Pregenerated sensors for CCDC28B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028795Ensembl transcript IDs: ENSMUST00000030586.15, ENSMUST00000106035.8, ENSMUST00000150357.2, ENSMUST00000151838.8
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGGCAGCTGGTCCAGGTTaGGGTCAGCCATTGTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LGDTYAAGWSSGSAFSAKAAGPG*GQPLSS Trigger: AGAAGACAATGGCTGACCGCAACCTGGACCAGCTGC...CTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| 3UTR-3UTR CCA 90 bp | GGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: GSAFSAKCSFCMELLRSSRLLSS*SRLRSA Trigger: GGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCT...GGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| 3UTR CAA 90 bp | TCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATaGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTCTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: SAKCSFCMELLRSSR*LSSWSRLRSAIVFF Trigger: GAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| 3UTR CCA 72 bp | AGAGTAGCAGAAGAGTTTAGGCGACACCTACGCAGCTaGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: RVAEEFRRHLRS*LVLRLSILCQV Trigger: CACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAAACTCTTCTGCTACTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| 3UTR CCA 72 bp | ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: MELLRSSRLLSS*SRLRSAIVFFC Trigger: GCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CCA 90 bp | CAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGGTCTGCGCAGTGTGCCTaGGGCCTGTGCTGGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QNKPGCSGEGLLVELGGGSAQCA*GLCWLG Trigger: ACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGA...CCCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CCA 90 bp | TATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGGGGGCCTGTGCTGGTTaGGTCAGGCAGGGCTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: YVRGPRTNLDALGKAYWWGACAG*VRQGLG Trigger: TCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCC...CCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATA 60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | CAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGGTTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: QNKPGCSGEGLLVELGGGLGDGK*GSPRAK Trigger: CTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAA...CCCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CCA 90 bp | TTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGAGCCACTGTGGCTGGTaGGCACAGGGACTCTGCGCA | + |
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Preference number: 4 (lower is better) Translates to: LCQGTQNKPGCSGEGLLVSHCGW*AQGLCA Trigger: TGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCT...CACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CCA 90 bp | ACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTAAGGAGCCACTGTGGCTaGTGGGCACAGGGACTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TQLAGPQAQHSLPSVASVRSHCG*WAQGLC Trigger: GCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCT...TACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CCA 90 bp | GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGGCCAAGGAGCCACTGTaGCTGGTGGGCACAGGGACT | + |
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Preference number: 4 (lower is better) Translates to: VYVRGPRTNLDALGKAYWAKEPL*LVGTGT Trigger: AGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGC...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | GCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTATTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: ATPTQLAGPQAQHSLPSVLGDGK*GSPRAK Trigger: CTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAA...TACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | GGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: GLCQGTQNKPGCSGEGLLGSLLG*WQMRES Trigger: GGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCC...CAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | TTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGCAGGCAAGCCTTCTGTaGCCCCATCCTCCTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LGDTYAAGWSSGSAFSAKQASLL*PHPPLL Trigger: AAGAAGAGGAGGATGGGGTCACAGAAGGCTTGCCTG...CTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CCA 90 bp | TCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTGCGGGGCCTGTGCTGGTTaGGTCAGGCAGGGCTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: SRLLSSWSRLRSAIVFFCGACAG*VRQGLG Trigger: TCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCC...GCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | ACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGCCTGCAGGCGGCCTaGATGAAAATCATTGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: TQNKPGCSGEGLLVELGGGLQAA*MKIIEQ Trigger: TTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCC...TCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | CCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGCGAACATGCTCCAGCTaGTCGAAGGAACATTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PEQTWMLWGRPTGGAWGRRTCSS*SKEHSF Trigger: GAAGGAATGTTCCTTCGAGCAGCTGGAGCATGTTCG...CCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | AGAGTAGCAGAAGAGTTTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCCTGGCCAACTTCTCCTaGATCTCCCGAACATGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RVAEEFRRHLRSWLVLRLLANFS*ISRTCS Trigger: GGAGCATGTTCGGGAGATGCAGGAGAAGTTGGCCAG...GAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAAACTCTTCTGCTACTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR GCA 90 bp | ACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAACATCCAGGCTGAAGTaGAGTCTGGCCAACTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TQNKPGCSGEGLLVELGGTSRLK*SLANFS Trigger: GGAGAAGTTGGCCAGACTGCACTTCAGCCTGGATGT...TCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTAAGGAGCCACTGTGGCTaGTGGGCACAGGGACTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KGLCQGTQNKPGCSGEGLRSHCG*WAQGLC Trigger: GCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCT...TAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | TTAGGCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LGDTYAAGWSSGSAFSAKCRRPE*KSLSKF Trigger: GAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCA...CTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGCCTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR GCA 90 bp | ACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTAACATCCAGGCTGAAGTaGAGTCTGGCCAACTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TQLAGPQAQHSLPSVASVTSRLK*SLANFS Trigger: GGAGAAGTTGGCCAGACTGCACTTCAGCCTGGATGT...TACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CCA 90 bp | ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCATCTGCGCAGTGTGCCTaGGGCCTGTGCTGGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: MELLRSSRLLSSWSRLRSSAQCA*GLCWLG Trigger: ACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGA...TGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: MELLRSSRLLSSWSRLRSGSLLG*WQMRES Trigger: GGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCC...TGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | CCAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGCCTTGCCTGCTCTCTTaGACTTGGCTCGCTGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PAVNTEKRFMSGDPEQTWPCLLS*TWLAAW Trigger: CCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGG...CCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | CAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGGCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QNKPGCSGEGLLVELGGGLNENH*ASSAVL Trigger: GAGGACTGCTGAACTTGCTCAATGATTTTCATTCAG...CCCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | CAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGGCATTTCTCCTTGCCTaGTCTCTTGAACTTGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: QLAGPQAQHSLPSVASVWAFLLA*SLELGS Trigger: CGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGC...CCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR GCA 90 bp | CAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGTCAGGAAGGAGTGTTaGAGGGGTGTGCCTGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: QHREKVYVRGPRTNLDALVRKEC*RGVPAE Trigger: CTCCGCAGGCACACCCCTGCAACACTCCTTCCTGAC...CAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | TGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAGTCAGGAAGGAGTGTTaGAGGGGTGTGCCTGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: WSSGSAFSAKCSFCMELLVRKEC*RGVPAE Trigger: CTCCGCAGGCACACCCCTGCAACACTCCTTCCTGAC...TAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCCTGAGGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CCA 90 bp | CCAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGTGCCCTCTCCACCCTTaGTGTCCCAGGATCCACAAC | + |
