Pregenerated sensors for CCDC59 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019897Ensembl transcript IDs: ENSMUST00000020049.9
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCGGGGGCGACGATGTATTTAATGTTAGTACAGCTGCCAGGCCAGTaGACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAACATGTT | + |
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Preference number: 1 (lower is better) Translates to: PGATMYLMLVQLPGQ*TDLSLISSNQVKHV Trigger: AACATGTTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCACTGGCCTGGCAGCTGTACTAACATTAAATACATCGTCGCCCCCGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR-3UTR TCA 90 bp | CCAGTCCTCCTGGCGGAGGCAACAGCACAAGTTTCAGAGCAAATATATAAGCTGGAAAATATCTCACTGTaGGCTCAGACCTATTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: PVLLAEATAQVSEQIYKLENISL*AQTYFK Trigger: TTTGAAATAGGTCTGAGCTCACAGTGAGATATTTTC...CAGCTTATATATTTGCTCTGAAACTTGTGCTGTTGCCTCCGCCAGGAGGACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR-3UTR TCA 90 bp | CCAGTCCTCCTGGCGGAGGCAACAGCACAAGTTTCAGAGCAAATATATAAGCTGTTTCTAGTAACCAAGTaGAACATGTTCACTTCACTG | + |
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Preference number: 2 (lower is better) Translates to: PVLLAEATAQVSEQIYKLFLVTK*NMFTSL Trigger: CAGTGAAGTGAACATGTTTCACTTGGTTACTAGAAA...CAGCTTATATATTTGCTCTGAAACTTGTGCTGTTGCCTCCGCCAGGAGGACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR CCA 72 bp | AGGGCTGGTGATGTGGGTCTGAAATTCCAGTCCTCCTaGCGGAGGCAACAGCACAAGTTTCAGAGCAAATAT | + |
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Preference number: 3 (lower is better) Translates to: RAGDVGLKFQSS*RRQQHKFQSKY Trigger: ATATTTGCTCTGAAACTTGTGCTGTTGCCTCCGCCAGGAGGACTGGAATTTCAGACCCACATCACCAGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR TCA 72 bp | AGGCAACAGCACAAGTTTCAGAGCAAATATATAAGCTaGAACTCTATCTCAAAACTCCCGGGGGCGACGATG | + |
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Preference number: 3 (lower is better) Translates to: RQQHKFQSKYIS*NSISKLPGATM Trigger: CATCGTCGCCCCCGGGAGTTTTGAGATAGAGTTTCAGCTTATATATTTGCTCTGAAACTTGTGCTGTTGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR-3UTR CAA 90 bp | CCAGTCCTCCTGGCGGAGGCAACAGCACAAGTTTCAGAGCAAATATATAAGCTGCTTGATGCCAACAAATaGAGTTCATTATTAGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: PVLLAEATAQVSEQIYKLLDANK*SSLLGG Trigger: ACCTCCTAATAATGAACTCAATTTGTTGGCATCAAG...CAGCTTATATATTTGCTCTGAAACTTGTGCTGTTGCCTCCGCCAGGAGGACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR GCA 72 bp | ACGATGTATTTAATGTTAGTACAGCTGCCAGGCCAGTaGACAGACCTAAGTTTAATTTCTAGTAACCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: TMYLMLVQLPGQ*TDLSLISSNQV Trigger: CACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCACTGGCCTGGCAGCTGTACTAACATTAAATACATCGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| 3UTR TCA 72 bp | GTGAAACATGTTCACTTCACTGAAAATATCTCACTGTaGGCTCAGACCTATTTCAAAGCAGTATATTTCATA | + |
