Pregenerated sensors for CCDC54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050685Ensembl transcript IDs: ENSMUST00000062439.6
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTTTTGCAGTCCACACCTaGCCAGCGGCAGCTCTTACT | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITFAVHT*PAAALT Trigger: AGTAAGAGCTGCCGCTGGCCAGGTGTGGACTGCAAA...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTCAGTGTCTGGAGAGGTaGCTGTGCCCTTTGGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITQCLER*LCPLGF Trigger: AAACCCCAAAGGGCACAGCCACCTCTCCAGACACTG...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTGGGCTCTGGGTAACTaGACACTCTCTCTGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNWALGN*TLSLAL Trigger: CAGAGCCAGAGAGAGTGTCCAGTTACCCAGAGCCCA...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTCTCACCAGTGGGCTCTaGGTAACTGGACACTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITLTSGL*VTGHSL Trigger: GAGAGAGTGTCCAGTTACCCAGAGCCCACTGGTGAG...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR GCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACCTGGAGAGGTGGCTGTaGCCTTTGGGGTTTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNLERWL*PLGFQF Trigger: AAACTGAAACCCCAAAGGGCACAGCCACCTCTCCAG...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTGAGAGAGACAGATTGTaGCCAACCTCCCAATGGCTC | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITERDRL*PTSQWL Trigger: GAGCCATTGGGAGGTTGGCCACAATCTGTCTCTCTC...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR TCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTACAGAAGCCACTGGATaGATTCCTCTAACTTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITTEATG*IPLTWW Trigger: CCACCAAGTTAGAGGAATTCATCCAGTGGCTTCTGT...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR TCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTAGTCTCTCTGGGGTATaGTTTGTGGTTCCTCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITSLSGV*FVVPQE Trigger: TTCCTGAGGAACCACAAATCATACCCCAGAGAGACT...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACGATCTTCTGATCTTGTaGAGGTTTGCAGTCCACACC | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNDLLIL*RFAVHT Trigger: GGTGTGGACTGCAAACCTCCACAAGATCAGAAGATC...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTTGGAGAGCATGTCTTTaGTGGTTGCAGTCTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITWRACL*WLQSVC Trigger: ACAGACAGACTGCAACCACCAAAGACATGCTCTCCA...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR GCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACCATGTCTTTGGTGGTTaGAGTCTGTCTGTCTTCACT | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNHVFGG*SLSVFT Trigger: AGTGAAGACAGACAGACTGCAACCACCAAAGACATG...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR TCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTCTCCAATTTCCTCCATaGACAAAAGTGAGCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITLQFPP*TKVSLI Trigger: GATCAAGCTCACTTTTGTTCATGGAGGAAATTGGAG...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR GCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACCCTCTAGACAATGAATaGTGGAGTAAGAATTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNPLDNE*WSKNSG Trigger: GCCAGAATTCTTACTCCAGCATTCATTGTCTAGAGG...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACCCCGTTTTAATGTCTTaGAGCATTGCTGGTAGATTC | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNPVLMS*SIAGRF Trigger: GAATCTACCAGCAATGCTCCAAGACATTAAAACGGG...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACCTAGACAGAAGCCACTaGATGAATTCCTCTAACTTG | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNLDRSH*MNSSNL Trigger: CAAGTTAGAGGAATTCATCCAGTGGCTTCTGTCTAG...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR TCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTAGTTATTTCCTCTTTTaGGGAACCGAAAAGGCAATA | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITSYFLF*GTEKAI Trigger: TATTGCCTTTTCGGTTCCTCAAAAGAGGAAATAACT...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR GCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTTTGACCTTACCTTTTTaGAACCCACTGATGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITLTLPF*NPLMHF Trigger: AAAATGCATCAGTGGGTTGCAAAAAGGTAAGGTCAA...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACCTAGACAATGAATGCTaGAGTAAGAATTCTGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNLDNEC*SKNSGF Trigger: AAAGCCAGAATTCTTACTCCAGCATTCATTGTCTAG...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CCA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTCCCACTGATGCATTTTaGAGGCTATTATTTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: TRSKRATFILSQAKQEITPTDAF*RLLFFF Trigger: GAAGAAAAATAATAGCCTCCAAAATGCATCAGTGGG...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CAA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTAGGTGGCTGTGCCCTTaGGGGTTTCAGTTTGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: TRSKRATFILSQAKQEITRWLCP*GFQFVG Trigger: TCCTACAAACTGAAACCCCAAAGGGCACAGCCACCT...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CAA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACAGAGAGAGAGACAGATaGTGGCCAACCTCCCAATGG | + |
