RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC28B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028795

Ensembl transcript IDs: ENSMUST00000030586.15, ENSMUST00000106035.8, ENSMUST00000150357.2, ENSMUST00000151838.8

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGGCAGCTGGTCCAGGTTaGGGTCAGCCATTGTCTTCT +
Preference number: 2 (lower is better)
Translates to: LGDTYAAGWSSGSAFSAKAAGPG*GQPLSS
Trigger: AGAAGACAATGGCTGACCGCAACCTGGACCAGCTGC...CTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
3UTR-3UTR CCA 90 bp GGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCC +
Preference number: 2 (lower is better)
Translates to: GSAFSAKCSFCMELLRSSRLLSS*SRLRSA
Trigger: GGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCT...GGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
3UTR CAA 90 bp TCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATaGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: SAKCSFCMELLRSSR*LSSWSRLRSAIVFF
Trigger: GAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
3UTR CCA 72 bp AGAGTAGCAGAAGAGTTTAGGCGACACCTACGCAGCTaGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTG +
Preference number: 3 (lower is better)
Translates to: RVAEEFRRHLRS*LVLRLSILCQV
Trigger: CACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAAACTCTTCTGCTACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
3UTR CCA 72 bp ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTGC +
Preference number: 3 (lower is better)
Translates to: MELLRSSRLLSS*SRLRSAIVFFC
Trigger: GCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CCA 90 bp CAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGGTCTGCGCAGTGTGCCTaGGGCCTGTGCTGGTTGGGT +
Preference number: 4 (lower is better)
Translates to: QNKPGCSGEGLLVELGGGSAQCA*GLCWLG
Trigger: ACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGA...CCCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CCA 90 bp TATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGGGGGCCTGTGCTGGTTaGGTCAGGCAGGGCTTAGGA +
Preference number: 4 (lower is better)
Translates to: YVRGPRTNLDALGKAYWWGACAG*VRQGLG
Trigger: TCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCC...CCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp CAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGGTTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAG +
Preference number: 4 (lower is better)
Translates to: QNKPGCSGEGLLVELGGGLGDGK*GSPRAK
Trigger: CTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAA...CCCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CCA 90 bp TTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGAGCCACTGTGGCTGGTaGGCACAGGGACTCTGCGCA +
Preference number: 4 (lower is better)
Translates to: LCQGTQNKPGCSGEGLLVSHCGW*AQGLCA
Trigger: TGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCT...CACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CCA 90 bp ACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTAAGGAGCCACTGTGGCTaGTGGGCACAGGGACTCTGC +
Preference number: 4 (lower is better)
Translates to: TQLAGPQAQHSLPSVASVRSHCG*WAQGLC
Trigger: GCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCT...TACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CCA 90 bp GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGGCCAAGGAGCCACTGTaGCTGGTGGGCACAGGGACT +
Preference number: 4 (lower is better)
Translates to: VYVRGPRTNLDALGKAYWAKEPL*LVGTGT
Trigger: AGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGC...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp GCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTATTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAG +
Preference number: 4 (lower is better)
Translates to: ATPTQLAGPQAQHSLPSVLGDGK*GSPRAK
Trigger: CTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAA...TACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp GGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCC +
Preference number: 4 (lower is better)
Translates to: GLCQGTQNKPGCSGEGLLGSLLG*WQMRES
