Pregenerated sensors for CCDC32 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039983Ensembl transcript IDs: ENSMUST00000036470.14, ENSMUST00000110833.2, ENSMUST00000110834.8
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCAGTGCTCAGTCAAGCTGTGAGACATGCAGGACAGCAGTGTTTTaGTCCAGCACACACTGGGTCTGTCACTTCATCCAGGACAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: RSAQSSCETCRTAVF*SSTHWVCHFIQDSH Trigger: GTGACTGTCCTGGATGAAGTGACAGACCCAGTGTGTGCTGGATCAAAACACTGCTGTCCTGCATGTCTCACAGCTTGACTGAGCACTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR GCA 90 bp | GGGCATCAGACCCCCATTACAAATGGTTGTAAGCGACCATGTGGTTaGTGTGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTG | + |
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Preference number: 1 (lower is better) Translates to: GHQTPITNGCKRPCG*CELNSGPLEEQPVL Trigger: CAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCACAGCAACCACATGGTCGCTTACAACCATTTGTAATGGGGGTCTGATGCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR GCA 90 bp | TCACTCTCCTTGGCTACCCTTGTTCCTGACTACTTAACTATGGAATaGTTGAGACACATACATGAAGATCCAGAAGAGGGAGAGAAAACA | + |
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Preference number: 1 (lower is better) Translates to: SLSLATLVPDYLTME*LRHIHEDPEEGEKT Trigger: TGTTTTCTCTCCCTCTTCTGGATCTTCATGTATGTGTCTCAAGCATTCCATAGTTAAGTAGTCAGGAACAAGGGTAGCCAAGGAGAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CCA 90 bp | ACAGTCACACATGCCAGCCCTAAGCAAGTCCCCGGGGGCCAGCAGCTGTTTGCTCTCCGCTGTTCCCCCTaGGCCCCAGACAGCTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: TVTHASPKQVPGGQQLFALRCSP*APDSCL Trigger: CAAGCAGCTGTCTGGGGCCCAGGGGGAACAGCGGAG...AGCAAACAGCTGCTGGCCCCCGGGGACTTGCTTAGGGCTGGCATGTGTGACTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR GCA 90 bp | CCCTCCCTGGATTTCTCCTTGCTGCCGTGCTGTCAAGCTCTCCGCTGTTCCCCCTGGGCCCCAGACAGCTaGTTGGCGTATGTGTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: PSLDFSLLPCCQALRCSPWAPDS*LAYVCV Trigger: CACACACACATACGCCAAGCAGCTGTCTGGGGCCCA...GGGGGAACAGCGGAGAGCTTGACAGCACGGCAGCAAGGAGAAATCCAGGGAGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR TCA 90 bp | TTATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTGCCTTGGCGTATCTTTCATGGCTCACTTGACTaGTCCATTCTATCCGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: LWSPGWQRLLAPLPWRIFHGSLD*SILSEG Trigger: GCCCTCGGATAGAATGGATCAGTCAAGTGAGCCATG...AAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGTCTCTCTGTGTAGCCCTGGCTATCCGGGAACTTGTTATGGTCACCAGGTGTGGAGTGGAAGTCTaGGCTTTTTCCCCTCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: TESLCVALAIRELVMVTRCGVEV*AFSPPW Trigger: CCAGGGAGGGGAAAAAGCCCAGACTTCCACTCCACA...CCTGGTGACCATAACAAGTTCCCGGATAGCCAGGGCTACACAGAGAGACTCAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CCA 90 bp | TCTGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTACAAATGGGCTTTTTCCCCTCCCTaGATTTCTCCTTGCTGCCGT | + |
|
Preference number: 2 (lower is better) Translates to: SAFTPACQKRASDPHYKWAFSPP*ISPCCR Trigger: ACGGCAGCAAGGAGAAATCCAGGGAGGGGAAAAAGC...CCATTTGTAATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CCA 90 bp | GTGAGCGAATCCGGCCAGGACTTGGACTCAAGGAGACTGACTTCACTCTCCTTGCAGCTGTTTGCTTTGTaGAGTGGAAGTCTGGGCTTT | + |
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Preference number: 2 (lower is better) Translates to: VSESGQDLDSRRLTSLSLQLFAL*SGSLGF Trigger: AAAGCCCAGACTTCCACTCCACAAAGCAAACAGCTG...CAAGGAGAGTGAAGTCAGTCTCCTTGAGTCCAAGTCCTGGCCGGATTCGCTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR CAA 90 bp | ACCCCCATTACAAATGGTTGTAAGCGACCATGTGGTTGCTGTGAATaGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTGCTGAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: TPITNGCKRPCGCCE*NSGPLEEQPVLLSH Trigger: ATGGCTCAGCAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCACAGCAACCACATGGTCGCTTACAACCATTTGTAATGGGGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR TCA 90 bp | GAAGACATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACCAACCTTCCAAGGGCTaGTTTCAGCTCAGAGAGATA | + |
