Pregenerated sensors for CCDC34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027160Ensembl transcript IDs: ENSMUST00000028580.12, ENSMUST00000127630.8, ENSMUST00000150183.9
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAGTGATCCTGTTTCCTCCCGTCTCCTGGCTCTCTCTGGGTCGGTaGCATCTTCCCTCCACAACTAGGTCCCTGGGTAGCCCAAAGTCA | + |
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Preference number: 1 (lower is better) Translates to: PVILFPPVSWLSLGR*HLPSTTRSLGSPKS Trigger: TGACTTTGGGCTACCCAGGGACCTAGTTGTGGAGGGAAGATGGCACCGACCCAGAGAGAGCCAGGAGACGGGAGGAAACAGGATCACTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR GCA 90 bp | TTCTGGGCACAGCTTACTGACAGCACCATCTACTTTGCCTTTTTGTaGAGGTTATATGGATCCTGCACCGCTCATTACAAAGGTCTGCAC | + |
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Preference number: 1 (lower is better) Translates to: FWAQLTDSTIYFAFL*RLYGSCTAHYKGLH Trigger: GTGCAGACCTTTGTAATGAGCGGTGCAGGATCCATATAACCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGCCCAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR TCA 90 bp | TATAGCATCTTGCCCTGGCATCAAGAAACGCTGACTCAGAGTGGCTaGAAGTGCATTGGTGTGGCCACATTCAGGGACCGTTTAAAAATT | + |
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Preference number: 1 (lower is better) Translates to: YSILPWHQETLTQSG*KCIGVATFRDRLKI Trigger: AATTTTTAAACGGTCCCTGAATGTGGCCACACCAATGCACTTTCAGCCACTCTGAGTCAGCGTTTCTTGATGCCAGGGCAAGATGCTATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR GCA 90 bp | TATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTaGACACACTCTATCTCTGTCCTCGGCACAGAGCTCCAAGGCAAA | + |
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Preference number: 1 (lower is better) Translates to: YSDFKCKLRVARYAL*THSISVLGTELQGK Trigger: TTTGCCTTGGAGCTCTGTGCCGAGGACAGAGATAGAGTGTGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 90 bp | CTTTCCGGGTCCACTCTTAGCTTCCTTAGGAGGGGGCATATGAATTaGCTTCCAAGGAATTGGGTTATAAAAAGTTGGTTCTGGGTAGGA | + |
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Preference number: 1 (lower is better) Translates to: LSGSTLSFLRRGHMN*LPRNWVIKSWFWVG Trigger: TCCTACCCAGAACCAACTTTTTATAACCCAATTCCTTGGAAGCCAATTCATATGCCCCCTCCTAAGGAAGCTAAGAGTGGACCCGGAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 90 bp | CGTGAACTCTTCAAGGGTATAATTTCGGCCAGGAAAGAATATACTTaGCCAAAGGCAACACTTTCAACTTTATGCCTTTTCTTTCCCTTC | + |
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Preference number: 1 (lower is better) Translates to: RELFKGIISARKEYT*PKATLSTLCLFFPF Trigger: GAAGGGAAAGAAAAGGCATAAAGTTGAAAGTGTTGCCTTTGGCCAAGTATATTCTTTCCTGGCCGAAATTATACCCTTGAAGAGTTCACG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR TCA 90 bp | ACAAAGGTCTGCACGTTTAAAGGATTAAATATTTGGATGACTGCTTaGGAGTATTCCTTCAAAGATATTTCTCTCAGAAGAGGCAGATCA | + |
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Preference number: 1 (lower is better) Translates to: TKVCTFKGLNIWMTA*EYSFKDISLRRGRS Trigger: TGATCTGCCTCTTCTGAGAGAAATATCTTTGAAGGAATACTCTCAAGCAGTCATCCAAATATTTAATCCTTTAAACGTGCAGACCTTTGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | CACTTCTGGGCACAGCTTACTGACAGCACCATCTACTTTGCCTTTTTGTGCAGGTTTCCTCCCGTCTCCTaGCTCTCTCTGGGTCGGTGC | + |
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Preference number: 2 (lower is better) Translates to: HFWAQLTDSTIYFAFLCRFPPVS*LSLGRC Trigger: GCACCGACCCAGAGAGAGCCAGGAGACGGGAGGAAA...CCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGCCCAGAAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | GCTCTTTCTGACCATCTCAATTTCCACATGAGACGGCAAGTCCCGGAGAGTTTGTCTCCTGGCTCTCTCTaGGTCGGTGCCATCTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: ALSDHLNFHMRRQVPESLSPGSL*VGAIFP Trigger: AGGGAAGATGGCACCGACCCAGAGAGAGCCAGGAGA...CAAACTCTCCGGGACTTGCCGTCTCATGTGGAAATTGAGATGGTCAGAAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | CCACATGAGACGGCAAGTCCCGGAGAGTTTGTTCAGGAATTTGCCCTTTCTGGGCCACAACTAGGTCCCTaGGTAGCCCAAAGTCAAACT | + |
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Preference number: 2 (lower is better) Translates to: PHETASPGEFVQEFALSGPQLGP*VAQSQT Trigger: AGTTTGACTTTGGGCTACCCAGGGACCTAGTTGTGG...CCCAGAAAGGGCAAATTCCTGAACAAACTCTCCGGGACTTGCCGTCTCATGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | GACGGCAAGTCCCGGAGAGTTTGTTCAGGAATTTGCCCTTTCTGGGTATTCAGTGAAAGTGCATTGGTGTaGCCACATTCAGGGACCGTT | + |
|