Trigger: GGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCC...CAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp TTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGCAGGCAAGCCTTCTGTaGCCCCATCCTCCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: LGDTYAAGWSSGSAFSAKQASLL*PHPPLL
Trigger: AAGAAGAGGAGGATGGGGTCACAGAAGGCTTGCCTG...CTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CCA 90 bp TCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTGCGGGGCCTGTGCTGGTTaGGTCAGGCAGGGCTTAGGA +
Preference number: 4 (lower is better)
Translates to: SRLLSSWSRLRSAIVFFCGACAG*VRQGLG
Trigger: TCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCC...GCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp ACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGCCTGCAGGCGGCCTaGATGAAAATCATTGAGCAA +
Preference number: 4 (lower is better)
Translates to: TQNKPGCSGEGLLVELGGGLQAA*MKIIEQ
Trigger: TTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCC...TCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp CCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGCGAACATGCTCCAGCTaGTCGAAGGAACATTCCTTC +
Preference number: 4 (lower is better)
Translates to: PEQTWMLWGRPTGGAWGRRTCSS*SKEHSF
Trigger: GAAGGAATGTTCCTTCGAGCAGCTGGAGCATGTTCG...CCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp AGAGTAGCAGAAGAGTTTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCCTGGCCAACTTCTCCTaGATCTCCCGAACATGCTCC +
Preference number: 4 (lower is better)
Translates to: RVAEEFRRHLRSWLVLRLLANFS*ISRTCS
Trigger: GGAGCATGTTCGGGAGATGCAGGAGAAGTTGGCCAG...GAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAAACTCTTCTGCTACTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR GCA 90 bp ACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAACATCCAGGCTGAAGTaGAGTCTGGCCAACTTCTCC +
Preference number: 4 (lower is better)
Translates to: TQNKPGCSGEGLLVELGGTSRLK*SLANFS
Trigger: GGAGAAGTTGGCCAGACTGCACTTCAGCCTGGATGT...TCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CCA 90 bp AAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTAAGGAGCCACTGTGGCTaGTGGGCACAGGGACTCTGC +
Preference number: 4 (lower is better)
Translates to: KGLCQGTQNKPGCSGEGLRSHCG*WAQGLC
Trigger: GCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCT...TAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp TTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: LGDTYAAGWSSGSAFSAKCRRPE*KSLSKF
Trigger: GAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCA...CTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR GCA 90 bp ACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTAACATCCAGGCTGAAGTaGAGTCTGGCCAACTTCTCC +
Preference number: 4 (lower is better)
Translates to: TQLAGPQAQHSLPSVASVTSRLK*SLANFS
Trigger: GGAGAAGTTGGCCAGACTGCACTTCAGCCTGGATGT...TACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CCA 90 bp ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCATCTGCGCAGTGTGCCTaGGGCCTGTGCTGGTTGGGT +
Preference number: 4 (lower is better)
Translates to: MELLRSSRLLSSWSRLRSSAQCA*GLCWLG
Trigger: ACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGA...TGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCC +
Preference number: 4 (lower is better)
Translates to: MELLRSSRLLSSWSRLRSGSLLG*WQMRES
Trigger: GGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCC...TGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp CCAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGCCTTGCCTGCTCTCTTaGACTTGGCTCGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: PAVNTEKRFMSGDPEQTWPCLLS*TWLAAW
Trigger: CCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGG...CCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp CAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGGCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: QNKPGCSGEGLLVELGGGLNENH*ASSAVL
Trigger: GAGGACTGCTGAACTTGCTCAATGATTTTCATTCAG...CCCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp CAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGGCATTTCTCCTTGCCTaGTCTCTTGAACTTGGCTCG +
Preference number: 4 (lower is better)
