCACCCAAGTAACATCATCATC...TCCAAACTGAGAATCCAGATAGTAAACTTTTCCTACTCTGTCTGATGGGCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp TGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGTAGGGAGCTTTTCTCTTGCTTaGGTCGAATTATCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: WLLSFPFSVFLNAEVEVGSFSLA*VELSPL
Trigger: GAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCT...CCCTACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp ACCACAAGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTATCCTTTTCATTGGCTaGGGTTCTTCTGTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: TTSLSQPGIYRCYRYFKPILFIG*GSSVRK
Trigger: CTTCCTGACAGAAGAACCTCAGCCAATGAAAAGGAT...AGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACTTGTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp TCTCTGCCTTCCAAAGACAATTCTGTTTGCATAGCCTCAGTGAATGTCCAAGTTGCGAACAATCCTTTGTaGTCTGGAAGGCTTGAAAAT +
Preference number: 4 (lower is better)
Translates to: SLPSKDNSVCIASVNVQVANNPL*SGRLEN
Trigger: ATTTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGC...AACTTGGACATTCACTGAGGCTATGCAAACAGAATTGTCTTTGGAAGGCAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165148.4
CDS-3UTR GCA 90 bp CTGTTAAAAGGTTTCTGCATCTTGACAGCTTGGCTTTTGTCTTTCCCTTTCAGCCACTTCTTGAACAAGTaGACATGGTTTTGTGGCGAA +
Preference number: 4 (lower is better)
Translates to: LLKGFCILTAWLLSFPFSHFLNK*TWFCGE
Trigger: TTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTG...GCTGAAAGGGAAAGACAAAAGCCAAGCTGTCAAGATGCAGAAACCTTTTAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTTTTGGGAAATGGTGGTTATGATGTGAATATGCACAGAGACTGTAAGGATAAGGTGCTCTGGAAGGCTTaGAAATATTCATCCACTCTG +
Preference number: 4 (lower is better)
Translates to: LLGNGGYDVNMHRDCKDKVLWKA*KYSSTL
Trigger: CAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCAC...CTTATCCTTACAGTCTCTGTGCATATTCACATCATAACCACCATTTCCCAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CCA 90 bp CTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTCAGATGATGATGTTACTTaGGTGGCAGCACTTGGACTC +
Preference number: 4 (lower is better)
Translates to: LCIKGCFCGNHSPLYLSSDDDVT*VAALGL
Trigger: GAGTCCAAGTGCTGCCACCCAAGTAACATCATCATC...TGAAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp ACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAATATATTTCATTGCGCTaGCACTTCTTGAACAAGTGC +
Preference number: 4 (lower is better)
Translates to: TAWLLSFPFSVFLNAEVEYISLR*HFLNKC
Trigger: GCACTTGTTCAAGAAGTGTCAGCGCAATGAAATATA...TTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR TCA 90 bp CTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTCAATCCTTTTCATTGGCTaGGGTTCTTCTGTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: LCIKGCFCGNHSPLYLSSILFIG*GSSVRK
Trigger: CTTCCTGACAGAAGAACCTCAGCCAATGAAAAGGAT...TGAAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 90 bp CAGCTGATGGGTAGCAGCGTGCTCAGCTCCAGATCCGTGACCATCTaGCGGGACTCGGCCAGCAGCCGCTGGAGCTTACTCGTAGGAGAG +
Preference number: 5 (lower is better)
Translates to: QLMGSSVLSSRSVTI*RDSASSRWSLLVGE
Trigger: CTCTCCTACGAGTAAGCTCCAGCGGCTGCTGGCCGAGTCCCGGCAGATGGTCACGGATCTGGAGCTGAGCACGCTGCTACCCATCAGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 90 bp CTGATCCGATGTTCTGGCGCCGGTATAAGGTCGCCGAAGGGTTCATaGATGACTCCCCCGCCCCCAGAGAGAGTTGGTGCCAGCAGCGGG +
Preference number: 5 (lower is better)
Translates to: LIRCSGAGIRSPKGS*MTPPPPERVGASSG
Trigger: CCCGCTGCTGGCACCAACTCTCTCTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCTTATACCGGCGCCAGAACATCGGATCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp GTTTGTAAGGCTGGGCATGGTGACATACAGGTGGTAGACTCCTGTCATCCCAGCCGCCCCCAGAGAGAGTaGGTGCCAGCAGCGGGTCAC +
Preference number: 5 (lower is better)
Translates to: VCKAGHGDIQVVDSCHPSRPQRE*VPAAGH