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Preference number: 3 (lower is better) Translates to: VKHVHFTENISL*AQTYFKAVYFI Trigger: TATGAAATATACTGCTTTGAAATAGGTCTGAGCTCACAGTGAGATATTTTCAGTGAAGTGAACATGTTTCAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR GCA 90 bp | CCAGTCCTCCTGGCGGAGGCAACAGCACAAGTTTCAGAGCAAATATATAAGCTGCAAAACCTTGTCCCTTaGGCACGCTCCCCCGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: PVLLAEATAQVSEQIYKLQNLVP*ARSPGR Trigger: CCTTCCGGGGGAGCGTGCGCAAGGGACAAGGTTTTG...CAGCTTATATATTTGCTCTGAAACTTGTGCTGTTGCCTCCGCCAGGAGGACTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR CCA 90 bp | CAGCTGCCAGGCCAGTGCACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAACAGCTCTTCTGGCTGTaGCTGGTGACCACCTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: QLPGQCTDLSLISSNQVKQLFWL*LVTTWR Trigger: CCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTG...TTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCACTGGCCTGGCAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR TCA 90 bp | CAGCTGCCAGGCCAGTGCACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAATCTGGCTGTGGCTGGTaGCCACCTGGCGGTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: QLPGQCTDLSLISSNQVKSGCGW*PPGGSS Trigger: TGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGA...TTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCACTGGCCTGGCAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR GCA 90 bp | CCAGTCCTCCTGGCGGAGGCAACAGCACAAGTTTCAGAGCAAATATATAAGCTGTCTTCAGAGGAAGTCTaGTCAGTGCTGCCCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: PVLLAEATAQVSEQIYKLSSEEV*SVLPSS Trigger: AGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGA...CAGCTTATATATTTGCTCTGAAACTTGTGCTGTTGCCTCCGCCAGGAGGACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR TCA 90 bp | TGCACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAACATGTTCACTTCACTGAACTGGGACTCCTGTaGCGCTGGTGCCTCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: CTDLSLISSNQVKHVHFTELGLL*RWCLLH Trigger: GTGAAGGAGGCACCAGCGTCACAGGAGTCCCAGTTC...AGTGAAGTGAACATGTTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR TCA 90 bp | CAGCTGCCAGGCCAGTGCACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAATTCTTTGCTGTTTTCTaGGTCTTTCCTCTTCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: QLPGQCTDLSLISSNQVKFFAVF*VFPLRP Trigger: TGGCCGAAGAGGAAAGACTCAGAAAACAGCAAAGAA...TTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCACTGGCCTGGCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR GCA 90 bp | CAGTGCACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAACATGTTCACTTCAGGAAGTCTGCTCAGTaGTGCCCTCCTCTTCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: QCTDLSLISSNQVKHVHFRKSAQ*CPPLQA Trigger: TGCCTGAAGAGGAGGGCAGCACTGAGCAGACTTCCT...GAAGTGAACATGTTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS-3UTR GCA 90 bp | TGCACAGACCTAAGTTTAATTTCTAGTAACCAAGTGAAACATGTTCACTTCACTCAGTTTTCTCCGAAATaGAAAACCTTGTCCCTTGCG | + |
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Preference number: 4 (lower is better) Translates to: CTDLSLISSNQVKHVHFTQFSPK*KTLSLA Trigger: CGCAAGGGACAAGGTTTTGCATTTCGGAGAAAACTG...AGTGAAGTGAACATGTTTCACTTGGTTACTAGAAATTAAACTTAGGTCTGTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS GCA 90 bp | GTGGCTGGTGACCACCTGGCGGTTCTTCAGAGGAAGTCTGCTCAGTaGTGCCCTCCTCTTCAGGCAAAGGCCGGTCAACCTGTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: VAGDHLAVLQRKSAQ*CPPLQAKAGQPVLL Trigger: CAGAAGAACAGGTTGACCGGCCTTTGCCTGAAGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS GCA 90 bp | GCTGGTGACCACCTGGCGGTTCTTCAGAGGAAGTCTGCTCAGTGCTaGCCTCCTCTTCAGGCAAAGGCCGGTCAACCTGTTCTTCTGACA | + |