Preference number: 2 (lower is better) Translates to: DGKSRRVCSGICPFWVFSESALV*PHSGTV Trigger: AACGGTCCCTGAATGTGGCCACACCAATGCACTTTC...ACTGAATACCCAGAAAGGGCAAATTCCTGAACAAACTCTCCGGGACTTGCCGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | GCTCTTTCTGACCATCTCAATTTCCACATGAGACGGCAAGTCCCGGAGAGTTTGTGGCTGAAAGTGCATTaGTGTGGCCACATTCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: ALSDHLNFHMRRQVPESLWLKVH*CGHIQG Trigger: TCCCTGAATGTGGCCACACCAATGCACTTTCAGCCA...CAAACTCTCCGGGACTTGCCGTCTCATGTGGAAATTGAGATGGTCAGAAAGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR GCA 90 bp | GGAGATCTGACTCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTACGCACTCCATTTCTGTaGTGTTGTCGTAATTCCCAG | + |
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Preference number: 2 (lower is better) Translates to: GDLTHCKLASALHSHVIVRTPFL*CCRNSQ Trigger: CTGGGAATTACGACAACAGCACAGAAATGGAGTGCG...TACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGAGTCAGATCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGAAACCTGGAAATGGCTCTTTCTGACCATCTCAATTTCCACATGAGACGGCTCTCTCTGGGTCGGTaGCATCTTCCCTCCACAACT | + |
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Preference number: 2 (lower is better) Translates to: KRNLEMALSDHLNFHMRRLSLGR*HLPSTT Trigger: AGTTGTGGAGGGAAGATGGCACCGACCCAGAGAGAG...CCGTCTCATGTGGAAATTGAGATGGTCAGAAAGAGCCATTTCCAGGTTTCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | GGAGATCTGACTCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTAATGGGACAACTTTTCTaGTACAGGTGCTTGCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: GDLTHCKLASALHSHVIVMGQLF*YRCLLH Trigger: GTGCAGCAAGCACCTGTACCAGAAAAGTTGTCCCAT...TACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGAGTCAGATCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR CAA 90 bp | ATACTTCCCACTTCTGGGCACAGCTTACTGACAGCACCATCTACTTaGCCTTTTTGTGCAGGTTATATGGATCCTGCACCGCTCATTACA | + |
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Preference number: 2 (lower is better) Translates to: ILPTSGHSLLTAPST*PFCAGYMDPAPLIT Trigger: TGTAATGAGCGGTGCAGGATCCATATAACCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGCCCAGAAGTGGGAAGTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | ATGCTCTGTGCACACACTCTATCTCTGTCCTCGGCACAGAGCTCCAAGGCAAAGTGGCTTCCAAGGAATTaGGTTATAAAAAGTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: MLCAHTLSLSSAQSSKAKWLPRN*VIKSWF Trigger: GAACCAACTTTTTATAACCCAATTCCTTGGAAGCCA...CTTTGCCTTGGAGCTCTGTGCCGAGGACAGAGATAGAGTGTGTGCACAGAGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR-3UTR TCA 90 bp | GCACCGCTCATTACAAAGGTCTGCACGTTTAAAGGATTAAATATTTGGATGACTCTGACTCAGAGTGGCTaGAAGTGCATTGGTGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: APLITKVCTFKGLNIWMTLTQSG*KCIGVA Trigger: GGCCACACCAATGCACTTTCAGCCACTCTGAGTCAG...AGTCATCCAAATATTTAATCCTTTAAACGTGCAGACCTTTGTAATGAGCGGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR TCA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTATTAAGGAAACAGAACTaGAATGAAGCCATAATGGTG | + |
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Preference number: 2 (lower is better) Translates to: CLLHKSGDVSSILRMHTVLRKQN*NEAIMV Trigger: CACCATTATGGCTTCATTTCAGTTCTGTTTCCTTAA...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR-3UTR CCA 90 bp | AGCTTACTGACAGCACCATCTACTTTGCCTTTTTGTGCAGGTTATATGGATCCTAACGCTGACTCAGAGTaGCTGAAAGTGCATTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: SLLTAPSTLPFCAGYMDPNADSE*LKVHWC Trigger: ACACCAATGCACTTTCAGCCACTCTGAGTCAGCGTT...AGGATCCATATAACCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR GCA 90 bp | AAATATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTGCACACTTTTCTGGTACAGGTaGTTGCTGCACAAGTCTGGC | + |
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Preference number: 2 (lower is better) Translates to: KYSDFKCKLRVARYALCTLFWYR*LLHKSG Trigger: GCCAGACTTGTGCAGCAAGCACCTGTACCAGAAAAG...TGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR-3UTR CCA 90 bp | CTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGAAGTGCACAAGAAAGACTGTTaGTTTATTGATACTGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: LHKSGDVSSILRMHTVEVHKKDC*FIDTVV Trigger: CACTACAGTATCAATAAACCAACAGTCTTTCTTGTG...CACTTCTACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR CAA 90 bp | TTCTTTAAACTGGGAAGAAAATGTCCAGGCTCTCTAGAGAAATCTTaGAGGGCTGCTGACTTAAATGTGCACACACGTGAACTCTTCAAG | + |
