Pregenerated sensors for CCDC39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027676Ensembl transcript IDs: ENSMUST00000029222.8
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACCTGCTTATTTCCCTCTaGTTTGTCACATGTGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYLLISL*FVTCGL Trigger: CAAGCCACATGTGACAAAGCAGAGGGAAATAAGCAG...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACTTGTCACATGTGGCTTaGCTAAGGTTCTGCAGTTTT | + |
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Preference number: 2 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYLSHVA*LRFCSF Trigger: AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAA...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR TCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTCCCCTTAAAAACATCTaGAGAATACAGTTGTTCGCT | + |
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Preference number: 2 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFPLKNI*RIQLFA Trigger: AGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGG...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACCAAATAAACAAAAGATaGTCTTTCCCAAGCTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYQINKR*SFPSSS Trigger: GGAGGAGCTTGGGAAAGACCATCTTTTGTTTATTTG...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTATTTGCATCATTAATAAATaGAGCCCCAGAAAAAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: SLMLTPLKTSEEYSCSLICIINK*SPRKRE Trigger: CTCTCTTTTTCTGGGGCTTCATTTATTAATGATGCA...AATAAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR GCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACTACAGAACTTTTGTCTaGTCTGTACTTTTGGTAGTA | + |
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Preference number: 2 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYYRTFV*SVLLVV Trigger: TACTACCAAAAGTACAGAGCAGACAAAAGTTCTGTA...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR CAA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTTTATTTCCCTCTGCTTaGTCACATGTGGCTTGGCTA | + |
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Preference number: 3 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLLFPSA*SHVAWL Trigger: TAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAA...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACTTTGTCACATGTGGCTaGGCTAAGGTTCTGCAGTTT | + |
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Preference number: 3 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYFVTCG*AKVLQF Trigger: AAACTGCAGAACCTTAGCCAAGCCACATGTGACAAA...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTAACACAAAACTCCCTTaGTTCTTTTCTCAGACAGCT | + |
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Preference number: 3 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFNTKLP*FFSQTA Trigger: AGCTGTCTGAGAAAAGAACAAAGGGAGTTTTGTGTT...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| 3UTR TCA 72 bp | TCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATaGTGCTGTGTTTTGGTTACACATTATAAACAGTAC | + |