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Preference number: 5 (lower is better) Translates to: AGDHLAVLQRKSAQC*PPLQAKAGQPVLLT Trigger: TGTCAGAAGAACAGGTTGACCGGCCTTTGCCTGAAGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 90 bp | AGAACTTCCTGTGTTCAGCTCTTCTGGCTGTGGCTGGTGACCACCTaGCGGTTCTTCAGAGGAAGTCTGCTCAGTGCTGCCCTCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: RTSCVQLFWLWLVTT*RFFRGSLLSAALLF Trigger: GAAGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS TCA 90 bp | AAAGTCACAGAACTTCCTGTGTTCAGCTCTTCTGGCTGTGGCTGGTaGCCACCTGGCGGTTCTTCAGAGGAAGTCTGCTCAGTGCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: KVTELPVFSSSGCGW*PPGGSSEEVCSVLP Trigger: GGGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 90 bp | CTTTGGAAAAGTCACAGAACTTCCTGTGTTCAGCTCTTCTGGCTGTaGCTGGTGACCACCTGGCGGTTCTTCAGAGGAAGTCTGCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LWKSHRTSCVQLFWL*LVTTWRFFRGSLLS Trigger: ACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACTTTTCCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 90 bp | CTTATTCTTTGGAAAAGTCACAGAACTTCCTGTGTTCAGCTCTTCTaGCTGTGGCTGGTGACCACCTGGCGGTTCTTCAGAGGAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: LILWKSHRTSCVQLF*LWLVTTWRFFRGSL Trigger: CAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACTTTTCCAAAGAATAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 72 bp | CCTTGTCCCTTGCGCACGCTCCCCCGGAAGGCTTGCTaGGGGTTCGGCCGCCAAGTCCTGCGCTTCCCATTC | + |
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Preference number: 6 (lower is better) Translates to: PCPLRTLPRKAC*GFGRQVLRFPF Trigger: GAATGGGAAGCGCAGGACTTGGCGGCCGAACCCCCAGCAAGCCTTCCGGGGGAGCGTGCGCAAGGGACAAGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS GCA 72 bp | AAACCTTGTCCCTTGCGCACGCTCCCCCGGAAGGCTTaGTGGGGGTTCGGCCGCCAAGTCCTGCGCTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: KPCPLRTLPRKA*WGFGRQVLRFP Trigger: TGGGAAGCGCAGGACTTGGCGGCCGAACCCCCAGCAAGCCTTCCGGGGGAGCGTGCGCAAGGGACAAGGTTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS GCA 72 bp | GACCACCTGGCGGTTCTTCAGAGGAAGTCTGCTCAGTaGTGCCCTCCTCTTCAGGCAAAGGCCGGTCAACCT | + |
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Preference number: 6 (lower is better) Translates to: DHLAVLQRKSAQ*CPPLQAKAGQP Trigger: AGGTTGACCGGCCTTTGCCTGAAGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 72 bp | TGTGTTCAGCTCTTCTGGCTGTGGCTGGTGACCACCTaGCGGTTCTTCAGAGGAAGTCTGCTCAGTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: CVQLFWLWLVTT*RFFRGSLLSAA Trigger: GGCAGCACTGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS TCA 72 bp | GAACTTCCTGTGTTCAGCTCTTCTGGCTGTGGCTGGTaGCCACCTGGCGGTTCTTCAGAGGAAGTCTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: ELPVFSSSGCGW*PPGGSSEEVCS Trigger: TGAGCAGACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 72 bp | AGTCACAGAACTTCCTGTGTTCAGCTCTTCTGGCTGTaGCTGGTGACCACCTGGCGGTTCTTCAGAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: SHRTSCVQLFWL*LVTTWRFFRGS Trigger: ACTTCCTCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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| CDS CCA 72 bp | TGGAAAAGTCACAGAACTTCCTGTGTTCAGCTCTTCTaGCTGTGGCTGGTGACCACCTGGCGGTTCTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: WKSHRTSCVQLF*LWLVTTWRFFR Trigger: TCTGAAGAACCGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACTTTTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020049.9 |
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