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Preference number: 2 (lower is better) Translates to: FFKLGRKCPGSLEKS*RAADLNVHTRELFK Trigger: CTTGAAGAGTTCACGTGTGTGCACATTTAAGTCAGCAGCCCTCAAAGATTTCTCTAGAGAGCCTGGACATTTTCTTCCCAGTTTAAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | AAATATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTGCACAATGGGACAACTTTTCTaGTACAGGTGCTTGCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: KYSDFKCKLRVARYALCTMGQLF*YRCLLH Trigger: GTGCAGCAAGCACCTGTACCAGAAAAGTTGTCCCAT...TGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR-3UTR CCA 90 bp | AAATCTTTGAGGGCTGCTGACTTAAATGTGCACACACGTGAACTCTTCAAGGGTAAAGAAACCTGGAAATaGCTCTTTCTGACCATCTCA | + |
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Preference number: 2 (lower is better) Translates to: KSLRAADLNVHTRELFKGKETWK*LFLTIS Trigger: TGAGATGGTCAGAAAGAGCCATTTCCAGGTTTCTTT...ACCCTTGAAGAGTTCACGTGTGTGCACATTTAAGTCAGCAGCCCTCAAAGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGGAAGAAAATGTCCAGGCTCTCTAGAGAAATCTTTGAGGGCTGCTGACTTAAGGAAAGAATATACTTaGCCAAAGGCAACACTTTCA | + |
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Preference number: 2 (lower is better) Translates to: LGRKCPGSLEKSLRAADLRKEYT*PKATLS Trigger: TGAAAGTGTTGCCTTTGGCCAAGTATATTCTTTCCT...TAAGTCAGCAGCCCTCAAAGATTTCTCTAGAGAGCCTGGACATTTTCTTCCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACACACAAGAAAGACTGTTaGTTTATTGATACTGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: KLASALHSHVIVYACPHTHKKDC*FIDTVV Trigger: CACTACAGTATCAATAAACCAACAGTCTTTCTTGTG...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR-3UTR CCA 90 bp | AAATATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTGCACATCCACAGGGAACCAATaGGACAACTTTTCTGGTACA | + |
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Preference number: 2 (lower is better) Translates to: KYSDFKCKLRVARYALCTSTGNQ*DNFSGT Trigger: TGTACCAGAAAAGTTGTCCCATTGGTTCCCTGTGGA...TGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR-3UTR TCA 90 bp | AAATATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTGCACAGAAACAGAACTGAAATaGAGCCATAATGGTGGAATC | + |
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Preference number: 2 (lower is better) Translates to: KYSDFKCKLRVARYALCTETELK*SHNGGI Trigger: GATTCCACCATTATGGCTTCATTTCAGTTCTGTTTC...TGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR-3UTR CCA 90 bp | AAATATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTGCACAATAAAAAGTTGGTTCTaGGTAGGAATTTCCACTGTA | + |
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Preference number: 2 (lower is better) Translates to: KYSDFKCKLRVARYALCTIKSWF*VGISTV Trigger: TACAGTGGAAATTCCTACCCAGAACCAACTTTTTAT...TGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR GCA 72 bp | CTGTTTCCTCCCGTCTCCTGGCTCTCTCTGGGTCGGTaGCATCTTCCCTCCACAACTAGGTCCCTGGGTAGC | + |
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Preference number: 3 (lower is better) Translates to: LFPPVSWLSLGR*HLPSTTRSLGS Trigger: GCTACCCAGGGACCTAGTTGTGGAGGGAAGATGGCACCGACCCAGAGAGAGCCAGGAGACGGGAGGAAACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR TCA 72 bp | GCAAAGACTGCTCTTGGCATTATGAACTGCCAGGGATaGCGATGGGAGGGGCTGGCTCGCTGCATGTCGTTT | + |
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Preference number: 3 (lower is better) Translates to: AKTALGIMNCQG*RWEGLARCMSF Trigger: AAACGACATGCAGCGAGCCAGCCCCTCCCATCGTCATCCCTGGCAGTTCATAATGCCAAGAGCAGTCTTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 72 bp | ATTACATCACCAGTGATCCTGTTTCCTCCCGTCTCCTaGCTCTCTCTGGGTCGGTGCCATCTTCCCTCCACA | + |
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Preference number: 3 (lower is better) Translates to: ITSPVILFPPVS*LSLGRCHLPST Trigger: TGTGGAGGGAAGATGGCACCGACCCAGAGAGAGCCAGGAGACGGGAGGAAACAGGATCACTGGTGATGTAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR CCA 72 bp | AAGCACCTCCACAGGGAACCAATGGGACAACTTTTCTaGTACAGGTGCTTGCTGCACAAGTCTGGCGACGTG | + |
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Preference number: 3 (lower is better) Translates to: KHLHREPMGQLF*YRCLLHKSGDV Trigger: CACGTCGCCAGACTTGTGCAGCAAGCACCTGTACCAGAAAAGTTGTCCCATTGGTTCCCTGTGGAGGTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| 3UTR GCA 72 bp | ATCTCTGTCCTCGGCACAGAGCTCCAAGGCAAAGACTaGTCTTGGCATTATGAACTGCCAGGGATGACGATG | + |