Trigger: GTGACCCGCTGCTGGCACCAACTCTCTCTGGGGGCG...GCTGGGATGACAGGAGTCTACCACCTGTATGTCACCATGCCCAGCCTTACAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TGGCAGTGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCATGTCTGGCACTCTGCTaGATTGGACTCCAGGGTCTT +
Preference number: 5 (lower is better)
Translates to: WQCWRTPLIPALRRQKQACLALC*IGLQGL
Trigger: AAGACCCTGGAGTCCAATCAAGCAGAGTGCCAGACA...TGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCACTGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CTGGGCGCCTCGCTTGGCTGGTTCAGGATCAGCTCTGCATTCTTAGTCTGGCTCCACGTCTCCGCCATCTaGGCATCACGTAAAGCGTGC +
Preference number: 5 (lower is better)
Translates to: LGASLGWFRISSAFLVWLHVSAI*ASRKAC
Trigger: GCACGCTTTACGTGATGCCAAGATGGCGGAGACGTG...GAGCCAGACTAAGAATGCAGAGCTGATCCTGAACCAGCCAAGCGAGGCGCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 90 bp TTTCTGCCGGTCCTCTTCCCAGGAGAGAAGCTGCCTCTGATGCACTaGGACCATGTCATTGAGCTCCTTATCGCGGTCTTTCAGCTCCCC +
Preference number: 5 (lower is better)
Translates to: FLPVLFPGEKLPLMH*DHVIELLIAVFQLP
Trigger: GGGGAGCTGAAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAGCTTCTCTCCTGGGAAGAGGACCGGCAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 90 bp TGCCACTGCTTCTCGTCAGACAGCGAGACGGAGGTTTCCGAGAGCTaGTTCTCTTCCGTTGGAAGCCCCACTCCATCGCATTTTGGTGAC +
Preference number: 5 (lower is better)
Translates to: CHCFSSDSETEVSES*FSSVGSPTPSHFGD
Trigger: GTCACCAAAATGCGATGGAGTGGGGCTTCCAACGGAAGAGAAGCAGCTCTCGGAAACCTCCGTCTCGCTGTCTGACGAGAAGCAGTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp GTCAGCACTTTCTGCCGGTCCTCTTCCCAGGAGAGAAGCTGCCTCTaGTGCACTGCGACCATGTCATTGAGCTCCTTATCGCGGTCTTTC +
Preference number: 5 (lower is better)
Translates to: VSTFCRSSSQERSCL*CTATMSLSSLSRSF
Trigger: GAAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAGCTTCTCTCCTGGGAAGAGGACCGGCAGAAAGTGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp GCCTGTCTGGCTGTTTTGAGCAGCTGGAAAGGCCCAGGTAGACGTTaGTGTCATGCCACTGCTTCTCGTCAGACAGCGAGACGGAGGTTT +
Preference number: 5 (lower is better)
Translates to: ACLAVLSSWKGPGRR*CHATASRQTARRRF
Trigger: AAACCTCCGTCTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAACGTCTACCTGGGCCTTTCCAGCTGCTCAAAACAGCCAGACAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 90 bp TGGACTCGGACAGGTCATTGTCACCTATACAGACTACATTTGGGGTaGAGCAGGAGACCTCAGATGTTCCTGTGCGGTCGTGGCCATCCC +
Preference number: 5 (lower is better)
Translates to: WTRTGHCHLYRLHLG*SRRPQMFLCGRGHP
Trigger: GGGATGGCCACGACCGCACAGGAACATCTGAGGTCTCCTGCTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 90 bp GCACTTGGACTCGGACAGGTCATTGTCACCTATACAGACTACATTTaGGGTGCAGCAGGAGACCTCAGATGTTCCTGTGCGGTCGTGGCC +
Preference number: 5 (lower is better)
Translates to: ALGLGQVIVTYTDYI*GAAGDLRCSCAVVA
Trigger: GGCCACGACCGCACAGGAACATCTGAGGTCTCCTGCTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TGCTGGCGCACGCCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCGATAAACACATGTCCTaGCTGCACTCCAGGGCCTTT +
Preference number: 5 (lower is better)
Translates to: CWRTPLIPALRRQKQADFDKHMS*LHSRAF
Trigger: AAAGGCCCTGGAGTGCAGCAAGGACATGTGTTTATC...GAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGGCGTGCGCCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 90 bp CGCTGCTTCTCAATAGTGGAAGTCTCAACTTCTGATCCGATGTTCTaGCGCCGGTATAAGGTCGCCGAAGGGTTCATGGATGACTCCCCC +
Preference number: 5 (lower is better)
Translates to: RCFSIVEVSTSDPMF*RRYKVAEGFMDDSP
Trigger: GGGGGAGTCATCCATGAACCCTTCGGCGACCTTATACCGGCGCCAGAACATCGGATCAGAAGTTGAGACTTCCACTATTGAGAAGCAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGCGCCCCCAGAGAGAGTaGGTGCCAGCAGCGGGTCAC +
Preference number: 5 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMRPQRE*VPAAGH
Trigger: GTGACCCGCTGCTGGCACCAACTCTCTCTGGGGGCG...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 90 bp GTCTTGACCTTCTTCATCAGTGACTTGATTATGTCAGTCCTTTTATaGAGCTCACCTTCGAGCTTGCTGCAGCGCTCCTCCAGGGTCAGC +
