Pregenerated sensors for CCDC43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020925Ensembl transcript IDs: ENSMUST00000092569.13, ENSMUST00000164506.3
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGCCTTTATTGACAAGTGGATGTGGCTGGGACAGAAGCAGACTTaGATTCTGTCCACCCTTTCCTCTCCCAGGTTTTCCATTCACTCA | + |
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Preference number: 1 (lower is better) Translates to: KAFIDKWMWLGQKQT*ILSTLSSPRFSIHS Trigger: TGAGTGAATGGAAAACCTGGGAGAGGAAAGGGTGGACAGAATTCAAGTCTGCTTCTGTCCCAGCCACATCCACTTGTCAATAAAGGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR GCA 90 bp | TTCAGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTaGAGGTGTGTCCAACCCGAGGTCAAGGACAGCTATAAATTCAGC | + |
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Preference number: 1 (lower is better) Translates to: FSFFKPGIIRSYYSC*RCVQPEVKDSYKFS Trigger: GCTGAATTTATAGCTGTCCTTGACCTCGGGTTGGACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR GCA 90 bp | TACCCTAACTCCAGATCTTTGGTAAAGATTCTAACAATAATTGACTaGCCACACCACCAGAGCATGGCACATTTACAAGTGATTGTGATT | + |
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Preference number: 1 (lower is better) Translates to: YPNSRSLVKILTIID*PHHQSMAHLQVIVI Trigger: AATCACAATCACTTGTAAATGTGCCATGCTCTGGTGGTGTGGGCAGTCAATTATTGTTAGAATCTTTACCAAAGATCTGGAGTTAGGGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTACAGAAGGCCTTTATTaGCAAGTGGATGTGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSTEGLY*QVDVAG Trigger: CCCAGCCACATCCACTTGTCAATAAAGGCCTTCTGT...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTCACACAATTCATGGGTaGAAGGAGCAGAGTGGGCCA | + |
|
Preference number: 2 (lower is better) Translates to: VESSDPWYKIILSEKLFSHTIHG*KEQSGP Trigger: TGGCCCACTCTGCTCCTTCCACCCATGAATTGTGTG...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTGCCTGGGCTACAGAATaGAACCCAGTCTCAAAACAA | + |
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Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSAWATE*NPVSKQ Trigger: TTGTTTTGAGACTGGGTTTCATTCTGTAGCCCAGGC...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTGGACAGAAGCAGACTTaGATTCTGTCCACCCTTTCC | + |
|
Preference number: 2 (lower is better) Translates to: VESSDPWYKIILSEKLFSGQKQT*ILSTLS Trigger: GGAAAGGGTGGACAGAATTCAAGTCTGCTTCTGTCC...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTACAGAAGGCCTTTATTaGCAAGTGGATGTGGCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: VESSDPWYKIILSEKLFSTEGLY*QVDVAG Trigger: CCCAGCCACATCCACTTGTCAATAAAGGCCTTCTGT...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCACACAATTCATGGGTaGAAGGAGCAGAGTGGGCCA | + |
|
Preference number: 2 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVHTIHG*KEQSGP Trigger: TGGCCCACTCTGCTCCTTCCACCCATGAATTGTGTG...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTATTGACAAGTGGATGTaGCTGGGACAGAAGCAGACT | + |
|
Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSIDKWM*LGQKQT Trigger: AGTCTGCTTCTGTCCCAGCCACATCCACTTGTCAAT...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTGCCTTTATTGACAAGTaGATGTGGCTGGGACAGAAG | + |
|
Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSAFIDK*MWLGQK Trigger: CTTCTGTCCCAGCCACATCCACTTGTCAATAAAGGC...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTGTTTCCTTCAGGATGTaGGCTTTCTGTATCTGGCTA | + |
|
Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSVSFRM*AFCIWL Trigger: TAGCCAGATACAGAAAGCTCACATCCTGAAGGAAAC...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | TCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCAACGATTCTAACAATAATTaGCTGCCCACACCACCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: SLSQELLGLTIHVAGVSNDSNNN*LPTPPE Trigger: CTCTGGTGGTGTGGGCAGTCAATTATTGTTAGAATC...GTTGGACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR GCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTCTAACAATAATTGACTaGCCACACCACCAGAGCATG | + |
|
Preference number: 2 (lower is better) Translates to: VESSDPWYKIILSEKLFSLTIID*PHHQSM Trigger: CATGCTCTGGTGGTGTGGGCAGTCAATTATTGTTAG...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR GCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTGCTTTTGATACCTGTTaGCCAAAGTCAGGTACAGAA | + |
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Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSAFDTC*PKSGTE Trigger: TTCTGTACCTGACTTTGGGCAACAGGTATCAAAAGC...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCGATTCTAACAATAATTaGCTGCCCACACCACCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVDSNNN*LPTPPE Trigger: CTCTGGTGGTGTGGGCAGTCAATTATTGTTAGAATC...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR GCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCTAACAATAATTGACTaGCCACACCACCAGAGCATG | + |
|
Preference number: 2 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVLTIID*PHHQSM Trigger: CATGCTCTGGTGGTGTGGGCAGTCAATTATTGTTAG...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR GCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTTCAAAAGGTAGGACATaGCTGCAGGATAAATCAAGA | + |
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Preference number: 2 (lower is better) Translates to: TKVSKLSPNARFIGHVWSSKGRT*LQDKSR Trigger: TCTTGATTTATCCTGCAGGCATGTCCTACCTTTTGA...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTGTTTCCTTCAGGATGTaGGCTTTCTGTATCTGGCTA | + |
|
Preference number: 2 (lower is better) Translates to: NKSPLYFRANSASEAICTVSFRM*AFCIWL Trigger: TAGCCAGATACAGAAAGCTCACATCCTGAAGGAAAC...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR TCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCTCCACTTCCCTAATTTaGTGTCAGAAAGTCTGGATC | + |
|
Preference number: 2 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVSTSLI*CQKVWI Trigger: GATCCAGACTTTCTGACATCAAATTAGGGAAGTGGA...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR GCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCTCAAAAGGTAGGACATaGCTGCAGGATAAATCAAGA | + |
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Preference number: 2 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVSKGRT*LQDKSR Trigger: TCTTGATTTATCCTGCAGGCATGTCCTACCTTTTGA...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR TCA 72 bp | ATTGACAAGTGGATGTGGCTGGGACAGAAGCAGACTTaGATTCTGTCCACCCTTTCCTCTCCCAGGTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: IDKWMWLGQKQT*ILSTLSSPRFS Trigger: GGAAAACCTGGGAGAGGAAAGGGTGGACAGAATTCAAGTCTGCTTCTGTCCCAGCCACATCCACTTGTCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR TCA 72 bp | ACCTGTTGCCCAAAGTCAGGTACAGAAGGCCTTTATTaGCAAGTGGATGTGGCTGGGACAGAAGCAGACTTG | + |
|
Preference number: 3 (lower is better) Translates to: TCCPKSGTEGLY*QVDVAGTEADL Trigger: CAAGTCTGCTTCTGTCCCAGCCACATCCACTTGTCAATAAAGGCCTTCTGTACCTGACTTTGGGCAACAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR CCA 72 bp | AGGTACAGAAGGCCTTTATTGACAAGTGGATGTGGCTaGGACAGAAGCAGACTTGAATTCTGTCCACCCTTT | + |