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Preference number: 3 (lower is better) Translates to: ISVLGTELQGKD*SWHYELPGMTM Trigger: CATCGTCATCCCTGGCAGTTCATAATGCCAAGAGCAGTCTTTGCCTTGGAGCTCTGTGCCGAGGACAGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 72 bp | CATCTTGCCCTGGCATCAAGAAACGCTGACTCAGAGTaGCTGAAAGTGCATTGGTGTGGCCACATTCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: HLALASRNADSE*LKVHWCGHIQG Trigger: TCCCTGAATGTGGCCACACCAATGCACTTTCAGCCACTCTGAGTCAGCGTTTCTTGATGCCAGGGCAAGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CAA 90 bp | GGAGATCTGACTCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTAAGTAACCATAGCTCTTaGCAGCCGGACGAGGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: GDLTHCKLASALHSHVIVSNHSS*QPDEVY Trigger: ATAAACCTCGTCCGGCTGCAAAGAGCTATGGTTACT...TACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGAGTCAGATCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 72 bp | GAAAGAAGCAAGACTGAAAGTCATACTTCCCACTTCTaGGCACAGCTTACTGACAGCACCATCTACTTTGCC | + |
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Preference number: 3 (lower is better) Translates to: ERSKTESHTSHF*AQLTDSTIYFA Trigger: GGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGCCCAGAAGTGGGAAGTATGACTTTCAGTCTTGCTTCTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR TCA 72 bp | TGGAAATGGCTCTTTCTGACCATCTCAATTTCCACATaGGACGGCAAGTCCCGGAGAGTTTGTTCAGGAATT | + |
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Preference number: 3 (lower is better) Translates to: WKWLFLTISIST*DGKSRRVCSGI Trigger: AATTCCTGAACAAACTCTCCGGGACTTGCCGTCTCATGTGGAAATTGAGATGGTCAGAAAGAGCCATTTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR-3UTR CAA 90 bp | AAATATTCTGATTTTAAATGTAAGCTCCGGGTAGCTAGGTATGCTCTGTGCACAGAGGGGGCATATGAATaGGCTTCCAAGGAATTGGGT | + |
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Preference number: 3 (lower is better) Translates to: KYSDFKCKLRVARYALCTEGAYE*ASKELG Trigger: ACCCAATTCCTTGGAAGCCAATTCATATGCCCCCTC...TGTGCACAGAGCATACCTAGCTACCCGGAGCTTACATTTAAAATCAGAATATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 72 bp | TCCACTCTTAGCTTCCTTAGGAGGGGGCATATGAATTaGCTTCCAAGGAATTGGGTTATAAAAAGTTGGTTC | + |
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Preference number: 3 (lower is better) Translates to: STLSFLRRGHMN*LPRNWVIKSWF Trigger: GAACCAACTTTTTATAACCCAATTCCTTGGAAGCCAATTCATATGCCCCCTCCTAAGGAAGCTAAGAGTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| 3UTR CCA 72 bp | AAGTCCCGGAGAGTTTGTTCAGGAATTTGCCCTTTCTaGGTATTCAGTGAAAGAAGCAAGACTGAAAGTCAT | + |
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Preference number: 3 (lower is better) Translates to: KSRRVCSGICPF*VFSERSKTESH Trigger: ATGACTTTCAGTCTTGCTTCTTTCACTGAATACCCAGAAAGGGCAAATTCCTGAACAAACTCTCCGGGACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| 3UTR GCA 72 bp | GGTTATATGGATCCTGCACCGCTCATTACAAAGGTCTaGACGTTTAAAGGATTAAATATTTGGATGACTGCT | + |
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Preference number: 3 (lower is better) Translates to: GYMDPAPLITKV*TFKGLNIWMTA Trigger: AGCAGTCATCCAAATATTTAATCCTTTAAACGTGCAGACCTTTGTAATGAGCGGTGCAGGATCCATATAACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| CDS-3UTR CCA 90 bp | ATGACGATGGGAGGGGCTGGCTCGCTGCATGTCGTTTACTCTTCTTTCCGGGTCAACGGAAAGCTCTGGTaGCCAAGGGGAGACAACAGG | + |
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Preference number: 4 (lower is better) Translates to: MTMGGAGSLHVVYSSFRVNGKLW*PRGDNR Trigger: CCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTT...GACCCGGAAAGAAGAGTAAACGACATGCAGCGAGCCAGCCCCTCCCATCGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
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| CDS-3UTR GCA 90 bp | GCAAGACTGAAAGTCATACTTCCCACTTCTGGGCACAGCTTACTGACAGCACCAACAGGGTGGAGTTGCTaGAGCTCAGAGACGGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: ARLKVILPTSGHSLLTAPTGWSC*SSETAA Trigger: CGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGT...TGGTGCTGTCAGTAAGCTGTGCCCAGAAGTGGGAAGTATGACTTTCAGTCTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
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| CDS-3UTR GCA 90 bp | CTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGAAGTGGGGACAGGGTGGAGTTaGTGCAGCTCAGAGACGGCG | + |