Preference number: 5 (lower is better)
Translates to: VLTFFISDLIMSVLL*SSPSSLLQRSSRVS
Trigger: GCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGCATAAAAGGACTGACATAATCAAGTCACTGATGAAGAAGGTCAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTCACGTCTCCGCCATCTaGGCATCACGTAAAGCGTGC +
Preference number: 5 (lower is better)
Translates to: FVYRASSRTARATQRHPVHVSAI*ASRKAC
Trigger: GCACGCTTTACGTGATGCCAAGATGGCGGAGACGTG...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp TCATTGAGCTCCTTATCGCGGTCTTTCAGCTCCCCGATGAGCAGCTaGAGTTCCTTCCGCTGCTTCTCAATAGTGGAAGTCTCAACTTCT +
Preference number: 5 (lower is better)
Translates to: SLSSLSRSFSSPMSS*SSFRCFSIVEVSTS
Trigger: AGAAGTTGAGACTTCCACTATTGAGAAGCAGCGGAAGGAACTTCAGCTGCTCATCGGGGAGCTGAAAGACCGCGATAAGGAGCTCAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCAGGCGACTCTCTAGCTTGCAATaGTCCTACCTGAGCAGAGAG +
Preference number: 5 (lower is better)
Translates to: STLLFPMEHVIGVPVGRRLSSLQ*SYLSRE
Trigger: CTCTCTGCTCAGGTAGGACAATTGCAAGCTAGAGAG...TCGCCTGCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCAGGCGAGATAAACACATGTCCTaGCTGCACTCCAGGGCCTTT +
Preference number: 5 (lower is better)
Translates to: STLLFPMEHVIGVPVGRRDKHMS*LHSRAF
Trigger: AAAGGCCCTGGAGTGCAGCAAGGACATGTGTTTATC...TCGCCTGCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CATGAAAATCATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCTTGGACTCCAGGGTCTaGACCTTCTTCATCAGTGAC +
Preference number: 5 (lower is better)
Translates to: HENHLGRKPEASNKGTLTLDSRV*TFFISD
Trigger: GTCACTGATGAAGAAGGTCAAGACCCTGGAGTCCAA...GGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATGATTTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CCTTTGATCCCAGCCCTCAGGAGGCAGAAGCAAGCAGATTTCTGTGAGTTCGAGTCCTCTCGTTGTTCATaGTTTTCTGTTGTCTTCTCA +
Preference number: 5 (lower is better)
Translates to: PLIPALRRQKQADFCEFESSRCS*FSVVFS
Trigger: TGAGAAGACAACAGAAAACAATGAACAACGAGAGGA...CTCGAACTCACAGAAATCTGCTTGCTTCTGCCTCCTGAGGGCTGGGATCAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CTACTACAGAGCCAGGCAAGGTACAGCTGTCTCCTGAGGACAGACAGCCTTAACTCTGAGACTTCTAATTaGCTTCTGTTGAGATTCTCG +
Preference number: 5 (lower is better)
Translates to: LLQSQARYSCLLRTDSLNSETSN*LLLRFS
Trigger: CGAGAATCTCAACAGAAGCAAATTAGAAGTCTCAGA...GTTAAGGCTGTCTGTCCTCAGGAGACAGCTGTACCTTGCCTGGCTCTGTAGTAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp ATCATGGTAGTGAGAGCCTGCTCTCTAGCTTGCAATTGTCCTACCTaGGCAGAGAGGTCCACTAACGTGCTGCTGAGATTTTCATTTCTA +
Preference number: 5 (lower is better)
Translates to: IMVVRACSLACNCPT*AERSTNVLLRFSFL
Trigger: TAGAAATGAAAATCTCAGCAGCACGTTAGTGGACCTCTCTGCTCAGGTAGGACAATTGCAAGCTAGAGAGCAGGCTCTCACTACCATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 90 bp GGAAGGCTTGAAAATATTCATCCACTCTGTATCAGTCATATGTCCTaGGGCTTCGATGATGATGTTACTTGGGTGGCAGCACTTGGACTC +
Preference number: 5 (lower is better)
Translates to: GRLENIHPLCISHMS*GFDDDVTWVAALGL
Trigger: GAGTCCAAGTGCTGCCACCCAAGTAACATCATCATCGAAGCCCCAGGACATATGACTGATACAGAGTGGATGAATATTTTCAAGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 90 bp TCTTCTCTTTCAGCAGACTTTAAGGAACCCACACACTGGGAAGGCTaGATGCCAATGAGCTCACTTGCTGAGGAATTATATTTCATTGCG +
Preference number: 5 (lower is better)
Translates to: SSLSADFKEPTHWEG*MPMSSLAEELYFIA
Trigger: CGCAATGAAATATAATTCCTCAGCAAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGTGGGTTCCTTAAAGTCTGCTGAAAGAGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCTGTGCTCTGGAAGGCTaGAAAATATTCATCCACTCT +
Preference number: 5 (lower is better)
Translates to: SCSTLLFPMEHVIGVPVGCALEG*KIFIHS
Trigger: AGAGTGGATGAATATTTTCAAGCCTTCCAGAGCACA...GCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGAACAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TTTGTCTATAGAGCTAGTTCCAGGACAGCCAGAGCTACACAAAGACACCCTGTTTCTAATTTGCTTCTGTaGAGATTCTCGCAGCTGATG +
