Pregenerated sensors for CCDC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026676Ensembl transcript IDs: ENSMUST00000027988.8
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGCCAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTaGCAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAG | + |
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Preference number: 1 (lower is better) Translates to: PAKGTNLSPPLPILM*QEGLLTEAWTSCKQ Trigger: CTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTGGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 90 bp | TTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTaGAGTCAAATGGCCAGTAAGGCCAGGACCCAATGGGAAAGAAAG | + |
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Preference number: 1 (lower is better) Translates to: LCGTRTERGHVAHGI*SQMASKARTQWERK Trigger: CTTTCTTTCCCATTGGGTCCTGGCCTTACTGGCCATTTGACTTCAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR GCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTTGGGTCAGAGGCTTGGAGGTTaGATAGAAGCTTGGGTTAGAATCCCTGGACAAAGCCCTTTGGGA | + |
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Preference number: 1 (lower is better) Translates to: CVCVCVCVLGQRLGG*IEAWVRIPGQSPLG Trigger: TCCCAAAGGGCTTTGTCCAGGGATTCTAACCCAAGCTTCTATGCAACCTCCAAGCCTCTGACCCAACACACACACACACACACACACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 90 bp | ATAGCACTGCTTAAAGAGGCTGAGTGGGGGAGAGTGGATGAAGATTaGTCCCAGAATAGAAGTTCCTTCCCATCATGCCCTGACCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: IALLKEAEWGRVDED*SQNRSSFPSCPDQP Trigger: TGGCTGGTCAGGGCATGATGGGAAGGAACTTCTATTCTGGGACCAATCTTCATCCACTCTCCCCCACTCAGCCTCTTTAAGCAGTGCTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR GCA 90 bp | AACACGAGAAAAGGCAGAACATTCCAGAACATTTTAGAACACGCATaGGTGTGCCAACCCTGGTTGCTGAGCCTCAACACCGACTCCCTT | + |
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Preference number: 1 (lower is better) Translates to: NTRKGRTFQNILEHA*VCQPWLLSLNTDSL Trigger: AAGGGAGTCGGTGTTGAGGCTCAGCAACCAGGGTTGGCACACGCATGCGTGTTCTAAAATGTTCTGGAATGTTCTGCCTTTTCTCGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 90 bp | GCCAGACTCAAGATACTATTGCCTTCCGGTTTTAAGGCTCTTGTGTaGCACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTGAAG | + |
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Preference number: 1 (lower is better) Translates to: ARLKILLPSGFKALV*HQDRKRTCGTWDLK Trigger: CTTCAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGGCAATAGTATCTTGAGTCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 90 bp | ATGCAAATACTTCTATGGGGTACACGTAGACCTTTTATGAGAACCTaGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: MQILLWGTRRPFMRT*AVCVCVCVCVCVCV Trigger: CACACACACACACACACACACACACACACACACACACACTGCTCAGGTTCTCATAAAAGGTCTACGTGTACCCCATAGAAGTATTTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 90 bp | CAGTTAGACTCTACCAAATGCCAAATGGATAGCTACTATAATGTTTaGAGTAAGTGCATATATAGAGCTTGCGGTTGTTCTCAGTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: QLDSTKCQMDSYYNV*SKCIYRACGCSQSA Trigger: GGCTGACTGAGAACAACCGCAAGCTCTATATATGCACTTACTTCAAACATTATAGTAGCTATCCATTTGGCATTTGGTAGAGTCTAACTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAGAAAGGCGGCAGTGCCAACCCTGGTTGCTaGGCCTCAACACCGACTCCC | + |
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Preference number: 2 (lower is better) Translates to: QEGLLTEAWTSCKQKGGSANPGC*ASTPTP Trigger: GGGAGTCGGTGTTGAGGCTCAGCAACCAGGGTTGGC...ACTGCCGCCTTTCTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAGAAAGGCGGCAGTTGTGTGTGTGTGTGTTaGGTCAGAGGCTTGGAGGTT | + |
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Preference number: 2 (lower is better) Translates to: QEGLLTEAWTSCKQKGGSCVCVC*VRGLEV Trigger: AACCTCCAAGCCTCTGACCCAACACACACACACACA...ACTGCCGCCTTTCTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAGAAAGGCGGCAGTAACACAAATGGGACATaGTCAAACATGGCCATGGGA | + |