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Preference number: 3 (lower is better) Translates to: RYRRPLLTSGCG*DRSRLEFCPPF Trigger: AAAGGGTGGACAGAATTCAAGTCTGCTTCTGTCCCAGCCACATCCACTTGTCAATAAAGGCCTTCTGTACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CAA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTTACAGAAGGCCTTTATaGACAAGTGGATGTGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: TKVSKLSPNARFIGHVWSYRRPL*TSGCGW Trigger: CCAGCCACATCCACTTGTCAATAAAGGCCTTCTGTA...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR GCA 72 bp | TTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTaGAGGTGTGTCCAACCCGAGGTCAAGGACAGCTAT | + |
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Preference number: 3 (lower is better) Translates to: FKPGIIRSYYSC*RCVQPEVKDSY Trigger: ATAGCTGTCCTTGACCTCGGGTTGGACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CAA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTGTTCTCTTGAGGCTTTaGATACCTGTTGCCCAAAGT | + |
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Preference number: 3 (lower is better) Translates to: TKVSKLSPNARFIGHVWSVLLRL*IPVAQS Trigger: ACTTTGGGCAACAGGTATCAAAAGCCTCAAGAGAAC...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR GCA 72 bp | TCCAGATCTTTGGTAAAGATTCTAACAATAATTGACTaGCCACACCACCAGAGCATGGCACATTTACAAGTG | + |
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Preference number: 3 (lower is better) Translates to: SRSLVKILTIID*PHHQSMAHLQV Trigger: CACTTGTAAATGTGCCATGCTCTGGTGGTGTGGGCAGTCAATTATTGTTAGAATCTTTACCAAAGATCTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR-3UTR CAA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTAGAGAAACTGTTCTCTaGAGGCTTTTGATACCTGTT | + |
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Preference number: 3 (lower is better) Translates to: TKVSKLSPNARFIGHVWSRETVL*RLLIPV Trigger: AACAGGTATCAAAAGCCTCAAGAGAACAGTTTCTCT...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR CAA 72 bp | AGTCTTTCTTCCATACTGGGGCCCAGTCCCAGGCCCTaGTATATGCTAAGCAGGCACGCAACACAACTACAG | + |
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Preference number: 4 (lower is better) Translates to: SLSSILGPSPRP*YMLSRHATQLQ Trigger: CTGTAGTTGTGTTGCGTGCCTGCTTAGCATATACAAGGGCCTGGGACTGGGCCCCAGTATGGAAGAAAGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTGCCTTCACCGAGGACTaGCGCGGCCACTTCGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: VESSDPWYKIILSEKLFSAFTED*RGHFAG Trigger: CCCAGCGAAGTGGCCGCGGCAGTCCTCGGTGAAGGC...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCGCCTTCACCGAGGACTaGCGCGGCCACTTCGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVAFTED*RGHFAG Trigger: CCCAGCGAAGTGGCCGCGGCAGTCCTCGGTGAAGGC...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR CAA 72 bp | TACCTGTTGCCCAAAGTCAGGTACAGAAGGCCTTTATaGACAAGTGGATGTGGCTGGGACAGAAGCAGACTT | + |