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Preference number: 4 (lower is better) Translates to: LHKSGDVSSILRMHTVEVGTGWS*CSSETA Trigger: CGCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCC...CACTTCTACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
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| CDS-3UTR GCA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGGGACAGGGTGGAGTTaGTGCAGCTCAGAGACGGCG | + |
|
Preference number: 4 (lower is better) Translates to: CLLHKSGDVSSILRMHTVGTGWS*CSSETA Trigger: CGCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCC...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR GCA 90 bp | TCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACAGGGTGGAGTTGCTaGAGCTCAGAGACGGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: SLQASLCSPQSCYSICMPTGWSC*SSETAA Trigger: CGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGT...GGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | ATGCTCTGTGCACACACTCTATCTCTGTCCTCGGCACAGAGCTCCAAGGCAAAGACAACAGGGACAGGGTaGAGTTGCTGCAGCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: MLCAHTLSLSSAQSSKAKTTGTG*SCCSSE Trigger: CTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGT...CTTTGCCTTGGAGCTCTGTGCCGAGGACAGAGATAGAGTGTGTGCACAGAGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
||
| CDS-3UTR GCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACAACAGGGTGGAGTTGCTaGAGCTCAGAGACGGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: KLASALHSHVIVYACPHTTGWSC*SSETAA Trigger: CGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGT...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR TCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACAATGAACTGCCAGGGATaGCGATGGGAGGGGCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KLASALHSHVIVYACPHTMNCQG*RWEGLA Trigger: AGCCAGCCCCTCCCATCGTCATCCCTGGCAGTTCAT...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS-3UTR CCA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAACAACAGGGACAGGGTaGAGTTGCTGCAGCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: CLLHKSGDVSSILRMHTVTTGTG*SCCSSE Trigger: CTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGT...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | ATGCTCTGTGCACACACTCTATCTCTGTCCTCGGCACAGAGCTCCAAGGCAAAGACTCAACTTCACAGCTaGAGCGCTGCTGGAACTCTA | + |
|
Preference number: 4 (lower is better) Translates to: MLCAHTLSLSSAQSSKAKTQLHS*SAAGTL Trigger: TAGAGTTCCAGCAGCGCTCCAGCTGTGAAGTTGAGT...CTTTGCCTTGGAGCTCTGTGCCGAGGACAGAGATAGAGTGTGTGCACAGAGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | TCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCCCAAACGGAAAGCTCTaGTGGCCAAGGGGAGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: SLQASLCSPQSCYSICMPPNGKL*WPRGDN Trigger: GTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGG...GGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACAAACGGAAAGCTCTGGTaGCCAAGGGGAGACAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: KLASALHSHVIVYACPHTNGKLW*PRGDNR Trigger: CCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTT...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACACCAAACGGAAAGCTCTaGTGGCCAAGGGGAGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: KLASALHSHVIVYACPHTPNGKL*WPRGDN Trigger: GTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGG...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | TCAGAAGAGGCAGATCAAAGACGGCAAGAGGAGGCTGTGCCAAGTATAGCATCTACTCAACTTCACAGCTaGAGCGCTGCTGGAACTCTA | + |
|
Preference number: 4 (lower is better) Translates to: SEEADQRRQEEAVPSIASTQLHS*SAAGTL Trigger: TAGAGTTCCAGCAGCGCTCCAGCTGTGAAGTTGAGT...AGATGCTATACTTGGCACAGCCTCCTCTTGCCGTCTTTGATCTGCCTCTTCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR CCA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGGCAAAGACTGCTCTTaGCATTATGAACTGCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: CLLHKSGDVSSILRMHTVGKDCS*HYELPG Trigger: CCCTGGCAGTTCATAATGCCAAGAGCAGTCTTTGCC...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| 3UTR CAA 72 bp | ACTTCTGGGCACAGCTTACTGACAGCACCATCTACTTaGCCTTTTTGTGCAGGTTATATGGATCCTGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: TSGHSLLTAPST*PFCAGYMDPAP Trigger: CGGTGCAGGATCCATATAACCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGCCCAGAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR CCA 90 bp | AAAAGAAACCTGGAAATGGCTCTTTCTGACCATCTCAATTTCCACATGAGACGGACAACAGGGACAGGGTaGAGTTGCTGCAGCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: KRNLEMALSDHLNFHMRRTTGTG*SCCSSE Trigger: CTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGT...CCGTCTCATGTGGAAATTGAGATGGTCAGAAAGAGCCATTTCCAGGTTTCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR CCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACAACTCAACTTCACAGCTaGAGCGCTGCTGGAACTCTA | + |