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Preference number: 2 (lower is better) Translates to: QEGLLTEAWTSCKQKGGSNTNGT*SNMAMG Trigger: TCCCATGGCCATGTTTGATCATGTCCCATTTGTGTT...ACTGCCGCCTTTCTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAGAAAGGCGGCAGTGTTCTAGGTGGTCAATaGTGTAGAGCTGAAGGATTC | + |
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Preference number: 2 (lower is better) Translates to: QEGLLTEAWTSCKQKGGSVLGGQ*CRAEGF Trigger: GAATCCTTCAGCTCTACACCATTGACCACCTAGAAC...ACTGCCGCCTTTCTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CCA 90 bp | CCTTCCGGTTTTAAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCAAGGCCAGGACCCAATaGGAAAGAAAGCAAAACCTG | + |
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Preference number: 2 (lower is better) Translates to: PSGFKALVWHQDRKRTCGKARTQ*ERKQNL Trigger: CAGGTTTTGCTTTCTTTCCCATTGGGTCCTGGCCTT...GCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTCCTTTTATGAGAACCTaGGCAGTGTGTGTGTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: QGHKLIPTPTNTHVTGGTPFMRT*AVCVCV Trigger: CACACACACACACACTGCTCAGGTTCTCATAAAAGG...AGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTGCATATATAGAGCTTaGGGTTGTTCTCAGTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: QGHKLIPTPTNTHVTGGTCIYRA*GCSQSA Trigger: GGCTGACTGAGAACAACCGCAAGCTCTATATATGCA...AGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CCA 90 bp | GCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTCTCACAGAAAGAGGACATGTaGCACATGGGATCTGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: AQTYPHPYQYSCDRRDFSQKEDM*HMGSEV Trigger: GACTTCAGATCCCATGTGCCACATGTCCTCTTTCTG...TGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCGGTTTTAAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCAAAGAAAGCAAAACCTaGCAATTTACCCAGTTAGAC | + |
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Preference number: 2 (lower is better) Translates to: PSGFKALVWHQDRKRTCGKESKT*QFTQLD Trigger: GTCTAACTGGGTAAATTGTCAGGTTTTGCTTTCTTT...GCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTCCTGCAAGCAGAAAGGCGGCAGTGTGACAGTAATGACCACTTTTATCAGTAAGGATTCTTTCTATTaGTGGAACAGTGTGGCACGG | + |
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Preference number: 2 (lower is better) Translates to: TSCKQKGGSVTVMTTFISKDSFY*WNSVAR Trigger: CCGTGCCACACTGTTCCACCAATAGAAAGAATCCTT...ACTGATAAAAGTGGTCATTACTGTCACACTGCCGCCTTTCTGCTTGCAGGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR GCA 90 bp | GATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCGACTCAAGATACTATTaGCTTCCGGTTTTAAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: DIIYLYQLLAASAPRPVPDSRYY*LPVLRL Trigger: GAGCCTTAAAACCGGAAGGCAATAGTATCTTGAGTC...GGGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR GCA 90 bp | GATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCTTAGACTCTACCAAATaGCAAATGGATAGCTACTAT | + |
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Preference number: 2 (lower is better) Translates to: DIIYLYQLLAASAPRPVPLDSTK*QMDSYY Trigger: ATAGTAGCTATCCATTTGGCATTTGGTAGAGTCTAA...GGGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAGAAAGGCGGCAGTGTGTGTGTGTGTGTGTaGGGTCAGAGGCTTGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: QEGLLTEAWTSCKQKGGSVCVCV*GQRLGG Trigger: ACCTCCAAGCCTCTGACCCAACACACACACACACAC...ACTGCCGCCTTTCTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 72 bp | GGCACAAACTTATCCCCACCCCTACCAATACTCATGTaGCAGGAGGGACTTCTCACAGAGGCCTGGACTTCC | + |
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Preference number: 3 (lower is better) Translates to: GTNLSPPLPILM*QEGLLTEAWTS Trigger: GGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 72 bp | ACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTaGAGTCAAATGGCCAGTAAGGCCAGGACCCAATGG | + |