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Preference number: 3 (lower is better) Translates to: SFLLNFFLREWE*CCVLVTHYKQY Trigger: GTACTGTTTATAATGTGTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTAGGATCTTGTTCTCCTaGTTGGCCACGGGGATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFRILFS*LATGMA Trigger: CGCCATCCCCGTGGCCAATCAGGAGAACAAGATCCT...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGATTGGCCACGGGGATaGCGAACCCATCTTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFDWPRG*RTHLPS Trigger: ACTGGGAAGATGGGTTCGCCATCCCCGTGGCCAATC...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTTCCTTCTCCAGCAGTTaGGTCTCATTCTTGACTCGG | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFSFSSS*VSFLTR Trigger: CCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGA...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCCGGAGCTTTGCCAACTaGTCCTCCAGGATCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLRSFAN*SSRILF Trigger: GAACAAGATCCTGGAGGATCAGTTGGCAAAGCTCCG...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTTGGTCCCAGTTCATCTaGCATTTCAAGTCATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFWSQFI*HFKSSS Trigger: GCTGGATGACTTGAAATGTCAGATGAACTGGGACCA...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACGTGTTCTCCCACTGCTaGATGAGCTCCTGCCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYVFSHC*MSSCRS Trigger: AGAACGGCAGGAGCTCATTCAGCAGTGGGAGAACAC...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACGAGTCACTGTCTTTGTaGGCCGATTCTTCCAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYESLSL*ADSSSQ Trigger: CTGGCTGGAAGAATCGGCTCACAAAGACAGTGACTC...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTATTTCCCGCCTCTGCATCTaGTCAATGGTGTTCTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: SLMLTPLKTSEEYSCSLISRLCI*SMVFSH Trigger: GTGGGAGAACACCATTGAGCAGATGCAGAGGCGGGA...AATAAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCTCAGCTGACTTCTGTTaGCTTCGTGACGCTGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLSADFC*LRDAGS Trigger: ACTACCAGCGTCACGAAGGCAACAGAAGTCAGCTGA...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTTCTGCATCTGCTCAATaGTGTTCTCCCACTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLSASAQ*CSPTAE Trigger: TTCAGCAGTGGGAGAACACCATTGAGCAGATGCAGA...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTTGGAGCTTCTTGATCTaGGATTCCAAAAGGGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFWSFLI*DSKRES Trigger: ACTTTCCCTTTTGGAATCCCAGATCAAGAAGCTCCA...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGAAAGGGAGGAAGACTaGGAAGAAGATCTCGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFEREED*EEDLEL Trigger: GAGCTCGAGATCTTCTTCCCAGTCTTCCTCCCTTTC...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTCGAGCACGTTTAACTTaGAGCTTTAAAAGATTGTCC | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFRARLT*SFKRLS Trigger: GGACAATCTTTTAAAGCTTCAAGTTAAACGTGCTCG...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCACTGCCACTACTAGCTaGCCTAGAACTGTCATTTGT | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLTATTS*PRTVIC Trigger: ACAAATGACAGTTCTAGGTCAGCTAGTAGTGGCAGT...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTAACCCATCTTCCCAGTaGAGCTCTGACAAGAACTCA | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFNPSSQ*SSDKNS Trigger: TGAGTTCTTGTCAGAGCTGCACTGGGAAGATGGGTT...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGTCAGCTTTTCTAACTaGAGAGTCAGGGCCCTGATT | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFVSFSN*RVRALI Trigger: AATCAGGGCCCTGACTCTGCAGTTAGAAAAGCTGAC...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCTCACAGCTTTGGCTTTaGTCAGTTCCTTCTCAGATC | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLSQLWL*SVPSQI Trigger: GATCTGAGAAGGAACTGAGCAAAGCCAAAGCTGTGA...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACGGACTTCCTCTGCCTTaGTGTAAAGCAATTCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYGLPLP*CKAILE Trigger: CTCGAGAATTGCTTTACAGCAAGGCAGAGGAAGTCC...