Preference number: 5 (lower is better)
Translates to: FVYRASSRTARATQRHPVSNLLL*RFSQLM
Trigger: CATCAGCTGCGAGAATCTCAACAGAAGCAAATTAGA...AACAGGGTGTCTTTGTGTAGCTCTGGCTGTCCTGGAACTAGCTCTATAGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGTAATTGGTGTTCCTGTTGGCTCTAATTTGCTTCTGTaGAGATTCTCGCAGCTGATG +
Preference number: 5 (lower is better)
Translates to: SCSTLLFPMEHVIGVPVGSNLLL*RFSQLM
Trigger: CATCAGCTGCGAGAATCTCAACAGAAGCAAATTAGA...GCCAACAGGAACACCAATTACATGCTCCATTGGAAAAAGCAGGGTAGAACAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CTTTTGGGAAATGGTGGTTATGATGTGAATATGCACAGAGACTGTAAGGATAAGTTGGACTCCAGGGTCTaGACCTTCTTCATCAGTGAC +
Preference number: 5 (lower is better)
Translates to: LLGNGGYDVNMHRDCKDKLDSRV*TFFISD
Trigger: GTCACTGATGAAGAAGGTCAAGACCCTGGAGTCCAA...CTTATCCTTACAGTCTCTGTGCATATTCACATCATAACCACCATTTCCCAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGTAGGGTCTGGAGCTCGGAATTaGTACGATCTTGCTTTGACT +
Preference number: 5 (lower is better)
Translates to: WLLSFPFSVFLNAEVEVGSGARN*YDLALT
Trigger: AGTCAAAGCAAGATCGTACAAATTCCGAGCTCCAGA...CCCTACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TCTCTGCCTTCCAAAGACAATTCTGTTTGCATAGCCTCAGTGAATGTCCAAGTTTTGCATAGGGTAACTTaGTTTTCCGGTTCAGTCTGG +
Preference number: 5 (lower is better)
Translates to: SLPSKDNSVCIASVNVQVLHRVT*FSGSVW
Trigger: CCAGACTGAACCGGAAAACAAAGTTACCCTATGCAA...AACTTGGACATTCACTGAGGCTATGCAAACAGAATTGTCTTTGGAAGGCAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp AGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTATGAAACTCTCTAGCTTGCAATaGTCCTACCTGAGCAGAGAG +
Preference number: 5 (lower is better)
Translates to: SLSQPGIYRCYRYFKPMKLSSLQ*SYLSRE
Trigger: CTCTCTGCTCAGGTAGGACAATTGCAAGCTAGAGAG...TTTCATAGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CATCTGGGAAGAAAGCCTGAAGCCTCGAACAAAGGGACATTGACCCATACAATAGCCTCAATAATGTCTTaGTCCTTTAGCTTTATCATG +
Preference number: 5 (lower is better)
Translates to: HLGRKPEASNKGTLTHTIASIMS*SFSFIM
Trigger: CATGATAAAGCTAAAGGACAAAGACATTATTGAGGC...TATTGTATGGGTCAATGTCCCTTTGTTCGAGGCTTCAGGCTTTCTTCCCAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp GTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTCAGGTGTTGCATAGGGTAACTTaGTTTTCCGGTTCAGTCTGG +
Preference number: 5 (lower is better)
Translates to: VLKAAFVGITVLFTYLQVLHRVT*FSGSVW
Trigger: CCAGACTGAACCGGAAAACAAAGTTACCCTATGCAA...CACCTGAAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGAAGTCATCCTTTTCATaGGCTGAGGTTCTTCTGTCA +
Preference number: 5 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMKSSFS*AEVLLS
Trigger: TGACAGAAGAACCTCAGCCAATGAAAAGGATGACTT...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 90 bp TATTTCATTGCGCTGACACTTCTTGAACAAGTGCACATGGTTTTGTaGCGAACAATCCTTTGTGCTCTGGAAGGCTTGAAAATATTCATC +
Preference number: 5 (lower is better)
Translates to: YFIALTLLEQVHMVL*RTILCALEGLKIFI
Trigger: GATGAATATTTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGCAATGAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp GCCTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTTCTGGAGCTCGGAATTaGTACGATCTTGCTTTGACT +
Preference number: 5 (lower is better)
Translates to: AFVLKAAFVGITVLFTYLSGARN*YDLALT
Trigger: AGTCAAAGCAAGATCGTACAAATTCCGAGCTCCAGA...AAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp ATAAAACAGTGGATTTCCGATCCTGTTCTACCCTGCTTTTTCCAATGGAGCATGGACCAAGACTTTTGTTaGTCCAGTAAGTCTTTGGTA +
Preference number: 5 (lower is better)
Translates to: IKQWISDPVLPCFFQWSMDQDFC*SSKSLV
Trigger: TACCAAAGACTTACTGGACAAACAAAAGTCTTGGTC...CATGCTCCATTGGAAAAAGCAGGGTAGAACAGGATCGGAAATCCACTGTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp TGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGTAGGGTCTGAGACTTCTAATTaGCTTCTGTTGAGATTCTCG +