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Preference number: 2 (lower is better) Translates to: EDIALAGASVPSFSSAGYQPSKG*FQLREI Trigger: TATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTG...GTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATGTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGTGAGACATGCAGGACAGCAGTGTTTTGATCCAGCACACACTGGGTCTGTCGTTTGCTTTGTGGAGTaGAAGTCTGGGCTTTTTCCC | + |
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Preference number: 2 (lower is better) Translates to: AVRHAGQQCFDPAHTGSVVCFVE*KSGLFP Trigger: GGGAAAAAGCCCAGACTTCCACTCCACAAAGCAAAC...GACAGACCCAGTGTGTGCTGGATCAAAACACTGCTGTCCTGCATGTCTCACAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CCA 90 bp | ATATTCTATCTGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTTCATGTGAGAGGAAATaGGTCAACGGCAACCCCCGC | + |
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Preference number: 2 (lower is better) Translates to: IFYLHLHLPARRGHQTPISCERK*VNGNPR Trigger: GCGGGGGTTGCCGTTGACCCATTTCCTCTCACATGA...AATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCAGATAGAATAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR TCA 90 bp | AGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTTGAAGACAGCGGAGTTCTTTAGTGAGTaGGAAGTAGTCTTAGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: SWRFSTIFLQCRVHLKTAEFFSE*EVVLVK Trigger: CTTCACTAAGACTACTTCTCACTCACTAAAGAACTC...CGCTGTCTTCAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR-3UTR TCA 90 bp | ATATTCTATCTGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTCTTGAGACACATACATaGAGATCCAGAAGAGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: IFYLHLHLPARRGHQTPILETHT*RSRRGR Trigger: TCTCCCTCTTCTGGATCTTCATGTATGTGTCTCAAG...AATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCAGATAGAATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR TCA 90 bp | TGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTACAAATGGTTTCGGGGAACTTACCATaGGAAGCAAGTTTGGAATTA | + |
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Preference number: 2 (lower is better) Translates to: CIYTCLPEEGIRPPLQMVSGNLP*EASLEL Trigger: TAATTCCAAACTTGCTTCTCATGGTAAGTTCCCCGA...AACCATTTGTAATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR CAA 90 bp | CTCTCCTTGGCTACCCTTGTTCCTGACTACTTAACTATGGAATGCTaGAGACACATACATGAAGATCCAGAAGAGGGAGAGAAAACATGG | + |
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Preference number: 2 (lower is better) Translates to: LSLATLVPDYLTMEC*RHIHEDPEEGEKTW Trigger: CCATGTTTTCTCTCCCTCTTCTGGATCTTCATGTATGTGTCTCAAGCATTCCATAGTTAAGTAGTCAGGAACAAGGGTAGCCAAGGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR TCA 90 bp | GTGCAGGGTACACTTGAAGACAGCGGCTCATCCTCAACTCTCTTCATTCTAAAAGAGTTCTTTAGTGAGTaGGAAGTAGTCTTAGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: VQGTLEDSGSSSTLFILKEFFSE*EVVLVK Trigger: CTTCACTAAGACTACTTCTCACTCACTAAAGAACTC...TTTTAGAATGAAGAGAGTTGAGGATGAGCCGCTGTCTTCAAGTGTACCCTGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR CAA 90 bp | AATCAAGAGTTGTGTCAAACACTAAACCATATTTACAAGTCTAATTaGGAACGTGTAAAGTTCCTACAAGCAGAAGCTGGGGGAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: NQELCQTLNHIYKSN*ERVKFLQAEAGGAA Trigger: GGCTGCTCCCCCAGCTTCTGCTTGTAGGAACTTTACACGTTCCAAATTAGACTTGTAAATATGGTTTAGTGTTTGACACAACTCTTGATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR CCA 72 bp | TTGCTGCCGTGCTGTCAAGCTCTCCGCTGTTCCCCCTaGGCCCCAGACAGCTGCTTGGCGTATGTGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: LLPCCQALRCSP*APDSCLAYVCV Trigger: CACACACACATACGCCAAGCAGCTGTCTGGGGCCCAGGGGGAACAGCGGAGAGCTTGACAGCACGGCAGCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CAA 90 bp | CCTGGCTATCCGGGAACTTGTTATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCGGGGCCAGCAGCTGTTaGCTTTGTGGAGTGGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: PGYPGTCYGHQAGKGCWLGASSC*LCGVEV Trigger: GACTTCCACTCCACAAAGCAAACAGCTGCTGGCCCC...GAGCCAGCAACCTTTGCCAGCCTGGTGACCATAACAAGTTCCCGGATAGCCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CAA 90 bp | GGTCCTTACAGACCCCTAACCCGTAGCCGCAGTGCTCAGTCAAGCTGTGAGACACAGCAGCTGTTTGCTTaGTGGAGTGGAAGTCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: GPYRPLTRSRSAQSSCETQQLFA*WSGSLG Trigger: GCCCAGACTTCCACTCCACAAAGCAAACAGCTGCTG...TGTCTCACAGCTTGACTGAGCACTGCGGCTACGGGTTAGGGGTCTGTAAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR CCA 72 bp | TCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTGCCTTaGCGTATCTTTGTCTTTATTTCCTGTGTCCTCGGC | + |