Translates to: QLAGPQAQHSLPSVASVWAFLLA*SLELGS
Trigger: CGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGC...CCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR GCA 90 bp CAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGTCAGGAAGGAGTGTTaGAGGGGTGTGCCTGCGGAG +
Preference number: 4 (lower is better)
Translates to: QHREKVYVRGPRTNLDALVRKEC*RGVPAE
Trigger: CTCCGCAGGCACACCCCTGCAACACTCCTTCCTGAC...CAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp TGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAGTCAGGAAGGAGTGTTaGAGGGGTGTGCCTGCGGAG +
Preference number: 4 (lower is better)
Translates to: WSSGSAFSAKCSFCMELLVRKEC*RGVPAE
Trigger: CTCCGCAGGCACACCCCTGCAACACTCCTTCCTGAC...TAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CCA 90 bp CCAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGTGCCCTCTCCACCCTTaGTGTCCCAGGATCCACAAC +
Preference number: 4 (lower is better)
Translates to: PAVNTEKRFMSGDPEQTWCPLHP*CPRIHN
Trigger: GTTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCA...CCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp TTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: LCQGTQNKPGCSGEGLLVCRRPE*KSLSKF
Trigger: GAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCA...CACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp GCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTGGCCTGCAGGCGGCCTaGATGAAAATCATTGAGCAA +
Preference number: 4 (lower is better)
Translates to: AKIFQIAKQLVQVAVSHCGLQAA*MKIIEQ
Trigger: TTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCC...ACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp AACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGCACACACATCCAGGCTaGAGTGCAGTCTGGCCAACT +
Preference number: 4 (lower is better)
Translates to: NTEKRFMSGDPEQTWMLWHTHPG*SAVWPT
Trigger: AGTTGGCCAGACTGCACTTCAGCCTGGATGTGTGTG...CCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp CAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGACTGGCCAACTTCTCCTaGATCTCCCGAACATGCTCC +
Preference number: 4 (lower is better)
Translates to: QLSTQRKGLCQGTQNKPGLANFS*ISRTCS
Trigger: GGAGCATGTTCGGGAGATGCAGGAGAAGTTGGCCAG...TCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATAGACTTGGGAGCCTGTaGCCTCTCCACCCTTGGTGT +
Preference number: 4 (lower is better)
Translates to: SCQHREKVYVRGPRTNLDRLGSL*PLHPWC
Trigger: ACACCAAGGGTGGAGAGGGCACAGGCTCCCAAGTCT...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CCA 90 bp GCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGGCCAAGGAGCCACTGTaGCTGGTGGGCACAGGGACT +
Preference number: 4 (lower is better)
Translates to: AFSAKCSFCMELLRSSRLAKEPL*LVGTGT
Trigger: AGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGC...CAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CCA 90 bp AACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGACATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: NTEKRFMSGDPEQTWMLWTLLSS*SRLRSA
Trigger: GGCTGACCGCAACCTGGACCAGCTGCTTAGCAATGT...CCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CCA 90 bp CAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGTTTCCATGGGAGACTTaGGAGCCTGTGCCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: QHREKVYVRGPRTNLDALFPWET*EPVPSP
Trigger: TGGAGAGGGCACAGGCTCCCAAGTCTCCCATGGAAA...CAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp GGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCCACACACATCCAGGCTaGAGTGCAGTCTGGCCAACT +
Preference number: 4 (lower is better)
Translates to: GSAFSAKCSFCMELLRSSHTHPG*SAVWPT
Trigger: AGTTGGCCAGACTGCACTTCAGCCTGGATGTGTGTG...GGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp TCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTCAGGCAAGCCTTCTGTaGCCCCATCCTCCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: STQRKGLCQGTQNKPGCSQASLL*PHPPLL
Trigger: AAGAAGAGGAGGATGGGGTCACAGAAGGCTTGCCTG...AGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR TCA 90 bp AACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGCAACAGCCAGCTCTATaGCCCACATTGCTAAGCAGC +
Preference number: 4 (lower is better)
Translates to: NTEKRFMSGDPEQTWMLWQQPAL*PTLLSS