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Preference number: 4 (lower is better) Translates to: YLLPKVRYRRPL*TSGCGWDRSRL Trigger: AAGTCTGCTTCTGTCCCAGCCACATCCACTTGTCAATAAAGGCCTTCTGTACCTGACTTTGGGCAACAGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTCTGGGCCAGCAGGGCTaGTTTCCTCTGCTTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: TKVSKLSPNARFIGHVWSLGQQG*FPLLLF Trigger: GAAGAGAAGCAGAGGAAAGCAGCCCTGCTGGCCCAG...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTCTGGGCCAGCAGGGCTaGTTTCCTCTGCTTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: VESSDPWYKIILSEKLFSLGQQG*FPLLLF Trigger: GAAGAGAAGCAGAGGAAAGCAGCCCTGCTGGCCCAG...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR TCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTGGACTCATCCCGAAGTaGGTCTCTCTCCAATTTCCG | + |
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Preference number: 4 (lower is better) Translates to: TKVSKLSPNARFIGHVWSGLIPK*VSLQFP Trigger: CGGAAATTGGAGAGAGACTCACTTCGGGATGAGTCC...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTGCAGAGAGGATACCCTaGAGGGCGTCCAGCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: NKSPLYFRANSASEAICTAERIP*RASSFS Trigger: AGAGAAGCTGGACGCCCTGCAGGGTATCCTCTCTGC...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTCCTTGCGTTCCTGCTTaGCTAGTTTGTCCTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: VESSDPWYKIILSEKLFSPCVPA*LVCPSP Trigger: GGGAGAAGGACAAACTAGCCAAGCAGGAACGCAAGG...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR TCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCTGCTTCTCTTCTTCTaGAACCACCCTGGGCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVLLLFF*NHPGLH Trigger: GTGAAGCCCAGGGTGGTTTCAGAAGAAGAGAAGCAG...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR TCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCGGACTCATCCCGAAGTaGGTCTCTCTCCAATTTCCG | + |
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Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVGLIPK*VSLQFP Trigger: CGGAAATTGGAGAGAGACTCACTTCGGGATGAGTCC...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | TCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCAACACCACAATCTGTGCCTaGTTCTCAATCAAGGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: SLSQELLGLTIHVAGVSNTTICA*FSIKVA Trigger: CGCCACCTTGATTGAGAAGCAGGCACAGATTGTGGT...GTTGGACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTTTCTCCTTGCGTTCCTaGTTGGCTAGTTTGTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TKVSKLSPNARFIGHVWSFSLRS*LASLSF Trigger: GAAGGACAAACTAGCCAAGCAGGAACGCAAGGAGAA...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| 3UTR CAA 72 bp | GATCACATTCCAAATAATTTCCTCCACTTCCCTAATTaGATGTCAGAAAGTCTGGATCTAGGCAGGGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: DHIPNNFLHFPN*MSESLDLGRAL Trigger: AAGGGCCCTGCCTAGATCCAGACTTTCTGACATCAAATTAGGGAAGTGGAGGAAATTATTTGGAATGTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR TCA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTCTGCTTCTCTTCTTCTaGAACCACCCTGGGCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: NKSPLYFRANSASEAICTLLLFF*NHPGLH Trigger: GTGAAGCCCAGGGTGGTTTCAGAAGAAGAGAAGCAG...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR TCA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTCCAATTTCCGAGCATTaGGAACATCTTCCACATTGG | + |
|