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Preference number: 4 (lower is better) Translates to: PAVNTEKRFMSGDPEQTWCPLHP*CPRIHN Trigger: GTTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCA...CCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | TTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LCQGTQNKPGCSGEGLLVCRRPE*KSLSKF Trigger: GAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCA...CACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | GCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTGGCCTGCAGGCGGCCTaGATGAAAATCATTGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: AKIFQIAKQLVQVAVSHCGLQAA*MKIIEQ Trigger: TTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCC...ACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | AACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGCACACACATCCAGGCTaGAGTGCAGTCTGGCCAACT | + |
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Preference number: 4 (lower is better) Translates to: NTEKRFMSGDPEQTWMLWHTHPG*SAVWPT Trigger: AGTTGGCCAGACTGCACTTCAGCCTGGATGTGTGTG...CCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | CAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGACTGGCCAACTTCTCCTaGATCTCCCGAACATGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QLSTQRKGLCQGTQNKPGLANFS*ISRTCS Trigger: GGAGCATGTTCGGGAGATGCAGGAGAAGTTGGCCAG...TCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATAGACTTGGGAGCCTGTaGCCTCTCCACCCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SCQHREKVYVRGPRTNLDRLGSL*PLHPWC Trigger: ACACCAAGGGTGGAGAGGGCACAGGCTCCCAAGTCT...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CCA 90 bp | GCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGGCCAAGGAGCCACTGTaGCTGGTGGGCACAGGGACT | + |
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Preference number: 4 (lower is better) Translates to: AFSAKCSFCMELLRSSRLAKEPL*LVGTGT Trigger: AGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGC...CAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CCA 90 bp | AACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGACATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: NTEKRFMSGDPEQTWMLWTLLSS*SRLRSA Trigger: GGCTGACCGCAACCTGGACCAGCTGCTTAGCAATGT...CCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CCA 90 bp | CAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGTTTCCATGGGAGACTTaGGAGCCTGTGCCCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QHREKVYVRGPRTNLDALFPWET*EPVPSP Trigger: TGGAGAGGGCACAGGCTCCCAAGTCTCCCATGGAAA...CAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | GGCTCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCCACACACATCCAGGCTaGAGTGCAGTCTGGCCAACT | + |
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Preference number: 4 (lower is better) Translates to: GSAFSAKCSFCMELLRSSHTHPG*SAVWPT Trigger: AGTTGGCCAGACTGCACTTCAGCCTGGATGTGTGTG...GGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | TCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTCAGGCAAGCCTTCTGTaGCCCCATCCTCCTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: STQRKGLCQGTQNKPGCSQASLL*PHPPLL Trigger: AAGAAGAGGAGGATGGGGTCACAGAAGGCTTGCCTG...AGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR TCA 90 bp | AACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGCAACAGCCAGCTCTATaGCCCACATTGCTAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NTEKRFMSGDPEQTWMLWQQPAL*PTLLSS Trigger: GCTGCTTAGCAATGTGGGTCATAGAGCTGGCTGTTG...CCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCAGCTGGTCCAGGTTaGGGTCAGCCATTGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SCQHREKVYVRGPRTNLDAAGPG*GQPLSS Trigger: AGAAGACAATGGCTGACCGCAACCTGGACCAGCTGC...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | GTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCGCATTTCTCCTTGCCTaGTCTCTTGAACTTGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: VNTEKRFMSGDPEQTWMLAFLLA*SLELGS Trigger: CGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGC...GAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR GCA 90 bp | AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATTGCATCTCCCGAACATaGTCCAGCTGCTCGAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: SCQHREKVYVRGPRTNLDCISRT*SSCSKE Trigger: TTCCTTCGAGCAGCTGGAGCATGTTCGGGAGATGCA...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| 3UTR CAA 72 bp | GCACCAAGGGGCTTCCGAATCCGTAAAATTCACAGTTaGAAGAGGAGAGTAGCAGAAGAGTTTAGGCGACAC | + |