|
Preference number: 4 (lower is better) Translates to: KLASALHSHVIVYACPHTTQLHS*SAAGTL Trigger: TAGAGTTCCAGCAGCGCTCCAGCTGTGAAGTTGAGT...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR TCA 90 bp | CACTTCTGGGCACAGCTTACTGACAGCACCATCTACTTTGCCTTTTTGTGCAGGTGGACTTCAGTTCTCTaGCCTCCAGAAATTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: HFWAQLTDSTIYFAFLCRWTSVL*PPEISV Trigger: AACAGAAATTTCTGGAGGTCAGAGAACTGAAGTCCA...CCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGCCCAGAAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR GCA 90 bp | CTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGAAGTGTTCTCTTGTTTGTCTTaGGACTCAACTTCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LHKSGDVSSILRMHTVEVFSCLS*DSTSQL Trigger: CAGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAA...CACTTCTACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR GCA 90 bp | GATATTTCTCTCAGAAGAGGCAGATCAAAGACGGCAAGAGGAGGCTGTGCCAAGTTCTCTTGTTTGTCTTaGGACTCAACTTCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: DISLRRGRSKTARGGCAKFSCLS*DSTSQL Trigger: CAGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAA...CTTGGCACAGCCTCCTCTTGCCGTCTTTGATCTGCCTCTTCTGAGAGAAATATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR GCA 90 bp | TCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCCTCCAAGGCAAAGACTaGTCTTGGCATTATGAACTG | + |
|
Preference number: 4 (lower is better) Translates to: SLQASLCSPQSCYSICMPLQGKD*SWHYEL Trigger: CAGTTCATAATGCCAAGAGCAGTCTTTGCCTTGGAG...GGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS-3UTR CCA 90 bp | GGAGATCTGACTCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTAAGGGGGCATATGAATTaGCTTCCAAGGAATTGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: GDLTHCKLASALHSHVIVRGHMN*LPRNWV Trigger: AACCCAATTCCTTGGAAGCCAATTCATATGCCCCCT...TACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGAGTCAGATCTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| 3UTR CAA 72 bp | GCACAGCTTACTGACAGCACCATCTACTTTGCCTTTTaGTGCAGGTTATATGGATCCTGCACCGCTCATTAC | + |
|
Preference number: 4 (lower is better) Translates to: AQLTDSTIYFAF*CRLYGSCTAHY Trigger: GTAATGAGCGGTGCAGGATCCATATAACCTGCACAAAAAGGCAAAGTAGATGGTGCTGTCAGTAAGCTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR GCA 90 bp | GGAGATCTGACTCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATTCTCTTGTTTGTCTTaGGACTCAACTTCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GDLTHCKLASALHSHVIVFSCLS*DSTSQL Trigger: CAGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAA...TACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGAGTCAGATCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CCA 90 bp | TTAGCTCCATTCTTTAAACTGGGAAGAAAATGTCCAGGCTCTCTAGAGAAATCTCCAAACGGAAAGCTCTaGTGGCCAAGGGGAGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: LAPFFKLGRKCPGSLEKSPNGKL*WPRGDN Trigger: GTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGG...AGATTTCTCTAGAGAGCCTGGACATTTTCTTCCCAGTTTAAAGAATGGAGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| 3UTR CAA 72 bp | CTGGGAAGAAAATGTCCAGGCTCTCTAGAGAAATCTTaGAGGGCTGCTGACTTAAATGTGCACACACGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LGRKCPGSLEKS*RAADLNVHTRE Trigger: TTCACGTGTGTGCACATTTAAGTCAGCAGCCCTCAAAGATTTCTCTAGAGAGCCTGGACATTTTCTTCCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR CCA 90 bp | CTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGAAGTGTGGGTTATAAAAAGTTaGTTCTGGGTAGGAATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LHKSGDVSSILRMHTVEVWVIKS*FWVGIS Trigger: GGAAATTCCTACCCAGAACCAACTTTTTATAACCCA...CACTTCTACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS-3UTR CCA 90 bp | CTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGAAGTGTGGCTTCCAAGGAATTaGGTTATAAAAAGTTGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LHKSGDVSSILRMHTVEVWLPRN*VIKSWF Trigger: GAACCAACTTTTTATAACCCAATTCCTTGGAAGCCA...CACTTCTACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS-3UTR CCA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACAATAAAAAGTTGGTTCTaGGTAGGAATTTCCACTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KLASALHSHVIVYACPHTIKSWF*VGISTV Trigger: TACAGTGGAAATTCCTACCCAGAACCAACTTTTTAT...