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCTCTCTTCCATGTCTTTaGCCAGCTGCTGTTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLSLPCL*PAAVSF Trigger: AAAGGAAACAGCAGCTGGGCAAAGACATGGAAGAGA...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTCAGCTGTTAAGTACTTaGAAGGTGTTTTGCAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFQLLST*KVFCKA Trigger: TGCTTTGCAAAACACCTTGCAAGTACTTAACAGCTG...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTAGAACTGTCATTTGTTaGTGGAGGAGGCTCTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFRTVIC*WRRLWE Trigger: TTCCCAGAGCCTCCTCCAGCAACAAATGACAGTTCT...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCCCTCTTTCACAGCTTTaGCTTTGCTCAGTTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLPLSQL*LCSVPS Trigger: AGAAGGAACTGAGCAAAGCCAAAGCTGTGAAAGAGG...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTACTGTCATTTGTTGCTaGAGGAGGCTCTGGGAATCT | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFTVICC*RRLWES Trigger: AGATTCCCAGAGCCTCCTCCAGCAACAAATGACAGT...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTGGTTCCTTCAATTTCTaGTACCAGGGCTTTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLGSFNF*YQGFLF Trigger: AAAGAGAAAGCCCTGGTATCAGAAATTGAAGGAACC...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACCATTATGGAGCTTCTTaGTCTGGGATTCCAAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYHYGAS*SGIPKG Trigger: CCCTTTTGGAATCCCAGATCAAGAAGCTCCATAATG...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACTGGTCAATGTCCTTGTaGAACTGTATGATCTCACGG | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYWSMSL*NCMISR Trigger: CCGTGAGATCATACAGTTTCACAAGGACATTGACCA...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTTTAATCGTGACATTCTaGGTTCTACTTGCTGAATGT | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFLIVTF*VLLAEC Trigger: ACATTCAGCAAGTAGAACGCAGAATGTCACGATTAA...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTGATGGCATGAATTTCTaGATTTTCCATGGCATTAAC | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFDGMNF*IFHGIN Trigger: GTTAATGCCATGGAAAATGCAGAAATTCATGCCATC...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACATATTGTTTTCCATTTaGCTCTTGCGCTCCCGGATG | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYILFSI*LLRSRM Trigger: CATCCGGGAGCGCAAGAGCCAAATGGAAAACAATAT...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTCTGATCTTGCAAGTTTaGTTTTTCCTCTCGGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFLILQV*FFLSEL Trigger: AAGCTCCGAGAGGAAAAATCAAACTTGCAAGATCAG...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR TCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACCATTTTCCAGAAACTTaGTCTTCTCTTTCACCACGC | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYHFPET*SSLSPR Trigger: GCGTGGTGAAAGAGAAGATCAAGTTTCTGGAAAATG...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACAGAAAGGACTTCCTCTaGCTTGCTGTAAAGCAATTC | + |
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Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYRKDFL*LAVKQF Trigger: GAATTGCTTTACAGCAAGGCAGAGGAAGTCCTTTCT...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CCA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTTCGTTCTGTAACTCTTaGACTTTCTTAAATAACACG | + |