Preference number: 5 (lower is better)
Translates to: WLLSFPFSVFLNAEVEVGSETSN*LLLRFS
Trigger: CGAGAATCTCAACAGAAGCAAATTAGAAGTCTCAGA...CCCTACTTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp ACAGCTTGGCTTTTGTCTTTCCCTTTCAGCGTATTTCTAAACGCTGAAGTAGAAGCCTCAATAATGTCTTaGTCCTTTAGCTTTATCATG +
Preference number: 5 (lower is better)
Translates to: TAWLLSFPFSVFLNAEVEASIMS*SFSFIM
Trigger: CATGATAAAGCTAAAGGACAAAGACATTATTGAGGC...TTCTACTTCAGCGTTTAGAAATACGCTGAAAGGGAAAGACAAAAGCCAAGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp GCCTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTTCCTCTCGTTGTTCATaGTTTTCTGTTGTCTTCTCA +
Preference number: 5 (lower is better)
Translates to: AFVLKAAFVGITVLFTYLSSRCS*FSVVFS
Trigger: TGAGAAGACAACAGAAAACAATGAACAACGAGAGGA...AAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp AGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTATGAAATGTGCTCTGGAAGGCTaGAAAATATTCATCCACTCT +
Preference number: 5 (lower is better)
Translates to: SLSQPGIYRCYRYFKPMKCALEG*KIFIHS
Trigger: AGAGTGGATGAATATTTTCAAGCCTTCCAGAGCACA...TTTCATAGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp AGTTTGAGCCAGCCTGGAATATATAGGTGCTATAGATATTTCAAGCCTATGAAAAAGTCATCCTTTTCATaGGCTGAGGTTCTTCTGTCA +
Preference number: 5 (lower is better)
Translates to: SLSQPGIYRCYRYFKPMKKSSFS*AEVLLS
Trigger: TGACAGAAGAACCTCAGCCAATGAAAAGGATGACTT...TTTCATAGGCTTGAAATATCTATAGCACCTATATATTCCAGGCTGGCTCAAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp AAAGCGTGCTCTAACAATTTAAATTTACCCGAGCAGTCTGAAATGTaGTTGACGGCCTCAATAATGTCTTTGTCCTTTAGCTTTATCATG +
Preference number: 5 (lower is better)
Translates to: KACSNNLNLPEQSEM*LTASIMSLSFSFIM
Trigger: CATGATAAAGCTAAAGGACAAAGACATTATTGAGGCCGTCAATCACATTTCAGACTGCTCGGGTAAATTTAAATTGTTAGAGCACGCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS-3UTR CAA 90 bp CTTTGTATTAAAGGCTGCTTTTGTGGGAATCACAGTCCTCTTTACTTATCTTCAGACCAAGACTTTTGTTaGTCCAGTAAGTCTTTGGTA +
Preference number: 5 (lower is better)
Translates to: LCIKGCFCGNHSPLYLSSDQDFC*SSKSLV
Trigger: TACCAAAGACTTACTGGACAAACAAAAGTCTTGGTC...TGAAGATAAGTAAAGAGGACTGTGATTCCCACAAAAGCAGCCTTTAATACAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp GCCTTTGGTTCCTCCATCTTTAAGCCATGTATTTGTATTAATTCCTaGGAACTTTCTATATTGAAATTAAGAAACTGCAGGTCACTCTGC +
Preference number: 5 (lower is better)
Translates to: AFGSSIFKPCICINS*ELSILKLRNCRSLC
Trigger: GCAGAGTGACCTGCAGTTTCTTAATTTCAATATAGAAAGTTCTCAGGAATTAATACAAATACATGGCTTAAAGATGGAGGAACCAAAGGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 90 bp ATTGTGCTGAGCCAACATGACCTCAAACGTTTGATCTTTAACCAATaGCTTCTGATTTCTCTCTCTTTTAATATCGATTTTTGGGTAGTT +
Preference number: 5 (lower is better)
Translates to: IVLSQHDLKRLIFNQ*LLISLSFNIDFWVV
Trigger: AACTACCCAAAAATCGATATTAAAAGAGAGAGAAATCAGAAGTCATTGGTTAAAGATCAAACGTTTGAGGTCATGTTGGCTCAGCACAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp GGTAGCAGCGTGCTCAGCTCCAGATCCGTGACCATCTaGCGGGACTCGGCCAGCAGCCGCTGGAGCTTACTC +
Preference number: 6 (lower is better)
Translates to: GSSVLSSRSVTI*RDSASSRWSLL
Trigger: GAGTAAGCTCCAGCGGCTGCTGGCCGAGTCCCGGCAGATGGTCACGGATCTGGAGCTGAGCACGCTGCTACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp CATTTGGGGTGCAGCAGGAGACCTCAGATGTTCCTGTaGGGTCGTGGCCATCCCCGTCCAGCCTGTCTGGCT +
Preference number: 6 (lower is better)
Translates to: HLGCSRRPQMFL*GRGHPRPACLA
Trigger: AGCCAGACAGGCTGGACGGGGATGGCCACGACCGCACAGGAACATCTGAGGTCTCCTGCTGCACCCCAAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 72 bp TGTTCTGGCGCCGGTATAAGGTCGCCGAAGGGTTCATaGATGACTCCCCCGCCCCCAGAGAGAGTTGGTGCC +
Preference number: 6 (lower is better)
Translates to: CSGAGIRSPKGS*MTPPPPERVGA
Trigger: GGCACCAACTCTCTCTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCTTATACCGGCGCCAGAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 72 bp GTGCAGCAGGAGACCTCAGATGTTCCTGTGCGGTCGTaGCCATCCCCGTCCAGCCTGTCTGGCTGTTTTGAG +
Preference number: 6 (lower is better)
Translates to: VQQETSDVPVRS*PSPSSLSGCFE
Trigger: CTCAAAACAGCCAGACAGGCTGGACGGGGATGGCCACGACCGCACAGGAACATCTGAGGTCTCCTGCTGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp TGTCAGTCCTTTTATGCAGCTCACCTTCGAGCTTGCTaGAGCGCTCCTCCAGGGTCAGCACTTTCTGCCGGT +
Preference number: 6 (lower is better)
Translates to: CQSFYAAHLRAC*SAPPGSALSAG
Trigger: ACCGGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGCATAAAAGGACTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp GCGAGACGGAGGTTTCCGAGAGCTGCTTCTCTTCCGTaGGAAGCCCCACTCCATCGCATTTTGGTGACTTTG +
Preference number: 6 (lower is better)
Translates to: ARRRFPRAASLP*EAPLHRILVTL
Trigger: CAAAGTCACCAAAATGCGATGGAGTGGGGCTTCCAACGGAAGAGAAGCAGCTCTCGGAAACCTCCGTCTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp AGCACTTGGACTCGGACAGGTCATTGTCACCTATACAGACTACATTaGGGGTGCAGCAGGAGACCTCAGATGTTCCTGTGCGGTCGTGGC +
Preference number: 6 (lower is better)
Translates to: STWTRTGHCHLYRLH*GCSRRPQMFLCGRG
Trigger: GCCACGACCGCACAGGAACATCTGAGGTCTCCTGCTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 72 bp GCTGTTTTGAGCAGCTGGAAAGGCCCAGGTAGACGTTaGTGTCATGCCACTGCTTCTCGTCAGACAGCGAGA +
Preference number: 6 (lower is better)
Translates to: AVLSSWKGPGRR*CHATASRQTAR
Trigger: TCTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAACGTCTACCTGGGCCTTTCCAGCTGCTCAAAACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp GTCCTCTTCCCAGGAGAGAAGCTGCCTCTGATGCACTaGGACCATGTCATTGAGCTCCTTATCGCGGTCTTT +
Preference number: 6 (lower is better)
Translates to: VLFPGEKLPLMH*DHVIELLIAVF
Trigger: AAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAGCTTCTCTCCTGGGAAGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp TTATGTCAGTCCTTTTATGCAGCTCACCTTCGAGCTTaGTGCAGCGCTCCTCCAGGGTCAGCACTTTCTGCC +
Preference number: 6 (lower is better)
Translates to: LCQSFYAAHLRA*CSAPPGSALSA
Trigger: GGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGCATAAAAGGACTGACATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp AGTGACTTGATTATGTCAGTCCTTTTATGCAGCTCACCTTCGAGCTaGCTGCAGCGCTCCTCCAGGGTCAGCACTTTCTGCCGGTCCTCT +
Preference number: 6 (lower is better)
Translates to: SDLIMSVLLCSSPSS*LQRSSRVSTFCRSS
Trigger: AGAGGACCGGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGCATAAAAGGACTGACATAATCAAGTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp AGCAGCCGCTGGAGCTTACTCGTAGGAGAGAAGTCATCCTTTTCATaGGCTGAGGTTCTTCTGTCAGGAAGGGCCGCTGACTCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: SSRWSLLVGEKSSFS*AEVLLSGRAADSSS
Trigger: AGAAGAGGAGTCAGCGGCCCTTCCTGACAGAAGAACCTCAGCCAATGAAAAGGATGACTTCTCTCCTACGAGTAAGCTCCAGCGGCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp CTGCTGCTGCGTCTTCTGAAGAGCTGTCTGGCACTCTaGTTGATTGGACTCCAGGGTCTTGACCTTCTTCAT +
Preference number: 6 (lower is better)
Translates to: LLLRLLKSCLAL*LIGLQGLDLLH
Trigger: ATGAAGAAGGTCAAGACCCTGGAGTCCAATCAAGCAGAGTGCCAGACAGCTCTTCAGAAGACGCAGCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp CTGCTGCGTCTTCTGAAGAGCTGTCTGGCACTCTGCTaGATTGGACTCCAGGGTCTTGACCTTCTTCATCAG +
Preference number: 6 (lower is better)
Translates to: LLRLLKSCLALC*IGLQGLDLLHQ
Trigger: CTGATGAAGAAGGTCAAGACCCTGGAGTCCAATCAAGCAGAGTGCCAGACAGCTCTTCAGAAGACGCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 72 bp GTGAGAGCCTGCTCTCTAGCTTGCAATTGTCCTACCTaGGCAGAGAGGTCCACTAACGTGCTGCTGAGATTT +
Preference number: 6 (lower is better)
Translates to: VRACSLACNCPT*AERSTNVLLRF
Trigger: AAATCTCAGCAGCACGTTAGTGGACCTCTCTGCTCAGGTAGGACAATTGCAAGCTAGAGAGCAGGCTCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 72 bp AGTCATATGTCCTGGGGCTTCGATGATGATGTTACTTaGGTGGCAGCACTTGGACTCGGACAGGTCATTGTC +