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Preference number: 3 (lower is better) Translates to: TRTERGHVAHGI*SQMASKARTQW Trigger: CCATTGGGTCCTGGCCTTACTGGCCATTTGACTTCAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 72 bp | GGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTaGCACATGGGATCTGAAGTCAAATGGCCAGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: GSCVAPGQKEDM*HMGSEVKWPVR Trigger: CCTTACTGGCCATTTGACTTCAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR GCA 72 bp | GTGTGTGTGTGTGTGTTGGGTCAGAGGCTTGGAGGTTaGATAGAAGCTTGGGTTAGAATCCCTGGACAAAGC | + |
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Preference number: 3 (lower is better) Translates to: VCVCVLGQRLGG*IEAWVRIPGQS Trigger: GCTTTGTCCAGGGATTCTAACCCAAGCTTCTATGCAACCTCCAAGCCTCTGACCCAACACACACACACACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 72 bp | CAGAACATTTTAGAACACGCATGCGTGTGCCAACCCTaGTTGCTGAGCCTCAACACCGACTCCCTTCTGAAA | + |
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Preference number: 3 (lower is better) Translates to: QNILEHACVCQP*LLSLNTDSLLK Trigger: TTTCAGAAGGGAGTCGGTGTTGAGGCTCAGCAACCAGGGTTGGCACACGCATGCGTGTTCTAAAATGTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR GCA 72 bp | GGGAGCTGTTTCTGCAGAGTAGAAAGTCTCAGTGTGTaGAAGTCAGTGACCTTAAACTCGGAGCCATGGCAA | + |
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Preference number: 3 (lower is better) Translates to: GSCFCRVESLSV*KSVTLNSEPWQ Trigger: TTGCCATGGCTCCGAGTTTAAGGTCACTGACTTGCACACACTGAGACTTTCTACTCTGCAGAAACAGCTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 72 bp | AAAGAGGACATGTGGCACATGGGATCTGAAGTCAAATaGCCAGTAAGGCCAGGACCCAATGGGAAAGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: KEDMWHMGSEVK*PVRPGPNGKES Trigger: GCTTTCTTTCCCATTGGGTCCTGGCCTTACTGGCCATTTGACTTCAGATCCCATGTGCCACATGTCCTCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 72 bp | GTCTTAACATCTTTCAGCTTTGGGAGAAATGGTGACTaGAGCACGGGTGGGTGCCCTGCACATTTACACGTA | + |
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Preference number: 3 (lower is better) Translates to: VLTSFSFGRNGD*STGGCPAHLHV Trigger: TACGTGTAAATGTGCAGGGCACCCACCCGTGCTTCAGTCACCATTTCTCCCAAAGCTGAAAGATGTTAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 72 bp | AAGATACTATTGCCTTCCGGTTTTAAGGCTCTTGTGTaGCACCAGGACAGAAAGAGGACATGTGGCACATGG | + |
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Preference number: 3 (lower is better) Translates to: KILLPSGFKALV*HQDRKRTCGTW Trigger: CCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGGCAATAGTATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR-3UTR CAA 90 bp | GATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCCCGGTTTTAAGGCTCTaGTGTGGCACCAGGACAGAA | + |
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Preference number: 3 (lower is better) Translates to: DIIYLYQLLAASAPRPVPPVLRL*CGTRTE Trigger: TTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGG...GGGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 72 bp | CTTCTATGGGGTACACGTAGACCTTTTATGAGAACCTaGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: LLWGTRRPFMRT*AVCVCVCVCVC Trigger: ACACACACACACACACACACACACACACACTGCTCAGGTTCTCATAAAAGGTCTACGTGTACCCCATAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 72 bp | AGTATCATGTGTCTGGAATGGGTTCTAGGTGGTCAATaGTGTAGAGCTGAAGGATTCTTTCTATTGGTGGAA | + |
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Preference number: 3 (lower is better) Translates to: SIMCLEWVLGGQ*CRAEGFFLLVE Trigger: TTCCACCAATAGAAAGAATCCTTCAGCTCTACACCATTGACCACCTAGAACCCATTCCAGACACATGATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CCA 72 bp | GTAATGACCACTTTTATCAGTATCATGTGTCTGGAATaGGTTCTAGGTGGTCAATGGTGTAGAGCTGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: VMTTFISIMCLE*VLGGQWCRAEG Trigger: TCCTTCAGCTCTACACCATTGACCACCTAGAACCCATTCCAGACACATGATACTGATAAAAGTGGTCATTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR TCA 72 bp | TCTACCAAATGCCAAATGGATAGCTACTATAATGTTTaGAGTAAGTGCATATATAGAGCTTGCGGTTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: STKCQMDSYYNV*SKCIYRACGCS Trigger: AGAACAACCGCAAGCTCTATATATGCACTTACTTCAAACATTATAGTAGCTATCCATTTGGCATTTGGTAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR GCA 90 bp | AAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTGCCAGGCACCTCGGGGTaGAGCGCCAGCACCTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: KALVWHQDRKRTCGTWDLPGTSG*SASTLA Trigger: TGCCAAGGTGCTGGCGCTGCACCCCGAGGTGCCTGG...CAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR CCA 90 bp | CCTTCCGGTTTTAAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCGCAGCGCCAGCACCTTaGCATACACGATGGTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: PSGFKALVWHQDRKRTCGAAPAP*HTRWSR Trigger: CCGAGACCATCGTGTATGCCAAGGTGCTGGCGCTGC...GCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR TCA 90 bp | CCTTCCGGTTTTAAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCGCACCGAGGAGCACATaGGCCTGTTGTCTTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: PSGFKALVWHQDRKRTCGAPRST*ACCLPG Trigger: TCCAGGAAGACAACAGGCTCATGTGCTCCTCGGTGC...GCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR GCA 90 bp | GCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTCTCAACCCGCTCTCGGAGCTaGCTGTTCCGCTTCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: AQTYPHPYQYSCDRRDFSTRSRS*LFRFSR Trigger: CCTGGAGAAGCGGAACAGGCAGCTCCGAGAGCGGGT...TGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR CCA 90 bp | CAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTTCACCAGCTCCAGGTaGCGGCTGTTCTTCCGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QGHKLIPTPTNTHVTGGTFTSSR*RLFFRA Trigger: GGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAA...AGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR CCA 90 bp | AAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTGTGTGCTGCTGAGCACTaGAGGCCCCTAGCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: KALVWHQDRKRTCGTWDLCAAEH*RPLASH Trigger: ATGAGAAGCTAGGGGCCTCCAGTGCTCAGCAGCACA...CAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR GCA 90 bp | CAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTAGGGTGGCCACCTTCTaGTGCAGCTTCTTGACATGG | + |
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Preference number: 4 (lower is better) Translates to: QGHKLIPTPTNTHVTGGTRVATF*CSFLTW Trigger: CCATGTCAAGAAGCTGCAGCAGAAGGTGGCCACCCT...AGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR GCA 90 bp | GCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTCTCATCAAACAGGGCCTTCTaGACCGAGGAGCACATGAGC | + |
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Preference number: 4 (lower is better) Translates to: AQTYPHPYQYSCDRRDFSSNRAF*TEEHMS Trigger: GCTCATGTGCTCCTCGGTGCAGAAGGCCCTGTTTGA...TGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR GCA 90 bp | ACTTCCTGCAAGCAGAAAGGCGGCAGTGTGACAGTAATGACCACTTTTATCAGTGCACCTCCAACATACTaGCCCACGCCTGGTCACACA | + |
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Preference number: 4 (lower is better) Translates to: TSCKQKGGSVTVMTTFISAPPTY*PTPGHT Trigger: TGTGTGACCAGGCGTGGGGCAGTATGTTGGAGGTGC...ACTGATAAAAGTGGTCATTACTGTCACACTGCCGCCTTTCTGCTTGCAGGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR CCA 90 bp | AAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTGGTTCTCCTGGGTGTCTaGAAAGATGGCATCTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: KALVWHQDRKRTCGTWDLVLLGV*KDGILE Trigger: TTCCAAGATGCCATCTTTCCAGACACCCAGGAGAAC...CAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| CDS-3UTR CCA 90 bp | CAGGAGGGACTTCTCACAGAGGCCTGGACTTCCTGCAAGCAGAAAGGCGGCAGTGAACAGTTAGCAAACTaGAAAAGGCTGGAAAACATC | + |