Trigger: GCTGCTTAGCAATGTGGGTCATAGAGCTGGCTGTTG...CCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCAGCTGGTCCAGGTTaGGGTCAGCCATTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: SCQHREKVYVRGPRTNLDAAGPG*GQPLSS
Trigger: AGAAGACAATGGCTGACCGCAACCTGGACCAGCTGC...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp GTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCGCATTTCTCCTTGCCTaGTCTCTTGAACTTGGCTCG +
Preference number: 4 (lower is better)
Translates to: VNTEKRFMSGDPEQTWMLAFLLA*SLELGS
Trigger: CGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGC...GAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR GCA 90 bp AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATTGCATCTCCCGAACATaGTCCAGCTGCTCGAAGGAA +
Preference number: 4 (lower is better)
Translates to: SCQHREKVYVRGPRTNLDCISRT*SSCSKE
Trigger: TTCCTTCGAGCAGCTGGAGCATGTTCGGGAGATGCA...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
3UTR CAA 72 bp GCACCAAGGGGCTTCCGAATCCGTAAAATTCACAGTTaGAAGAGGAGAGTAGCAGAAGAGTTTAGGCGACAC +
Preference number: 4 (lower is better)
Translates to: APRGFRIRKIHS*KRRVAEEFRRH
Trigger: GTGTCGCCTAAACTCTTCTGCTACTCTCCTCTTCAAACTGTGAATTTTACGGATTCGGAAGCCCCTTGGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030586.15
ENSMUST00000151838.8
3UTR CAA 72 bp TCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATaGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCC +
Preference number: 4 (lower is better)
Translates to: SAFSAKCSFCME*LRSSRLLSSWS
Trigger: GGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR TCA 90 bp GCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: AFSAKCSFCMELLRSSRLLNENH*ASSAVL
Trigger: GAGGACTGCTGAACTTGCTCAATGATTTTCATTCAG...CAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS CCA 90 bp GGAGCCACTGTGGCTGGTGGGCACAGGGACTCTGCGCAGTGTGCCTaGGGCCTGTGCTGGTTGGGTCAGGCAGGGCTTAGGACTCCGTTT +
Preference number: 5 (lower is better)
Translates to: GATVAGGHRDSAQCA*GLCWLGQAGLRTPF
Trigger: AAACGGAGTCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS CCA 90 bp GTGATGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTaGTGGGCACAGGGACTCTGCGCAGTGTGCCTGGGGCCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: VMANEGVPEPRSHCG*WAQGLCAVCLGPVL
Trigger: CAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS CCA 90 bp ATGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTGGTaGGCACAGGGACTCTGCGCAGTGTGCCTGGGGCCTGTGCTGGTT +
Preference number: 5 (lower is better)
Translates to: MANEGVPEPRSHCGW*AQGLCAVCLGPVLV
Trigger: AACCAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS GCA 90 bp AACATCTGTCACCTCTGTCAGGAAGGAGTGTTGCAGGGGTGTGCCTaGGGAGCCGCCTCCACCTCCAGCCAGCACCGGTCGGCATTTCTC +
Preference number: 5 (lower is better)
Translates to: NICHLCQEGVLQGCA*GAASTSSQHRSAFL
Trigger: GAGAAATGCCGACCGGTGCTGGCTGGAGGTGGAGGCGGCTCCGCAGGCACACCCCTGCAACACTCCTTCCTGACAGAGGTGACAGATGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS CCA 90 bp GTGGGCACAGGGACTCTGCGCAGTGTGCCTGGGGCCTGTGCTGGTTaGGTCAGGCAGGGCTTAGGACTCCGTTTCTTCTTTTTGTCTTCC +
Preference number: 5 (lower is better)
Translates to: VGTGTLRSVPGACAG*VRQGLGLRFFFLSS
Trigger: GGAAGACAAAAAGAAGAAACGGAGTCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS-3UTR CAA 90 bp CAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGTGCCCTCTCCACCCTaGGTGTCCCAGGATCCACAA +
Preference number: 5 (lower is better)
Translates to: QGTQNKPGCSGEGLLVELVPSPP*VSQDPQ
Trigger: TTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCAC...AAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS TCA 90 bp TTGCCTGCTCTCTTGAACTTGGCTCGCTGCTTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTGGTGGGCACA +
Preference number: 5 (lower is better)
Translates to: LPALLNLARCLGDGK*GSPRAKEPLWLVGT
Trigger: TGTGCCCACCAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS-3UTR CAA 90 bp CCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGTCCTTGCCTGCTCTCTaGAACTTGGCTCGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: PEQTWMLWGRPTGGAWGRSLPAL*NLARCL