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Preference number: 4 (lower is better) Translates to: CLFPSALSHVAWLRFCSFSFCNS*TFLNNT Trigger: CGTGTTATTTAAGAAAGTCCAAGAGTTACAGAACGA...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTATTGATCTCACTCTCCCTTaGTTTGTAAAGAGACTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SLMLTPLKTSEEYSCSLIDLTLP*FVKRLC Trigger: ACACAGTCTCTTTACAAAGCAAGGGAGAGTGAGATC...AATAAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCTTTTCTCTTGCTTCCTaGTTTATTCGTGATAATGCC | + |
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Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLFSLAS*FIRDNA Trigger: GGCATTATCACGAATAAAGCAGGAAGCAAGAGAAAA...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR GCA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTCTGTACATAATTTCCTaGTGCTTCAGGGTTTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLLYIIS*CFRVSK Trigger: TTTTGAAACCCTGAAGCAGCAGGAAATTATGTACAG...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR GCA 90 bp | TCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTATTATGTCTTTGCCCAGCTaGTGTTTCCTTTTCTCTAGA | + |
|
Preference number: 4 (lower is better) Translates to: SLMLTPLKTSEEYSCSLIMSLPS*CFLFSR Trigger: TCTAGAGAAAAGGAAACAGCAGCTGGGCAAAGACAT...AATAAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR GCA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCGTAAGCATGGCTTTGTaGACTTTAATTTCTTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LFFSQTALIATVQNFCLLVSMAL*TLISSA Trigger: AGCTGAAGAAATTAAAGTGCACAAAGCCATGCTTAC...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR GCA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACAAGTTCAAGGATTTTTaGTTCAAGGGCTTGCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYKFKDF*FKGLLF Trigger: GAAAAGCAAGCCCTTGAAGCAAAAATCCTTGAACTT...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR GCA 90 bp | TCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTATTTTTGCTTCAAGGGCTTaGTTTTCCTCTGAATTAATT | + |
|
Preference number: 4 (lower is better) Translates to: SLMLTPLKTSEEYSCSLIFASRA*FSSELI Trigger: AATTAATTCAGAGGAAAAGCAAGCCCTTGAAGCAAA...AATAAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CCA 90 bp | CTCGGAGCTTTGCCAACTGATCCTCCAGGATCTTGTTCTCCTGATTaGCCACGGGGATGGCGAACCCATCTTCCCAGTGCAGCTCTGACA | + |
|
Preference number: 5 (lower is better) Translates to: LGALPTDPPGSCSPD*PRGWRTHLPSAALT Trigger: TGTCAGAGCTGCACTGGGAAGATGGGTTCGCCATCCCCGTGGCCAATCAGGAGAACAAGATCCTGGAGGATCAGTTGGCAAAGCTCCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CCA 90 bp | CCAACTGATCCTCCAGGATCTTGTTCTCCTGATTGGCCACGGGGATaGCGAACCCATCTTCCCAGTGCAGCTCTGACAAGAACTCACTGC | + |
|
Preference number: 5 (lower is better) Translates to: PTDPPGSCSPDWPRG*RTHLPSAALTRTHC Trigger: GCAGTGAGTTCTTGTCAGAGCTGCACTGGGAAGATGGGTTCGCCATCCCCGTGGCCAATCAGGAGAACAAGATCCTGGAGGATCAGTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 90 bp | GATCCCGCCTCTGCATCTGCTCAATGGTGTTCTCCCACTGCTGAATaGGCTCCTGCCGTTCTAAGTGAATCTTCCGGAAATCCTGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: DPASASAQWCSPTAE*APAVLSESSGNPVQ Trigger: CTGCACAGGATTTCCGGAAGATTCACTTAGAACGGCAGGAGCTCATTCAGCAGTGGGAGAACACCATTGAGCAGATGCAGAGGCGGGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTCCAGGCCTCCAAGGCTaGCTGGTCCCAGTTCATCTG | + |
|
Preference number: 5 (lower is better) Translates to: CLFPSALSHVAWLRFCSFPGLQG*LVPVHL Trigger: CAGATGAACTGGGACCAGCAAGCCTTGGAGGCCTGG...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS GCA 90 bp | CCTTCAGCTGACTTCTGTTGCCTTCGTGACGCTGGTAGTCCATCCTaGACTTGGACACTTTCCGCTCAGCAACAGAAATTTTTCTCTCGT | + |