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Preference number: 4 (lower is better) Translates to: QEGLLTEAWTSCKQKGGSEQLAN*KRLENI Trigger: GATGTTTTCCAGCCTTTTCCAGTTTGCTAACTGTTC...ACTGCCGCCTTTCTGCTTGCAGGAAGTCCAGGCCTCTGTGAGAAGTCCCTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CAA 72 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTaGGGTCAGAGGCTTGGAGGTTGCATAGAAGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: CVCVCVCVCVCV*GQRLGGCIEAW Trigger: CCAAGCTTCTATGCAACCTCCAAGCCTCTGACCCAACACACACACACACACACACACACACACACACACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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| 3UTR CAA 72 bp | ACAGTTCTCCGAGTCCTGACTCCATCACCCCTAAGCTaGCCATTCATTCCCTTGGGAGGTAACAAAAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: TVLRVLTPSPLS*PFIPLGGNKSA Trigger: AGCGCTTTTGTTACCTCCCAAGGGAATGAATGGCAAGCTTAGGGGTGATGGAGTCAGGACTCGGAGAACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| 3UTR CAA 72 bp | GGTGGTCAATGGTGTAGAGCTGAAGGATTCTTTCTATaGGTGGAACAGTGTGGCACGGCATTAGATCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GGQWCRAEGFFL*VEQCGTALDLE Trigger: CTCCAGATCTAATGCCGTGCCACACTGTTCCACCAATAGAAAGAATCCTTCAGCTCTACACCATTGACCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR TCA 90 bp | GATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCTCTGCTGCAGCTTCTTaGCATGGTCCTCTTCCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: DIIYLYQLLAASAPRPVPSAAAS*HGPLPQ Trigger: TTGAGGAAGAGGACCATGTCAAGAAGCTGCAGCAGA...GGGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR TCA 90 bp | ACTTCCTGCAAGCAGAAAGGCGGCAGTGTGACAGTAATGACCACTTTTATCAGTCCCCTAGCTTCTCATTaGGTTTTTGGTTCACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: TSCKQKGGSVTVMTTFISPLASH*VFGSPA Trigger: AGCTGGTGAACCAAAAACTCAATGAGAAGCTAGGGG...ACTGATAAAAGTGGTCATTACTGTCACACTGCCGCCTTTCTGCTTGCAGGAAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CCA 90 bp | ACTTCCTGCAAGCAGAAAGGCGGCAGTGTGACAGTAATGACCACTTTTATCAGTATCCTTCTGTTCTCCTaGGTGTCTGGAAAGATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TSCKQKGGSVTVMTTFISILLFS*VSGKMA Trigger: TGCCATCTTTCCAGACACCCAGGAGAACAGAAGGAT...ACTGATAAAAGTGGTCATTACTGTCACACTGCCGCCTTTCTGCTTGCAGGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CCA 90 bp | GATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCTTCTCATTGAGTTTTTaGTTCACCAGCTCCAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: DIIYLYQLLAASAPRPVPFSLSF*FTSSRW Trigger: CCACCTGGAGCTGGTGAACCAAAAACTCAATGAGAA...GGGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CCA 90 bp | TTACCTGTAATGAACTCATTAAGTCTTAACATCTTTCAGCTTTGGGAGAAATGGAGCCTGTTGTCTTCCTaGACCTCCCAGTCACTCGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPVMNSLSLNIFQLWEKWSLLSS*TSQSLE Trigger: CTCGAGTGACTGGGAGGTCCAGGAAGACAACAGGCT...CCATTTCTCCCAAAGCTGAAAGATGTTAAGACTTAATGAGTTCATTACAGGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| 3UTR CAA 72 bp | TTTTTCCACAGCCATTGGAAGCACTGCTCATGTTTATaGGAAAAGCAGAACATAAGACATCTTCGGCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: FFHSHWKHCSCL*EKQNIRHLRLP Trigger: TGGAAGCCGAAGATGTCTTATGTTCTGCTTTTCCAATAAACATGAGCAGTGCTTCCAATGGCTGTGGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| 3UTR CAA 72 bp | AAGGATAGTGAAAGCACTCTTATTAAAAGAAAGTGTTaGTTATGCAAATACTTCTATGGGGTACACGTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: KDSESTLIKRKC*LCKYFYGVHVD Trigger: GTCTACGTGTACCCCATAGAAGTATTTGCATAACAAACACTTTCTTTTAATAAGAGTGCTTTCACTATCCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 90 bp | GGCCAGGCACCTCGGGGTGCAGCGCCAGCACCTTGGCATACACGATaGTCTCGGCTAGCTCGGCGCGGCAGCCTTCGCTCAAGGGTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GQAPRGAAPAPWHTR*SRLARRGSLRSRVS Trigger: GGAGACCCTTGAGCGAAGGCTGCCGCGCCGAGCTAGCCGAGACCATCGTGTATGCCAAGGTGCTGGCGCTGCACCCCGAGGTGCCTGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 90 bp | GGTAGTTGTAGAGGCCAGGCACCTCGGGGTGCAGCGCCAGCACCTTaGCATACACGATGGTCTCGGCTAGCTCGGCGCGGCAGCCTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: GSCRGQAPRGAAPAP*HTRWSRLARRGSLR Trigger: GCGAAGGCTGCCGCGCCGAGCTAGCCGAGACCATCGTGTATGCCAAGGTGCTGGCGCTGCACCCCGAGGTGCCTGGCCTCTACAACTACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | GCCTGCCTCAGAGACCTCTTGACCTTCTTGACCCGCTCTCGGAGCTaGCTGTTCCGCTTCTCCAGGGTGGCCACCTTCTGCTGCAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: ACLRDLLTFLTRSRS*LFRFSRVATFCCSF Trigger: GAAGCTGCAGCAGAAGGTGGCCACCCTGGAGAAGCGGAACAGGCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | CAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTCCCAGACCAGTAAGGTaGAGCCGGGAGCCGGCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: QGHKLIPTPTNTHVTGGTPRPVR*SREPAG Trigger: GCCCGCCGGCTCCCGGCTCAACCTTACTGGTCTGGG...AGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | TCTCGGAGCTGCCTGTTCCGCTTCTCCAGGGTGGCCACCTTCTGCTaGAGCTTCTTGACATGGTCCTCTTCCTCAAACAGGGCCTTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SRSCLFRFSRVATFC*SFLTWSSSSNRAFC Trigger: GCAGAAGGCCCTGTTTGAGGAAGAGGACCATGTCAAGAAGCTGCAGCAGAAGGTGGCCACCCTGGAGAAGCGGAACAGGCAGCTCCGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | AGTTTTTGGTTCACCAGCTCCAGGTGGCGGCTGTTCTTCCGTGCCTaGCTCAGAGACCTCTTGACCTTCTTGACCCGCTCTCGGAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SFWFTSSRWRLFFRA*LRDLLTFLTRSRSC Trigger: GCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAACCAAAAACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | TGCTGCAGCTTCTTGACATGGTCCTCTTCCTCAAACAGGGCCTTCTaGACCGAGGAGCACATGAGCCTGTTGTCTTCCTGGACCTCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: CCSFLTWSSSSNRAF*TEEHMSLLSSWTSQ Trigger: CTGGGAGGTCCAGGAAGACAACAGGCTCATGTGCTCCTCGGTGCAGAAGGCCCTGTTTGAGGAAGAGGACCATGTCAAGAAGCTGCAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | ATTGAGTTTTTGGTTCACCAGCTCCAGGTGGCGGCTGTTCTTCCGTaGCTGCCTCAGAGACCTCTTGACCTTCTTGACCCGCTCTCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: IEFLVHQLQVAAVLP*LPQRPLDLLDPLSE Trigger: CTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAACCAAAAACTCAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 90 bp | GAGGCCCCTAGCTTCTCATTGAGTTTTTGGTTCACCAGCTCCAGGTaGCGGCTGTTCTTCCGTGCCTGCCTCAGAGACCTCTTGACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EAPSFSLSFWFTSSR*RLFFRACLRDLLTF Trigger: GAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAACCAAAAACTCAATGAGAAGCTAGGGGCCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | GCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTCTCAGACCTCTTGACCTTCTaGACCCGCTCTCGGAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: AQTYPHPYQYSCDRRDFSDLLTF*TRSRSC Trigger: GCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTC...TGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | CTGTTGTCTTCCTGGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTaGTGCCCTTGGGAACAGTTAGCAAACTGGAAAAGGCTGGAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: LLSSWTSQSLEKVVS*CPWEQLANWKRLEN Trigger: GTTTTCCAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGAAGACAACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 90 bp | TCCTGGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTGCTGCCCTTaGGAACAGTTAGCAAACTGGAAAAGGCTGGAAAACATCCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SWTSQSLEKVVSCCP*EQLANWKRLENILL Trigger: CAGAAGGATGTTTTCCAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | GCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTCTCACGTCAGCTGCTGCCCTaGGGAACAGTTAGCAAACTG | + |
|
Preference number: 5 (lower is better) Translates to: AQTYPHPYQYSCDRRDFSRQLLP*GTVSKL Trigger: CAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACG...TGAGAAGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | CCTTCCGGTTTTAAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCTTCTGCTGCAGCTTCTaGACATGGTCCTCTTCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: PSGFKALVWHQDRKRTCGFCCSF*TWSSSS Trigger: TGAGGAAGAGGACCATGTCAAGAAGCTGCAGCAGAA...GCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTTAAAACCGGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 90 bp | TTGTCTTCCTGGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTGCTaGCCTTGGGAACAGTTAGCAAACTGGAAAAGGCTGGAAAACATC | + |