Preference number: 6 (lower is better)
Translates to: SHMSWGFDDDVT*VAALGLGQVIV
Trigger: GACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAAGTAACATCATCATCGAAGCCCCAGGACATATGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp ACTCGGACAGGTCATTGTCACCTATACAGACTACATTaGGGGTGCAGCAGGAGACCTCAGATGTTCCTGTGC +
Preference number: 6 (lower is better)
Translates to: TRTGHCHLYRLH*GCSRRPQMFLC
Trigger: GCACAGGAACATCTGAGGTCTCCTGCTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp TTACTTGGGTGGCAGCACTTGGACTCGGACAGGTCATaGTCACCTATACAGACTACATTTGGGGTGCAGCAG +
Preference number: 6 (lower is better)
Translates to: LLGWQHLDSDRS*SPIQTTFGVQQ
Trigger: CTGCTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp GGGGCTTCGATGATGATGTTACTTGGGTGGCAGCACTaGGACTCGGACAGGTCATTGTCACCTATACAGACT +
Preference number: 6 (lower is better)
Translates to: GASMMMLLGWQH*DSDRSLSPIQT
Trigger: AGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAAGTAACATCATCATCGAAGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp ATGATGATGTTACTTGGGTGGCAGCACTTGGACTCGGACAGGTCATaGTCACCTATACAGACTACATTTGGGGTGCAGCAGGAGACCTCA +
Preference number: 6 (lower is better)
Translates to: MMMLLGWQHLDSDRS*SPIQTTFGVQQETS
Trigger: TGAGGTCTCCTGCTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAAGTAACATCATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 72 bp TCAATAGTGGAAGTCTCAACTTCTGATCCGATGTTCTaGCGCCGGTATAAGGTCGCCGAAGGGTTCATGGAT +
Preference number: 6 (lower is better)
Translates to: SIVEVSTSDPMF*RRYKVAEGFMD
Trigger: ATCCATGAACCCTTCGGCGACCTTATACCGGCGCCAGAACATCGGATCAGAAGTTGAGACTTCCACTATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp ATATGTCCTGGGGCTTCGATGATGATGTTACTTGGGTGGCAGCACTaGGACTCGGACAGGTCATTGTCACCTATACAGACTACATTTGGG +
Preference number: 6 (lower is better)
Translates to: ICPGASMMMLLGWQH*DSDRSLSPIQTTFG
Trigger: CCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAAGTAACATCATCATCGAAGCCCCAGGACATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 72 bp CTTCTTCTCTCTGCAAGCATCACAAGAGCTCTTGTCTaGCCCATTGTGCTGAGCCAACATGACCTCAAACGT +
Preference number: 6 (lower is better)
Translates to: LLLSASITRALV*PIVLSQHDLKR
Trigger: ACGTTTGAGGTCATGTTGGCTCAGCACAATGGGTCAGACAAGAGCTCTTGTGATGCTTGCAGAGAGAAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp TTCTTCATCAGTGACTTGATTATGTCAGTCCTTTTATaGAGCTCACCTTCGAGCTTGCTGCAGCGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: FFISDLIMSVLL*SSPSSLLQRSS
Trigger: GGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGCATAAAAGGACTGACATAATCAAGTCACTGATGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp TCAGCAGACTTTAAGGAACCCACACACTGGGAAGGCTaGATGCCAATGAGCTCACTTGCTGAGGAATTATAT +
Preference number: 6 (lower is better)
Translates to: SADFKEPTHWEG*MPMSSLAEELY
Trigger: ATATAATTCCTCAGCAAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGTGGGTTCCTTAAAGTCTGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 72 bp GCGCTGACACTTCTTGAACAAGTGCACATGGTTTTGTaGCGAACAATCCTTTGTGCTCTGGAAGGCTTGAAA +
Preference number: 6 (lower is better)
Translates to: ALTLLEQVHMVL*RTILCALEGLK
Trigger: TTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp ATTGCGCTGACACTTCTTGAACAAGTGCACATGGTTTaGTGGCGAACAATCCTTTGTGCTCTGGAAGGCTTG +
Preference number: 6 (lower is better)
Translates to: IALTLLEQVHMV*WRTILCALEGL
Trigger: CAAGCCTTCCAGAGCACAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp TTGGACTCCAGGGTCTTGACCTTCTTCATCAGTGACTaGATTATGTCAGTCCTTTTATGCAGCTCACCTTCG +
Preference number: 6 (lower is better)
Translates to: LDSRVLTFFISD*IMSVLLCSSPS
Trigger: CGAAGGTGAGCTGCATAAAAGGACTGACATAATCAAGTCACTGATGAAGAAGGTCAAGACCCTGGAGTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp TTTGGTGACTTTGCATGGACCTTGCATAGGGTAACTTaGTTTTCCGGTTCAGTCTGGATTTTCCCACCCAGA +