Trigger: CAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGA...CCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS TCA 90 bp CCCTCTCCACCCTTGGTGTCCCAGGATCCACAACAGCCAGCTCTATaGCCCACATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATT +
Preference number: 5 (lower is better)
Translates to: PSPPLVSQDPQQPAL*PTLLSSWSRLRSAI
Trigger: AATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATGTGGGTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGGTGGAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS CCA 90 bp CCAACTTTCCATGGGAGACTTGGGAGCCTGTGCCCTCTCCACCCTTaGTGTCCCAGGATCCACAACAGCCAGCTCTATGACCCACATTGC +
Preference number: 5 (lower is better)
Translates to: PTFHGRLGSLCPLHP*CPRIHNSQLYDPHC
Trigger: GCAATGTGGGTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCACAGGCTCCCAAGTCTCCCATGGAAAGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CAA 90 bp GCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTACCTGCTCTCTTGAACTaGGCTCGCTGCTTGGGTGAT +
Preference number: 5 (lower is better)
Translates to: ATPTQLAGPQAQHSLPSVPALLN*ARCLGD
Trigger: ATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGG...TACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CAA 90 bp GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGTCAGGAAGGAGTGTaGCAGGGGTGTGCCTGCGGA +
Preference number: 5 (lower is better)
Translates to: VYVRGPRTNLDALGKAYWCQEGV*QGCACG
Trigger: TCCGCAGGCACACCCCTGCAACACTCCTTCCTGACA...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS TCA 90 bp GCATTTCTCCTTGCCTGCTCTCTTGAACTTGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: AFLLACSLELGSLLG*WQMRESQSQGATVA
Trigger: AGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS-3UTR CAA 90 bp GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGAGCAGCTGGTCCAGGTaGCGGTCAGCCATTGTCTTC +
Preference number: 5 (lower is better)
Translates to: VYVRGPRTNLDALGKAYWSSWSR*RSAIVF
Trigger: GAAGACAATGGCTGACCGCAACCTGGACCAGCTGCT...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS GCA 90 bp TCCCCACACACATCCAGGCTGAAGTGCAGTCTGGCCAACTTCTCCTaGATCTCCCGAACATGCTCCAGCTGCTCGAAGGAACATTCCTTC +
Preference number: 5 (lower is better)
Translates to: SPHTSRLKCSLANFS*ISRTCSSCSKEHSF
Trigger: GAAGGAATGTTCCTTCGAGCAGCTGGAGCATGTTCGGGAGATGCAGGAGAAGTTGGCCAGACTGCACTTCAGCCTGGATGTGTGTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
CDS GCA 90 bp TTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTaGTCCTCAGGCAAGCCTTCTGTGACCCCATCCTCCTCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: LLSSWSRLRSAIVFF*SSGKPSVTPSSSSS
Trigger: GGAAGAAGAGGAGGATGGGGTCACAGAAGGCTTGCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
CDS-3UTR CAA 90 bp GCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTTGTCAGGAAGGAGTGTaGCAGGGGTGTGCCTGCGGA +
Preference number: 5 (lower is better)
Translates to: AKIFQIAKQLVQVAVSHCCQEGV*QGCACG
Trigger: TCCGCAGGCACACCCCTGCAACACTCCTTCCTGACA...ACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS-3UTR CAA 90 bp GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGGGTCGGCATTTCTCCTaGCCTGCTCTCTTGAACTTG +
Preference number: 5 (lower is better)
Translates to: VYVRGPRTNLDALGKAYWGRHFS*PALLNL
Trigger: CAAGTTCAAGAGAGCAGGCAAGGAGAAATGCCGACC...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS-3UTR CAA 90 bp CCAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGCCTGCTCTCTTGAACTaGGCTCGCTGCTTGGGTGAT +
Preference number: 5 (lower is better)
Translates to: PAVNTEKRFMSGDPEQTWPALLN*ARCLGD
Trigger: ATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGG...CCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS CCA 90 bp AGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTGCTCCTCAGGC +
Preference number: 5 (lower is better)
Translates to: SFCMELLRSSRLLSS*SRLRSAIVFFCSSG
Trigger: GCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCATACAGAAGCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030586.15
CDS-3UTR CAA 90 bp AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGGTTGCGGTCAGCCATaGTCTTCTTCTGCTCCTCAG +
Preference number: 5 (lower is better)
Translates to: SCQHREKVYVRGPRTNLDGCGQP*SSSAPQ