|
Preference number: 5 (lower is better) Translates to: LSSWTSQSLEKVVSC*PWEQLANWKRLENI Trigger: GATGTTTTCCAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGAAGACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | AGATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCCCTCCCTCTCCAGCTaGGTACTGCCACGGCAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: RYNLSLPITSCLSSSPSSPSLSS*VLPRQV Trigger: TACCTGCCGTGGCAGTACCAAGCTGGAGAGGGAGGG...GGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | AAGGCTCTTGTGTGGCACCAGGACAGAAAGAGGACATGTGGCACATGGGATCTGATGGCATCTTGGAAATaGACTCCGTGTGGCAAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: KALVWHQDRKRTCGTWDLMASWK*TPCGKR Trigger: TCTCTTGCCACACGGAGTCAATTTCCAAGATGCCAT...CAGATCCCATGTGCCACATGTCCTCTTTCTGTCCTGGTGCCACACAAGAGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | AGATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCTGCAGCGCCAGCACCTaGGCATACACGATGGTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: RYNLSLPITSCLSSSPSSCSAST*AYTMVS Trigger: CGAGACCATCGTGTATGCCAAGGTGCTGGCGCTGCA...GGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | CAAGGGCACAAACTTATCCCCACCCCTACCAATACTCATGTGACAGGAGGGACTTGGAAAGATGGCATCTaGGAAATTGACTCCGTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: QGHKLIPTPTNTHVTGGTWKDGI*EIDSVW Trigger: CCACACGGAGTCAATTTCCAAGATGCCATCTTTCCA...AGTCCCTCCTGTCACATGAGTATTGGTAGGGGTGGGGATAAGTTTGTGCCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 90 bp | AAACTGGAAAAGGCTGGAAAACATCCTTCTGTTCTCCTGGGTGTCTaGAAAGATGGCATCTTGGAAATTGACTCCGTGTGGCAAGAGATT | + |
|
Preference number: 5 (lower is better) Translates to: KLEKAGKHPSVLLGV*KDGILEIDSVWQEI Trigger: AATCTCTTGCCACACGGAGTCAATTTCCAAGATGCCATCTTTCCAGACACCCAGGAGAACAGAAGGATGTTTTCCAGCCTTTTCCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS-3UTR CAA 90 bp | AGATATAATTTATCTTTACCAATTACTAGCTGCCTCAGCTCCTCGCCCAGTTCCCTTCTCATTGAGTTTTaGGTTCACCAGCTCCAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: RYNLSLPITSCLSSSPSSLLIEF*VHQLQV Trigger: CACCTGGAGCTGGTGAACCAAAAACTCAATGAGAAG...GGAACTGGGCGAGGAGCTGAGGCAGCTAGTAATTGGTAAAGATAAATTATATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 72 bp | CCTCGGGGTGCAGCGCCAGCACCTTGGCATACACGATaGTCTCGGCTAGCTCGGCGCGGCAGCCTTCGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: PRGAAPAPWHTR*SRLARRGSLRS Trigger: TGAGCGAAGGCTGCCGCGCCGAGCTAGCCGAGACCATCGTGTATGCCAAGGTGCTGGCGCTGCACCCCGAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 90 bp | CAGCATCTCCACCTCGGCGGAGTAGAAGAGCCCTCCCTCTCCAGCTaGGTACTGCCACGGCAGGTAGTTGTAGAGGCCAGGCACCTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: QHLHLGGVEEPSLSS*VLPRQVVVEARHLG Trigger: CCCGAGGTGCCTGGCCTCTACAACTACCTGCCGTGGCAGTACCAAGCTGGAGAGGGAGGGCTCTTCTACTCCGCCGAGGTGGAGATGCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 90 bp | TGGCGGCTGTTCTTCCGTGCCTGCCTCAGAGACCTCTTGACCTTCTaGACCCGCTCTCGGAGCTGCCTGTTCCGCTTCTCCAGGGTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: WRLFFRACLRDLLTF*TRSRSCLFRFSRVA Trigger: GGCCACCCTGGAGAAGCGGAACAGGCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 90 bp | AGCTCCAGGTGGCGGCTGTTCTTCCGTGCCTGCCTCAGAGACCTCTaGACCTTCTTGACCCGCTCTCGGAGCTGCCTGTTCCGCTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SSRWRLFFRACLRDL*TFLTRSRSCLFRFS Trigger: GGAGAAGCGGAACAGGCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 72 bp | CACCTCGGCGGAGTAGAAGAGCCCTCCCTCTCCAGCTaGGTACTGCCACGGCAGGTAGTTGTAGAGGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: HLGGVEEPSLSS*VLPRQVVVEAR Trigger: CCTGGCCTCTACAACTACCTGCCGTGGCAGTACCAAGCTGGAGAGGGAGGGCTCTTCTACTCCGCCGAGGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 72 bp | AGAGACCTCTTGACCTTCTTGACCCGCTCTCGGAGCTaGCTGTTCCGCTTCTCCAGGGTGGCCACCTTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: RDLLTFLTRSRS*LFRFSRVATFC Trigger: GCAGAAGGTGGCCACCCTGGAGAAGCGGAACAGGCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 72 bp | TTCACCAGCTCCAGGTGGCGGCTGTTCTTCCGTGCCTaGCTCAGAGACCTCTTGACCTTCTTGACCCGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: FTSSRWRLFFRA*LRDLLTFLTRS Trigger: AGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 72 bp | TTGGTTCACCAGCTCCAGGTGGCGGCTGTTCTTCCGTaGCTGCCTCAGAGACCTCTTGACCTTCTTGACCCG | + |