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Preference number: 3 (lower is better) Translates to: SPGWQRLLAPLP*RIFVFISCVLG Trigger: GCCGAGGACACAGGAAATAAAGACAAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR GCA 72 bp | CCGGGAACTTGTTATGGTCACCAGGCTGGCAAAGGTTaGTGGCTCCCCTGCCTTGGCGTATCTTTGTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: PGTCYGHQAGKG*WLPCLGVSLSL Trigger: TAAAGACAAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAACAAGTTCCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR GCA 72 bp | AGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTaGAGGGTACACTTGAAGACAGCGGCTCATCCTCAA | + |
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Preference number: 3 (lower is better) Translates to: SASWRFSTIFLQ*RVHLKTAAHPQ Trigger: TTGAGGATGAGCCGCTGTCTTCAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR GCA 72 bp | TATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTaGCTTGGCGTATCTTTGTCTTTATTTCCTGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: YGHQAGKGCWLP*LGVSLSLFPVS Trigger: GGACACAGGAAATAAAGACAAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CAA 90 bp | CCTGGCTATCCGGGAACTTGTTATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCTGCCTTGGCGTATCTTaGTCTTTATTTCCTGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: PGYPGTCYGHQAGKGCWLCLGVS*SLFPVS Trigger: GGACACAGGAAATAAAGACAAAGATACGCCAAGGCA...GAGCCAGCAACCTTTGCCAGCCTGGTGACCATAACAAGTTCCCGGATAGCCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CAA 90 bp | TGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTACAAATGGTTCTGACTTCACTCTCCTaGGCTACCCTTGTTCCTGAC | + |
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Preference number: 3 (lower is better) Translates to: CIYTCLPEEGIRPPLQMVLTSLS*ATLVPD Trigger: GTCAGGAACAAGGGTAGCCAAGGAGAGTGAAGTCAG...AACCATTTGTAATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR-3UTR CAA 90 bp | CATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTTGCCGACACCACTCTACTaGAGTTCTTTAGTGAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: HSASWRFSTIFLQCRVHLPTPLY*SSLVSE Trigger: CTCACTCACTAAAGAACTCAAGTAGAGTGGTGTCGG...CAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR TCA 72 bp | CAAATGGTTGTAAGCGACCATGTGGTTGCTGTGAATTaGACTCAGGACCTCTGGAAGAGCAGCCAGTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: QMVVSDHVVAVN*TQDLWKSSQCC Trigger: GCAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCACAGCAACCACATGGTCGCTTACAACCATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR CCA 72 bp | GGAACTTGTTATGGTCACCAGGCTGGCAAAGGTTGCTaGCTCCCCTGCCTTGGCGTATCTTTGTCTTTATTT | + |
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Preference number: 3 (lower is better) Translates to: GTCYGHQAGKGC*LPCLGVSLSLF Trigger: AAATAAAGACAAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAACAAGTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR TCA 72 bp | GCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTTaGAGACAGCGGCTCATCCTCAACTCTCTTCATTCT | + |
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Preference number: 3 (lower is better) Translates to: ASVPSFSSAGYT*RQRLILNSLHS Trigger: AGAATGAAGAGAGTTGAGGATGAGCCGCTGTCTTCAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR CCA 72 bp | GGGCTGATTTCAGCTCAGAGAGATATCAGCATCAACTaGTACCAGTACTCCGACACCACTCTACTTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: GLISAQRDISIN*YQYSDTTLLEF Trigger: GAACTCAAGTAGAGTGGTGTCGGAGTACTGGTACCAGTTGATGCTGATATCTCTCTGAGCTGAAATCAGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR TCA 72 bp | GAGACTGACTTCACTCTCCTTGGCTACCCTTGTTCCTaGCTACTTAACTATGGAATGCTTGAGACACATACA | + |