Trigger: CTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACC...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS TCA 90 bp AACATGCTCCAGCAAAGGCCTGCAGGCGGCCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTCCCTCCATCTCATAAACATCTGTCA +
Preference number: 5 (lower is better)
Translates to: NMLQQRPAGGLNENH*ASSAVLPPSHKHLS
Trigger: TGACAGATGTTTATGAGATGGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGCTGGAGCATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS TCA 90 bp AACATTCCTTCCCAAAGGCCTGCAGGCGGCCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTCCCTCCATCTCATAAACATCTGTCA +
Preference number: 5 (lower is better)
Translates to: NIPSQRPAGGLNENH*ASSAVLPPSHKHLS
Trigger: TGACAGATGTTTATGAGATGGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGGGAAGGAATGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
CDS-3UTR CAA 90 bp GCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGTCCTTGCCTGCTCTCTaGAACTTGGCTCGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: AFSAKCSFCMELLRSSRLSLPAL*NLARCL
Trigger: CAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGA...CAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS CCA 72 bp CATGGGAGACTTGGGAGCCTGTGCCCTCTCCACCCTTaGTGTCCCAGGATCCACAACAGCCAGCTCTATGAC +
Preference number: 6 (lower is better)
Translates to: HGRLGSLCPLHP*CPRIHNSQLYD
Trigger: GTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCACAGGCTCCCAAGTCTCCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS CAA 72 bp CTCATAAACATCTGTCACCTCTGTCAGGAAGGAGTGTaGCAGGGGTGTGCCTGCGGAGCCGCCTCCACCTCC +
Preference number: 6 (lower is better)
Translates to: LINICHLCQEGV*QGCACGAASTS
Trigger: GGAGGTGGAGGCGGCTCCGCAGGCACACCCCTGCAACACTCCTTCCTGACAGAGGTGACAGATGTTTATGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS TCA 72 bp CTCTTGAACTTGGCTCGCTGCTTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTG +
Preference number: 6 (lower is better)
Translates to: LLNLARCLGDGK*GSPRAKEPLWL
Trigger: CAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS TCA 72 bp CTTGCCTGCTCTCTTGAACTTGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCC +
Preference number: 6 (lower is better)
Translates to: LACSLELGSLLG*WQMRESQSQGA
Trigger: GGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS TCA 72 bp CCCTTGGTGTCCCAGGATCCACAACAGCCAGCTCTATaGCCCACATTGCTAAGCAGCTGGTCCAGGTTGCGG +
Preference number: 6 (lower is better)
Translates to: PLVSQDPQQPAL*PTLLSSWSRLR
Trigger: CCGCAACCTGGACCAGCTGCTTAGCAATGTGGGTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106035.8
CDS TCA 72 bp CCAGCACCGGTCGGCATTTCTCCTTGCCTGCTCTCTTaGACTTGGCTCGCTGCTTGGGTGATGGCAAATGAG +
Preference number: 6 (lower is better)
Translates to: PAPVGISPCLLS*TWLAAWVMANE
Trigger: CTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGCCGACCGGTGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
ENSMUST00000150357.2
ENSMUST00000151838.8
CDS TCA 72 bp GAACATGCTCCAGCAAAGGCCTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTCAGCAGTCCTCCCTCC +
Preference number: 6 (lower is better)
Translates to: EHAPAKACRRPE*KSLSKFSSPPS
Trigger: GGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGCTGGAGCATGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151838.8
CDS TCA 72 bp GAACATTCCTTCCCAAAGGCCTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTCAGCAGTCCTCCCTCC +
Preference number: 6 (lower is better)
Translates to: EHSFPKACRRPE*KSLSKFSSPPS
Trigger: GGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGGGAAGGAATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030586.15
ENSMUST00000106035.8
CDS CAA 72 bp CTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTaGCGGTCAGCCATTGTCTTCTTCTGCTCCTCAGGC +
Preference number: 6 (lower is better)
Translates to: LRSSRLLSSWSR*RSAIVFFCSSG
Trigger: GCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030586.15
CDS CAA 90 bp ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTaGCGGTCAGCCATTGTCTTCTTCTGCTCCTCAGGCAAGCCTTCT +
Preference number: 6 (lower is better)
Translates to: MELLRSSRLLSSWSR*RSAIVFFCSSGKPS
Trigger: AGAAGGCTTGCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030586.15