Preference number: 4 (lower is better) Translates to: TKVSKLSPNARFIGHVWSPISEH*EHLPHW Trigger: CCAATGTGGAAGATGTTCTCAATGCTCGGAAATTGG...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR GCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCACCACAATCTGTGCCTaGTTCTCAATCAAGGTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVTTICA*FSIKVA Trigger: CGCCACCTTGATTGAGAAGCAGGCACAGATTGTGGT...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTTGTTCCTTCTTCCTTTaGGACTCATCCCGAAGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VESSDPWYKIILSEKLFSCSFFL*DSSRSE Trigger: CTCACTTCGGGATGAGTCCCAAAGGAAGAAGGAACA...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| 3UTR CAA 72 bp | AATAATCTTATCAGAGAAACTGTTCTCTTGAGGCTTTaGATACCTGTTGCCCAAAGTCAGGTACAGAAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: NNLIRETVLLRL*IPVAQSQVQKA Trigger: GGCCTTCTGTACCTGACTTTGGGCAACAGGTATCAAAAGCCTCAAGAGAACAGTTTCTCTGATAAGATTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR GCA 90 bp | TCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCAACTCTTTTCCTTCTCCTTaGGTTCCTGCTTGGCTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SLSQELLGLTIHVAGVSNSFPSP*VPAWLV Trigger: AACTAGCCAAGCAGGAACGCAAGGAGAAGGAAAAGA...GTTGGACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCTGTTCCTTCTTCCTTTaGGACTCATCCCGAAGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVCSFFL*DSSRSE Trigger: CTCACTTCGGGATGAGTCCCAAAGGAAGAAGGAACA...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR GCA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTTTCTCCTTGCGTTCCTaGTTGGCTAGTTTGTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NKSPLYFRANSASEAICTFSLRS*LASLSF Trigger: GAAGGACAAACTAGCCAAGCAGGAACGCAAGGAGAA...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR GCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCTCTTTTCCTTCTCCTTaGGTTCCTGCTTGGCTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVSFPSP*VPAWLV Trigger: AACTAGCCAAGCAGGAACGCAAGGAGAAGGAAAAGA...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CCA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTGAACATCTTCCACATTaGTGTTTCGGAACAAGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: VESSDPWYKIILSEKLFSEHLPH*CFGTRF Trigger: GAACCTTGTTCCGAAACACCAATGTGGAAGATGTTC...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CCA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCGAACATCTTCCACATTaGTGTTTCGGAACAAGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVEHLPH*CFGTRF Trigger: GAACCTTGTTCCGAAACACCAATGTGGAAGATGTTC...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR GCA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTATCATCTTTCTTATCTaGTTCAGTCTCTTCGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: NKSPLYFRANSASEAICTIIFLI*FSLFVC Trigger: ACAGACGAAGAGACTGAAGCAGATAAGAAAGATGAT...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164506.3 |
||
| CDS GCA 90 bp | TTCACCACAATCTGTGCCTGCTTCTCAATCAAGGTGGCGATGGCCTaGACCTCATCTTCCTTTTTGACTTTGGTGGTGACATCCCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: FTTICACFSIKVAMA*TSSSFLTLVVTSRV Trigger: AACACGGGATGTCACCACCAAAGTCAAAAAGGAAGATGAGGTGCAGGCCATCGCCACCTTGATTGAGAAGCAGGCACAGATTGTGGTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS TCA 90 bp | TTTGGGACTCATCCCGAAGTGAGTCTCTCTCCAATTTCCGAGCATTaGGAACATCTTCCACATTGGTGTTTCGGAACAAGGTTCTGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: FGTHPEVSLSPISEH*EHLPHWCFGTRFCQ Trigger: CTGACAGAACCTTGTTCCGAAACACCAATGTGGAAGATGTTCTCAATGCTCGGAAATTGGAGAGAGACTCACTTCGGGATGAGTCCCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS TCA 90 bp | CACCTCATCTTCCTTTTTGACTTTGGTGGTGACATCCCGTGTTTCTaGCCATCGCTCCACAATTTCCTTACAGATATCAAGGAGAGACTC | + |
|