|
Preference number: 6 (lower is better) Translates to: LVHQLQVAAVLP*LPQRPLDLLDP Trigger: CGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAACCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 72 bp | TTCTTCCGTGCCTGCCTCAGAGACCTCTTGACCTTCTaGACCCGCTCTCGGAGCTGCCTGTTCCGCTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: FFRACLRDLLTF*TRSRSCLFRFS Trigger: GGAGAAGCGGAACAGGCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS TCA 72 bp | CTTCCTCAAACAGGGCCTTCTGCACCGAGGAGCACATaGGCCTGTTGTCTTCCTGGACCTCCCAGTCACTCG | + |
|
Preference number: 6 (lower is better) Translates to: LPQTGPSAPRST*ACCLPGPPSHS Trigger: CGAGTGACTGGGAGGTCCAGGAAGACAACAGGCTCATGTGCTCCTCGGTGCAGAAGGCCCTGTTTGAGGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS TCA 72 bp | TGTGCTGCTGAGCACTGGAGGCCCCTAGCTTCTCATTaGGTTTTTGGTTCACCAGCTCCAGGTGGCGGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: CAAEHWRPLASH*VFGSPAPGGGC Trigger: ACAGCCGCCACCTGGAGCTGGTGAACCAAAAACTCAATGAGAAGCTAGGGGCCTCCAGTGCTCAGCAGCACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 72 bp | TGCCTGTTCCGCTTCTCCAGGGTGGCCACCTTCTGCTaGAGCTTCTTGACATGGTCCTCTTCCTCAAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: CLFRFSRVATFC*SFLTWSSSSNR Trigger: CCTGTTTGAGGAAGAGGACCATGTCAAGAAGCTGCAGCAGAAGGTGGCCACCCTGGAGAAGCGGAACAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 72 bp | TTCTGCACCGAGGAGCACATGAGCCTGTTGTCTTCCTaGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: FCTEEHMSLLSS*TSQSLEKVVSC Trigger: GCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGAAGACAACAGGCTCATGTGCTCCTCGGTGCAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 72 bp | AGCTTCTCATTGAGTTTTTGGTTCACCAGCTCCAGGTaGCGGCTGTTCTTCCGTGCCTGCCTCAGAGACCTC | + |
|
Preference number: 6 (lower is better) Translates to: SFSLSFWFTSSR*RLFFRACLRDL Trigger: GAGGTCTCTGAGGCAGGCACGGAAGAACAGCCGCCACCTGGAGCTGGTGAACCAAAAACTCAATGAGAAGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 72 bp | TGGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTGCTaGCCTTGGGAACAGTTAGCAAACTGGAAAAGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: WTSQSLEKVVSC*PWEQLANWKRL Trigger: CAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS GCA 72 bp | TCCTGGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTaGTGCCCTTGGGAACAGTTAGCAAACTGGAAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SWTSQSLEKVVS*CPWEQLANWKR Trigger: CCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 90 bp | TTCCTGGACCTCCCAGTCACTCGAGAAAGTCGTCAGCTGCTGCCCTaGGGAACAGTTAGCAAACTGGAAAAGGCTGGAAAACATCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: FLDLPVTRESRQLLP*GTVSKLEKAGKHPS Trigger: AGAAGGATGTTTTCCAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CCA 72 bp | TCCCAGTCACTCGAGAAAGTCGTCAGCTGCTGCCCTTaGGAACAGTTAGCAAACTGGAAAAGGCTGGAAAAC | + |
|
Preference number: 6 (lower is better) Translates to: SQSLEKVVSCCP*EQLANWKRLEN Trigger: GTTTTCCAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
||
| CDS CAA 72 bp | CTCCCAGTCACTCGAGAAAGTCGTCAGCTGCTGCCCTaGGGAACAGTTAGCAAACTGGAAAAGGCTGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: LPVTRESRQLLP*GTVSKLEKAGK Trigger: TTTTCCAGCCTTTTCCAGTTTGCTAACTGTTCCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027988.8 |
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