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Preference number: 4 (lower is better) Translates to: APRGFRIRKIHS*KRRVAEEFRRH Trigger: GTGTCGCCTAAACTCTTCTGCTACTCTCCTCTTCAAACTGTGAATTTTACGGATTCGGAAGCCCCTTGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030586.15 ENSMUST00000151838.8 |
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| 3UTR CAA 72 bp | TCAGCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATaGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SAFSAKCSFCME*LRSSRLLSSWS Trigger: GGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGCTGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR TCA 90 bp | GCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AFSAKCSFCMELLRSSRLLNENH*ASSAVL Trigger: GAGGACTGCTGAACTTGCTCAATGATTTTCATTCAG...CAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS CCA 90 bp | GGAGCCACTGTGGCTGGTGGGCACAGGGACTCTGCGCAGTGTGCCTaGGGCCTGTGCTGGTTGGGTCAGGCAGGGCTTAGGACTCCGTTT | + |
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Preference number: 5 (lower is better) Translates to: GATVAGGHRDSAQCA*GLCWLGQAGLRTPF Trigger: AAACGGAGTCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS CCA 90 bp | GTGATGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTaGTGGGCACAGGGACTCTGCGCAGTGTGCCTGGGGCCTGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: VMANEGVPEPRSHCG*WAQGLCAVCLGPVL Trigger: CAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS CCA 90 bp | ATGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTGGTaGGCACAGGGACTCTGCGCAGTGTGCCTGGGGCCTGTGCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: MANEGVPEPRSHCGW*AQGLCAVCLGPVLV Trigger: AACCAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCACCAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS GCA 90 bp | AACATCTGTCACCTCTGTCAGGAAGGAGTGTTGCAGGGGTGTGCCTaGGGAGCCGCCTCCACCTCCAGCCAGCACCGGTCGGCATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: NICHLCQEGVLQGCA*GAASTSSQHRSAFL Trigger: GAGAAATGCCGACCGGTGCTGGCTGGAGGTGGAGGCGGCTCCGCAGGCACACCCCTGCAACACTCCTTCCTGACAGAGGTGACAGATGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS CCA 90 bp | GTGGGCACAGGGACTCTGCGCAGTGTGCCTGGGGCCTGTGCTGGTTaGGTCAGGCAGGGCTTAGGACTCCGTTTCTTCTTTTTGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: VGTGTLRSVPGACAG*VRQGLGLRFFFLSS Trigger: GGAAGACAAAAAGAAGAAACGGAGTCCTAAGCCCTGCCTGACCCAACCAGCACAGGCCCCAGGCACACTGCGCAGAGTCCCTGTGCCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS-3UTR CAA 90 bp | CAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGTGCCCTCTCCACCCTaGGTGTCCCAGGATCCACAA | + |
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Preference number: 5 (lower is better) Translates to: QGTQNKPGCSGEGLLVELVPSPP*VSQDPQ Trigger: TTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCAC...AAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS TCA 90 bp | TTGCCTGCTCTCTTGAACTTGGCTCGCTGCTTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTGGTGGGCACA | + |
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Preference number: 5 (lower is better) Translates to: LPALLNLARCLGDGK*GSPRAKEPLWLVGT Trigger: TGTGCCCACCAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS-3UTR CAA 90 bp | CCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGGAGCTTGGGGGAGGTCCTTGCCTGCTCTCTaGAACTTGGCTCGCTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: PEQTWMLWGRPTGGAWGRSLPAL*NLARCL Trigger: CAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGA...CCTCCCCCAAGCTCCACCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS TCA 90 bp | CCCTCTCCACCCTTGGTGTCCCAGGATCCACAACAGCCAGCTCTATaGCCCACATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATT | + |
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Preference number: 5 (lower is better) Translates to: PSPPLVSQDPQQPAL*PTLLSSWSRLRSAI Trigger: AATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATGTGGGTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGGTGGAGAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS CCA 90 bp | CCAACTTTCCATGGGAGACTTGGGAGCCTGTGCCCTCTCCACCCTTaGTGTCCCAGGATCCACAACAGCCAGCTCTATGACCCACATTGC | + |