|
Preference number: 5 (lower is better) Translates to: PSADFCCLRDAGSPS*TWTLSAQQQKFFSR Trigger: ACGAGAGAAAAATTTCTGTTGCTGAGCGGAAAGTGTCCAAGTGCAGGATGGACTACCAGCGTCACGAAGGCAACAGAAGTCAGCTGAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS GCA 90 bp | GAGTGGTTTTTAAAGTATCCAGCTCATCCTTCAGCTGACTTCTGTTaGCTTCGTGACGCTGGTAGTCCATCCTGCACTTGGACACTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: EWFLKYPAHPSADFC*LRDAGSPSCTWTLS Trigger: GGAAAGTGTCCAAGTGCAGGATGGACTACCAGCGTCACGAAGGCAACAGAAGTCAGCTGAAGGATGAGCTGGATACTTTAAAAACCACTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 90 bp | CGTTATACTCCATGGTCAGCTTTTCTAACTGCAGAGTCAGGGCCCTaGTTTTGTTATCGTCTTGCTGAGAGTACTTCTGAAGGGTCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: RYTPWSAFLTAESGP*FCYRLAESTSEGSE Trigger: CTCTGACCCTTCAGAAGTACTCTCAGCAAGACGATAACAAAATCAGGGCCCTGACTCTGCAGTTAGAAAAGCTGACCATGGAGTATAACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACCTCCTTCTCCAGCAGTaGGGTCTCATTCTTGACTCG | + |
|
Preference number: 5 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYLLLQQ*GLILDS Trigger: CGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAG...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCCGATCTCACTCTCCCTaGCTTTGTAAAGAGACTGTG | + |
|
Preference number: 5 (lower is better) Translates to: LFFSQTALIATVQNFCLLRSHSP*LCKETV Trigger: CACAGTCTCTTTACAAAGCAAGGGAGAGTGAGATCG...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TGCTTATTTCCCTCTGCTTTGTCACATGTGGCTTGGCTAAGGTTCTGCAGTTTTTTTTACTATGCCCAATaGAACCTCCACTTCCTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: CLFPSALSHVAWLRFCSFFYYAQ*NLHFLQ Trigger: CTGAAGGAAGTGGAGGTTCAATTGGGCATAGTAAAA...AAAACTGCAGAACCTTAGCCAAGCCACATGTGACAAAGCAGAGGGAAATAAGCA 43% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTGCTGATCTTGCAAGTTaGATTTTTCCTCTCGGAGCT | + |
|
Preference number: 5 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLADLAS*IFPLGA Trigger: AGCTCCGAGAGGAAAAATCAAACTTGCAAGATCAGC...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTTTCACAGCTTTGGCTTaGCTCAGTTCCTTCTCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLFTALA*LSSFSD Trigger: ATCTGAGAAGGAACTGAGCAAAGCCAAAGCTGTGAA...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 90 bp | TGGAAATGTTTTTCCTCAGAGCTTGTAAGTCACTGGATGTTCTGTTaGGAGTGGTTTTTAAAGTATCCAGCTCATCCTTCAGCTGACTTC | + |
|
Preference number: 5 (lower is better) Translates to: WKCFSSELVSHWMFC*EWFLKYPAHPSADF Trigger: GAAGTCAGCTGAAGGATGAGCTGGATACTTTAAAAACCACTCTCAACAGAACATCCAGTGACTTACAAGCTCTGAGGAAAAACATTTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCTCATTATGGAGCTTCTaGATCTGGGATTCCAAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: LFFSQTALIATVQNFCLLSLWSF*IWDSKR Trigger: CCTTTTGGAATCCCAGATCAAGAAGCTCCATAATGA...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGCTCTGGATATCTTCTaGAAGTTCTCTGATCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFALDIF*KFSDLP Trigger: AGGCAGATCAGAGAACTTCAAGAAGATATCCAGAGC...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 90 bp | TTCTCTCGTATTCTATGTTGTTCTCAACCTCATTTTCCAGAAACTTaGTCTTCTCTTTCACCACGCCTTCTTTTTCTCTTGCTTCCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: FSRILCCSQPHFPET*SSLSPRLLFLLLPA Trigger: AGCAGGAAGCAAGAGAAAAAGAAGGCGTGGTGAAAGAGAAGATCAAGTTTCTGGAAAATGAGGTTGAGAACAACATAGAATACGAGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 90 bp | ATTCGCTGCAATTTCGGCTTCTGCTCCTCAGTCTCCTTACGAAGTTaGAATGCAAGTGTTTGTTTCTCTGTTAATTTCTCTTTGGCATTA | + |