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Preference number: 5 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNRERDR*WPTSQW Trigger: CCATTGGGAGGTTGGCCACAATCTGTCTCTCTCTCT...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS GCA 90 bp | TTTCTGGTAAACATTTTTAAGAGATCTTCTGATCTTGTGGAGGTTTaGAGTCCACACCTGGCCAGCGGCAGCTCTTACTCTTTTGGTGTG | + |
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Preference number: 5 (lower is better) Translates to: FLVNIFKRSSDLVEV*SPHLASGSSYSFGV Trigger: CACACCAAAAGAGTAAGAGCTGCCGCTGGCCAGGTGTGGACTGCAAACCTCCACAAGATCAGAAGATCTCTTAAAAATGTTTACCAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CAA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTCTCTGGGGTATGATTaGTGGTTCCTCAGGAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNSLGYD*WFLRKD Trigger: ATCCTTCCTGAGGAACCACAAATCATACCCCAGAGA...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS TCA 90 bp | AAGAATTCTGGCTTTCCAGCTCCGTCACCTTCTTCTTTAGAGTGTTaGTATCTTCTTTCATGGAGAGCATGTCTTTGGTGGTTGCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KNSGFPAPSPSSLEC*YLLSWRACLWWLQS Trigger: AGACTGCAACCACCAAAGACATGCTCTCCATGAAAGAAGATATCAACACTCTAAAGAAGAAGGTGACGGAGCTGGAAAGCCAGAATTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS CCA 90 bp | ATTCTTTACCCCTTTGTCCTTCCAAGACCTCTAGACAATGAATGCTaGAGTAAGAATTCTGGCTTTCCAGCTCCGTCACCTTCTTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: ILYPFVLPRPLDNEC*SKNSGFPAPSPSSL Trigger: TAAAGAAGAAGGTGACGGAGCTGGAAAGCCAGAATTCTTACTCCAGCATTCATTGTCTAGAGGTCTTGGAAGGACAAAGGGGTAAAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS CCA 90 bp | TTCGTCATTTGGTTGAGGAGTTCCGTTTGTCCCGTTTTAATGTCTTaGAGCATTGCTGGTAGATTCATGTCTTCATTCAAACTGAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: FVIWLRSSVCPVLMS*SIAGRFMSSFKLRV Trigger: TACTCTCAGTTTGAATGAAGACATGAATCTACCAGCAATGCTCCAAGACATTAAAACGGGACAAACGGAACTCCTCAACCAAATGACGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CAA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTTTTGACCTTACCTTTTaGCAACCCACTGATGCATTT | + |
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Preference number: 5 (lower is better) Translates to: TRSKRATFILSQAKQEITFDLTF*QPTDAF Trigger: AAATGCATCAGTGGGTTGCAAAAAGGTAAGGTCAAA...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CAA 90 bp | ACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACTATGAATTCCTCTAACTaGGTGGCACTGAGGAAAAAT | + |
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Preference number: 5 (lower is better) Translates to: TRSKRATFILSQAKQEITMNSSN*VALRKN Trigger: ATTTTTCCTCAGTGCCACCAAGTTAGAGGAATTCAT...AGTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS-3UTR CAA 90 bp | TACTCGAAGCAAACGGGCTACATTTATTTTGTCCCAAGCCAAGCAGGAAATAACGAGTTATTTCCTCTTTaGAGGAACCGAAAAGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: YSKQTGYIYFVPSQAGNNELFPL*RNRKGN Trigger: ATTGCCTTTTCGGTTCCTCAAAAGAGGAAATAACTC...GTTATTTCCTGCTTGGCTTGGGACAAAATAAATGTAGCCCGTTTGCTTCGAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS CAA 72 bp | GGCTCCGGTGAAGGCGTAGTCTCTCTGGGGTATGATTaGTGGTTCCTCAGGAAGGATGGTGGACCTAGACAG | + |
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Preference number: 6 (lower is better) Translates to: GSGEGVVSLGYD*WFLRKDGGPRQ Trigger: CTGTCTAGGTCCACCATCCTTCCTGAGGAACCACAAATCATACCCCAGAGAGACTACGCCTTCACCGGAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS GCA 72 bp | GATATCTTCTTTCATGGAGAGCATGTCTTTGGTGGTTaGAGTCTGTCTGTCTTCACTAATGTTTATTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: DIFFHGEHVFGG*SLSVFTNVYSG Trigger: GCCAGAATAAACATTAGTGAAGACAGACAGACTGCAACCACCAAAGACATGCTCTCCATGAAAGAAGATATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS CAA 72 bp | AGAGTGTTGATATCTTCTTTCATGGAGAGCATGTCTTaGGTGGTTGCAGTCTGTCTGTCTTCACTAATGTTT | + |
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Preference number: 6 (lower is better) Translates to: RVLISSFMESMS*VVAVCLSSLMF Trigger: AAACATTAGTGAAGACAGACAGACTGCAACCACCAAAGACATGCTCTCCATGAAAGAAGATATCAACACTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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| CDS CAA 90 bp | TTCTTCTTTAGAGTGTTGATATCTTCTTTCATGGAGAGCATGTCTTaGGTGGTTGCAGTCTGTCTGTCTTCACTAATGTTTATTCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: FFFRVLISSFMESMS*VVAVCLSSLMFILA Trigger: AGCCAGAATAAACATTAGTGAAGACAGACAGACTGCAACCACCAAAGACATGCTCTCCATGAAAGAAGATATCAACACTCTAAAGAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062439.6 |
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