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Preference number: 5 (lower is better) Translates to: PTFHGRLGSLCPLHP*CPRIHNSQLYDPHC Trigger: GCAATGTGGGTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCACAGGCTCCCAAGTCTCCCATGGAAAGTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CAA 90 bp | GCGACACCTACGCAGCTGGCTGGTCCTCAGGCTCAGCATTCTCTGCCAAGTGTACCTGCTCTCTTGAACTaGGCTCGCTGCTTGGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: ATPTQLAGPQAQHSLPSVPALLN*ARCLGD Trigger: ATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGG...TACACTTGGCAGAGAATGCTGAGCCTGAGGACCAGCCAGCTGCGTAGGTGTCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CAA 90 bp | GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGTGTCAGGAAGGAGTGTaGCAGGGGTGTGCCTGCGGA | + |
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Preference number: 5 (lower is better) Translates to: VYVRGPRTNLDALGKAYWCQEGV*QGCACG Trigger: TCCGCAGGCACACCCCTGCAACACTCCTTCCTGACA...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS TCA 90 bp | GCATTTCTCCTTGCCTGCTCTCTTGAACTTGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: AFLLACSLELGSLLG*WQMRESQSQGATVA Trigger: AGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS-3UTR CAA 90 bp | GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGAGCAGCTGGTCCAGGTaGCGGTCAGCCATTGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: VYVRGPRTNLDALGKAYWSSWSR*RSAIVF Trigger: GAAGACAATGGCTGACCGCAACCTGGACCAGCTGCT...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS GCA 90 bp | TCCCCACACACATCCAGGCTGAAGTGCAGTCTGGCCAACTTCTCCTaGATCTCCCGAACATGCTCCAGCTGCTCGAAGGAACATTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: SPHTSRLKCSLANFS*ISRTCSSCSKEHSF Trigger: GAAGGAATGTTCCTTCGAGCAGCTGGAGCATGTTCGGGAGATGCAGGAGAAGTTGGCCAGACTGCACTTCAGCCTGGATGTGTGTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 |
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| CDS GCA 90 bp | TTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTaGTCCTCAGGCAAGCCTTCTGTGACCCCATCCTCCTCTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LLSSWSRLRSAIVFF*SSGKPSVTPSSSSS Trigger: GGAAGAAGAGGAGGATGGGGTCACAGAAGGCTTGCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 |
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| CDS-3UTR CAA 90 bp | GCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTTGCGGTCAGCCATTGTTGTCAGGAAGGAGTGTaGCAGGGGTGTGCCTGCGGA | + |
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Preference number: 5 (lower is better) Translates to: AKIFQIAKQLVQVAVSHCCQEGV*QGCACG Trigger: TCCGCAGGCACACCCCTGCAACACTCCTTCCTGACA...ACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS-3UTR CAA 90 bp | GTTTATGTCAGGGGACCCAGAACAAACCTGGATGCTCTGGGGAAGGCCTACTGGGGTCGGCATTTCTCCTaGCCTGCTCTCTTGAACTTG | + |
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Preference number: 5 (lower is better) Translates to: VYVRGPRTNLDALGKAYWGRHFS*PALLNL Trigger: CAAGTTCAAGAGAGCAGGCAAGGAGAAATGCCGACC...CCAGTAGGCCTTCCCCAGAGCATCCAGGTTTGTTCTGGGTCCCCTGACATAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS-3UTR CAA 90 bp | CCAGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGCCTGCTCTCTTGAACTaGGCTCGCTGCTTGGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: PAVNTEKRFMSGDPEQTWPALLN*ARCLGD Trigger: ATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGG...CCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS CCA 90 bp | AGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTaGTCCAGGTTGCGGTCAGCCATTGTCTTCTTCTGCTCCTCAGGC | + |
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Preference number: 5 (lower is better) Translates to: SFCMELLRSSRLLSS*SRLRSAIVFFCSSG Trigger: GCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCATACAGAAGCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030586.15 |
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| CDS-3UTR CAA 90 bp | AGCTGTCAACACAGAGAAAAGGTTTATGTCAGGGGACCCAGAACAAACCTGGATGGTTGCGGTCAGCCATaGTCTTCTTCTGCTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: SCQHREKVYVRGPRTNLDGCGQP*SSSAPQ Trigger: CTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACC...ATCCAGGTTTGTTCTGGGTCCCCTGACATAAACCTTTTCTCTGTGTTGACAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS TCA 90 bp | AACATGCTCCAGCAAAGGCCTGCAGGCGGCCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTCCCTCCATCTCATAAACATCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: NMLQQRPAGGLNENH*ASSAVLPPSHKHLS Trigger: TGACAGATGTTTATGAGATGGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGCTGGAGCATGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS TCA 90 bp | AACATTCCTTCCCAAAGGCCTGCAGGCGGCCTGAATGAAAATCATTaGGCAAGTTCAGCAGTCCTCCCTCCATCTCATAAACATCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: NIPSQRPAGGLNENH*ASSAVLPPSHKHLS Trigger: TGACAGATGTTTATGAGATGGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGGGAAGGAATGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 |