|
Preference number: 5 (lower is better) Translates to: IRCNFGFCSSVSLRS*NASVCFSVNFSLAL Trigger: TAATGCCAAAGAGAAATTAACAGAGAAACAAACACTTGCATTTCAACTTCGTAAGGAGACTGAGGAGCAGAAGCCGAAATTGCAGCGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCAGCATGTCTTCCATGTaGGTAGCTTTCTCTTCAATA | + |
|
Preference number: 5 (lower is better) Translates to: LFFSQTALIATVQNFCLLSMSSM*VAFSSI Trigger: TATTGAAGAGAAAGCTACCAACATGGAAGACATGCT...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TCCTCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTGAGGTAAGCATGGCTTaGTGCACTTTAATTTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SSLMLTPLKTSEEYSCSLEVSMA*CTLISS Trigger: TGAAGAAATTAAAGTGCACAAAGCCATGCTTACCTC...AAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGAGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CAA 90 bp | TTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTGGTTACTTCTCTGATCTGCCTTaGTTTGCATCTGTATCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: FLTKLFPEGVGMMLCFGYFSDLP*FASVSL Trigger: GAGAGATACAGATGCAAACAAAGGCAGATCAGAGAA...GTAACCAAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CAA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCAGTTTGTGTAACTGTTaGTTAAGATGTTTCAGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: LFFSQTALIATVQNFCLLSLCNC*LRCFRE Trigger: CTCCCTGAAACATCTTAACAAACAGTTACACAAACT...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS-3UTR CAA 90 bp | TCCCTCATGTTAACCCCCTTAAAAACATCTGAAGAATACAGTTGTTCGCTTATTCTGATCTGCCTTTGTTaGCATCTGTATCTCTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: SLMLTPLKTSEEYSCSLILICLC*HLYLSS Trigger: AGATGAGAGATACAGATGCAAACAAAGGCAGATCAG...AATAAGCGAACAACTGTATTCTTCAGATGTTTTTAAGGGGGTTAACATGAGGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CAA 90 bp | TTGTTCTTTTCTCAGACAGCTCTTATAGCCACTGTACAGAACTTTTGTCTGCTCAGTCTCCTTACGAAGTaGAAATGCAAGTGTTTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: LFFSQTALIATVQNFCLLSLLTK*KCKCLF Trigger: AAACAAACACTTGCATTTCAACTTCGTAAGGAGACT...GAGCAGACAAAAGTTCTGTACAGTGGCTATAAGAGCTGTCTGAGAAAAGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS-3UTR CAA 90 bp | AGTGTCTTTCTTACTAAACTTTTTCCTGAGGGAGTGGGAATGATGCTGTGTTTTTCACTGGATGTTCTGTaGAGAGTGGTTTTTAAAGTA | + |
|
Preference number: 5 (lower is better) Translates to: SVFLTKLFPEGVGMMLCFSLDVL*RVVFKV Trigger: TACTTTAAAAACCACTCTCAACAGAACATCCAGTGA...AAAACACAGCATCATTCCCACTCCCTCAGGAAAAAGTTTAGTAAGAAAGACACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | GCGCTCCCGGATGATCGCCATCTCCTTCTCCAGCAGTaGGGTCTCATTCTTGACTCGGCCCAGCTCTCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: ALPDDRHLLLQQ*GLILDSAQLSF Trigger: GAAAGAGAGCTGGGCCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAGATGGCGATCATCCGGGAGCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS CAA 90 bp | TTGGCTCTTGCGCTCCCGGATGATCGCCATCTCCTTCTCCAGCAGTaGGGTCTCATTCTTGACTCGGCCCAGCTCTCTTTCAGCAATGGC | + |
|
Preference number: 6 (lower is better) Translates to: LALALPDDRHLLLQQ*GLILDSAQLSFSNG Trigger: GCCATTGCTGAAAGAGAGCTGGGCCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAGATGGCGATCATCCGGGAGCGCAAGAGCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CCA 72 bp | CCTCCAGGATCTTGTTCTCCTGATTGGCCACGGGGATaGCGAACCCATCTTCCCAGTGCAGCTCTGACAAGA | + |
|