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS GCA 90 bp | TCGAGGAGGGCCGGAAGCCCGGCTTGCAGCGGGCGAGGTAACGGGTaGACGGAGCCGGAGAGGCAGCCCGCCACGGCCCAGCGGCCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: SRRAGSPACSGRGNG*TEPERQPATAQRPA Trigger: TGCGGGCCGCTGGGCCGTGGCGGGCTGCCTCTCCGGCTCCGTGCACCCGTTACCTCGCCCGCTGCAAGCCGGGCTTCCGGCCCTCCTCGA 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS CCA 90 bp | TCATCCTCCCCCTCACTGTCGTCCGCGCCAAACGGAAAGCTCTGGTaGCCAAGGGGAGACAACAGGGACAGGGTGGAGTTGCTGCAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: SSSPSLSSAPNGKLW*PRGDNRDRVELLQL Trigger: GAGCTGCAGCAACTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGGCGCGGACGACAGTGAGGGGGAGGATGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
||
| CDS CCA 90 bp | CAAACGGAAAGCTCTGGTGGCCAAGGGGAGACAACAGGGACAGGGTaGAGTTGCTGCAGCTCAGAGACGGCGGCGACAAGCACTCGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: QTESSGGQGETTGTG*SCCSSETAATSTRS Trigger: TGACCGAGTGCTTGTCGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
||
| CDS CCA 90 bp | TCTTCATCCTCCCCCTCACTGTCGTCCGCGCCAAACGGAAAGCTCTaGTGGCCAAGGGGAGACAACAGGGACAGGGTGGAGTTGCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: SSSSPSLSSAPNGKL*WPRGDNRDRVELLQ Trigger: CTGCAGCAACTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGGCGCGGACGACAGTGAGGGGGAGGATGAAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
||
| CDS-3UTR CAA 90 bp | TCCGGGTCCACTCTTAGCTTCCTTAGGAGGGGGCATATGAATTGGCTTCCAAGGAGGGACAGGGTGGAGTaGCTGCAGCTCAGAGACGGC | + |
|
Preference number: 5 (lower is better) Translates to: SGSTLSFLRRGHMNWLPRRDRVE*LQLRDG Trigger: GCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCT...CCTTGGAAGCCAATTCATATGCCCCCTCCTAAGGAAGCTAAGAGTGGACCCGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | TCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCAGGGACAGGGTGGAGTaGCTGCAGCTCAGAGACGGC | + |
|
Preference number: 5 (lower is better) Translates to: SLQASLCSPQSCYSICMPRDRVE*LQLRDG Trigger: GCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCT...GGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | GACTTAAATGTGCACACACGTGAACTCTTCAAGGGTATAATTTCGGCCAGGAAAAGGGACAGGGTGGAGTaGCTGCAGCTCAGAGACGGC | + |
|
Preference number: 5 (lower is better) Translates to: DLNVHTRELFKGIISARKRDRVE*LQLRDG Trigger: GCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCT...TTTCCTGGCCGAAATTATACCCTTGAAGAGTTCACGTGTGTGCACATTTAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR CAA 90 bp | CTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAGAAGTGCGCTCTTCTTTCTCCTaGCCAACAAACCACATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LHKSGDVSSILRMHTVEVRSSFS*PTNHIS Trigger: GGAGATGTGGTTTGTTGGCAAGGAGAAAGAAGAGCG...CACTTCTACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTACGCTCTTCTTTCTCCTaGCCAACAAACCACATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: CLLHKSGDVSSILRMHTVRSSFS*PTNHIS Trigger: GGAGATGTGGTTTGTTGGCAAGGAGAAAGAAGAGCG...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTAAGTAACCATAGCTCTTaGCAGCCGGACGAGGTTTAT | + |
|
Preference number: 5 (lower is better) Translates to: CLLHKSGDVSSILRMHTVSNHSS*QPDEVY Trigger: ATAAACCTCGTCCGGCTGCAAAGAGCTATGGTTACT...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS-3UTR CAA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTACTTCTCTTGTTTGTCTaGCGACTCAACTTCACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: CLLHKSGDVSSILRMHTVLLLFV*RLNFTA Trigger: AGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAAG...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | AAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCACACACAGAGGGGGCATATGAATaGGCTTCCAAGGAATTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: KLASALHSHVIVYACPHTEGAYE*ASKELG Trigger: ACCCAATTCCTTGGAAGCCAATTCATATGCCCCCTC...TGTGTGTGGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028580.12 |
||