Preference number: 6 (lower is better)
Translates to: FGDFAWTLHRVT*FSGSVWIFPPR
Trigger: TCTGGGTGGGAAAATCCAGACTGAACCGGAAAACAAAGTTACCCTATGCAAGGTCCATGCAAAGTCACCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CCA 72 bp GAAAATATTCATCCACTCTGTATCAGTCATATGTCCTaGGGCTTCGATGATGATGTTACTTGGGTGGCAGCA +
Preference number: 6 (lower is better)
Translates to: ENIHPLCISHMS*GFDDDVTWVAA
Trigger: TGCTGCCACCCAAGTAACATCATCATCGAAGCCCCAGGACATATGACTGATACAGAGTGGATGAATATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp TCTTGCTTTTCTCTCACCACACACGTCTCCGCCATCTaGGCATCACGTAAAGCGTGCTCTAACAATTTAAAT +
Preference number: 6 (lower is better)
Translates to: SCFSLTTHVSAI*ASRKACSNNLN
Trigger: ATTTAAATTGTTAGAGCACGCTTTACGTGATGCCAAGATGGCGGAGACGTGTGTGGTGAGAGAAAAGCAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp ACAAGTGCACATGGTTTTGTGGCGAACAATCCTTTGTaGTCTGGAAGGCTTGAAAATATTCATCCACTCTGT +
Preference number: 6 (lower is better)
Translates to: TSAHGFVANNPL*SGRLENIHPLC
Trigger: ACAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGCCACAAAACCATGTGCACTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp TTTATTGACTTCAATCCTAAGTGCCTTCAATTTCTGCTTATAATCTaGCTTTTCTCTCACCACACACGTCTCCGCCATCTTGGCATCACG +
Preference number: 6 (lower is better)
Translates to: FIDFNPKCLQFLLII*LFSHHTRLRHLGIT
Trigger: CGTGATGCCAAGATGGCGGAGACGTGTGTGGTGAGAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAGGATTGAAGTCAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp TCCGGTTCAGTCTGGATTTTCCCACCCAGAGACCAAGACTTTTGTTaGTCCAGTAAGTCTTTGGTAAATAGAGATGAGAGAGCAATTACA +
Preference number: 6 (lower is better)
Translates to: SGSVWIFPPRDQDFC*SSKSLVNRDERAIT
Trigger: TGTAATTGCTCTCTCATCTCTATTTACCAAAGACTTACTGGACAAACAAAAGTCTTGGTCTCTGGGTGGGAAAATCCAGACTGAACCGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 90 bp TTATATTTCATTGCGCTGACACTTCTTGAACAAGTGCACATGGTTTaGTGGCGAACAATCCTTTGTGCTCTGGAAGGCTTGAAAATATTC +
Preference number: 6 (lower is better)
Translates to: LYFIALTLLEQVHMV*WRTILCALEGLKIF
Trigger: GAATATTTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGCAATGAAATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp GTTTTGTGGCGAACAATCCTTTGTGCTCTGGAAGGCTaGAAAATATTCATCCACTCTGTATCAGTCATATGT +
Preference number: 6 (lower is better)
Translates to: VLWRTILCALEG*KIFIHSVSVIC
Trigger: ACATATGACTGATACAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCACAAAGGATTGTTCGCCACAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 72 bp TCTAACAATTTAAATTTACCCGAGCAGTCTGAAATGTaGTTGACGGCCTCAATAATGTCTTTGTCCTTTAGC +
Preference number: 6 (lower is better)
Translates to: SNNLNLPEQSEM*LTASIMSLSFS
Trigger: GCTAAAGGACAAAGACATTATTGAGGCCGTCAATCACATTTCAGACTGCTCGGGTAAATTTAAATTGTTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS GCA 72 bp GTAAAAATTAGCTCATCATGTAGACAGCTTTTCTCTTaGTTGAGTCGAATTATCTCCTCTCGTTGTTCATTG +
Preference number: 6 (lower is better)
Translates to: VKISSSCRQLFS*LSRIISSRCSL
Trigger: CAATGAACAACGAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCTACATGATGAGCTAATTTTTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS TCA 72 bp AAATTAGCTCATCATGTAGACAGCTTTTCTCTTGCTTaGGTCGAATTATCTCCTCTCGTTGTTCATTGTTTT +
Preference number: 6 (lower is better)
Translates to: KLAHHVDSFSLA*VELSPLVVHCF
Trigger: AAAACAATGAACAACGAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCTACATGATGAGCTAATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4
CDS CAA 72 bp TTACATAAATCTGTCTCAGATTCTGGAGCTCGGAATTaGTACGATCTTGCTTTGACTTTGCAATATCAAGTA +
Preference number: 6 (lower is better)
Translates to: LHKSVSDSGARN*YDLALTLQYQV
Trigger: TACTTGATATTGCAAAGTCAAAGCAAGATCGTACAAATTCCGAGCTCCAGAATCTGAGACAGATTTATGTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094320.10
ENSMUST00000165148.4