Preference number: 6 (lower is better) Translates to: PPGSCSPDWPRG*RTHLPSAALTR Trigger: TCTTGTCAGAGCTGCACTGGGAAGATGGGTTCGCCATCCCCGTGGCCAATCAGGAGAACAAGATCCTGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CCA 72 bp | CGCTCCCGGATGATCGCCATCTCCTTCTCCAGCAGTTaGGTCTCATTCTTGACTCGGCCCAGCTCTCTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: RSRMIAISFSSS*VSFLTRPSSLS Trigger: TGAAAGAGAGCTGGGCCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAGATGGCGATCATCCGGGAGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS CCA 72 bp | TTGCCAACTGATCCTCCAGGATCTTGTTCTCCTGATTaGCCACGGGGATGGCGAACCCATCTTCCCAGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: LPTDPPGSCSPD*PRGWRTHLPSA Trigger: TGCACTGGGAAGATGGGTTCGCCATCCCCGTGGCCAATCAGGAGAACAAGATCCTGGAGGATCAGTTGGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | ATCGCCATCTCCTTCTCCAGCAGTTGGGTCTCATTCTaGACTCGGCCCAGCTCTCTTTCAGCAATGGCCTTA | + |
|
Preference number: 6 (lower is better) Translates to: IAISFSSSWVSF*TRPSSLSAMAL Trigger: TAAGGCCATTGCTGAAAGAGAGCTGGGCCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAGATGGCGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 90 bp | TCCCGGATGATCGCCATCTCCTTCTCCAGCAGTTGGGTCTCATTCTaGACTCGGCCCAGCTCTCTTTCAGCAATGGCCTTAAAATGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: SRMIAISFSSSWVSF*TRPSSLSAMALKCS Trigger: AGAACATTTTAAGGCCATTGCTGAAAGAGAGCTGGGCCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAGATGGCGATCATCCGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS GCA 72 bp | TTAAAGTATCCAGCTCATCCTTCAGCTGACTTCTGTTaGCTTCGTGACGCTGGTAGTCCATCCTGCACTTGG | + |
|
Preference number: 6 (lower is better) Translates to: LKYPAHPSADFC*LRDAGSPSCTW Trigger: CCAAGTGCAGGATGGACTACCAGCGTCACGAAGGCAACAGAAGTCAGCTGAAGGATGAGCTGGATACTTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 72 bp | TCTGCATCTGCTCAATGGTGTTCTCCCACTGCTGAATaGGCTCCTGCCGTTCTAAGTGAATCTTCCGGAAAT | + |
|
Preference number: 6 (lower is better) Translates to: SASAQWCSPTAE*APAVLSESSGN Trigger: ATTTCCGGAAGATTCACTTAGAACGGCAGGAGCTCATTCAGCAGTGGGAGAACACCATTGAGCAGATGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 72 bp | CCATGGTCAGCTTTTCTAACTGCAGAGTCAGGGCCCTaGTTTTGTTATCGTCTTGCTGAGAGTACTTCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: PWSAFLTAESGP*FCYRLAESTSE Trigger: TTCAGAAGTACTCTCAGCAAGACGATAACAAAATCAGGGCCCTGACTCTGCAGTTAGAAAAGCTGACCATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS GCA 72 bp | CTCTTCTCGTTATACTCCATGGTCAGCTTTTCTAACTaGAGAGTCAGGGCCCTGATTTTGTTATCGTCTTGC | + |
|
Preference number: 6 (lower is better) Translates to: LFSLYSMVSFSN*RVRALILLSSC Trigger: GCAAGACGATAACAAAATCAGGGCCCTGACTCTGCAGTTAGAAAAGCTGACCATGGAGTATAACGAGAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | AGGCCTTTCTCCTCCTCCTTCAGCATGTCTTCCATGTaGGTAGCTTTCTCTTCAATAGATAGGGTCTTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: RPFSSSFSMSSM*VAFSSIDRVFS Trigger: TGAGAAGACCCTATCTATTGAAGAGAAAGCTACCAACATGGAAGACATGCTGAAGGAGGAGGAGAAAGGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 90 bp | TTTCGCTGCTGTTCAACACATCTGATCTGTGAGGTAAGCATGGCTTaGTGCACTTTAATTTCTTCAGCTCTCTCTTCCATGTCTTTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: FRCCSTHLICEVSMA*CTLISSALSSMSLP Trigger: GGGCAAAGACATGGAAGAGAGAGCTGAAGAAATTAAAGTGCACAAAGCCATGCTTACCTCACAGATCAGATGTGTTGAACAGCAGCGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS GCA 72 bp | TTCAAAATGCGGATTTCTCTTCTGAGTCTTCCACACTaGTTAGTTATTCGCTGCAATTTCGGCTTCTGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: FKMRISLLSLPH*LVIRCNFGFCS Trigger: GGAGCAGAAGCCGAAATTGCAGCGAATAACTAAGCAGTGTGGAAGACTCAGAAGAGAAATCCGCATTTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS TCA 72 bp | ACTTTCTTAAATAACACGTCTTTTACTATGCCCAATTaGACCTCCACTTCCTTCAGGCCTTTCTCCTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: TFLNNTSFTMPN*TSTSFRPFSSS Trigger: GGAGGAGGAGAAAGGCCTGAAGGAAGTGGAGGTTCAATTGGGCATAGTAAAAGACGTGTTATTTAAGAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | TTCGTTCTTCATAGTCATGAAGCTGATCTTGCAAGTTaGATTTTTCCTCTCGGAGCTTTGCCAACTGATCCT | + |
|
Preference number: 6 (lower is better) Translates to: FVLHSHEADLAS*IFPLGALPTDP Trigger: AGGATCAGTTGGCAAAGCTCCGAGAGGAAAAATCAAACTTGCAAGATCAGCTTCATGACTATGAAGAACGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | TCCTCGATCATCATATCCTCTTTCACAGCTTTGGCTTaGCTCAGTTCCTTCTCAGATCTGTCAATAAAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SSIIISSFTALA*LSSFSDLSIKR Trigger: CCTTTTTATTGACAGATCTGAGAAGGAACTGAGCAAAGCCAAAGCTGTGAAAGAGGATATGATGATCGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | AGATTGTCCTCGATCATCATATCCTCTTTCACAGCTTaGGCTTTGCTCAGTTCCTTCTCAGATCTGTCAATA | + |
|
Preference number: 6 (lower is better) Translates to: RLSSIIISSFTA*ALLSSFSDLSI Trigger: TATTGACAGATCTGAGAAGGAACTGAGCAAAGCCAAAGCTGTGAAAGAGGATATGATGATCGAGGACAATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 72 bp | TGTTCAACACATCTGATCTGTGAGGTAAGCATGGCTTaGTGCACTTTAATTTCTTCAGCTCTCTCTTCCATG | + |
|
Preference number: 6 (lower is better) Translates to: CSTHLICEVSMA*CTLISSALSSM Trigger: CATGGAAGAGAGAGCTGAAGAAATTAAAGTGCACAAAGCCATGCTTACCTCACAGATCAGATGTGTTGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
||
| CDS CAA 90 bp | ATTTCCTGCTGCTTCAGGGTTTCAAAATCCAGTTTGTGTAACTGTTaGTTAAGATGTTTCAGGGAGGAACGGGTTCCTTCAATTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: ISCCFRVSKSSLCNC*LRCFREERVPSISD Trigger: ATCAGAAATTGAAGGAACCCGTTCCTCCCTGAAACATCTTAACAAACAGTTACACAAACTGGATTTTGAAACCCTGAAGCAGCAGGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS TCA 72 bp | TTTTCCTCAGAGCTTGTAAGTCACTGGATGTTCTGTTaGGAGTGGTTTTTAAAGTATCCAGCTCATCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: FSSELVSHWMFC*EWFLKYPAHPS Trigger: TGAAGGATGAGCTGGATACTTTAAAAACCACTCTCAACAGAACATCCAGTGACTTACAAGCTCTGAGGAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS CCA 72 bp | AGGGCTTTCTCTTTCGCTATCTCGTTCTGTAACTCTTaGACTTTCTTAAATAACACGTCTTTTACTATGCCC | + |
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Preference number: 6 (lower is better) Translates to: RAFSFAISFCNS*TFLNNTSFTMP Trigger: GGGCATAGTAAAAGACGTGTTATTTAAGAAAGTCCAAGAGTTACAGAACGAGATAGCGAAAGAGAAAGCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS CAA 72 bp | ATAATTTCCTGCTGCTTCAGGGTTTCAAAATCCAGTTaGTGTAACTGTTTGTTAAGATGTTTCAGGGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: IISCCFRVSKSS*CNCLLRCFREE Trigger: TTCCTCCCTGAAACATCTTAACAAACAGTTACACAAACTGGATTTTGAAACCCTGAAGCAGCAGGAAATTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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| CDS TCA 72 bp | CTATTCTTAAGCTTATCAATTTTACTTAGCCGCTCATaGAATTCAGAACTCATAGTTTTTCGCTGCTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LFLSLSILLSRS*NSELIVFRCCS Trigger: TGAACAGCAGCGAAAAACTATGAGTTCTGAATTTCATGAGCGGCTAAGTAAAATTGATAAGCTTAAGAATAG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029222.8 |
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