| CDS-3UTR CAA 90 bp | GGAGATCTGACTCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTACTTCTCTTGTTTGTCTaGCGACTCAACTTCACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: GDLTHCKLASALHSHVIVLLLFV*RLNFTA Trigger: AGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAAG...TACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGAGTCAGATCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | GACTTAAATGTGCACACACGTGAACTCTTCAAGGGTATAATTTCGGCCAGGAAACGCTCTTCTTTCTCCTaGCCAACAAACCACATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: DLNVHTRELFKGIISARKRSSFS*PTNHIS Trigger: GGAGATGTGGTTTGTTGGCAAGGAGAAAGAAGAGCG...TTTCCTGGCCGAAATTATACCCTTGAAGAGTTCACGTGTGTGCACATTTAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150183.9 |
||
| CDS-3UTR CAA 90 bp | TGCTTGCTGCACAAGTCTGGCGACGTGAGCTCAATCCTTAGAATGCACACAGTACTGCTTATTTTTCTTTaGAACCCATTCCTTGTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: CLLHKSGDVSSILRMHTVLLIFL*NPFLVL Trigger: AAGCACAAGGAATGGGTTCAAAAGAAAAATAAGCAG...TACTGTGTGCATTCTAAGGATTGAGCTCACGTCGCCAGACTTGTGCAGCAAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS-3UTR CAA 90 bp | TCACTGCAAGCTAGCCTCTGCTCTCCACAGTCATGTTATAGTATATGCATGCCCCTGCTTATTTTTCTTTaGAACCCATTCCTTGTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: SLQASLCSPQSCYSICMPLLIFL*NPFLVL Trigger: AAGCACAAGGAATGGGTTCAAAAGAAAAATAAGCAG...GGGCATGCATATACTATAACATGACTGTGGAGAGCAGAGGCTAGCTTGCAGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 |
||
| CDS GCA 72 bp | GGTGGCCAAGGGGAGACAACAGGGACAGGGTGGAGTTaGTGCAGCTCAGAGACGGCGGCGACAAGCACTCGG | + |
|
Preference number: 6 (lower is better) Translates to: GGQGETTGTGWS*CSSETAATSTR Trigger: CCGAGTGCTTGTCGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
||
| CDS CCA 72 bp | AGCTCTGGTGGCCAAGGGGAGACAACAGGGACAGGGTaGAGTTGCTGCAGCTCAGAGACGGCGGCGACAAGC | + |
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Preference number: 6 (lower is better) Translates to: SSGGQGETTGTG*SCCSSETAATS Trigger: GCTTGTCGCCGCCGTCTCTGAGCTGCAGCAACTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACCAGAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS CCA 72 bp | TCCCCCTCACTGTCGTCCGCGCCAAACGGAAAGCTCTaGTGGCCAAGGGGAGACAACAGGGACAGGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SPSLSSAPNGKL*WPRGDNRDRVE Trigger: CTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGGCGCGGACGACAGTGAGGGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS CCA 72 bp | CCCTCACTGTCGTCCGCGCCAAACGGAAAGCTCTGGTaGCCAAGGGGAGACAACAGGGACAGGGTGGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: PSLSSAPNGKLW*PRGDNRDRVEL Trigger: CAACTCCACCCTGTCCCTGTTGTCTCCCCTTGGCCACCAGAGCTTTCCGTTTGGCGCGGACGACAGTGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS CAA 72 bp | CGCTGCTGGAACTCTATTCCTTCCAAGCTCTCCACCTaGCTCTCGGACTCACGGGCATCTTCGTCCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RCWNSIPSKLST*LSDSRASSSRA Trigger: GGCCCTGGACGAAGATGCCCGTGAGTCCGAGAGCAAGGTGGAGAGCTTGGAAGGAATAGAGTTCCAGCAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS GCA 72 bp | CCGTGCTGTAACAGCACCAGCTTCTCTTGTTTGTCTTaGGACTCAACTTCACAGCTGGAGCGCTGCTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: PCCNSTSFSCLS*DSTSQLERCWN Trigger: GTTCCAGCAGCGCTCCAGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAAGCTGGTGCTGTTACAGCACGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS GCA 72 bp | ATTTCTGTTGTAGCCGGCCTCGCTCTTCTTTCTCCTTaGCAACAAACCACATCTCCCATGGCGTCAGACTGC | + |
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Preference number: 6 (lower is better) Translates to: ISVVAGLALLSP*QQTTSPMASDC Trigger: GCAGTCTGACGCCATGGGAGATGTGGTTTGTTGGCAAGGAGAAAGAAGAGCGAGGCCGGCTACAACAGAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS CAA 72 bp | AATTTCTGTTGTAGCCGGCCTCGCTCTTCTTTCTCCTaGCCAACAAACCACATCTCCCATGGCGTCAGACTG | + |
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Preference number: 6 (lower is better) Translates to: NFCCSRPRSSFS*PTNHISHGVRL Trigger: CAGTCTGACGCCATGGGAGATGTGGTTTGTTGGCAAGGAGAAAGAAGAGCGAGGCCGGCTACAACAGAAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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| CDS CCA 72 bp | GCTTCTCTTGTTTGTCTTGCGACTCAACTTCACAGCTaGAGCGCTGCTGGAACTCTATTCCTTCCAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: ASLVCLATQLHS*SAAGTLFLPSS Trigger: AGAGCTTGGAAGGAATAGAGTTCCAGCAGCGCTCCAGCTGTGAAGTTGAGTCGCAAGACAAACAAGAGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028580.12 ENSMUST00000127630.8 ENSMUST00000150183.9 |
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