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Preference number: 3 (lower is better) Translates to: ETDFTLLGYPCS*LLNYGMLETHT Trigger: TGTATGTGTCTCAAGCATTCCATAGTTAAGTAGTCAGGAACAAGGGTAGCCAAGGAGAGTGAAGTCAGTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR TCA 72 bp | TCCATACAAGGATCTATTGGACAACCTTCCAAGGGCTaGTTTCAGCTCAGAGAGATATCAGCATCAACTGGT | + |
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Preference number: 3 (lower is better) Translates to: SIQGSIGQPSKG*FQLREISASTG Trigger: ACCAGTTGATGCTGATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCTTGTATGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR-3UTR CAA 90 bp | CACACACACTACACAGTTGCTCCAATGAGAAAGTTTTATATAGACAACTCAAACCAGGACAGCAGTGTTTaGATCCAGCACACACTGGGT | + |
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Preference number: 3 (lower is better) Translates to: HTHYTVAPMRKFYIDNSNQDSSV*IQHTLG Trigger: ACCCAGTGTGTGCTGGATCAAAACACTGCTGTCCTG...GTTTGAGTTGTCTATATAAAACTTTCTCATTGGAGCAACTGTGTAGTGTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| 3UTR GCA 72 bp | TTGGCTACCCTTGTTCCTGACTACTTAACTATGGAATaGTTGAGACACATACATGAAGATCCAGAAGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: LATLVPDYLTME*LRHIHEDPEEG Trigger: TCCCTCTTCTGGATCTTCATGTATGTGTCTCAAGCATTCCATAGTTAAGTAGTCAGGAACAAGGGTAGCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR CCA 90 bp | GCTGCCGTGCTGTCAAGCTCTCCGCTGTTCCCCCTGGGCCCCAGACAGCTGCTTGGAGGGATGAGGAACTaGACCTCCTCTGTGCTGATG | + |
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Preference number: 4 (lower is better) Translates to: AAVLSSSPLFPLGPRQLLGGMRN*TSSVLM Trigger: CATCAGCACAGAGGAGGTCCAGTTCCTCATCCCTCC...AAGCAGCTGTCTGGGGCCCAGGGGGAACAGCGGAGAGCTTGACAGCACGGCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR GCA 90 bp | CTGGATTTCTCCTTGCTGCCGTGCTGTCAAGCTCTCCGCTGTTCCCCCTGGGCCCTGGACAGCAGAGTCTaGTGCTGCTGTATGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LDFSLLPCCQALRCSPWALDSRV*CCCMAF Trigger: GAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAG...GGCCCAGGGGGAACAGCGGAGAGCTTGACAGCACGGCAGCAAGGAGAAATCCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR GCA 90 bp | GCTGCCGTGCTGTCAAGCTCTCCGCTGTTCCCCCTGGGCCCCAGACAGCTGCTTTACACTTCTGAATCATaGAAGGGAGCCCACGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: AAVLSSSPLFPLGPRQLLYTSES*KGAHGF Trigger: AAAGCCGTGGGCTCCCTTGCATGATTCAGAAGTGTA...AAGCAGCTGTCTGGGGCCCAGGGGGAACAGCGGAGAGCTTGACAGCACGGCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR GCA 90 bp | TTATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTGCCTTGGCGTATCTTTTCGGGCTTCTCAGCCTaGGACTCCGGAGGGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: LWSPGWQRLLAPLPWRIFSGFSA*DSGGMR Trigger: CCTCATCCCTCCGGAGTCGCAGGCTGAGAAGCCCGA...AAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR CCA 90 bp | GCTGTGAGACATGCAGGACAGCAGTGTTTTGATCCAGCACACACTGGGTCTGTCTTGTTCTGCTGCCGCTaGCTTGTCCCCGGCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: AVRHAGQQCFDPAHTGSVLFCCR*LVPGLG Trigger: CCCGAGGCCGGGGACAAGCCAGCGGCAGCAGAACAA...GACAGACCCAGTGTGTGCTGGATCAAAACACTGCTGTCCTGCATGTCTCACAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR CCA 90 bp | ACTGAGTCTCTCTGTGTAGCCCTGGCTATCCGGGAACTTGTTATGGTCACCAGGCCACGGCTTTCCAGCTaGCTGGACAGCAGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TESLCVALAIRELVMVTRPRLSS*LDSRVC Trigger: GCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGG...CCTGGTGACCATAACAAGTTCCCGGATAGCCAGGGCTACACAGAGAGACTCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR CCA 90 bp | AGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTTGAAGACAGCGCCACGGCTTTCCAGCTaGCTGGACAGCAGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SWRFSTIFLQCRVHLKTAPRLSS*LDSRVC Trigger: GCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGG...CGCTGTCTTCAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS-3UTR CCA 90 bp | CCCGGGGGCCAGCAGCTGTTTGCTTTGTGGAGTGGAAGTCTGGGCTTTTTCCCCGATGCTAACTTCTCCTaGAGGAATCGATCCCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: PGGQQLFALWSGSLGFFPDANFS*RNRSQH Trigger: GTGCTGGGATCGATTCCTCCAGGAGAAGTTAGCATC...GGGGAAAAAGCCCAGACTTCCACTCCACAAAGCAAACAGCTGCTGGCCCCCGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR TCA 90 bp | TGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTACAAATGGTTGCGACTCCGGAGGGATaGGGAACTGGACCTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: CIYTCLPEEGIRPPLQMVATPEG*GTGPPL Trigger: CAGAGGAGGTCCAGTTCCTCATCCCTCCGGAGTCGC...AACCATTTGTAATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR CCA 90 bp | GCTGTGAGACATGCAGGACAGCAGTGTTTTGATCCAGCACACACTGGGTCTGTCGGCTTTCCAGCTGGCTaGACAGCAGAGTCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: AVRHAGQQCFDPAHTGSVGFPAG*TAESAA Trigger: AGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCC...GACAGACCCAGTGTGTGCTGGATCAAAACACTGCTGTCCTGCATGTCTCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| 3UTR CAA 72 bp | GTCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTGCCTaGGCGTATCTTTGTCTTTATTTCCTGTGTCCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: VTRLAKVAGSPA*AYLCLYFLCPR Trigger: CCGAGGACACAGGAAATAAAGACAAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS-3UTR TCA 90 bp | GGTCCTTACAGACCCCTAACCCGTAGCCGCAGTGCTCAGTCAAGCTGTGAGACAGCTGGAGCCACCTTTTaGAATGTTCCAAGGTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GPYRPLTRSRSAQSSCETAGATF*NVPRCS Trigger: AGAGCACCTTGGAACATTTCAAAAGGTGGCTCCAGC...TGTCTCACAGCTTGACTGAGCACTGCGGCTACGGGTTAGGGGTCTGTAAGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS-3UTR CCA 90 bp | AGGACCTCTGGAAGAGCAGCCAGTGCTGCTGAGCCATCTCTCCAGACCCCAATCGATGGCGACTTTATCTaGCTGGAGCCACCTTTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: RTSGRAASAAEPSLQTPIDGDFI*LEPPFE Trigger: TTCAAAAGGTGGCTCCAGCCAGATAAAGTCGCCATC...GATTGGGGTCTGGAGAGATGGCTCAGCAGCACTGGCTGCTCTTCCAGAGGTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| 3UTR CAA 72 bp | TCCGGGAACTTGTTATGGTCACCAGGCTGGCAAAGGTaGCTGGCTCCCCTGCCTTGGCGTATCTTTGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SGNLLWSPGWQR*LAPLPWRIFVF Trigger: AAAGACAAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAACAAGTTCCCGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR GCA 90 bp | CATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTTGCTGGACAGCAGAGTCTaGTGCTGCTGTATGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: HSASWRFSTIFLQCRVHLLDSRV*CCCMAF Trigger: GAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAG...CAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | TGTTATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTGCCTTGGCGTATCTTCGGAAACATCTTCTTaGGCAGGACTTGGCAGACAA | + |
|
Preference number: 4 (lower is better) Translates to: CYGHQAGKGCWLPCLGVSSETSS*AGLGRQ Trigger: TTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGA...AGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS-3UTR CCA 90 bp | TCTGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTACAAATGGTCTGCTGCTGCTGTATaGCTTTCCCCTGCAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: SAFTPACQKRASDPHYKWSAAAV*LSPAGW Trigger: CCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGA...CCATTTGTAATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS-3UTR TCA 90 bp | ATATTCTATCTGCATTTACACCTGCCTGCCAGAAGAGGGCATCAGACCCCCATTGGACCTCCTCTGTGCTaGTGGCGACTTTATCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: IFYLHLHLPARRGHQTPIGPPLC*WRLYLA Trigger: AGCCAGATAAAGTCGCCATCAGCACAGAGGAGGTCC...AATGGGGGTCTGATGCCCTCTTCTGGCAGGCAGGTGTAAATGCAGATAGAATAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS-3UTR CCA 90 bp | AGGGCTGATTTCAGCTCAGAGAGATATCAGCATCAACTGGTACCAGTACTCCGATCTGCTGCTGCTGTATaGCTTTCCCCTGCAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: RADFSSERYQHQLVPVLRSAAAV*LSPAGW Trigger: CCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGA...TCGGAGTACTGGTACCAGTTGATGCTGATATCTCTCTGAGCTGAAATCAGCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | GTGCAGGGTACACTTGAAGACAGCGGCTCATCCTCAACTCTCTTCATTCTAAAAGGCTTTCCAGCTGGCTaGACAGCAGAGTCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VQGTLEDSGSSSTLFILKGFPAG*TAESAA Trigger: AGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCC...TTTTAGAATGAAGAGAGTTGAGGATGAGCCGCTGTCTTCAAGTGTACCCTGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | AAGGATCTATTGGACAACCTTCCAAGGGCTGATTTCAGCTCAGAGAGATATCAGCCACGGCTTTCCAGCTaGCTGGACAGCAGAGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: KDLLDNLPRADFSSERYQPRLSS*LDSRVC Trigger: GCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGG...CTGATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | AGAAGACATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTAGATGCTAACTTCTCCTaGAGGAATCGATCCCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RRHSASWRFSTIFLQCRVDANFS*RNRSQH Trigger: GTGCTGGGATCGATTCCTCCAGGAGAAGTTAGCATC...TACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATGTCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| 3UTR CAA 72 bp | ATTTACGATGAGTGTGTGAGCGAATCCGGCCAGGACTaGGACTCAAGGAGACTGACTTCACTCTCCTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: IYDECVSESGQD*DSRRLTSLSLA Trigger: AGCCAAGGAGAGTGAAGTCAGTCTCCTTGAGTCCAAGTCCTGGCCGGATTCGCTCACACACTCATCGTAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| 3UTR CAA 72 bp | ACAAATGGTTGTAAGCGACCATGTGGTTGCTGTGAATaGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: TNGCKRPCGCCE*NSGPLEEQPVL Trigger: CAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCACAGCAACCACATGGTCGCTTACAACCATTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| 3UTR CAA 72 bp | CGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTaGAAGACAGCGGCTCATCCTCAACTCTCTTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: RFSTIFLQCRVH*KTAAHPQLSSF Trigger: GAATGAAGAGAGTTGAGGATGAGCCGCTGTCTTCAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS-3UTR GCA 90 bp | AGGATAAGAAGACATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCTACACTTCTGAATCATaGAAGGGAGCCCACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: RIRRHSASWRFSTIFLQCYTSES*KGAHGF Trigger: AAAGCCGTGGGCTCCCTTGCATGATTCAGAAGTGTA...GCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATGTCTTCTTATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | TACAAGGATCTATTGGACAACCTTCCAAGGGCTGATTTCAGCTCAGAGAGATATGGCTTTCCAGCTGGCTaGACAGCAGAGTCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: YKDLLDNLPRADFSSERYGFPAG*TAESAA Trigger: AGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCC...ATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCTTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS-3UTR GCA 90 bp | AGGATCTATTGGACAACCTTCCAAGGGCTGATTTCAGCTCAGAGAGATATCAGCTACACTTCTGAATCATaGAAGGGAGCCCACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: RIYWTTFQGLISAQRDISYTSES*KGAHGF Trigger: AAAGCCGTGGGCTCCCTTGCATGATTCAGAAGTGTA...GCTGATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | AGGATCTATTGGACAACCTTCCAAGGGCTGATTTCAGCTCAGAGAGATATCAGCTCGGAAACATCTTCTTaGGCAGGACTTGGCAGACAA | + |
|
Preference number: 4 (lower is better) Translates to: RIYWTTFQGLISAQRDISSETSS*AGLGRQ Trigger: TTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGA...GCTGATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS-3UTR CCA 90 bp | AAGGATCTATTGGACAACCTTCCAAGGGCTGATTTCAGCTCAGAGAGATATCAGGATGCTAACTTCTCCTaGAGGAATCGATCCCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: KDLLDNLPRADFSSERYQDANFS*RNRSQH Trigger: GTGCTGGGATCGATTCCTCCAGGAGAAGTTAGCATC...CTGATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CCA 90 bp | AAGGATCTATTGGACAACCTTCCAAGGGCTGATTTCAGCTCAGAGAGATATCAGTCGGAAACATCTTCTTaGGCAGGACTTGGCAGACAA | + |
|
Preference number: 4 (lower is better) Translates to: KDLLDNLPRADFSSERYQSETSS*AGLGRQ Trigger: TTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGA...CTGATATCTCTCTGAGCTGAAATCAGCCCTTGGAAGGTTGTCCAATAGATCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| 3UTR CAA 72 bp | TTGTGTCAAACACTAAACCATATTTACAAGTCTAATTaGGAACGTGTAAAGTTCCTACAAGCAGAAGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LCQTLNHIYKSN*ERVKFLQAEAG Trigger: CCCAGCTTCTGCTTGTAGGAACTTTACACGTTCCAAATTAGACTTGTAAATATGGTTTAGTGTTTGACACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS CCA 90 bp | CCGGCCTCGGGCTTCTCAGCCTGCGACTCCGGAGGGATGAGGAACTaGACCTCCTCTGTGCTGATGGCGACTTTATCTGGCTGGAGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: PASGFSACDSGGMRN*TSSVLMATLSGWSH Trigger: GTGGCTCCAGCCAGATAAAGTCGCCATCAGCACAGAGGAGGTCCAGTTCCTCATCCCTCCGGAGTCGCAGGCTGAGAAGCCCGAGGCCGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS GCA 90 bp | GGGAGCCCACGGCTTTCCAGCTGGCTGGACAGCAGAGTCTGCTGCTaGTGTATGGCTTTCCCCTGCAGGATGGGAGTCCATGAAGGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: GSPRLSSWLDSRVCC*CMAFPCRMGVHEGV Trigger: GACTCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGGGCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS GCA 90 bp | CAAGGGAGCCCACGGCTTTCCAGCTGGCTGGACAGCAGAGTCTGCTaGTGCTGTATGGCTTTCCCCTGCAGGATGGGAGTCCATGAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: QGSPRLSSWLDSRVC*CCMAFPCRMGVHEG Trigger: TCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGGGCTCCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS GCA 90 bp | ATGCAAGGGAGCCCACGGCTTTCCAGCTGGCTGGACAGCAGAGTCTaGTGCTGCTGTATGGCTTTCCCCTGCAGGATGGGAGTCCATGAA | + |
|
Preference number: 5 (lower is better) Translates to: MQGSPRLSSWLDSRV*CCCMAFPCRMGVHE Trigger: TTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGGGCTCCCTTGCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS CCA 90 bp | CACGGCTTTCCAGCTGGCTGGACAGCAGAGTCTGCTGCTGCTGTATaGCTTTCCCCTGCAGGATGGGAGTCCATGAAGGAGTCCGAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: HGFPAGWTAESAAAV*LSPAGWESMKESEK Trigger: CTTCTCGGACTCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS CCA 90 bp | TGGACAGCAGAGTCTGCTGCTGCTGTATGGCTTTCCCCTGCAGGATaGGAGTCCATGAAGGAGTCCGAGAAGGCATTGTCGGAAACATCT | + |
|
Preference number: 5 (lower is better) Translates to: WTAESAAAVWLSPAG*ESMKESEKALSETS Trigger: AGATGTTTCCGACAATGCCTTCTCGGACTCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS-3UTR CAA 90 bp | TTATGGTCACCAGGCTGGCAAAGGTTGCTGGCTCCCCTGCCTTGGCGTATCTTTGGCTGGAGCCACCTTTaGAAATGTTCCAAGGTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: LWSPGWQRLLAPLPWRIFGWSHL*KCSKVL Trigger: GAGCACCTTGGAACATTTCAAAAGGTGGCTCCAGCC...AAAGATACGCCAAGGCAGGGGAGCCAGCAACCTTTGCCAGCCTGGTGACCATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS-3UTR CAA 90 bp | CCCGGGGGCCAGCAGCTGTTTGCTTTGTGGAGTGGAAGTCTGGGCTTTTTCCCCGTTCGAAGCATGTCCTaGGAAGTTACTTCCTCATTT | + |
|
Preference number: 5 (lower is better) Translates to: PGGQQLFALWSGSLGFFPVRSMS*EVTSSF Trigger: AAATGAGGAAGTAACTTCCAAGGACATGCTTCGAAC...GGGGAAAAAGCCCAGACTTCCACTCCACAAAGCAAACAGCTGCTGGCCCCCGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
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| CDS CCA 90 bp | GAGTCCATGAAGGAGTCCGAGAAGGCATTGTCGGAAACATCTTCTTaGGCAGGACTTGGCAGACAAGAACAAATTTCAGCCCAGAGATCC | + |
|
Preference number: 5 (lower is better) Translates to: ESMKESEKALSETSS*AGLGRQEQISAQRS Trigger: GGATCTCTGGGCTGAAATTTGTTCTTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGACAATGCCTTCTCGGACTCCTTCATGGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS CCA 90 bp | GCTAACTTCTCCTGGAGGAATCGATCCCAGCACTCCTTCTTAGCTTaGGCCAGAGTTCGAAGCATGTCCTTGGAAGTTACTTCCTCATTT | + |
|
Preference number: 5 (lower is better) Translates to: ANFSWRNRSQHSFLA*ARVRSMSLEVTSSF Trigger: AAATGAGGAAGTAACTTCCAAGGACATGCTTCGAACTCTGGCCCAAGCTAAGAAGGAGTGCTGGGATCGATTCCTCCAGGAGAAGTTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS-3UTR CAA 90 bp | CATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTACACTTGGTTCGAAGCATGTCCTaGGAAGTTACTTCCTCATTT | + |
|
Preference number: 5 (lower is better) Translates to: HSASWRFSTIFLQCRVHLVRSMS*EVTSSF Trigger: AAATGAGGAAGTAACTTCCAAGGACATGCTTCGAAC...CAAGTGTACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS GCA 90 bp | CTTCTTAGTTTCTTCTCTAGAGATGCTAAATACACTTCTGAATCATaGAAGGGAGCCCACGGCTTTCCAGCTGGCTGGACAGCAGAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: LLSFFSRDAKYTSES*KGAHGFPAGWTAES Trigger: AGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGGGCTCCCTTGCATGATTCAGAAGTGTATTTAGCATCTCTAGAGAAGAAACTAAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS-3UTR CAA 90 bp | AGAAGACATAGCGCTAGCTGGCGCTTCAGTACCATCTTTCTCCAGTGCAGGGTAGTTCGAAGCATGTCCTaGGAAGTTACTTCCTCATTT | + |
|
Preference number: 5 (lower is better) Translates to: RRHSASWRFSTIFLQCRVVRSMS*EVTSSF Trigger: AAATGAGGAAGTAACTTCCAAGGACATGCTTCGAAC...TACCCTGCACTGGAGAAAGATGGTACTGAAGCGCCAGCTAGCGCTATGTCTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS GCA 72 bp | CCACGGCTTTCCAGCTGGCTGGACAGCAGAGTCTGCTaGTGCTGTATGGCTTTCCCCTGCAGGATGGGAGTC | + |