Preference number: 5 (lower is better) Translates to: HLIFLFDFGGDIPCF*PSLHNFLTDIKERL Trigger: GAGTCTCTCCTTGATATCTGTAAGGAAATTGTGGAGCGATGGTCAGAAACACGGGATGTCACCACCAAAGTCAAAAAGGAAGATGAGGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS TCA 90 bp | GAACATCTTCCACATTGGTGTTTCGGAACAAGGTTCTGTCAGAACTaGCGTTTGCTGTTGAGGCACCCGCATCATCTTTCTTATCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: EHLPHWCFGTRFCQN*RLLLRHPHHLSYLL Trigger: AAGCAGATAAGAAAGATGATGCGGGTGCCTCAACAGCAAACGTCAGTTCTGACAGAACCTTGTTCCGAAACACCAATGTGGAAGATGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCTCCTGCTTGGCTAGTTaGTCCTTCTCCCTCTGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVSCLAS*SFSLCS Trigger: GCTGCAGAGGGAGAAGGACAAACTAGCCAAGCAGGA...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTTCCTTGCGTTCCTGCTaGGCTAGTTTGTCCTTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: VESSDPWYKIILSEKLFSSLRSC*ASLSFS Trigger: GGAGAAGGACAAACTAGCCAAGCAGGAACGCAAGGA...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CAA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTTCCTGCTTGGCTAGTTaGTCCTTCTCCCTCTGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: NKSPLYFRANSASEAICTSCLAS*SFSLCS Trigger: GCTGCAGAGGGAGAAGGACAAACTAGCCAAGCAGGA...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CAA 90 bp | TCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCAACTTCTTTTCCTTCTCCTaGCGTTCCTGCTTGGCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: SLSQELLGLTIHVAGVSNFFSFS*RSCLAS Trigger: ACTAGCCAAGCAGGAACGCAAGGAGAAGGAAAAGAA...GTTGGACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | GTGGAGTCTTCTGACCCCTGGTATAAAATAATCTTATCAGAGAAACTGTTCTCTTTCTTTTCCTTCTCCTaGCGTTCCTGCTTGGCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: VESSDPWYKIILSEKLFSFFSFS*RSCLAS Trigger: ACTAGCCAAGCAGGAACGCAAGGAGAAGGAAAAGAA...AGAGAACAGTTTCTCTGATAAGATTATTTTATACCAGGGGTCAGAAGACTCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTAGAACATCTTCCACATaGGTGTTTCGGAACAAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: TKVSKLSPNARFIGHVWSRTSST*VFRNKV Trigger: AACCTTGTTCCGAAACACCAATGTGGAAGATGTTCT...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | ACAAAAGTCAGCAAACTTTCTCCAAATGCTAGGTTTATAGGCCACGTATGGTCTTCCAATTTCCGAGCATaGAGAACATCTTCCACATTG | + |
|
Preference number: 5 (lower is better) Translates to: TKVSKLSPNARFIGHVWSSNFRA*RTSSTL Trigger: CAATGTGGAAGATGTTCTCAATGCTCGGAAATTGGA...AGACCATACGTGGCCTATAAACCTAGCATTTGGAGAAAGTTTGCTGACTTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS-3UTR CAA 90 bp | AGTTTCTTTAAGCCAGGAATTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCTCTTCCTTTTTGACTTaGGTGGTGACATCCCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: SFFKPGIIRSYYSCCRCVSSFLT*VVTSRV Trigger: AACACGGGATGTCACCACCAAAGTCAAAAAGGAAGA...GACACACCTGCAACATGAATAGTAAGACCTAATAATTCCTGGCTTAAAGAAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTTCTTCCTTTTTGACTTaGGTGGTGACATCCCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: NKSPLYFRANSASEAICTSSFLT*VVTSRV Trigger: AACACGGGATGTCACCACCAAAGTCAAAAAGGAAGA...