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| CDS-3UTR CAA 90 bp | GCATTCTCTGCCAAGTGTAGCTTCTGTATGGAATTGCTAAGATCTTCCAGATTGTCCTTGCCTGCTCTCTaGAACTTGGCTCGCTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: AFSAKCSFCMELLRSSRLSLPAL*NLARCL Trigger: CAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGA...CAATCTGGAAGATCTTAGCAATTCCATACAGAAGCTACACTTGGCAGAGAATGC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS CCA 72 bp | CATGGGAGACTTGGGAGCCTGTGCCCTCTCCACCCTTaGTGTCCCAGGATCCACAACAGCCAGCTCTATGAC | + |
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Preference number: 6 (lower is better) Translates to: HGRLGSLCPLHP*CPRIHNSQLYD Trigger: GTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGGTGGAGAGGGCACAGGCTCCCAAGTCTCCCATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS CAA 72 bp | CTCATAAACATCTGTCACCTCTGTCAGGAAGGAGTGTaGCAGGGGTGTGCCTGCGGAGCCGCCTCCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: LINICHLCQEGV*QGCACGAASTS Trigger: GGAGGTGGAGGCGGCTCCGCAGGCACACCCCTGCAACACTCCTTCCTGACAGAGGTGACAGATGTTTATGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS TCA 72 bp | CTCTTGAACTTGGCTCGCTGCTTGGGTGATGGCAAATaGGGGAGTCCCAGAGCCAAGGAGCCACTGTGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LLNLARCLGDGK*GSPRAKEPLWL Trigger: CAGCCACAGTGGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS TCA 72 bp | CTTGCCTGCTCTCTTGAACTTGGCTCGCTGCTTGGGTaGTGGCAAATGAGGGAGTCCCAGAGCCAAGGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: LACSLELGSLLG*WQMRESQSQGA Trigger: GGCTCCTTGGCTCTGGGACTCCCTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS TCA 72 bp | CCCTTGGTGTCCCAGGATCCACAACAGCCAGCTCTATaGCCCACATTGCTAAGCAGCTGGTCCAGGTTGCGG | + |
|
Preference number: 6 (lower is better) Translates to: PLVSQDPQQPAL*PTLLSSWSRLR Trigger: CCGCAACCTGGACCAGCTGCTTAGCAATGTGGGTCATAGAGCTGGCTGTTGTGGATCCTGGGACACCAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106035.8 |
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| CDS TCA 72 bp | CCAGCACCGGTCGGCATTTCTCCTTGCCTGCTCTCTTaGACTTGGCTCGCTGCTTGGGTGATGGCAAATGAG | + |
|
Preference number: 6 (lower is better) Translates to: PAPVGISPCLLS*TWLAAWVMANE Trigger: CTCATTTGCCATCACCCAAGCAGCGAGCCAAGTTCAAGAGAGCAGGCAAGGAGAAATGCCGACCGGTGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 ENSMUST00000150357.2 ENSMUST00000151838.8 |
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| CDS TCA 72 bp | GAACATGCTCCAGCAAAGGCCTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTCAGCAGTCCTCCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: EHAPAKACRRPE*KSLSKFSSPPS Trigger: GGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGCTGGAGCATGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151838.8 |
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| CDS TCA 72 bp | GAACATTCCTTCCCAAAGGCCTGCAGGCGGCCTGAATaGAAATCATTGAGCAAGTTCAGCAGTCCTCCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: EHSFPKACRRPE*KSLSKFSSPPS Trigger: GGAGGGAGGACTGCTGAACTTGCTCAATGATTTTCATTCAGGCCGCCTGCAGGCCTTTGGGAAGGAATGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030586.15 ENSMUST00000106035.8 |
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| CDS CAA 72 bp | CTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTaGCGGTCAGCCATTGTCTTCTTCTGCTCCTCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: LRSSRLLSSWSR*RSAIVFFCSSG Trigger: GCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030586.15 |
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| CDS CAA 90 bp | ATGGAATTGCTAAGATCTTCCAGATTGCTAAGCAGCTGGTCCAGGTaGCGGTCAGCCATTGTCTTCTTCTGCTCCTCAGGCAAGCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: MELLRSSRLLSSWSR*RSAIVFFCSSGKPS Trigger: AGAAGGCTTGCCTGAGGAGCAGAAGAAGACAATGGCTGACCGCAACCTGGACCAGCTGCTTAGCAATCTGGAAGATCTTAGCAATTCCAT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030586.15 |
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