|
Preference number: 6 (lower is better) Translates to: PRLSSWLDSRVC*CCMAFPCRMGV Trigger: GACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS GCA 72 bp | AGCCCACGGCTTTCCAGCTGGCTGGACAGCAGAGTCTaGTGCTGCTGTATGGCTTTCCCCTGCAGGATGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SPRLSSWLDSRV*CCCMAFPCRMG Trigger: TCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGGAAAGCCGTGGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS CCA 72 bp | CCAGCTGGCTGGACAGCAGAGTCTGCTGCTGCTGTATaGCTTTCCCCTGCAGGATGGGAGTCCATGAAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PAGWTAESAAAV*LSPAGWESMKE Trigger: CTCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTCTGCTGTCCAGCCAGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS CCA 72 bp | GGCTTCTCAGCCTGCGACTCCGGAGGGATGAGGAACTaGACCTCCTCTGTGCTGATGGCGACTTTATCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: GFSACDSGGMRN*TSSVLMATLSG Trigger: GCCAGATAAAGTCGCCATCAGCACAGAGGAGGTCCAGTTCCTCATCCCTCCGGAGTCGCAGGCTGAGAAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS CCA 72 bp | GAGTCTGCTGCTGCTGTATGGCTTTCCCCTGCAGGATaGGAGTCCATGAAGGAGTCCGAGAAGGCATTGTCG | + |
|
Preference number: 6 (lower is better) Translates to: ESAAAVWLSPAG*ESMKESEKALS Trigger: CGACAATGCCTTCTCGGACTCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAGCAGCAGACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS TCA 72 bp | CTGCTGTATGGCTTTCCCCTGCAGGATGGGAGTCCATaGAGGAGTCCGAGAAGGCATTGTCGGAAACATCTT | + |
|
Preference number: 6 (lower is better) Translates to: LLYGFPLQDGSP*RSPRRHCRKHL Trigger: AAGATGTTTCCGACAATGCCTTCTCGGACTCCTTCATGGACTCCCATCCTGCAGGGGAAAGCCATACAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS CAA 90 bp | AGGAGTCCGAGAAGGCATTGTCGGAAACATCTTCTTGGGCAGGACTaGGCAGACAAGAACAAATTTCAGCCCAGAGATCCCGGCCAGACT | + |
|
Preference number: 6 (lower is better) Translates to: RSPRRHCRKHLLGQD*ADKNKFQPRDPGQT Trigger: AGTCTGGCCGGGATCTCTGGGCTGAAATTTGTTCTTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGACAATGCCTTCTCGGACTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS CAA 90 bp | CTTTCCCCTGCAGGATGGGAGTCCATGAAGGAGTCCGAGAAGGCATaGTCGGAAACATCTTCTTGGGCAGGACTTGGCAGACAAGAACAA | + |
|
Preference number: 6 (lower is better) Translates to: LSPAGWESMKESEKA*SETSSWAGLGRQEQ Trigger: TTGTTCTTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGACAATGCCTTCTCGGACTCCTTCATGGACTCCCATCCTGCAGGGGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
||
| CDS CCA 72 bp | GAACTGGACCTCCTCTGTGCTGATGGCGACTTTATCTaGCTGGAGCCACCTTTTGAAATGTTCCAAGGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: ELDLLCADGDFI*LEPPFEMFQGA Trigger: AGCACCTTGGAACATTTCAAAAGGTGGCTCCAGCCAGATAAAGTCGCCATCAGCACAGAGGAGGTCCAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036470.14 |
||
| CDS CAA 90 bp | GGAGTCCATGAAGGAGTCCGAGAAGGCATTGTCGGAAACATCTTCTaGGGCAGGACTTGGCAGACAAGAACAAATTTCAGCCCAGAGATC | + |
|
Preference number: 6 (lower is better) Translates to: GVHEGVREGIVGNIF*GRTWQTRTNFSPEI Trigger: GATCTCTGGGCTGAAATTTGTTCTTGTCTGCCAAGTCCTGCCCAAGAAGATGTTTCCGACAATGCCTTCTCGGACTCCTTCATGGACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS GCA 72 bp | TTCTTCTCTAGAGATGCTAAATACACTTCTGAATCATaGAAGGGAGCCCACGGCTTTCCAGCTGGCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: FFSRDAKYTSES*KGAHGFPAGWT Trigger: TGTCCAGCCAGCTGGAAAGCCGTGGGCTCCCTTGCATGATTCAGAAGTGTATTTAGCATCTCTAGAGAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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| CDS CAA 90 bp | TCCCAGCACTCCTTCTTAGCTTGGGCCAGAGTTCGAAGCATGTCCTaGGAAGTTACTTCCTCATTTAAACCTTTGATTCTTCTTAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: SQHSFLAWARVRSMS*EVTSSFKPLILLSF Trigger: GAAACTAAGAAGAATCAAAGGTTTAAATGAGGAAGTAACTTCCAAGGACATGCTTCGAACTCTGGCCCAAGCTAAGAAGGAGTGCTGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036470.14 ENSMUST00000110833.2 ENSMUST00000110834.8 |
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