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS-3UTR CAA 90 bp | AACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCTCAGAAGCAATTTGTACTAGAACATCTTCCACATaGGTGTTTCGGAACAAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: NKSPLYFRANSASEAICTRTSST*VFRNKV Trigger: AACCTTGTTCCGAAACACCAATGTGGAAGATGTTCT...AGTACAAATTGCTTCTGAGGCACTATTTGCCCTAAAATATAATGGGCTTTTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS CAA 72 bp | GTGGCGATGGCCTGCACCTCATCTTCCTTTTTGACTTaGGTGGTGACATCCCGTGTTTCTGACCATCGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: VAMACTSSSFLT*VVTSRVSDHRS Trigger: GGAGCGATGGTCAGAAACACGGGATGTCACCACCAAAGTCAAAAAGGAAGATGAGGTGCAGGCCATCGCCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS CAA 90 bp | TCAATCAAGGTGGCGATGGCCTGCACCTCATCTTCCTTTTTGACTTaGGTGGTGACATCCCGTGTTTCTGACCATCGCTCCACAATTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SIKVAMACTSSSFLT*VVTSRVSDHRSTIS Trigger: GGAAATTGTGGAGCGATGGTCAGAAACACGGGATGTCACCACCAAAGTCAAAAAGGAAGATGAGGTGCAGGCCATCGCCACCTTGATTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS GCA 72 bp | ATCTGTGCCTGCTTCTCAATCAAGGTGGCGATGGCCTaGACCTCATCTTCCTTTTTGACTTTGGTGGTGACA | + |
|
Preference number: 6 (lower is better) Translates to: ICACFSIKVAMA*TSSSFLTLVVT Trigger: TGTCACCACCAAAGTCAAAAAGGAAGATGAGGTGCAGGCCATCGCCACCTTGATTGAGAAGCAGGCACAGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS CAA 72 bp | ATCAAGGTGGCGATGGCCTGCACCTCATCTTCCTTTTaGACTTTGGTGGTGACATCCCGTGTTTCTGACCAT | + |
|
Preference number: 6 (lower is better) Translates to: IKVAMACTSSSF*TLVVTSRVSDH Trigger: ATGGTCAGAAACACGGGATGTCACCACCAAAGTCAAAAAGGAAGATGAGGTGCAGGCCATCGCCACCTTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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| CDS TCA 72 bp | CCACATTGGTGTTTCGGAACAAGGTTCTGTCAGAACTaGCGTTTGCTGTTGAGGCACCCGCATCATCTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PHWCFGTRFCQN*RLLLRHPHHLS Trigger: AGAAAGATGATGCGGGTGCCTCAACAGCAAACGTCAGTTCTGACAGAACCTTGTTCCGAAACACCAATGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS CAA 90 bp | CTTTGGGACTCATCCCGAAGTGAGTCTCTCTCCAATTTCCGAGCATaGAGAACATCTTCCACATTGGTGTTTCGGAACAAGGTTCTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: LWDSSRSESLSNFRA*RTSSTLVFRNKVLS Trigger: TGACAGAACCTTGTTCCGAAACACCAATGTGGAAGATGTTCTCAATGCTCGGAAATTGGAGAGAGACTCACTTCGGGATGAGTCCCAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS TCA 72 bp | CATCCCGAAGTGAGTCTCTCTCCAATTTCCGAGCATTaGGAACATCTTCCACATTGGTGTTTCGGAACAAGG | + |
|
Preference number: 6 (lower is better) Translates to: HPEVSLSPISEH*EHLPHWCFGTR Trigger: CCTTGTTCCGAAACACCAATGTGGAAGATGTTCTCAATGCTCGGAAATTGGAGAGAGACTCACTTCGGGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS TCA 72 bp | TCGGAACAAGGTTCTGTCAGAACTGACGTTTGCTGTTaGGGCACCCGCATCATCTTTCTTATCTGCTTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: SEQGSVRTDVCC*GTRIIFLICFS Trigger: ACTGAAGCAGATAAGAAAGATGATGCGGGTGCCTCAACAGCAAACGTCAGTTCTGACAGAACCTTGTTCCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164506.3 |
||
| CDS CAA 72 bp | TCATCCCGAAGTGAGTCTCTCTCCAATTTCCGAGCATaGAGAACATCTTCCACATTGGTGTTTCGGAACAAG | + |
|
Preference number: 6 (lower is better) Translates to: SSRSESLSNFRA*RTSSTLVFRNK Trigger: CTTGTTCCGAAACACCAATGTGGAAGATGTTCTCAATGCTCGGAAATTGGAGAGAGACTCACTTCGGGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
||
| CDS TCA 72 bp | TTCCTTTTTGACTTTGGTGGTGACATCCCGTGTTTCTaGCCATCGCTCCACAATTTCCTTACAGATATCAAG | + |
|
Preference number: 6 (lower is better) Translates to: FLFDFGGDIPCF*PSLHNFLTDIK Trigger: CTTGATATCTGTAAGGAAATTGTGGAGCGATGGTCAGAAACACGGGATGTCACCACCAAAGTCAAAAAGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092569.13 ENSMUST00000164506.3 |
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